Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009922.1 Kokia drynarioides strain JFW-HI SEQ_124662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1255
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30


Found at i:289 original size:26 final size:26

Alignment explanation


    Indices: 253--306  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        243 CTCTAGCTCG

                                      
        253 TACGCTGTAGGAATATTAAGAAAACA
          1 TACGCTGTAGGAATATTAAGAAAACA

                                      
        279 TACGCTGTAGGAATATTAAGAAAACA
          1 TACGCTGTAGGAATATTAAGAAAACA

              
        305 TA
          1 TA

        307 AGTTACAGTC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.46, C:0.11, G:0.19, T:0.24


Consensus pattern (26 bp):   
TACGCTGTAGGAATATTAAGAAAACA
Done.