genome.fa.s9882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009882.1 Kokia drynarioides strain JFW-HI SEQ_124617, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123948

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1320--1592	43	6.3	43	82	3	305	27	20	26	25	1.99
5100--5216	51	2.3	51	89	0	171	35	11	10	42	1.76
11244--11353	56	2.0	56	94	0	193	43	8	16	31	1.77
14035--14116	40	2.0	40	88	0	119	21	9	12	56	1.65
15084--15128	23	1.9	23	82	13	56	48	0	44	6	1.29
16733--16865	23	5.7	23	82	2	151	38	18	12	30	1.88
16735--16865	46	2.8	46	84	6	167	38	19	12	30	1.88
16881--16910	4	7.5	4	92	0	51	73	23	0	3	0.98
19587--19840	128	2.0	128	90	1	402	32	24	18	24	1.97
20529--20569	17	2.5	16	84	4	55	70	0	4	24	1.06
40596--40641	24	1.9	24	86	8	67	45	0	0	54	0.99
53937--53981	23	2.0	23	83	16	58	68	6	15	8	1.36
54101--54156	24	2.3	24	84	9	78	44	0	44	10	1.38
73857--73891	18	1.9	18	88	0	52	48	20	11	20	1.79
83526--83550	13	1.9	13	100	0	50	24	0	20	56	1.43
86646--86696	23	2.3	22	86	10	68	56	0	33	9	1.32
91388--91446	23	2.5	23	86	10	75	57	0	35	6	1.25
100498--100737	40	6.0	40	83	0	248	28	18	17	34	1.94
100500--100737	120	2.0	120	84	3	309	28	18	17	34	1.94
105292--105353	31	2.0	31	100	0	124	32	22	16	29	1.95
106725--106917	40	4.8	40	81	0	197	29	18	17	35	1.93
106765--106922	80	2.0	80	87	0	226	29	17	18	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108578--108607	11	2.7	11	89	0	51	40	6	0	53	1.27
108995--109063	21	3.3	20	74	6	75	11	8	7	72	1.28
108990--109076	42	2.1	41	85	8	115	11	11	5	71	1.30
116619--116650	16	1.9	17	93	6	57	62	0	28	9	1.26
117621--117732	39	3.0	37	80	10	124	24	14	21	40	1.90
120117--120180	29	2.2	29	83	5	76	43	17	14	25	1.86
120142--120218	29	2.7	29	85	4	102	41	15	18	24	1.89
120308--120415	40	2.7	40	83	0	135	23	15	21	39	1.91
120956--121065	53	2.1	52	84	1	139	32	34	12	20	1.90
120976--121114	53	2.6	52	84	5	163	33	33	14	18	1.91
121072--121210	43	3.2	43	83	3	145	30	35	14	19	1.92

Tables:   1

The End!