Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009881.1 Kokia drynarioides strain JFW-HI SEQ_124616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1457
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32


Found at i:1363 original size:45 final size:45

Alignment explanation


    Indices: 1244--1369  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

       1234 AGTATCGCGA

                          *  *           **   *  *       
       1244 TGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTTAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGG

              *         *                                
       1289 TGACTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGG

                                                
       1334 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

       1370 TGAACTATGC


Statistics
Matches: 71,  Mismatches: 10, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   71  1.00

ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGG
Done.