Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009908.1 Kokia drynarioides strain JFW-HI SEQ_124646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1757
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29


Found at i:838 original size:45 final size:45

Alignment explanation


    Indices: 776--898  Score: 237
    Period size: 45  Copynumber: 2.7  Consensus size: 45

        766 ACATAGCTCA

                                   *                     
        776 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                         
        821 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                             
        866 TCAAGCCAAGGATATCAGCCTCAATTTGACGAG
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAG

        899 GCATCGCGAT


Statistics
Matches: 77,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  45   77  1.00

ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
Done.