Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009887.1 Kokia drynarioides strain JFW-HI SEQ_124623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63448
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Found at i:4566 original size:20 final size:20
Alignment explanation
Indices: 4538--4575 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4528 GATATGATCC
*
4538 TTGTGATCTTAGAGATTTGA
1 TTGTAATCTTAGAGATTTGA
4558 TTGTAATCTTAGAGATTT
1 TTGTAATCTTAGAGATTT
4576 TTTTTGTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (20 bp):
TTGTAATCTTAGAGATTTGA
Found at i:13641 original size:40 final size:40
Alignment explanation
Indices: 13585--13664 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
13575 TCAATATTAG
13585 AAAGCATAACTAGGGATTTGAGGGCCTGAATGGTAGCTCC
1 AAAGCATAACTAGGGATTTGAGGGCCTGAATGGTAGCTCC
*
13625 AAAGCATAACTGGGGATTTGAGGGCCTGAATGGTAGCTCC
1 AAAGCATAACTAGGGATTTGAGGGCCTGAATGGTAGCTCC
13665 CTCGTGCATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (40 bp):
AAAGCATAACTAGGGATTTGAGGGCCTGAATGGTAGCTCC
Found at i:16459 original size:30 final size:30
Alignment explanation
Indices: 16416--16476 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
16406 TTAGTACATG
*
16416 AATTTAACATTTTTCTTAATTTGGTA-TTAA
1 AATTTAACATTTTT-TTAAGTTGGTACTTAA
* *
16446 AATTTGACTTTTTTTTAAGTTGGTACTTAA
1 AATTTAACATTTTTTTAAGTTGGTACTTAA
16476 A
1 A
16477 TTTTTTGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (30 bp):
AATTTAACATTTTTTTAAGTTGGTACTTAA
Found at i:16468 original size:29 final size:31
Alignment explanation
Indices: 16416--16476 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 31
16406 TTAGTACATG
*
16416 AATTTAACATTTTTCTTAATTTGGTA-TTAA
1 AATTTAACATTTTTCTTAAGTTGGTACTTAA
* *
16446 AATTTGAC-TTTTTTTTAAGTTGGTACTTAA
1 AATTTAACATTTTTCTTAAGTTGGTACTTAA
16476 A
1 A
16477 TTTTTTGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (31 bp):
AATTTAACATTTTTCTTAAGTTGGTACTTAA
Found at i:21376 original size:21 final size:21
Alignment explanation
Indices: 21352--21399 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
21342 GATAAACTGT
21352 CACATAATTGTCAAAAATGGA
1 CACATAATTGTCAAAAATGGA
* *
21373 CACATAATTGTCAATAATGGC
1 CACATAATTGTCAAAAATGGA
21394 CACATA
1 CACATA
21400 TCTTCCACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (21 bp):
CACATAATTGTCAAAAATGGA
Found at i:22083 original size:22 final size:21
Alignment explanation
Indices: 22056--22100 Score: 81
Period size: 22 Copynumber: 2.1 Consensus size: 21
22046 CATCATAATA
22056 AAATATAATAAAAATTTAAACT
1 AAATATAATAAAAA-TTAAACT
22078 AAATATAATAAAAATTAAACT
1 AAATATAATAAAAATTAAACT
22099 AA
1 AA
22101 CTTCCCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATATAATAAAAATTAAACT
Found at i:24659 original size:3 final size:3
Alignment explanation
Indices: 24651--24676 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
24641 ATATTTCTAT
24651 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
24677 TTCTTCTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:33346 original size:9 final size:9
Alignment explanation
Indices: 33332--33410 Score: 90
Period size: 9 Copynumber: 8.7 Consensus size: 9
33322 ACCTAAAAAA
33332 AGAAAGAAG
1 AGAAAGAAG
33341 AGAAAGAAG
1 AGAAAGAAG
33350 AGAAAGAAG
1 AGAAAGAAG
33359 AGAAAGAAG
1 AGAAAGAAG
* *
33368 AGAAAAAAA
1 AGAAAGAAG
33377 AGGAAAGAAG
1 A-GAAAGAAG
33387 AATGAAA-AAG
1 -A-GAAAGAAG
33397 AGAAA-AAG
1 AGAAAGAAG
*
33405 AAAAAG
1 AGAAAG
33411 GAGTGGTCGA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
8 11 0.18
9 36 0.59
10 9 0.15
11 5 0.08
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (9 bp):
AGAAAGAAG
Found at i:34882 original size:49 final size:49
Alignment explanation
Indices: 34763--35567 Score: 380
Period size: 49 Copynumber: 16.7 Consensus size: 49
34753 ACAGGTTTGG
* *** * * * *
34763 AGGGAAAGGTTGAAGCTGTAACGGCGAACCTTGTACCTTAGAGACAT-A
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* *
34811 TA-GGAAAGATTGAAGCCGCAACGGTGAATCTTGTACCATGGAGATATGA
1 -AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * * * * *
34860 AGGGAAAGGTTGAATCCACAACGACGAACCTTGTACCTTGGAGATGTGA
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * * * ** * * *
34909 TGGGAAATATTAAAGTCGTAACGGCAAATCTTGTACCATGGAAATATGG
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * * * *
34958 AGGGAAAGGTTGAAGCCACAAGGGCGAACCTTGTACCTTTGAGATATGA
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * * * * * *
35007 TGGGAAAGATTAAAGCCACAACGGTGAATCTTGTACCATAGAGTTGTGG
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * * * * * * *
35056 AGGGAAAGATTAAAGTCGCAACGACGAACCTTATACC-T-TAGAAATGTA
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATG-A
** * * * * * *
35104 ATGGGAAAGATTGAAGCCGTAACGGTGAATTTTGTACCATAGAGTTGTGG
1 A-GGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* *** * * * * * *
35154 AGGGAAAGGTTGAAGTTGCGACGGCGAACCTTGTACCTTAGAAATTTGA
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* ** * *
35203 TGGGAAAGATTGAAGCCGTAACGGCGAA-----T---A--GAGTTATGG
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * *** * * * *
35242 AGGGAAAGGTTAAAGCCGTGACGGTGAACCTTGTACCTTGGAGATTTGA
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * *** * * * *
35291 TGGGAAAGATTGAAGCCGCAACAATGAATCTTGTACCATAGAGTTGTGG
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * * * * * * * * * * *
35340 AGTGAAAGGTTGAAGTCGCGACGACAAACCTTGTACCTTAGAAATGTGA
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* * ** * * * * * *
35389 TGGGAAAGATTGAAGTCGTAACGACGAATCTTATACCATAGAGTTGTGG
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
*
35438 AGGGAAAGGTTGAAGCCACAACGGCGAATCTTGTACCATGGAGATAT-A
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* ** * * * * ** *
35486 GAGGGAAAGGTTGAAGCCGTAACGGCAAACCTTATACCTTAAAGATGTGA
1 -AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
* *
35536 AGGGAAAGATTAAAGCCACAACGACGAATCTT
1 AGGGAAAGATTGAAGCCACAACGGCGAATCTT
35568 ACATCCTGAA
Statistics
Matches: 559, Mismatches: 179, Indels: 36
0.72 0.23 0.05
Matches are distributed among these distances:
39 28 0.05
44 2 0.00
47 4 0.01
48 40 0.07
49 478 0.86
50 3 0.01
51 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.23
Consensus pattern (49 bp):
AGGGAAAGATTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATGA
Found at i:34956 original size:98 final size:98
Alignment explanation
Indices: 34760--35510 Score: 788
Period size: 98 Copynumber: 7.8 Consensus size: 98
34750 TCTACAGGTT
* * * *
34760 TGGAGGGAAAGGTTGAAGCTGTAACGGCGAACCTTGTACCTTAGAGACAT-ATAGGAAAGATTGA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
* * * *
34824 AGCCGCAACGGTGAATCTTGTACCATGGAGATA
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
* * * * * * * *
34857 TGAAGGGAAAGGTTGAATCCACAACGACGAACCTTGTACCTTGGAGATGTGATGGGAAATATTAA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
* ** * ** *
34922 AGTCGTAACGGCAAATCTTGTACCATGGAAATA
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
* * * *
34955 TGGAGGGAAAGGTTGAAGCCACAAGGGCGAACCTTGTACCTTTGAGATATGATGGGAAAGATTAA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
**
35020 AGCCACAACGGTGAATCTTGTACCATAGAGTTG
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
* * * * * * * *
35053 TGGAGGGAAAGATTAAAGTCGCAACGACGAACCTTATACCTTAGAAATGTAATGGGAAAGATTGA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
*
35118 AGCCGTAACGGTGAATTTTGTACCATAGAGTTG
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
** * * *
35151 TGGAGGGAAAGGTTGAAGTTGCGACGGCGAACCTTGTACCTTAGAAATTTGATGGGAAAGATTGA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
*
35216 AGCCGTAAC-G-G---C--G-A--ATAGAGTTA
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
* ** * * *
35239 TGGAGGGAAAGGTTAAAGCCGTGACGGTGAACCTTGTACCTTGGAGATTTGATGGGAAAGATTGA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
* **
35304 AGCCGCAACAATGAATCTTGTACCATAGAGTTG
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
* * * * * * *
35337 TGGAGTGAAAGGTTGAAGTCGCGACGACAAACCTTGTACCTTAGAAATGTGATGGGAAAGATTGA
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
* ** *
35402 AGTCGTAACGACGAATCTTATACCATAGAGTTG
66 AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
* * * * *
35435 TGGAGGGAAAGGTTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATAGA-GGGAAAGGTTG
1 TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATAT-GATGGGAAAGATTG
35499 AAGCCGTAACGG
65 AAGCCGTAACGG
35511 CAAACCTTAT
Statistics
Matches: 545, Mismatches: 97, Indels: 23
0.82 0.15 0.03
Matches are distributed among these distances:
88 74 0.14
90 2 0.00
91 1 0.00
93 1 0.00
95 1 0.00
96 2 0.00
97 42 0.08
98 420 0.77
99 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (98 bp):
TGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCTTAGAGATATGATGGGAAAGATTGA
AGCCGTAACGGTGAATCTTGTACCATAGAGTTG
Found at i:35291 original size:88 final size:88
Alignment explanation
Indices: 35142--35417 Score: 291
Period size: 88 Copynumber: 3.0 Consensus size: 88
35132 ATTTTGTACC
* * **
35142 ATAGAGTTGTGGAGGGAAAGGTTGAAGTTGCGACGGCGAACCTTGTACCTTAGAAATTTGATGGG
1 ATAGAGTTATGGAGGGAAAGGTTAAAGCCGCGACGGCGAACCTTGTACCTTAGAAATTTGATGGG
35207 AAAGATTGAAGCCGTAACGGCGA
66 AAAGATTGAAGCCGTAACGGCGA
* * * *
35230 ATAGAGTTATGGAGGGAAAGGTTAAAGCCGTGACGGTGAACCTTGTACCTTGGAGATTTGATGGG
1 ATAGAGTTATGGAGGGAAAGGTTAAAGCCGCGACGGCGAACCTTGTACCTTAGAAATTTGATGGG
* *
35295 AAAGATTGAAGCCGCAACAATGAATCTTGTA
66 AAAGATTGAAGCCGTAAC---G--GC--G-A
* * * * * * *
35326 CCATAGAGTTGTGGAGTGAAAGGTTGAAGTCGCGACGACAAACCTTGTACCTTAGAAATGTGATG
1 --ATAGAGTTATGGAGGGAAAGGTTAAAGCCGCGACGGCGAACCTTGTACCTTAGAAATTTGATG
* *
35391 GGAAAGATTGAAGTCGTAACGACGA
64 GGAAAGATTGAAGCCGTAACGGCGA
35416 AT
1 AT
35418 CTTATACCAT
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
88 76 0.49
90 1 0.01
91 2 0.01
93 2 0.01
95 2 0.01
96 1 0.01
98 70 0.45
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (88 bp):
ATAGAGTTATGGAGGGAAAGGTTAAAGCCGCGACGGCGAACCTTGTACCTTAGAAATTTGATGGG
AAAGATTGAAGCCGTAACGGCGA
Found at i:35372 original size:186 final size:186
Alignment explanation
Indices: 35044--35417 Score: 541
Period size: 186 Copynumber: 2.0 Consensus size: 186
35034 ATCTTGTACC
* *
35044 ATAGAGTTGTGGAGGGAAAGATTAAAGTCGCAACGACGAACCTTATACCTTAGAAATGTAATGGG
1 ATAGAGTTATGGAGGGAAAGATTAAAGCCGCAACGACGAACCTTATACCTTAGAAATGTAATGGG
* ** * *
35109 AAAGATTGAAGCCGTAACGGTGAATTTTGTACCATAGAGTTGTGGAGGGAAAGGTTGAAGTTGCG
66 AAAGATTGAAGCCGCAACAATGAATCTTGTACCATAGAGTTGTGGAGGGAAAGGTTGAAGTCGCG
* * * *
35174 ACGGCGAACCTTGTACCTTAGAAATTTGATGGGAAAGATTGAAGCCGTAACGGCGA
131 ACGACAAACCTTGTACCTTAGAAATGTGATGGGAAAGATTGAAGCCGTAACGACGA
* ** ** * * * * *
35230 ATAGAGTTATGGAGGGAAAGGTTAAAGCCGTGACGGTGAACCTTGTACCTTGGAGATTTGATGGG
1 ATAGAGTTATGGAGGGAAAGATTAAAGCCGCAACGACGAACCTTATACCTTAGAAATGTAATGGG
*
35295 AAAGATTGAAGCCGCAACAATGAATCTTGTACCATAGAGTTGTGGAGTGAAAGGTTGAAGTCGCG
66 AAAGATTGAAGCCGCAACAATGAATCTTGTACCATAGAGTTGTGGAGGGAAAGGTTGAAGTCGCG
*
35360 ACGACAAACCTTGTACCTTAGAAATGTGATGGGAAAGATTGAAGTCGTAACGACGA
131 ACGACAAACCTTGTACCTTAGAAATGTGATGGGAAAGATTGAAGCCGTAACGACGA
35416 AT
1 AT
35418 CTTATACCAT
Statistics
Matches: 165, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
186 165 1.00
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (186 bp):
ATAGAGTTATGGAGGGAAAGATTAAAGCCGCAACGACGAACCTTATACCTTAGAAATGTAATGGG
AAAGATTGAAGCCGCAACAATGAATCTTGTACCATAGAGTTGTGGAGGGAAAGGTTGAAGTCGCG
ACGACAAACCTTGTACCTTAGAAATGTGATGGGAAAGATTGAAGCCGTAACGACGA
Found at i:35445 original size:284 final size:284
Alignment explanation
Indices: 34953--35511 Score: 796
Period size: 284 Copynumber: 2.0 Consensus size: 284
34943 ACCATGGAAA
* * *
34953 TATGGAGGGAAAGGTTGAAGCCACAAGGGCGAACCTTGTACCTTTGAGATATGATGGGAAAGATT
1 TATGGAGGGAAAGGTTAAAGCCACAACGGCGAACCTTGTACCTTGGAGATATGATGGGAAAGATT
** *
35018 AAAGCCACAACGGTGAATCTTGTACCATAGAGTTGTGGAGGGAAAGATTAAAGTCGCAACGACGA
66 AAAGCCACAACAATGAATCTTGTACCATAGAGTTGTGGAGGGAAAGATTAAAGTCGCAACGACAA
** * *
35083 ACCTTATACCTTAGAAATGTAATGGGAAAGATTGAAGCCGTAACGGTGAATTTTGTACCATAGAG
131 ACCTTATACCTTAGAAATGTAATGGGAAAGATTGAAGCCGTAACGACGAATCTTATACCATAGAG
*** * * *
35148 TTGTGGAGGGAAAGGTTGAAGTTGCGACGGCGAACCTTGTACCTTAGAAAT-TTGATGGGAAAGA
196 TTGTGGAGGGAAAGGTTGAAGCCACAACGGCGAACCTTGTACCATAGAAATATAGA-GGGAAAGA
35212 TTGAAGCCGTAACGGCGAATAGAGT
260 TTGAAGCCGTAACGGCGAATAGAGT
*** * *
35237 TATGGAGGGAAAGGTTAAAGCCGTGACGGTGAACCTTGTACCTTGGAGATTTGATGGGAAAGATT
1 TATGGAGGGAAAGGTTAAAGCCACAACGGCGAACCTTGTACCTTGGAGATATGATGGGAAAGATT
* * * * * *
35302 GAAGCCGCAACAATGAATCTTGTACCATAGAGTTGTGGAGTGAAAGGTTGAAGTCGCGACGACAA
66 AAAGCCACAACAATGAATCTTGTACCATAGAGTTGTGGAGGGAAAGATTAAAGTCGCAACGACAA
* * *
35367 ACCTTGTACCTTAGAAATGTGATGGGAAAGATTGAAGTCGTAACGACGAATCTTATACCATAGAG
131 ACCTTATACCTTAGAAATGTAATGGGAAAGATTGAAGCCGTAACGACGAATCTTATACCATAGAG
* * * *
35432 TTGTGGAGGGAAAGGTTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATAGAGGGAAAGGT
196 TTGTGGAGGGAAAGGTTGAAGCCACAACGGCGAACCTTGTACCATAGAAATATAGAGGGAAAGAT
35497 TGAAGCCGTAACGGC
261 TGAAGCCGTAACGGC
35512 AAACCTTATA
Statistics
Matches: 240, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
284 237 0.99
285 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (284 bp):
TATGGAGGGAAAGGTTAAAGCCACAACGGCGAACCTTGTACCTTGGAGATATGATGGGAAAGATT
AAAGCCACAACAATGAATCTTGTACCATAGAGTTGTGGAGGGAAAGATTAAAGTCGCAACGACAA
ACCTTATACCTTAGAAATGTAATGGGAAAGATTGAAGCCGTAACGACGAATCTTATACCATAGAG
TTGTGGAGGGAAAGGTTGAAGCCACAACGGCGAACCTTGTACCATAGAAATATAGAGGGAAAGAT
TGAAGCCGTAACGGCGAATAGAGT
Found at i:35614 original size:147 final size:147
Alignment explanation
Indices: 35294--35615 Score: 330
Period size: 147 Copynumber: 2.2 Consensus size: 147
35284 GATTTGATGG
* * * * * *
35294 GAAAGATTGAAGCCGCAACAA-TGAATCTTGTACCATAGAGTTGTGGAGTGAAAGGTTGAAGTCG
1 GAAAGATTGAAGCCACAA-AAGTGAATCTTGTACCATAGAGATATAGAGGGAAAGGTTGAAGCCG
* * * * * ** *
35358 CGACGACAAACCTTGTACCTTAGAAATGTGATGGGAAAGATTGAAGTCGTAACGACGAATCTTAT
65 CAACGACAAACCTTATACCTTAGAAATGTGAAGGGAAAGATTAAAGCCACAACGACGAATCTTAC
** * *
35423 ACCATAGAGTTGTGGAGG
130 ACCATAGAAATGAGGAGA
* ** * * *
35441 GAAAGGTTGAAGCCACAACGGCGAATCTTGTACCATGGAGATATAGAGGGAAAGGTTGAAGCCGT
1 GAAAGATTGAAGCCACAAAAGTGAATCTTGTACCATAGAGATATAGAGGGAAAGGTTGAAGCCGC
*
35506 AACGGCAAACCTTATACCTTA-AAGATGTGAAGGGAAAGATTAAAGCCACAACGACGAATCTTAC
66 AACGACAAACCTTATACCTTAGAA-ATGTGAAGGGAAAGATTAAAGCCACAACGACGAATCTTAC
35570 ATCC-T-GAAAATGAGGAGCA
130 A-CCATAG-AAATGAGGAG-A
*
35589 G-TAGATTGAAGCCACAAAAGTGAATCT
1 GAAAGATTGAAGCCACAAAAGTGAATCT
35616 CAAGACTGTA
Statistics
Matches: 140, Mismatches: 30, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
146 3 0.02
147 134 0.96
148 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (147 bp):
GAAAGATTGAAGCCACAAAAGTGAATCTTGTACCATAGAGATATAGAGGGAAAGGTTGAAGCCGC
AACGACAAACCTTATACCTTAGAAATGTGAAGGGAAAGATTAAAGCCACAACGACGAATCTTACA
CCATAGAAATGAGGAGA
Found at i:37359 original size:30 final size:30
Alignment explanation
Indices: 37324--37419 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
37314 TATTTTATTT
* *
37324 AAAATTAGTGTTTTAGCCTTAAACTTTCCA
1 AAAATTAGTGTTTTACCCTTAAAATTTCCA
* * *
37354 AAAATTACGT-TTTGACCCCTAAAATTTCTA
1 AAAATTA-GTGTTTTACCCTTAAAATTTCCA
*
37384 AAAATTA-TGTTTTGACCCTCAAAATTTCCA
1 AAAATTAGTGTTTT-ACCCTTAAAATTTCCA
37414 AAAATT
1 AAAATT
37420 CTAATTTGGC
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
28 1 0.02
29 3 0.06
30 48 0.89
31 2 0.04
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (30 bp):
AAAATTAGTGTTTTACCCTTAAAATTTCCA
Found at i:37433 original size:30 final size:30
Alignment explanation
Indices: 37348--37433 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 30
37338 AGCCTTAAAC
***
37348 TTTCCAAAAATTACGTTTTGACCC-CTAAAA
1 TTTCCAAAAATTATAATTTGACCCTC-AAAA
* **
37378 TTTCTAAAAATTATGTTTTGACCCTCAAAA
1 TTTCCAAAAATTATAATTTGACCCTCAAAA
* *
37408 TTTCCAAAAATTCTAATTTGGCCCTC
1 TTTCCAAAAATTATAATTTGACCCTC
37434 GAACTATCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 47 0.98
31 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (30 bp):
TTTCCAAAAATTATAATTTGACCCTCAAAA
Found at i:37637 original size:15 final size:14
Alignment explanation
Indices: 37599--37640 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
37589 TCACATTGCG
*
37599 TATTTTGTTTATTT
1 TATTTTGTGTATTT
37613 TATTTT-TGTATATT
1 TATTTTGTGTAT-TT
*
37627 TGTTTTGTGTATTT
1 TATTTTGTGTATTT
37641 ATTACTCGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 15 0.62
15 5 0.21
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.74
Consensus pattern (14 bp):
TATTTTGTGTATTT
Found at i:44614 original size:20 final size:20
Alignment explanation
Indices: 44572--44614 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
44562 ACTTTCATAA
* * *
44572 TTAAGCTTAATTAACCCTTT
1 TTAACCTTAAGTAACCCTAT
*
44592 TTAACCTTAAGTAATCCTAT
1 TTAACCTTAAGTAACCCTAT
44612 TTA
1 TTA
44615 TATTCAATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (20 bp):
TTAACCTTAAGTAACCCTAT
Found at i:58672 original size:12 final size:13
Alignment explanation
Indices: 58631--58672 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
58621 AATAAAGTAT
*
58631 AATTGTAAAATAAA
1 AATTGTAATA-AAA
*
58645 AATTGTAATAAGA
1 AATTGTAATAAAA
58658 AATTGT-ATAAAA
1 AATTGTAATAAAA
58670 AAT
1 AAT
58673 AACATAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 8 0.32
13 8 0.32
14 9 0.36
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (13 bp):
AATTGTAATAAAA
Found at i:59812 original size:28 final size:29
Alignment explanation
Indices: 59772--60075 Score: 173
Period size: 29 Copynumber: 10.9 Consensus size: 29
59762 ATTTGAGGTC
* **
59772 AAAAAT-GAGATTTTTGAAAGTTCGGGGGT
1 AAAAATGGA-ATTTTTGGAAGTTTAGGGGT
*
59801 -AAAATGGAATTTTTGGAAGTTTTGGGGT
1 AAAAATGGAATTTTTGGAAGTTTAGGGGT
* *
59829 CAAAATGGGATTTTTGGAAGTTTAGGGGT
1 AAAAATGGAATTTTTGGAAGTTTAGGGGT
*
59858 AAAAATAGAA---TT-----TTTA-GGGT
1 AAAAATGGAATTTTTGGAAGTTTAGGGGT
* * *
59878 CAAAAATGGGATTTTTAGAAGTTTTTGGGGT
1 -AAAAATGGAATTTTTGGAAG-TTTAGGGGT
*
59909 CAAAAATAGG-ATTTTTGGAAGTTTAAGGGT
1 -AAAAAT-GGAATTTTTGGAAGTTTAGGGGT
* * *
59939 AAAAATGGAATTTTGGGGAGTTTTGGGGT
1 AAAAATGGAATTTTTGGAAGTTTAGGGGT
* **
59968 -CAAA---AA----TGGAAGTTCGGGGGT
1 AAAAATGGAATTTTTGGAAGTTTAGGGGT
* *
59989 AAAAATAGAATTTTTGGAAGTTTCGGGGTT
1 AAAAATGGAATTTTTGGAAGTTTAGGGG-T
* * * *
60019 AAAAATGGGATATTTGGAAG-TTCGAGAGT
1 AAAAATGGAATTTTTGGAAGTTTAG-GGGT
*
60048 AAAAACGGAATTTTTGGAAGGTTTAGGG
1 AAAAATGGAATTTTTGGAA-GTTTAGGG
60076 ACCTCCGGGA
Statistics
Matches: 213, Mismatches: 35, Indels: 53
0.71 0.12 0.18
Matches are distributed among these distances:
20 4 0.02
21 23 0.11
22 3 0.01
24 2 0.01
25 4 0.02
26 2 0.01
28 27 0.13
29 90 0.42
30 32 0.15
31 24 0.11
32 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.33
Consensus pattern (29 bp):
AAAAATGGAATTTTTGGAAGTTTAGGGGT
Found at i:59875 original size:21 final size:22
Alignment explanation
Indices: 59849--59895 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
59839 TTTTTGGAAG
59849 TTTAGGGGT-AAAAATAGAATT
1 TTTAGGGGTCAAAAATAGAATT
* *
59870 TTTA-GGGTCAAAAATGGGATT
1 TTTAGGGGTCAAAAATAGAATT
59891 TTTAG
1 TTTAG
59896 AAGTTTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (22 bp):
TTTAGGGGTCAAAAATAGAATT
Found at i:59899 original size:50 final size:51
Alignment explanation
Indices: 59820--59924 Score: 151
Period size: 50 Copynumber: 2.1 Consensus size: 51
59810 TTTTTGGAAG
* *
59820 TTTTGGGGTCAAAATGGGATTTTTGGAAG-TTTAGGGGT-AAAAATAGAAT
1 TTTTAGGGTCAAAATGGGATTTTTAGAAGTTTTAGGGGTCAAAAATAGAAT
* *
59869 TTTTAGGGTCAAAAATGGGATTTTTAGAAGTTTTTGGGGTCAAAAATAGGAT
1 TTTTAGGGTC-AAAATGGGATTTTTAGAAGTTTTAGGGGTCAAAAATAGAAT
59921 TTTT
1 TTTT
59925 GGAAGTTTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 9 0.18
50 18 0.37
51 8 0.16
52 14 0.29
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (51 bp):
TTTTAGGGTCAAAATGGGATTTTTAGAAGTTTTAGGGGTCAAAAATAGAAT
Found at i:59903 original size:31 final size:30
Alignment explanation
Indices: 59863--59976 Score: 122
Period size: 31 Copynumber: 3.8 Consensus size: 30
59853 GGGGTAAAAA
*
59863 TAGAATTTTTAGGGTCAAAAATGGGATTTT
1 TAGAAGTTTTAGGGTCAAAAATGGGATTTT
* *
59893 TAGAAGTTTTTGGGGTCAAAAATAGGATTTT
1 TAGAAG-TTTTAGGGTCAAAAATGGGATTTT
* * *
59924 TGGAAGTTTAAGGGT-AAAAATGGAATTTT
1 TAGAAGTTTTAGGGTCAAAAATGGGATTTT
** * *
59953 GGGGAGTTTTGGGGTCAAAAATGG
1 TAGAAGTTTTAGGGTCAAAAATGG
59977 AAGTTCGGGG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 23 0.33
30 20 0.29
31 27 0.39
ACGTcount: A:0.32, C:0.03, G:0.30, T:0.35
Consensus pattern (30 bp):
TAGAAGTTTTAGGGTCAAAAATGGGATTTT
Found at i:59932 original size:81 final size:79
Alignment explanation
Indices: 59801--59952 Score: 241
Period size: 81 Copynumber: 1.9 Consensus size: 79
59791 GTTCGGGGGT
* * *
59801 AAAATGGAATTTTTGGAAGTTTTGGGGTCAAAATGGGATTTTTGGAAGTTTAGGGGTAAAAATAG
1 AAAATGGAATTTTTAGAAGTTTTGGGGTCAAAATAGGATTTTTGGAAGTTTAAGGGTAAAAATAG
59866 AATTTTTAGGGTCA
66 AATTTTTAGGGTCA
*
59880 AAAATGGGATTTTTAGAAGTTTTTGGGGTCAAAAATAGGATTTTTGGAAGTTTAAGGGTAAAAAT
1 AAAATGGAATTTTTAGAAG-TTTTGGGGTC-AAAATAGGATTTTTGGAAGTTTAAGGGTAAAAAT
*
59945 GGAATTTT
64 AGAATTTT
59953 GGGGAGTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
79 17 0.26
80 10 0.15
81 39 0.59
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (79 bp):
AAAATGGAATTTTTAGAAGTTTTGGGGTCAAAATAGGATTTTTGGAAGTTTAAGGGTAAAAATAG
AATTTTTAGGGTCA
Found at i:59944 original size:110 final size:107
Alignment explanation
Indices: 59768--60075 Score: 300
Period size: 110 Copynumber: 2.8 Consensus size: 107
59758 AAAAATTTGA
* ** *
59768 GGTCAAAAATGAGATTTTTGAAAG-TTCGGGGGT-AAAATGGAATTTTTGGAAGTTTTGGGGTCA
1 GGTCAAAAATGGGATTTTTG-AAGTTTC-GGGGTAAAAATGG-ATTTTTGGAAGTTTAAGGGTAA
* * **
59831 AAATGGGATTTTTGGAAGTTTAGGGGT-AAAAATAGAATTTTTAG
63 AAATGGAATTTTTGGAAGTTTAGGGGTCAAAAATAGAAGTTCGAG
*
59875 GGTCAAAAATGGGATTTTTAGAAGTTTTTGGGGTCAAAAATAGGATTTTTGGAAGTTTAAGGGTA
1 GGTCAAAAATGGGATTTTT-GAAG-TTTCGGGGT-AAAAAT-GGATTTTTGGAAGTTTAAGGGTA
* * * * *
59940 AAAATGGAATTTTGGGGAGTTTTGGGGTCAAAAATGGAAGTTCGGG
62 AAAATGGAATTTTTGGAAGTTTAGGGGTCAAAAATAGAAGTTCGAG
* * * ** *
59986 GGT-AAAAATAGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATATTTGGAAGTTCGAGAGTAA
1 GGTCAAAAATGGGATTTTT-GAAGTTTCGGGG-TAAAAAT-GGATTTTTGGAAGTTTAAGGGTAA
*
60050 AAACGGAATTTTTGGAAGGTTTAGGG
63 AAATGGAATTTTTGGAA-GTTTAGGG
60076 ACCTCCGGGA
Statistics
Matches: 165, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
107 21 0.13
108 6 0.04
109 49 0.30
110 72 0.44
111 17 0.10
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.33
Consensus pattern (107 bp):
GGTCAAAAATGGGATTTTTGAAGTTTCGGGGTAAAAATGGATTTTTGGAAGTTTAAGGGTAAAAA
TGGAATTTTTGGAAGTTTAGGGGTCAAAAATAGAAGTTCGAG
Found at i:59981 original size:50 final size:50
Alignment explanation
Indices: 59924--60026 Score: 134
Period size: 50 Copynumber: 2.1 Consensus size: 50
59914 ATAGGATTTT
* * * *
59924 TGGAAGTTTAAGGGTAAAAATGGAATTTTGGGGAGTTTTGGGGTCAAAAA
1 TGGAAGTTCAAGGGTAAAAATAGAATTTTGGGAAGTTTCGGGGTCAAAAA
** * *
59974 TGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAGTTTCGGGGTTAAAAA
1 TGGAAGTTCAAGGGTAAAAATAGAATTTTGGGAAGTTTCGGGGTCAAAAA
60024 TGG
1 TGG
60027 GATATTTGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.33, C:0.03, G:0.34, T:0.30
Consensus pattern (50 bp):
TGGAAGTTCAAGGGTAAAAATAGAATTTTGGGAAGTTTCGGGGTCAAAAA
Found at i:61855 original size:18 final size:18
Alignment explanation
Indices: 61823--61927 Score: 115
Period size: 18 Copynumber: 5.9 Consensus size: 18
61813 TTTAGTTTTA
* *
61823 TTTATAATAATTTTAAAT
1 TTTAAAATAAATTTAAAT
*
61841 TTGAAAATAAATTTAAA-
1 TTTAAAATAAATTTAAAT
* *
61858 CTTAAATTAAATTTAAA-
1 TTTAAAATAAATTTAAAT
*
61875 TTCAAAATAAATTTAAAT
1 TTTAAAATAAATTTAAAT
* * *
61893 TTTTAAACAAATTTAATT
1 TTTAAAATAAATTTAAAT
61911 TTTAAAATAAATTTAAA
1 TTTAAAATAAATTTAAA
61928 AGGAGTTTGG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
17 28 0.40
18 42 0.60
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (18 bp):
TTTAAAATAAATTTAAAT
Found at i:61862 original size:6 final size:6
Alignment explanation
Indices: 61834--61894 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
61824 TTATAATAAT
* * *
61834 TTTAAA TTTGAAA -ATAAA TTTAAA CTTAAA -TTAAA TTTAAA TTCAAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
61881 -ATAAA TTTAAA TTT
1 TTTAAA TTTAAA TTT
61895 TTAAACAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
5 11 0.25
6 30 0.68
7 3 0.07
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (6 bp):
TTTAAA
Found at i:61873 original size:11 final size:11
Alignment explanation
Indices: 61835--61893 Score: 57
Period size: 11 Copynumber: 5.2 Consensus size: 11
61825 TATAATAATT
61835 TTAAATTTGAAA
1 TTAAATTT-AAA
*
61847 ATAAATTTAAA
1 TTAAATTTAAA
61858 CTTAAA-TTAAA
1 -TTAAATTTAAA
*
61869 TTTAAATTCAAA
1 -TTAAATTTAAA
*
61881 ATAAATTTAAA
1 TTAAATTTAAA
61892 TT
1 TT
61894 TTTAAACAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
11 23 0.61
12 15 0.39
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:61890 original size:52 final size:53
Alignment explanation
Indices: 61828--61927 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 53
61818 TTTTATTTAT
* * *
61828 AATAATTTTAAATTTGAAAATAAATTTAA-ACTTAAATTAAATTTAAATTCAA
1 AATAAATTTAAATTTGAAAACAAATTTAATACTTAAAATAAATTTAAATTCAA
** **
61880 AATAAATTTAAATTTTTAAACAAATTTAATTTTTAAAATAAATTTAAA
1 AATAAATTTAAATTTGAAAACAAATTTAATACTTAAAATAAATTTAAA
61928 AGGAGTTTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 25 0.62
53 15 0.38
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (53 bp):
AATAAATTTAAATTTGAAAACAAATTTAATACTTAAAATAAATTTAAATTCAA
Found at i:62644 original size:146 final size:146
Alignment explanation
Indices: 62380--62669 Score: 490
Period size: 146 Copynumber: 2.0 Consensus size: 146
62370 AGCTAACCGC
* *
62380 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACAT
1 TTTATTACTTCGACCTGCTTCTCAGTGTCCCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACAT
* *
62445 CAGACGTGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCGGGAAGATGACTGCGTCGTCTGTT
66 CAGACGTGAGTTTGATTTGGTCTTCTTCTCAATATCTCATCGGGAAGATGACTGCGTCATCTGTT
62510 TCAATTCGCTTCTCGT
131 TCAATTCGCTTCTCGT
*
62526 TTTATTACTTCGACTTGCTTCTCAGTGTCCCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACAT
1 TTTATTACTTCGACCTGCTTCTCAGTGTCCCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACAT
* ** * *
62591 CGGGTGTGATTTTGATTTGGTCTTCTTCTCAATATCTCATCGGGAAGATGACTGCGTCATTTGTT
66 CAGACGTGAGTTTGATTTGGTCTTCTTCTCAATATCTCATCGGGAAGATGACTGCGTCATCTGTT
62656 TCAATTCGCTTCTC
131 TCAATTCGCTTCTC
62670 TGTATCTCAT
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
146 134 1.00
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (146 bp):
TTTATTACTTCGACCTGCTTCTCAGTGTCCCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACAT
CAGACGTGAGTTTGATTTGGTCTTCTTCTCAATATCTCATCGGGAAGATGACTGCGTCATCTGTT
TCAATTCGCTTCTCGT
Found at i:63386 original size:27 final size:28
Alignment explanation
Indices: 63351--63407 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
63341 ATTCTATTAA
* *
63351 AAAAAGAGGATCGAAGGAAACAAT-ATT
1 AAAAAGAGGATCAAAGAAAACAATCATT
*
63378 AAAAAGAGGGTCAAAGAAAACAATCATT
1 AAAAAGAGGATCAAAGAAAACAATCATT
63406 AA
1 AA
63408 TTGAAAATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.58, C:0.09, G:0.19, T:0.14
Consensus pattern (28 bp):
AAAAAGAGGATCAAAGAAAACAATCATT
Done.