genome.fa.s9906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009906.1 Kokia drynarioides strain JFW-HI SEQ_124644, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55698

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4269--4295	2	13.5	2	100	0	54	48	0	0	51	1.00
5223--5306	24	3.4	25	76	17	77	28	4	4	61	1.36
5247--5305	25	2.3	25	76	2	64	23	5	6	64	1.38
5224--5308	26	3.4	26	78	15	83	28	4	4	62	1.36
9699--9741	22	2.0	22	85	0	59	83	0	13	2	0.74
9702--9743	17	2.4	17	88	8	57	83	0	14	2	0.75
9701--9743	9	4.7	9	80	13	52	83	0	13	2	0.74
11690--11736	21	2.3	20	92	3	76	38	29	19	12	1.89
11743--11801	23	2.5	23	88	2	82	44	16	25	13	1.85
13751--13780	14	2.1	14	100	0	60	6	20	13	60	1.55
18902--18970	23	3.0	22	87	4	93	36	28	23	11	1.90
22388--23331	99	9.7	99	73	8	677	35	18	20	25	1.95
22865--23044	89	2.0	89	84	0	234	36	18	19	26	1.94
22386--23242	287	3.0	286	80	4	976	35	18	20	25	1.95
22367--23323	198	4.9	198	77	6	923	35	18	20	25	1.95
23374--23733	50	7.2	50	81	0	344	35	17	25	21	1.95
23374--23733	100	3.6	99	82	4	384	35	17	25	21	1.95
23413--23733	101	3.2	100	83	5	373	35	18	23	22	1.96
23413--23733	151	2.1	149	81	4	367	35	18	23	22	1.96
23922--23963	14	3.2	13	90	6	59	80	16	0	2	0.81
24867--24923	30	1.9	30	85	7	80	59	1	14	24	1.44
25367--25411	22	2.0	22	82	8	54	26	6	4	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28257--28294	12	3.1	12	92	3	58	63	2	2	31	1.22
28358--28387	12	2.6	11	90	10	51	50	3	0	46	1.18
33939--34036	50	2.1	48	84	9	130	47	6	9	36	1.60
33955--34055	50	2.0	50	98	0	193	47	5	7	38	1.57
36989--37019	3	10.3	3	92	0	53	70	0	29	0	0.87
37591--37806	111	1.9	112	94	1	380	56	10	15	18	1.67
38616--38735	55	2.2	55	81	3	143	32	15	33	18	1.93
38671--38861	80	2.4	79	84	1	247	31	17	30	20	1.96
54292--54466	96	1.8	96	85	4	246	40	14	17	28	1.89
54706--55164	59	7.8	58	80	8	286	33	5	28	32	1.80
54827--55202	30	12.7	30	83	6	439	34	3	27	34	1.75
54827--55203	59	6.4	60	87	4	457	33	3	27	34	1.76

Tables:   1

The End!