Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009913.1 Kokia drynarioides strain JFW-HI SEQ_124653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4360
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:2322 original size:16 final size:16

Alignment explanation


    Indices: 2301--2351  Score: 84
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       2291 AATCTAGTAT

                           *
       2301 TTTATTTACTAGTGTG
          1 TTTATTTACTAGTGTA

                            
       2317 TTTATTTACTAGTGTA
          1 TTTATTTACTAGTGTA

                        *   
       2333 TTTATTTACTAGCGTA
          1 TTTATTTACTAGTGTA

               
       2349 TTT
          1 TTT

       2352 GCTCTTTCTT


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   33  1.00

ACGTcount: A:0.22, C:0.08, G:0.14, T:0.57


Consensus pattern (16 bp):   
TTTATTTACTAGTGTA
Done.