Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000991.1 Kokia drynarioides strain JFW-HI SEQ_112188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2228
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Found at i:1050 original size:15 final size:16

Alignment explanation


    Indices: 1030--1059  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1020 TAATAAATTA

                            
       1030 AAAGAAATTA-ATTTG
          1 AAAGAAATTACATTTG

                           
       1045 AAAGAAATTACATTT
          1 AAAGAAATTACATTT

       1060 TACTTTATTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15   10  0.71
  16    4  0.29

ACGTcount: A:0.53, C:0.03, G:0.10, T:0.33


Consensus pattern (16 bp):   
AAAGAAATTACATTTG
Done.