genome.fa.s9886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009886.1 Kokia drynarioides strain JFW-HI SEQ_124622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212314

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871--968	4	24.0	4	78	12	92	0	34	0	65	0.93
877--957	20	4.0	20	87	9	110	0	37	0	62	0.95
871--969	13	7.7	13	78	13	107	0	35	0	64	0.94
871--968	17	6.0	17	79	13	100	0	34	0	65	0.93
1674--1746	34	2.1	34	89	0	110	45	6	4	43	1.49
1752--1793	19	2.3	19	80	19	54	21	4	4	69	1.26
2650--2693	22	2.0	22	86	0	61	47	0	2	50	1.13
3795--3873	31	2.6	30	76	9	81	32	2	5	59	1.33
4945--4991	20	2.3	20	85	0	67	44	2	17	36	1.60
5318--5361	20	2.2	20	83	4	52	50	4	2	43	1.35
16988--17039	11	4.8	11	79	9	54	69	0	5	25	1.10
17536--17574	12	3.2	12	85	0	51	71	12	5	10	1.28
22539--22573	18	1.9	18	88	0	52	31	2	2	62	1.24
24586--24639	28	1.9	28	88	7	83	55	0	1	42	1.10
30365--30407	20	2.1	21	83	12	54	41	13	16	27	1.86
31183--31289	50	2.1	50	100	0	214	16	18	10	54	1.70
34729--34775	20	2.4	20	85	3	60	38	17	4	40	1.69
34749--34822	30	2.4	30	80	6	87	36	12	8	43	1.72
35320--35401	40	2.0	40	100	0	164	35	9	12	42	1.75
35393--35473	39	2.1	39	97	0	153	37	12	11	39	1.78
36056--36107	13	3.9	13	78	12	52	40	11	7	40	1.70
37834--37907	23	3.3	23	75	5	89	13	22	18	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37811--37910	46	2.2	44	87	7	148	12	24	19	45	1.83
48973--49043	31	2.3	31	75	18	76	35	9	12	42	1.76
53373--53727	178	2.0	179	87	3	520	32	15	22	30	1.95
53768--54274	215	2.4	215	87	2	696	31	14	22	31	1.94
63013--63055	21	2.0	22	86	4	61	46	9	4	39	1.57
69513--69580	31	2.3	30	80	10	77	35	11	17	35	1.87
69929--69974	24	1.9	24	82	8	58	52	6	2	39	1.40
85388--85559	87	2.0	88	96	1	319	36	16	16	30	1.91
88574--88642	34	2.0	34	100	0	138	40	14	5	39	1.70
91471--91495	3	8.3	3	100	0	50	0	32	0	68	0.90
96178--96219	10	3.7	11	84	12	50	69	0	2	28	1.01
96178--96226	13	4.2	12	80	17	59	65	0	2	32	1.04
104450--104503	19	2.6	22	80	16	71	31	0	0	68	0.90
111363--111406	22	2.0	22	95	0	79	36	9	15	38	1.80
120923--120992	31	2.2	32	82	2	88	45	14	5	34	1.68
124052--124082	14	2.1	15	94	5	55	61	22	12	3	1.46
124527--124601	31	2.4	30	77	18	82	38	2	10	48	1.52
129229--129254	3	8.7	3	100	0	52	34	0	0	65	0.93
130631--130661	2	15.5	2	100	0	62	48	0	0	51	1.00
131328--131354	3	9.0	3	100	0	54	33	0	0	66	0.92
131758--131961	52	4.0	52	71	14	208	43	2	10	42	1.54
143433--143715	134	2.1	134	85	2	381	41	16	10	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143566--143945	154	2.5	154	79	9	421	41	17	10	31	1.82
144185--144233	24	2.1	23	88	11	73	53	10	26	10	1.66
149206--149267	28	2.2	28	88	0	88	24	9	30	35	1.87
149349--149577	59	3.9	59	80	5	207	34	6	25	34	1.81
149339--149502	29	5.6	29	68	16	81	32	5	26	34	1.80
149426--149536	30	3.7	30	80	3	125	39	1	20	37	1.63
149619--149687	21	3.3	21	73	23	65	44	1	0	53	1.09
149651--149684	15	2.2	16	89	5	52	50	2	0	47	1.16
149659--149704	24	1.9	24	95	0	83	43	4	2	50	1.34
149639--149687	18	2.8	17	78	15	55	46	2	0	51	1.12
151725--151759	3	11.7	3	87	0	52	28	0	40	31	1.57
152828--152852	4	6.2	4	100	0	50	48	0	0	52	1.00
154482--154679	91	2.2	90	86	0	261	32	10	15	41	1.81
156115--156164	19	2.6	21	81	15	63	14	8	4	74	1.20
162288--162312	2	12.5	2	100	0	50	48	0	0	52	1.00
186511--186551	22	1.9	22	85	5	57	34	4	4	56	1.42
188452--188888	181	2.4	182	85	2	560	37	20	15	26	1.92
188452--188888	180	2.4	181	85	1	556	37	20	15	26	1.92
190204--190234	16	2.0	16	93	6	55	61	12	0	25	1.32
192824--192876	18	3.1	18	86	10	67	39	0	5	54	1.24
193026--193112	44	2.0	44	95	4	160	47	3	6	42	1.47

Tables:   1

The End!