Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009876.1 Kokia drynarioides strain JFW-HI SEQ_124611, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3152
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29


Found at i:3109 original size:21 final size:21

Alignment explanation


    Indices: 3083--3125  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3073 TAGGGTCCAT

                         *       
       3083 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

                  *              
       3104 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

             
       3125 T
          1 T

       3126 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTA
Done.