Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000988.1 Kokia drynarioides strain JFW-HI SEQ_112185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3195
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30


Found at i:680 original size:21 final size:21

Alignment explanation


    Indices: 654--694  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        644 TCATCATGAT

                  *              
        654 ACTCTATTCCTCCCGGGCAAG
          1 ACTCTACTCCTCCCGGGCAAG

                         *      
        675 ACTCTACTCCTCCGGGGCAA
          1 ACTCTACTCCTCCCGGGCAA

        695 ATGGACCTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.20, C:0.39, G:0.20, T:0.22


Consensus pattern (21 bp):   
ACTCTACTCCTCCCGGGCAAG
Done.