genome.fa.s9873.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009873.1 Kokia drynarioides strain JFW-HI SEQ_124608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91413

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2125--2870	61	12.4	59	75	8	552	36	15	18	29	1.92
2125--2772	302	2.1	302	80	8	705	36	15	18	29	1.92
2125--2874	120	6.2	119	79	9	588	36	15	18	29	1.92
2814--2943	58	2.2	59	85	8	169	30	16	16	36	1.91
2833--2943	58	1.9	57	89	7	170	30	18	19	30	1.96
3906--3965	32	1.9	29	89	3	75	16	11	8	63	1.51
4050--4082	15	2.1	16	94	5	59	60	0	3	36	1.12
4969--5026	19	3.1	20	78	9	61	51	3	0	44	1.18
5380--5423	21	2.0	22	83	12	56	43	0	2	54	1.12
5511--5547	19	1.9	19	88	0	56	35	16	0	48	1.46
6807--6844	16	2.3	17	90	4	60	23	13	5	57	1.56
13940--14220	144	1.9	145	92	0	474	27	20	14	37	1.91
17970--18046	38	2.0	38	92	0	127	28	23	14	33	1.94
35069--35099	16	1.9	16	93	0	53	61	0	16	22	1.34
35897--35949	26	2.0	26	92	0	88	28	22	22	26	1.99
40714--40801	46	1.9	46	85	0	122	28	9	20	42	1.82
43972--44022	26	2.0	26	88	0	75	29	23	19	27	1.98
44637--44666	9	3.3	9	95	0	51	43	10	13	33	1.77
44734--44794	19	3.3	19	82	13	74	59	4	1	34	1.29
44734--44794	18	3.3	18	84	8	70	59	4	1	34	1.29
44760--44840	29	2.8	29	80	14	87	65	1	2	30	1.13
44780--44832	20	2.7	20	85	5	63	67	0	1	30	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45936--46005	20	3.4	21	81	11	83	68	8	1	21	1.24
45941--45998	21	2.8	20	82	14	73	74	3	1	20	1.06
46019--46068	22	2.2	23	79	13	59	46	22	2	30	1.63
46032--46074	22	2.0	22	81	9	52	48	23	0	27	1.51
46978--47032	24	2.2	26	80	9	60	54	0	0	45	0.99
49107--49148	22	1.9	22	95	0	75	38	0	14	47	1.44
54693--54721	14	2.0	15	93	6	51	13	13	3	68	1.33
58992--59099	55	2.0	55	100	0	216	26	23	14	35	1.94
63609--63639	16	1.9	16	93	0	53	64	9	3	22	1.38
64088--64141	27	2.1	26	82	6	65	53	7	5	33	1.52
65291--65329	20	2.0	20	89	0	60	30	2	0	66	1.05
65288--65349	25	2.5	25	84	5	72	27	1	0	70	0.96
65324--65355	16	2.0	16	93	0	55	28	0	0	71	0.86
70394--70483	45	2.0	45	97	0	171	24	16	20	38	1.92
70486--70921	42	10.5	42	74	14	167	25	16	28	29	1.97
70541--70941	81	5.0	81	90	1	590	24	16	28	30	1.97
70541--70939	161	2.5	162	90	2	613	24	16	28	30	1.97
72051--72166	59	1.9	60	91	3	189	16	18	16	49	1.81
77182--77228	24	2.0	24	95	0	85	25	29	21	23	1.99
83507--83584	34	2.2	35	81	9	95	44	21	15	17	1.86
83521--83589	34	2.0	34	91	0	111	42	23	14	20	1.89
87844--87904	27	2.4	24	82	15	86	39	9	29	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88582--88626	19	2.5	18	89	7	65	15	13	11	60	1.60

Tables:   1

The End!