Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009927.1 Kokia drynarioides strain JFW-HI SEQ_124668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2001
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1402 original size:24 final size:26

Alignment explanation


    Indices: 1375--1422  Score: 66
    Period size: 24  Copynumber: 1.9  Consensus size: 26

       1365 AGAGAAATGT

                                       
       1375 AAATG-TGATATATGA-A-ATTATGAG
          1 AAATGATGA-ATATGAGAGATTATGAG

                                    
       1399 AAATGATGAATATGAGAGATTATG
          1 AAATGATGAATATGAGAGATTATG

       1423 CCCATGTAGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  24   11  0.52
  25    4  0.19
  26    6  0.29

ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31


Consensus pattern (26 bp):   
AAATGATGAATATGAGAGATTATGAG

Found at i:1521 original size:25 final size:22

Alignment explanation


    Indices: 1489--1559  Score: 79
    Period size: 23  Copynumber: 3.0  Consensus size: 22

       1479 TAGCGCGCTT

                                *  
       1489 TCTGATTAGCACTGTGTGTGTTC
          1 TCTGATTAGCACT-TGTGTGCTC

                              *      
       1512 TCTGTTATTAGCACTTCGCGTGCTC
          1 TCTG--ATTAGCACTT-GTGTGCTC

                                   
       1537 TCTGATTAGCACTTTGTGTGCTC
          1 TCTGATTAGCAC-TTGTGTGCTC

       1560 GGTACTTTGT


Statistics
Matches: 41,  Mismatches: 3, Indels: 8
        0.79            0.06        0.15

Matches are distributed among these distances:
  23   19  0.46
  24    3  0.07
  25   19  0.46

ACGTcount: A:0.13, C:0.23, G:0.23, T:0.42


Consensus pattern (22 bp):   
TCTGATTAGCACTTGTGTGCTC
Done.