Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009889.1 Kokia drynarioides strain JFW-HI SEQ_124625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3131
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:2731 original size:25 final size:24

Alignment explanation


    Indices: 2686--2734  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2676 ACCCACAGGA

                          * *       
       2686 ATTAGAAAAAAGAATTTAATAATT
          1 ATTAGAAAAAAGAAGTAAATAATT

                *                    
       2710 ATTATAAAAAAGATAGTAAATAATT
          1 ATTAGAAAAAAGA-AGTAAATAATT

       2735 CTATCATAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24   12  0.57
  25    9  0.43

ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33


Consensus pattern (24 bp):   
ATTAGAAAAAAGAAGTAAATAATT
Done.