Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009903.1 Kokia drynarioides strain JFW-HI SEQ_124641, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1100
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39


Found at i:378 original size:21 final size:21

Alignment explanation


    Indices: 354--408  Score: 56
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        344 TTAAAACATT

                                 
        354 TATTATTAATGCCTTTATTAA
          1 TATTATTAATGCCTTTATTAA

                 *    ***       *
        375 TATTAATAATAATTTTATTAG
          1 TATTATTAATGCCTTTATTAA

                         
        396 TATCTATTAATGC
          1 TAT-TATTAATGC

        409 TAATTTTTAT


Statistics
Matches: 25,  Mismatches: 8, Indels: 1
        0.74            0.24        0.03

Matches are distributed among these distances:
  21   19  0.76
  22    6  0.24

ACGTcount: A:0.36, C:0.07, G:0.05, T:0.51


Consensus pattern (21 bp):   
TATTATTAATGCCTTTATTAA
Done.