Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009926.1 Kokia drynarioides strain JFW-HI SEQ_124667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18529
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31


Found at i:17542 original size:2 final size:2

Alignment explanation


    Indices: 17535--17569  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

      17525 TGTCCTGCTC

                                                                
      17535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

      17570 ACAAATTAGC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:17660 original size:23 final size:23

Alignment explanation


    Indices: 17629--17673  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 23

      17619 GACTAGCTTC

                *      *           
      17629 TTAATTTCTATGAAATAAAATTA
          1 TTAAATTCTATCAAATAAAATTA

                            *     
      17652 TTAAATTCTATCAAATTAAATT
          1 TTAAATTCTATCAAATAAAATT

      17674 CTAATTCAAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44


Consensus pattern (23 bp):   
TTAAATTCTATCAAATAAAATTA
Done.