Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009936.1 Kokia drynarioides strain JFW-HI SEQ_124677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125212
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2 characters in sequence are not A, C, G, or T
Found at i:1542 original size:45 final size:45
Alignment explanation
Indices: 1476--1612 Score: 206
Period size: 45 Copynumber: 3.0 Consensus size: 45
1466 GGGAGGAATA
* *
1476 GAGTATCGCGGTGGCTTGTCAAACTCA-GCTTGATATCCTTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAACTCAGGC-TGATATCCTTGGCTT
1521 GAGTATTGCGGTGGCTCGTCAAA-TCGAGGCTGATATCCTTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAACTC-AGGCTGATATCCTTGGCTT
* *
1566 GAGCATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAACTCAGGCTGATATCCTTGGCTT
1611 GA
1 GA
1613 TGAGCTATGC
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
44 2 0.02
45 80 0.94
46 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (45 bp):
GAGTATTGCGGTGGCTCGTCAAACTCAGGCTGATATCCTTGGCTT
Found at i:3839 original size:20 final size:21
Alignment explanation
Indices: 3814--3856 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
3804 TACTTACTAC
3814 TACTAAC-AACAAAATAAAAT
1 TACTAACTAACAAAATAAAAT
* *
3834 TACTAACTAGCAAAATTAAAT
1 TACTAACTAACAAAATAAAAT
3855 TA
1 TA
3857 AAGTAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (21 bp):
TACTAACTAACAAAATAAAAT
Found at i:4264 original size:12 final size:12
Alignment explanation
Indices: 4239--4273 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
4229 CTTCTTCTCC
4239 TTCTTCTTTCTTCT
1 TTCTT-TTT-TTCT
4253 TTCTTTTTTTCT
1 TTCTTTTTTTCT
4265 TTCTTTTTT
1 TTCTTTTTT
4274 CCTTCAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 13 0.62
13 3 0.14
14 5 0.24
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTCTTTTTTTCT
Found at i:17181 original size:24 final size:23
Alignment explanation
Indices: 17122--17181 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
17112 CGTTTATTTA
17122 ATGTTCACGAACATTAAACGAAC
1 ATGTTCACGAACATTAAACGAAC
** **
17145 ATGTTCATTAACATATAATTGAAC
1 ATGTTCACGAACAT-TAAACGAAC
*
17169 ATGTTAACGAACA
1 ATGTTCACGAACA
17182 ATGTTAATGA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (23 bp):
ATGTTCACGAACATTAAACGAAC
Found at i:20188 original size:15 final size:15
Alignment explanation
Indices: 20168--20197 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20158 AATTCAACCG
20168 ATTTTTTAAATTTTT
1 ATTTTTTAAATTTTT
*
20183 ATTTTTTTAATTTTT
1 ATTTTTTAAATTTTT
20198 TAAATAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
ATTTTTTAAATTTTT
Found at i:20190 original size:16 final size:16
Alignment explanation
Indices: 20169--20199 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20159 ATTCAACCGA
20169 TTTTTTAAATTTTTAT
1 TTTTTTAAATTTTTAT
*
20185 TTTTTTAATTTTTTA
1 TTTTTTAAATTTTTA
20200 AATAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTAAATTTTTAT
Found at i:23120 original size:29 final size:29
Alignment explanation
Indices: 23071--23140 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
23061 GAGTCAAAAT
* *
23071 GTGATTTTTTGATGCTCGGGGGTAAAACG
1 GTGATTTTTAGATGCTCGGGGGCAAAACG
* **
23100 GTGA-TTTTAGATGCTTTGGGGGCAAAATA
1 GTGATTTTTAGATGC-TCGGGGGCAAAACG
*
23129 GTAATTTTTAGA
1 GTGATTTTTAGA
23141 AGGTTCAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
28 9 0.27
29 17 0.52
30 7 0.21
ACGTcount: A:0.26, C:0.07, G:0.30, T:0.37
Consensus pattern (29 bp):
GTGATTTTTAGATGCTCGGGGGCAAAACG
Found at i:23222 original size:30 final size:30
Alignment explanation
Indices: 23182--23322 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 30
23172 ATCTGAGGAT
*
23182 AAAATGGTAATTTTTGAAAAGTTCAGGGGCA
1 AAAAT-GTAATTTTTGGAAAGTTCAGGGGCA
* * *
23213 AAATTGTAATTTTTGGAAA-TTCAAGGTCA
1 AAAATGTAATTTTTGGAAAGTTCAGGGGCA
* * *
23242 AAAATG-AAATTTGGGAAAGTTCGAGGGGTA
1 AAAATGTAATTTTTGGAAAGTTC-AGGGGCA
23272 AAAATGTAATTTTTGGAAAGTT-AGGGGTCA
1 AAAATGTAATTTTTGGAAAGTTCAGGGG-CA
* *
23302 AAAATGGAA-TTTTGAAAAGTT
1 AAAATGTAATTTTTGGAAAGTT
23323 TGAGGCCAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
28 10 0.11
29 32 0.35
30 32 0.35
31 17 0.19
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.31
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAAGTTCAGGGGCA
Found at i:23253 original size:59 final size:60
Alignment explanation
Indices: 23193--23344 Score: 177
Period size: 59 Copynumber: 2.6 Consensus size: 60
23183 AAATGGTAAT
*
23193 TTTTGAAAAGTTC-AGGGGCAAAATTGTAATTTTTGGAAA-TTCA-AGGTCAAAAATGAAA
1 TTTTGAAAAGTTCGAGGGGCAAAAATGTAATTTTTGGAAAGTT-AGAGGTCAAAAATGAAA
* * * * *
23251 TTTGGGAAAGTTCGAGGGGTAAAAATGTAATTTTTGGAAAGTTAGGGGTCAAAAATGGAA
1 TTTTGAAAAGTTCGAGGGGCAAAAATGTAATTTTTGGAAAGTTAGAGGTCAAAAATGAAA
* * * *
23311 TTTTGAAAAGTTTGA-GGCCAAACATGAAATTTTT
1 TTTTGAAAAGTTCGAGGGGCAAAAATGTAATTTTT
23345 AGAAGATTCG
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
58 11 0.14
59 40 0.51
60 27 0.35
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (60 bp):
TTTTGAAAAGTTCGAGGGGCAAAAATGTAATTTTTGGAAAGTTAGAGGTCAAAAATGAAA
Found at i:23332 original size:29 final size:29
Alignment explanation
Indices: 23193--23343 Score: 83
Period size: 29 Copynumber: 5.1 Consensus size: 29
23183 AAATGGTAAT
* * *
23193 TTTTGAAAAGTTCAG-GGGCAAAATTGTAAT
1 TTTTGAAAAGTT-AGAGGCCAAAAATG-AAA
* *
23223 TTTTGGAAA-TTCA-AGGTCAAAAATGAAA
1 TTTTGAAAAGTT-AGAGGCCAAAAATGAAA
* * * ** *
23251 TTTGGGAAAGTTCGAGGGGTAAAAATGTAAT
1 TTTTGAAAAGTTAGA-GGCCAAAAATG-AAA
* * * *
23282 TTTTGGAAAGTTAGGGGTCAAAAATGGAA
1 TTTTGAAAAGTTAGAGGCCAAAAATGAAA
* *
23311 TTTTGAAAAGTTTGAGGCCAAACATGAAA
1 TTTTGAAAAGTTAGAGGCCAAAAATGAAA
23340 TTTT
1 TTTT
23344 TAGAAGATTC
Statistics
Matches: 94, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
28 10 0.11
29 44 0.47
30 26 0.28
31 14 0.15
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (29 bp):
TTTTGAAAAGTTAGAGGCCAAAAATGAAA
Found at i:23876 original size:80 final size:81
Alignment explanation
Indices: 23778--23941 Score: 201
Period size: 81 Copynumber: 2.0 Consensus size: 81
23768 GCAAATTTCC
* * * *
23778 CTCATTAAACTCCA-TTTTTTCATTTC-TCCAAACAATGTTTCTTTCCCTTT-TTTTT-AGTGCT
1 CTCATTAAACTCCATTTTTTTCATTTCAT-CAAAAAATATCTATTT--CTTTCTTTTTAAGTGCT
*
23839 CTCGATAGAGAGCTTCTCT
63 CTCGATAGAGAGCTTCCCT
* *
23858 CTCATTAAACTTCATTTTTTTCATTTCATTAAAAAATATCTATTTCTTTCTTTTTAAGTGCTCTC
1 CTCATTAAACTCCATTTTTTTCATTTCATCAAAAAATATCTATTTCTTTCTTTTTAAGTGCTCTC
*
23923 GATGGAGAGCTTCCCT
66 GATAGAGAGCTTCCCT
23939 CTC
1 CTC
23942 CATTCATTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 4 0.06
80 18 0.25
81 49 0.68
82 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (81 bp):
CTCATTAAACTCCATTTTTTTCATTTCATCAAAAAATATCTATTTCTTTCTTTTTAAGTGCTCTC
GATAGAGAGCTTCCCT
Found at i:25192 original size:17 final size:17
Alignment explanation
Indices: 25167--25260 Score: 91
Period size: 17 Copynumber: 5.5 Consensus size: 17
25157 TTTATATTTT
25167 ATTTCAAAATAAATTTAA
1 ATTT-AAAATAAATTTAA
25185 ATTTAAAAT-AATTTAA
1 ATTTAAAATAAATTTAA
* ** *
25201 ACTCCAAATAAACTTAA
1 ATTTAAAATAAATTTAA
*
25218 ATTTATAATAAATTTAA
1 ATTTAAAATAAATTTAA
* * *
25235 ACTTAAAATGAATTAAA
1 ATTTAAAATAAATTTAA
*
25252 ATATAAAAT
1 ATTTAAAAT
25261 CTAAAATTAG
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
16 13 0.22
17 43 0.72
18 4 0.07
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.36
Consensus pattern (17 bp):
ATTTAAAATAAATTTAA
Found at i:25218 original size:33 final size:34
Alignment explanation
Indices: 25173--25237 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
25163 TTTTATTTCA
*
25173 AAATAAATTTAAATTTAAAAT-AATTTAAACTCC
1 AAATAAACTTAAATTTAAAATAAATTTAAACTCC
*
25206 AAATAAACTTAAATTTATAATAAATTTAAACT
1 AAATAAACTTAAATTTAAAATAAATTTAAACT
25238 TAAAATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 19 0.66
34 10 0.34
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (34 bp):
AAATAAACTTAAATTTAAAATAAATTTAAACTCC
Found at i:25251 original size:33 final size:33
Alignment explanation
Indices: 25170--25260 Score: 103
Period size: 34 Copynumber: 2.7 Consensus size: 33
25160 ATATTTTATT
*
25170 TCAAAATAAATTTAAATTTAAAATAATTTAAAC
1 TCAAAATAAACTTAAATTTAAAATAATTTAAAC
* *
25203 TCCAAATAAACTTAAATTTATAATAAATTTAAAC
1 TCAAAATAAACTTAAATTTAAAAT-AATTTAAAC
* * *
25237 TTAAAATGAA-TTAAAATATAAAAT
1 TCAAAATAAACTT-AAATTTAAAAT
25261 CTAAAATTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
33 23 0.48
34 25 0.52
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.35
Consensus pattern (33 bp):
TCAAAATAAACTTAAATTTAAAATAATTTAAAC
Found at i:25883 original size:37 final size:37
Alignment explanation
Indices: 25842--25938 Score: 185
Period size: 37 Copynumber: 2.6 Consensus size: 37
25832 TTTCAATCCG
25842 CTTCTCAGTATCTCATCAGGAAGACGGATTTGGTCCA
1 CTTCTCAGTATCTCATCAGGAAGACGGATTTGGTCCA
25879 CTTCTCAGTATCTCATCAGGAAGACGGATTTGGTCCA
1 CTTCTCAGTATCTCATCAGGAAGACGGATTTGGTCCA
*
25916 CTTCTCAGTATCTCATCAAGAAG
1 CTTCTCAGTATCTCATCAGGAAG
25939 CTGACTATTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (37 bp):
CTTCTCAGTATCTCATCAGGAAGACGGATTTGGTCCA
Found at i:26146 original size:39 final size:39
Alignment explanation
Indices: 26091--26307 Score: 156
Period size: 39 Copynumber: 5.6 Consensus size: 39
26081 GATAACTGTA
*
26091 ATCTGCCCC-AGACTCGGGGTAGGAGATTGGTTGATGATG
1 ATCTGCCCCAAG-CTCGGGGTAAGAGATTGGTTGATGATG
* * *
26130 ATCTGCCTCAAGCTCGGGGTAAGAGTTTGGTTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGATG
* * * * * * ** *
26169 ATTTGCCCTAGGCTTGGGGTAAAAGATCGAATG--GCTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGATG
* * * * *
26206 CAATTTGCCTCAGGCTTGGGGTAAGAGATTGACTT-AT-AGTG
1 --ATCTGCCCCAAGCTCGGGGTAAGAGATTG-GTTGATGA-TG
* * *
26247 ATCTGCCCCAAGCTCGAGGTAAGAGTTTGGTTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGATG
*
26286 ATCTACCCCAAGCTCGGGGTAA
1 ATCTGCCCCAAGCTCGGGGTAA
26308 AATATCGAAT
Statistics
Matches: 137, Mismatches: 32, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
37 3 0.02
38 2 0.01
39 127 0.93
40 3 0.02
41 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (39 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGATG
Found at i:26315 original size:117 final size:117
Alignment explanation
Indices: 26128--26388 Score: 380
Period size: 117 Copynumber: 2.2 Consensus size: 117
26118 TGGTTGATGA
* * * * *
26128 TGATCTGCCTCAAGCTCGGGGTAAGAGTTTGGTTGATGGTGATTTGCCCTAGGCTTGGGGTAAAA
1 TGATCTGCCTCAAGCTCGGGGTAAGAGTTTGGTTGATGGTGATCTACCCCAAGCTCGGGGTAAAA
* **
26193 GATCGAATGGCTGCAAT-TTGCCTCAGGCTTGGGGTAAGAGATTGACTTATAG
66 GATCGAATGGCTGCAATCTT-CCCCAGGCTCAGGGTAAGAGATTGACTTATAG
* *
26245 TGATCTGCCCCAAGCTCGAGGTAAGAGTTTGGTTGATGGTGATCTACCCCAAGCTCGGGGTAAAA
1 TGATCTGCCTCAAGCTCGGGGTAAGAGTTTGGTTGATGGTGATCTACCCCAAGCTCGGGGTAAAA
* *
26310 TATCGAATGGCTGTAATCTTCCCCAGGCTCAGGGTAAGAGATTGACTTATAG
66 GATCGAATGGCTGCAATCTTCCCCAGGCTCAGGGTAAGAGATTGACTTATAG
* *
26362 TGATCTGCCTTAGGCTCGGGGTAAGAG
1 TGATCTGCCTCAAGCTCGGGGTAAGAG
26389 ATCATGGTTT
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
117 125 0.98
118 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (117 bp):
TGATCTGCCTCAAGCTCGGGGTAAGAGTTTGGTTGATGGTGATCTACCCCAAGCTCGGGGTAAAA
GATCGAATGGCTGCAATCTTCCCCAGGCTCAGGGTAAGAGATTGACTTATAG
Found at i:26890 original size:49 final size:49
Alignment explanation
Indices: 26631--27295 Score: 336
Period size: 49 Copynumber: 13.6 Consensus size: 49
26621 ACTAAATTCT
* * * *
26631 CCGTTACGGCTTAAATTTTTCCTTTCATG-CTTCTGAGGTATAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTATAAGGTTCG
* * * * *
26680 CCATTGCGACTTAAACCTTTCCC-T-GTGTCT-TCGTGGTACT--GGATTCA
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTA-TAAGG-TTCG
* *
26727 CCGTTACGACTTAAATCTTTCCCTTTCATGTTTCTGAGGTATAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCC-TTCATGTCTCTGAGGTATAAGGTTCG
* * * * * *
26777 CCATTGCGACTTAAACCTTTCCCTT-TTGTGTCTTCGTGGTACT--GGATTCC
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTC-T-GAGGTA-TAAGG-TTCG
*
26827 CCGTTACGACTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCG
* * * * *
26876 CCATTGCGACTTAAA-CTTTTCCCTT--TGTATCTTCGTGGTAT-TGGATTCA
1 CCGTTGCGACTTAAATC-TTTCCCTTCATGTCTC-T-GAGGTATAAGG-TTCG
* * *
26925 CCGTTGCGGCTTAAATCTTTTCCTTCATG-CTTCTGAGGTACAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTATAAGGTTCG
* * * * * * *
26974 TCGTTGTGACTTAAACCTTTCCCATT-ATATC-CTTATGGTACT-AGATTCA
1 CCGTTGCGACTTAAATCTTTCCC-TTCATGTCTCTGA-GGTA-TAAGGTTCG
* * * * * * * *
27023 ACATTGCGGCTTAAATATTTCCCTTCATATTTCTGAGGTACAAGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCG
* ** * * *
27072 TCGTTGCGACTTAAA-CTTTTCCCTTCAAATCTTTGTGGTAT-TGGATTCG
1 CCGTTGCGACTTAAATC-TTTCCCTTCATGTCTCTGAGGTATAAGG-TTCG
* ** * * * * *
27121 CTGTTGCGGTTTAAATCTTTCCCTTCATATTTTTGAGGTACAAGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCG
* * * *
27170 TCGTTGCGTCTTAAA-CTTTTCCCTTCCA-ATCT-TCGTGGTATCGAA--TTCG
1 CCGTTGCGACTTAAATC-TTTCCCTT-CATGTCTCT-GAGGTAT--AAGGTTCG
* * * *
27219 CCGTTGTGGCTTAAATCTTTCCCTTTATG-CTTCTGAGGTACAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTATAAGGTTCG
** *
27268 TTGTTGCGACTTAAACCTTTCCCTTCAT
1 CCGTTGCGACTTAAATCTTTCCCTTCAT
27296 ATTTTCGTGG
Statistics
Matches: 463, Mismatches: 105, Indels: 96
0.70 0.16 0.14
Matches are distributed among these distances:
46 3 0.01
47 38 0.08
48 23 0.05
49 303 0.65
50 81 0.17
51 15 0.03
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (49 bp):
CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCG
Found at i:26960 original size:98 final size:98
Alignment explanation
Indices: 26617--27338 Score: 754
Period size: 98 Copynumber: 7.4 Consensus size: 98
26607 TCAATCCGCA
** * * * * * *
26617 TGGTACTAAATTCTCCGTTACGGCTTAAATTTTTCCTTTCATGCTTCTGAGGTATAAGGTTCGCC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGTC
* * *
26682 ATTGCGACTTAAACCTTTCCC--TGTGTCTTCG
66 GTTGCGACTTAAACCTTTCCCTTTATATCTTCG
* * * * *
26713 TGGTACTGGATTCACCGTTACGACTTAAATCTTTCCCTTTCATGTTTCTGAGGTATAAGGTTCGC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCC-TTCATGCTTCTGAGGTACAAGGTTCGT
* * *
26778 CATTGCGACTTAAACCTTTCCCTTTTGTGTCTTCG
65 CGTTGCGACTTAAACCTTTCCC-TTTATATCTTCG
* * * * *
26813 TGGTACTGGATTCCCCGTTACGACTTAAATCTTTCCCTTCATG-TCTCTGAGGTATAAGGTTCGC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCT-TCTGAGGTACAAGGTTCGT
* * *
26877 CATTGCGACTTAAACTTTTCCCTTTGTATCTTCG
65 CGTTGCGACTTAAACCTTTCCCTTTATATCTTCG
* *
26911 TGGTATTGGATTCACCGTTGCGGCTTAAATCTTTTCCTTCATGCTTCTGAGGTACAAGGTTCGTC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGTC
* * *
26976 GTTGTGACTTAAACCTTTCCCATTATATCCTT-A
66 GTTGCGACTTAAACCTTTCCCTTTATAT-CTTCG
* * * * ** *
27009 TGGTACTAGATTCAACATTGCGGCTTAAATATTTCCCTTCATATTTCTGAGGTACAAGATTCGTC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGTC
* * * *
27074 GTTGCGACTTAAACTTTTCCCTTCAAATCTTTG
66 GTTGCGACTTAAACCTTTCCCTTTATATCTTCG
* * * * ** * *
27107 TGGTATTGGATTCGCTGTTGCGGTTTAAATCTTTCCCTTCATATTTTTGAGGTACAAGATTCGTC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGTC
* * *
27172 GTTGCGTCTTAAACTTTTCCCTTCCA-ATCTTCG
66 GTTGCGACTTAAACCTTTCCCTT-TATATCTTCG
* * * *
27205 TGGTA-TCGAATTCGCCGTTGTGGCTTAAATCTTTCCCTTTATGCTTCTGAGGTACAAGGTTCGT
1 TGGTACT-GGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGT
* * *
27269 TGTTGCGACTTAAACCTTTCCCTTCATATTTTCG
65 CGTTGCGACTTAAACCTTTCCCTTTATATCTTCG
* * * **
27303 TGGTACTAGATTCGCCATTGATGCTTAAATCTTTCC
1 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCC
27339 AATCTCATCT
Statistics
Matches: 547, Mismatches: 67, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
96 31 0.06
97 54 0.10
98 363 0.66
99 53 0.10
100 46 0.08
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (98 bp):
TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGTC
GTTGCGACTTAAACCTTTCCCTTTATATCTTCG
Found at i:27364 original size:147 final size:142
Alignment explanation
Indices: 26920--27375 Score: 352
Period size: 147 Copynumber: 3.1 Consensus size: 142
26910 GTGGTATTGG
* * * * *
26920 ATTCACCGTTGCGGCTTAAATCTTTTCCTTCATGCTTCTGAGGTACAAGGTTCGTCGTTGTGACT
1 ATTCGCCGTTGCGGCTTAAATCTTTCCCTTAATGCTTCTGAGGTACAAGGTTCGTTGTTGCGACT
* * * * *
26985 TAAACCTTTCCCATT-ATATCCTTATGGTACTAGATTCAACATTGCGGCTTAAATATTTCCCT-T
66 TAAACCTTTCCC-TTCATAT-TTTGTGGTACTAGATTCGACATTGC-GCTTAAATCTTTCCATCT
*
27048 CATATTTCTGAGGTACAA
128 CAT-CTTCTGA--TACAA
* * * ** *
27066 GATTCGTCGTTGCGACTTAAA-CTTTTCCCTTCAAAT-CTT-TGTGGTA-TTGGATTCGCTGTTG
1 -ATTCGCCGTTGCGGCTTAAATC-TTTCCCTT--AATGCTTCTGAGGTACAAGG-TTCGTTGTTG
** * * * * *
27127 CGGTTTAAATCTTTCCCTTCATATTTTTGAGGTACAAGATTCGTCGTTGCGTCTTAAA-CTTTTC
61 CGACTTAAACCTTTCCCTTCATA-TTTTGTGGTACTAGATTCGACATTGCG-CTTAAATC-TTTC
* * *
27191 CCT-TCCAATCTTCGTGGTATCGA
123 CATCT-C-ATCTTC-TGATA-CAA
* *
27214 ATTCGCCGTTGTGGCTTAAATCTTTCCCTTTATGCTTCTGAGGTACAAGGTTCGTTGTTGCGACT
1 ATTCGCCGTTGCGGCTTAAATCTTTCCCTTAATGCTTCTGAGGTACAAGGTTCGTTGTTGCGACT
* *
27279 TAAACCTTTCCCTTCATATTTTCGTGGTACTAGATTCGCCATTGATGCTTAAATCTTTCCAATCT
66 TAAACCTTTCCCTTCATATTTT-GTGGTACTAGATTCGACATTG-CGCTTAAATCTTTCC-ATCT
* *
27344 CATCTCCATGAAACCAA
128 CATCTTC-TGATA-CAA
27361 ATTCGCCGTTGCGGC
1 ATTCGCCGTTGCGGC
27376 CTCGACCTTT
Statistics
Matches: 239, Mismatches: 49, Indels: 42
0.72 0.15 0.13
Matches are distributed among these distances:
145 2 0.01
146 13 0.05
147 200 0.84
148 17 0.07
149 7 0.03
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (142 bp):
ATTCGCCGTTGCGGCTTAAATCTTTCCCTTAATGCTTCTGAGGTACAAGGTTCGTTGTTGCGACT
TAAACCTTTCCCTTCATATTTTGTGGTACTAGATTCGACATTGCGCTTAAATCTTTCCATCTCAT
CTTCTGATACAA
Found at i:28343 original size:8 final size:7
Alignment explanation
Indices: 28305--28393 Score: 58
Period size: 7 Copynumber: 12.9 Consensus size: 7
28295 CACCTTGACC
28305 TTTTCTT
1 TTTTCTT
* *
28312 TTTCCGT
1 TTTTCTT
28319 TTTTCTCT
1 TTTTCT-T
*
28327 ATTTCTT
1 TTTTCTT
*
28334 TTTCCTT
1 TTTTCTT
28341 TTTTC-T
1 TTTTCTT
*
28347 TTTCCTT
1 TTTTCTT
*
28354 TCTTCTT
1 TTTTCTT
28361 TTTT-TT
1 TTTTCTT
*
28367 TTTACTT
1 TTTTCTT
**
28374 CNCTTCTT
1 -TTTTCTT
28382 TTTT-TT
1 TTTTCTT
28388 TTTTCT
1 TTTTCT
28394 CTCTTTTTTT
Statistics
Matches: 59, Mismatches: 18, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
6 16 0.27
7 33 0.56
8 10 0.17
ACGTcount: A:0.02, C:0.20, G:0.01, T:0.75
Consensus pattern (7 bp):
TTTTCTT
Found at i:28345 original size:14 final size:14
Alignment explanation
Indices: 28328--28363 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
28318 TTTTTCTCTA
28328 TTTCTTTTTCCTTT
1 TTTCTTTTTCCTTT
28342 TTTC-TTTTCCTTT
1 TTTCTTTTTCCTTT
*
28355 CTTCTTTTT
1 TTTCTTTTT
28364 TTTTTTACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTCTTTTTCCTTT
Found at i:28379 original size:21 final size:20
Alignment explanation
Indices: 28338--28417 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 20
28328 TTTCTTTTTC
* *
28338 CTTTTTTCTTTTCCTTTCTT
1 CTTTTTTTTTTTACTTTCTT
*
28358 CTTTTTTTTTTTACTTCNCTT
1 CTTTTTTTTTTTACTT-TCTT
* *
28379 CTTTTTTTTTTTTCTCTCTT
1 CTTTTTTTTTTTACTTTCTT
*
28399 -TTTTTATTTATTTATTTTC
1 CTTTTT-TTT-TTTACTTTC
28418 ATTGTATCTG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
19 5 0.10
20 20 0.42
21 23 0.48
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.76
Consensus pattern (20 bp):
CTTTTTTTTTTTACTTTCTT
Found at i:33611 original size:29 final size:29
Alignment explanation
Indices: 33557--33836 Score: 164
Period size: 29 Copynumber: 9.6 Consensus size: 29
33547 GTAAAAAGAT
* * * *
33557 AATTTTTGGAAATTTCGAGGT-CAAATGG
1 AATTTTTGGAAGTTTAGGGGTAAAAATGG
*
33585 AATTTTTGTGAAGTTTAGGGGT-AAAATGT
1 AATTTTTG-GAAGTTTAGGGGTAAAAATGG
* * *
33614 AATTTTTAGAAATTT-GGGGTCAAAAATTG
1 AATTTTTGGAAGTTTAGGGGT-AAAAATGG
* * *
33643 AATTTTTGAAAAGTTTGGGGGTAAAAATGT
1 AATTTTTG-GAAGTTTAGGGGTAAAAATGG
* * *
33673 ATTTTTTGTAAAATTTA-GGGTCAAAAATGG
1 AATTTTTG-GAAGTTTAGGGGT-AAAAATGG
*
33703 AA-TTTTGGAAAGTTT-GAGGTCAAAAATGG
1 AATTTTTGG-AAGTTTAGGGGT-AAAAATGG
* *
33732 AA-TTTTGGAAAGTTTAGTGGTAAAAATGT
1 AATTTTTGG-AAGTTTAGGGGTAAAAATGG
* * *
33761 AATTTTTAGAAAGTTT-GAGGTCAAAAATAG
1 AATTTTT-GGAAGTTTAGGGGT-AAAAATGG
* ** *
33791 AA-TTTTGGAAAGTTTAGAGCCAAAAATGT
1 AATTTTTGG-AAGTTTAGGGGTAAAAATGG
* *
33820 AATTTTTGAAAGATTAG
1 AATTTTTGGAAGTTTAG
33837 AGGTCTTCTA
Statistics
Matches: 201, Mismatches: 36, Indels: 29
0.76 0.14 0.11
Matches are distributed among these distances:
27 5 0.02
28 15 0.07
29 113 0.56
30 62 0.31
31 6 0.03
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.36
Consensus pattern (29 bp):
AATTTTTGGAAGTTTAGGGGTAAAAATGG
Found at i:33648 original size:58 final size:58
Alignment explanation
Indices: 33545--33776 Score: 183
Period size: 58 Copynumber: 4.0 Consensus size: 58
33535 AGACATCTGA
* * * **
33545 GGGTAAAAAGATAATTTTTGGAAATTTCGAGGTC--AAATGGAATTTTTGTGAAGTTTAG
1 GGGTAAAATG-TAATTTTTAGAAATTT-GGGGTCAAAAATGGAATTTTTGAAAAGTTTAG
* *
33603 GGGTAAAATGTAATTTTTAGAAATTTGGGGTCAAAAATTGAATTTTTGAAAAGTTTGG
1 GGGTAAAATGTAATTTTTAGAAATTTGGGGTCAAAAATGGAATTTTTGAAAAGTTTAG
* * *
33661 GGGTAAAAATGT-ATTTTTTGTAAAATTTAGGGTCAAAAATGGAA-TTTTGGAAAGTTT-G
1 GGGT-AAAATGTAATTTTTAG--AAATTTGGGGTCAAAAATGGAATTTTTGAAAAGTTTAG
* * * * *
33719 AGGTCAAAAATGGAA-TTTTGGAAAGTTTAGTGGT-AAAAATGTAATTTTT-AGAAAGTTT
1 GGGT--AAAATGTAATTTTTAGAAA-TTT-GGGGTCAAAAATGGAATTTTTGA-AAAGTTT
33777 GAGGTCAAAA
Statistics
Matches: 145, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
56 5 0.03
57 18 0.12
58 56 0.39
59 45 0.31
60 21 0.14
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (58 bp):
GGGTAAAATGTAATTTTTAGAAATTTGGGGTCAAAAATGGAATTTTTGAAAAGTTTAG
Found at i:33715 original size:59 final size:59
Alignment explanation
Indices: 33579--33831 Score: 227
Period size: 59 Copynumber: 4.3 Consensus size: 59
33569 TTTCGAGGTC
* *
33579 AAATGGAATTTTTGTG-AAGTTTAGGGGT-AAAATGTAATTTT-TAGAAATTTGGGGTCAA
1 AAATGGAATTTTTG-GAAAGTTTGGGGGTAAAAATGTAATTTTGTA-AAATTTAGGGTCAA
* * *
33637 AAATTGAATTTTTGAAAAGTTTGGGGGTAAAAATGTATTTTTTGTAAAATTTAGGGTCAA
1 AAATGGAATTTTTGGAAAGTTTGGGGGTAAAAATGTA-ATTTTGTAAAATTTAGGGTCAA
* * * *
33697 AAATGGAA-TTTTGGAAAGTTT-GAGGTCAAAAATGGAATTTTGGAAAGTTTAGTGGT-AA
1 AAATGGAATTTTTGGAAAGTTTGGGGGT-AAAAATGTAATTTTGTAAAATTTAG-GGTCAA
* * * * * * *
33755 AAATGTAATTTTTAGAAAGTTT-GAGGTCAAAAATAG-AATTTTGGAAAGTTTAGAGCCAA
1 AAATGGAATTTTTGGAAAGTTTGGGGGT-AAAAAT-GTAATTTTGTAAAATTTAGGGTCAA
*
33814 AAATGTAATTTTT-GAAAG
1 AAATGGAATTTTTGGAAAG
33832 ATTAGAGGTC
Statistics
Matches: 170, Mismatches: 16, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
58 56 0.33
59 87 0.51
60 25 0.15
61 2 0.01
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.36
Consensus pattern (59 bp):
AAATGGAATTTTTGGAAAGTTTGGGGGTAAAAATGTAATTTTGTAAAATTTAGGGTCAA
Found at i:33744 original size:88 final size:88
Alignment explanation
Indices: 33607--33836 Score: 261
Period size: 88 Copynumber: 2.6 Consensus size: 88
33597 GTTTAGGGGT
* * * * * *
33607 AAAATGTAATTTTTAGAAA-TTTGGGGTCAAAAATTGAATTTTTGAAAAGTTTGGGGGTAAAAAT
1 AAAATGGAA-TTTTGGAAAGTTTGAGGTCAAAAATGGAA-TTTTGGAAAGTTTAGGGGTAAAAAT
*
33671 GT-ATTTTTTGTAAAATTT-AGGGTCA
64 GTAATTTTTAG-AAAATTTGA-GGTCA
*
33696 AAAATGGAATTTTGGAAAGTTTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGTGGTAAAAATGT
1 AAAATGGAATTTTGGAAAGTTTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAATGT
*
33761 AATTTTTAGAAAGTTTGAGGTCA
66 AATTTTTAGAAAATTTGAGGTCA
* * * * *
33784 AAAATAGAATTTTGGAAAGTTT-AGAGCCAAAAATGTAATTTTTGAAAGATTAG
1 AAAATGGAATTTTGGAAAGTTTGAG-GTCAAAAATGGAATTTTGGAAAGTTTAG
33837 AGGTCTTCTA
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
87 2 0.02
88 88 0.72
89 33 0.27
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.36
Consensus pattern (88 bp):
AAAATGGAATTTTGGAAAGTTTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAATGT
AATTTTTAGAAAATTTGAGGTCA
Found at i:35704 original size:17 final size:16
Alignment explanation
Indices: 35645--35728 Score: 60
Period size: 17 Copynumber: 5.0 Consensus size: 16
35635 CTTTTAAATT
* *
35645 TAAATTTTATTTTAAAA
1 TAAATTTAAATTT-AAA
**
35662 TAAATTTAAACTCCAAA
1 TAAATTTAAA-TTTAAA
**
35679 TAAGCTTAAATTTACAA
1 TAAATTTAAATTTA-AA
35696 TAAATTTAAACTTTAAA
1 TAAATTTAAA-TTTAAA
* *
35713 TGAATTAAAATTTAAA
1 TAAATTTAAATTTAAA
35729 ATCTAAAATT
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
16 8 0.15
17 39 0.75
18 5 0.10
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:35724 original size:34 final size:33
Alignment explanation
Indices: 35655--35730 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 33
35645 TAAATTTTAT
35655 TTTAAAATAAATTTAAACTCCAAATAAGCTTAAA
1 TTTAAAATAAATTTAAACTCCAAATAA-CTTAAA
* **
35689 TTTACAATAAATTTAAACTTTAAATGAA-TTAAAA
1 TTTAAAATAAATTTAAACTCCAAAT-AACTT-AAA
35723 TTTAAAAT
1 TTTAAAAT
35731 CTAAAATTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 2 0.06
34 32 0.89
35 2 0.06
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.37
Consensus pattern (33 bp):
TTTAAAATAAATTTAAACTCCAAATAACTTAAA
Found at i:41687 original size:3 final size:3
Alignment explanation
Indices: 41681--41706 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
41671 GGCAATAGTG
41681 CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CA
41707 AAGGCGGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:46379 original size:23 final size:25
Alignment explanation
Indices: 46353--46398 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46343 CCAATTAGGG
46353 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
46376 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
46399 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:51876 original size:23 final size:23
Alignment explanation
Indices: 51848--51925 Score: 129
Period size: 23 Copynumber: 3.3 Consensus size: 23
51838 ACGTCTCATT
*
51848 CTCTCTGTTATTAGCACTTTGTGTG
1 CTCTCTG--ATTAGCACTGTGTGTG
51873 CTCTCTGATTAGCACTGTGTGTG
1 CTCTCTGATTAGCACTGTGTGTG
51896 CTCTCTGATTAGCACTGTGTGTG
1 CTCTCTGATTAGCACTGTGTGTG
51919 CTCTCTG
1 CTCTCTG
51926 TTGCTCAGCA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
23 45 0.87
25 7 0.13
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (23 bp):
CTCTCTGATTAGCACTGTGTGTG
Found at i:51876 original size:25 final size:25
Alignment explanation
Indices: 51848--51953 Score: 125
Period size: 23 Copynumber: 4.4 Consensus size: 25
51838 ACGTCTCATT
*
51848 CTCTCTGTTATTAGCACTTTGTGTG
1 CTCTCTGTTATTAGCACTGTGTGTG
51873 CTCTCTG--ATTAGCACTGTGTGTG
1 CTCTCTGTTATTAGCACTGTGTGTG
51896 CTCTCTG--ATTAGCACTGTGTGTG
1 CTCTCTGTTATTAGCACTGTGTGTG
* *
51919 CTCTCTGTTGCTCAGCACT-TAG-GTG
1 CTCTCTGTT-ATTAGCACTGT-GTGTG
51944 CTCTCTGTTA
1 CTCTCTGTTA
51954 GTACTTTGGT
Statistics
Matches: 73, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
23 45 0.62
25 20 0.27
26 8 0.11
ACGTcount: A:0.12, C:0.24, G:0.23, T:0.42
Consensus pattern (25 bp):
CTCTCTGTTATTAGCACTGTGTGTG
Found at i:67929 original size:25 final size:25
Alignment explanation
Indices: 67913--67972 Score: 106
Period size: 23 Copynumber: 2.5 Consensus size: 25
67903 AGCACGTCTC
67913 GTGCTCTCTGTTATTAGCACTGTGT
1 GTGCTCTCTGTTATTAGCACTGTGT
67938 GTGCTCTCTG--ATTAGCACTGTGT
1 GTGCTCTCTGTTATTAGCACTGTGT
67961 GTGCTCTCTGTT
1 GTGCTCTCTGTT
67973 GCCCAGCACT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 23 0.70
25 10 0.30
ACGTcount: A:0.10, C:0.22, G:0.25, T:0.43
Consensus pattern (25 bp):
GTGCTCTCTGTTATTAGCACTGTGT
Found at i:67951 original size:23 final size:23
Alignment explanation
Indices: 67892--67970 Score: 99
Period size: 23 Copynumber: 3.3 Consensus size: 23
67882 ACACTAGCGC
*
67892 GCTCTCT-ATTTAGCAC-GTCTCGT
1 GCTCTCTGA-TTAGCACTGTGT-GT
67915 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG--ATTAGCACTGTGTGT
67940 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
67963 GCTCTCTG
1 GCTCTCTG
67971 TTGCCCAGCA
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
23 30 0.59
25 17 0.33
26 4 0.08
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.41
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:67965 original size:48 final size:48
Alignment explanation
Indices: 67892--68018 Score: 122
Period size: 48 Copynumber: 2.7 Consensus size: 48
67882 ACACTAGCGC
* **
67892 GCTCTCT-ATTTAGCAC-GTCTCGTGCTCTCTGTT-ATTAGCACTGT-GTGT
1 GCTCTCTGA-TTAGCACTGTGT-GTGCTCTCTGTTGACCAGCACT-TAG-GT
*
67940 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTGCCCAGCACTTAGGT
1 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTGACCAGCACTTAGGT
* *
67988 GCTCTCTG-TTAGTACTTTG-GTGCTCTCTGTT
1 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTT
68019 TGTTCCGTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
46 12 0.17
47 9 0.13
48 37 0.54
49 11 0.16
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.41
Consensus pattern (48 bp):
GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTGACCAGCACTTAGGT
Found at i:68959 original size:19 final size:20
Alignment explanation
Indices: 68937--68984 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
68927 AAAAAAATCG
*
68937 AAAAGAAAAATT-GAAAATA
1 AAAAGAAAAATTAGAAAAAA
68956 AAAAG-AAAATTGAGAAAAAA
1 AAAAGAAAAATT-AGAAAAAA
68976 AAAAGAAAA
1 AAAAGAAAA
68985 GAAAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 6 0.24
19 5 0.20
20 11 0.44
21 3 0.12
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.10
Consensus pattern (20 bp):
AAAAGAAAAATTAGAAAAAA
Found at i:68972 original size:20 final size:18
Alignment explanation
Indices: 68937--68992 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 18
68927 AAAAAAATCG
*
68937 AAAAGAAAAATTGAAAATA
1 AAAAG-AAAATTGAAAAAA
68956 AAAAGAAAATTGAGAAAAAA
1 AAAAGAAAATT--GAAAAAA
68976 AAAAGAAAA--GAAAAAA
1 AAAAGAAAATTGAAAAAA
68992 A
1 A
68993 TAGACAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
16 8 0.24
18 6 0.18
19 5 0.15
20 15 0.44
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (18 bp):
AAAAGAAAATTGAAAAAA
Found at i:70044 original size:23 final size:25
Alignment explanation
Indices: 70018--70063 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70008 CCAATTAGGG
70018 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
70041 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
70064 TAGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:72731 original size:15 final size:16
Alignment explanation
Indices: 72711--72742 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
72701 ATAAATTTAT
72711 AAAAAATTAAA-TTAA
1 AAAAAATTAAACTTAA
72726 AAAAAATTAAACTTAA
1 AAAAAATTAAACTTAA
72742 A
1 A
72743 GAGCCATGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAAAATTAAACTTAA
Found at i:79438 original size:26 final size:26
Alignment explanation
Indices: 79408--79460 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
79398 TAAGTTATCC
79408 ATTATATTTACATGATGTACTTATAT
1 ATTATATTTACATGATGTACTTATAT
79434 ATTATATTTACATGATGTACTTATAT
1 ATTATATTTACATGATGTACTTATAT
79460 A
1 A
79461 GTTTTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (26 bp):
ATTATATTTACATGATGTACTTATAT
Found at i:82500 original size:37 final size:37
Alignment explanation
Indices: 82450--82525 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
82440 AACATTTATG
82450 TTTTATAAAAATTGCATCTCGATTGGAATAATAAACA
1 TTTTATAAAAATTGCATCTCGATTGGAATAATAAACA
82487 TTTTATAAAAATTGCATCTCGATTGGAATAATAAACA
1 TTTTATAAAAATTGCATCTCGATTGGAATAATAAACA
82524 TT
1 TT
82526 CTCTTTCAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (37 bp):
TTTTATAAAAATTGCATCTCGATTGGAATAATAAACA
Found at i:93953 original size:21 final size:22
Alignment explanation
Indices: 93917--93959 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
93907 CGGTAAATAA
*
93917 TTTTAAAATTATTAAAATTATT
1 TTTTAAAATTAATAAAATTATT
93939 TTTTAAAA-TAATAAAATTATT
1 TTTTAAAATTAATAAAATTATT
93960 AAATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTAAAATTAATAAAATTATT
Found at i:94925 original size:21 final size:22
Alignment explanation
Indices: 94901--94943 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
94891 AAAATTATTT
*
94901 AATAATTTT-ATTATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
94922 AATAATTTTAATAATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
94944 TCTTTTGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATAATTTTAATAATTTTAAAA
Found at i:105323 original size:261 final size:261
Alignment explanation
Indices: 104646--105432 Score: 1468
Period size: 261 Copynumber: 3.0 Consensus size: 261
104636 ACCTGGACTA
104646 ACAGATCATGGTTGCAATTGAAATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAACAAA
1 ACAGATCATGGTTGCAATTGAAATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAACAAA
* * *
104711 CTAAGTGTTCATTAGAAGGTTGCATTTTCCAATCATGTAGTGAATCTTATCAATGAAACTTAATT
66 CTAAGTGTTCATTAAAAGGTTGCATTTTTCAATCATGTAGTGAATCTTATCAATGAAACTTAACT
104776 TGTTAGGCAAAGTATTATTAGAGTGCCCTTTTTTCTCATATACATTAGCAAAATAATTCTTCAGT
131 TGTTAGGCAAAGTATTATTAGAGTGCCCTTTTTTCTCATATACATTAGCAAAATAATTCTTCAGT
*
104841 CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGAGGCAAGTTG
196 CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGGGGCAAGTTG
104906 T
261 T
104907 ACAGATCATGGTTGCAATTG-AATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAACAAA
1 ACAGATCATGGTTGCAATTGAAATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAACAAA
104971 CTAAGTGTTCATTAAAAGGTTGCATTTTTCAATCATGTAGTGAATCTTATCAATGAAACTTAACT
66 CTAAGTGTTCATTAAAAGGTTGCATTTTTCAATCATGTAGTGAATCTTATCAATGAAACTTAACT
* ** * *
105036 TGTTAGGTAACTTATTATTAGAGTGCCGTTTTTTCTCATATACATTAGCAAAATAATTCTTCTGT
131 TGTTAGGCAAAGTATTATTAGAGTGCCCTTTTTTCTCATATACATTAGCAAAATAATTCTTCAGT
105101 CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGGGGCAAGTTG
196 CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGGGGCAAGTTG
105166 T
261 T
*
105167 ACAGATCATGGTTGCAATTGAAATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAATAAA
1 ACAGATCATGGTTGCAATTGAAATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAACAAA
105232 CTAAGTGTTCATTAAAAGGTTGCATTTTTCAATCATGTAGTGAATCTTATCAATGAAACTTAACT
66 CTAAGTGTTCATTAAAAGGTTGCATTTTTCAATCATGTAGTGAATCTTATCAATGAAACTTAACT
*
105297 TGTTAGGCAAAGTATTATTTGAGTGCCCTTTTTTCTCATATACATTAGCAAAATAATTCTTCAGT
131 TGTTAGGCAAAGTATTATTAGAGTGCCCTTTTTTCTCATATACATTAGCAAAATAATTCTTCAGT
105362 CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGGGGCAAGTTG
196 CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGGGGCAAGTTG
105427 T
261 T
105428 ACAGA
1 ACAGA
105433 GGAGGAACTA
Statistics
Matches: 509, Mismatches: 16, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
260 251 0.49
261 258 0.51
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (261 bp):
ACAGATCATGGTTGCAATTGAAATAATTTGAGCCTGTTAATAAATAAACCTTGAAGAGAAACAAA
CTAAGTGTTCATTAAAAGGTTGCATTTTTCAATCATGTAGTGAATCTTATCAATGAAACTTAACT
TGTTAGGCAAAGTATTATTAGAGTGCCCTTTTTTCTCATATACATTAGCAAAATAATTCTTCAGT
CTCTCACTTTTGCAGAGTGCTAGCCCATGTCCGACACTTTTTGTGGCTAATCTAGGGGCAAGTTG
T
Found at i:109123 original size:18 final size:17
Alignment explanation
Indices: 109100--109155 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
109090 TTACATCTGT
109100 GAGCTCATTCAAAGTTGC
1 GAGCTCA-TCAAAGTTGC
* ***
109118 GAGCTCACTCAAGGACAC
1 GAGCTCA-TCAAAGTTGC
109136 GAGCTCATCAAAGTTGC
1 GAGCTCATCAAAGTTGC
109153 GAG
1 GAG
109156 TTTTACATGT
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
17 9 0.31
18 20 0.69
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (17 bp):
GAGCTCATCAAAGTTGC
Found at i:110303 original size:2 final size:2
Alignment explanation
Indices: 110296--110320 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
110286 AGGATATGCT
110296 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
110321 TGAATGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:110659 original size:60 final size:59
Alignment explanation
Indices: 110592--110748 Score: 215
Period size: 60 Copynumber: 2.6 Consensus size: 59
110582 TTAATATAAC
* * *
110592 ATTTGGTATCTGAACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTTTGATCCA
1 ATTTGGTA-CTGAACTTGACATTTTTTCCTAATTTGACACCTAAACTTTTTTTGGACCCA
* * *
110652 ATTTGGTACTTAAACTTGACACTTTTTCTTAATTTGACACCTAAACTTTTTTTGGACCCA
1 ATTTGGTAC-TGAACTTGACATTTTTTCCTAATTTGACACCTAAACTTTTTTTGGACCCA
*
110712 ATTTAGTACCTGAACTTGACATTTTTTTCCTAATTTG
1 ATTTGGTA-CTGAACTTGACA-TTTTTTCCTAATTTG
110749 GTATCTAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
59 1 0.01
60 69 0.82
61 14 0.17
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.46
Consensus pattern (59 bp):
ATTTGGTACTGAACTTGACATTTTTTCCTAATTTGACACCTAAACTTTTTTTGGACCCA
Found at i:110986 original size:59 final size:60
Alignment explanation
Indices: 110914--111059 Score: 152
Period size: 59 Copynumber: 2.4 Consensus size: 60
110904 GATTAGGTAT
* * * *
110914 CAAATTAAGAAAAAGAGTCAAGTTT-AGGTACCAAATCGAATCCC-AAAATGTTTAAGTAC
1 CAAATTAAAAAAAAGAGTCAAGTTTGA-GTACCAAATCGAACCCCAAAAAAGTCTAAGTAC
* * * * *
110973 CAACTTAAAAAAAAGTGTCAAGTTTGAGTACCAGATTGGACCCCAAAAAAAGTCTAAGTAC
1 CAAATTAAAAAAAAGAGTCAAGTTTGAGTACCAAATCGAACCCC-AAAAAAGTCTAAGTAC
*
111034 CAAATTAAGAAAAAAAATGTCAAGTT
1 CAAATTAA-AAAAAAGA-GTCAAGTT
111060 CAAGTACTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
59 35 0.50
60 1 0.01
61 20 0.29
62 6 0.09
63 8 0.11
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.23
Consensus pattern (60 bp):
CAAATTAAAAAAAAGAGTCAAGTTTGAGTACCAAATCGAACCCCAAAAAAGTCTAAGTAC
Found at i:114906 original size:16 final size:17
Alignment explanation
Indices: 114887--114926 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
114877 ATTACATTAT
114887 ATAAAAATTAAA-TAAA
1 ATAAAAATTAAATTAAA
114903 ATAAAAATTAAATTAAA
1 ATAAAAATTAAATTAAA
*
114920 TTAAAAA
1 ATAAAAA
114927 CAAATAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
ATAAAAATTAAATTAAA
Found at i:116471 original size:87 final size:87
Alignment explanation
Indices: 116321--116486 Score: 264
Period size: 86 Copynumber: 1.9 Consensus size: 87
116311 CCATGCTTTT
*
116321 TTGAGAAAAAAAAATTCAAAATTTTTTTATGTTAGCCATCAATGGTCGACACCACCTGTTCTCGA
1 TTGAGAAAAAAAAATTCAAAATTTTTTGATGTTAGCCATCAATGGTCGACACCACCTGTTCTCGA
*
116386 A-AAAAAATTTGCATTTTTAGG
66 ATAAAAAAATTGCATTTTTAGG
* *
116407 TTGAGAAAAAAAAATTTAAAATTTTTTGGTGTTAGCCATGCAATGGTCGACACTC-CCTGTTCTC
1 TTGAGAAAAAAAAATTCAAAATTTTTTGATGTTAGCCAT-CAATGGTCGACAC-CACCTGTTCTC
116471 GAATAAAAAAATTGCA
64 GAATAAAAAAATTGCA
116487 AATTTTTTTG
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
86 36 0.49
87 25 0.34
88 12 0.16
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (87 bp):
TTGAGAAAAAAAAATTCAAAATTTTTTGATGTTAGCCATCAATGGTCGACACCACCTGTTCTCGA
ATAAAAAAATTGCATTTTTAGG
Found at i:116514 original size:62 final size:60
Alignment explanation
Indices: 116414--116607 Score: 232
Period size: 61 Copynumber: 3.2 Consensus size: 60
116404 AGGTTGAGAA
* * *
116414 AAAAAAATT-TAAAATTTTTTGGTGTTAGCCATGCAATGGTCGACACTCCCTGTTCTCGAAT
1 AAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCAATGG-CGACAC-CCCTGTTCTCGAAT
* * * * *
116475 AAAAAAATTGCAAATTTTTTTGGTGTGGGCCATGTAATGGCTGACACCCCTTTTCTTGGAT
1 AAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCAATGGC-GACACCCCTGTTCTCGAAT
* *
116536 AAAAAAATTACAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTGTTCTC-CA-
1 AAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCAATGG-CGACA-CCCCTGTTCTCGAAT
116596 AAAAAAATTGCA
1 AAAAAAATTGCA
116608 TTTTTGGGTG
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
60 11 0.10
61 63 0.55
62 40 0.35
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (60 bp):
AAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCAATGGCGACACCCCTGTTCTCGAAT
Found at i:116719 original size:44 final size:42
Alignment explanation
Indices: 116625--116751 Score: 128
Period size: 44 Copynumber: 2.9 Consensus size: 42
116615 GTGTTAGTCA
** * *
116625 TTGCATGATCGACATCCCCTTTTTGAGAAAAAAAATTTAAATTTTTT
1 TTGCATGGCCGACACCCCCTTTTTGA-AAAAAAAA-TTACA---TTT
*
116672 TTGCATGGCCGACACCCTCTTTTCTCGAAAAAAAAATTACATTT
1 TTGCATGGCCGACACCCCCTTTT-T-GAAAAAAAAATTACATTT
* *
116716 TTGCATGGTCGACACCCCCTTTTTGAGAAAAAAATT
1 TTGCATGGCCGACACCCCCTTTTTGAAAAAAAAATT
116752 TTCAAATTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
42 11 0.16
43 1 0.01
44 24 0.34
47 23 0.33
48 9 0.13
49 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (42 bp):
TTGCATGGCCGACACCCCCTTTTTGAAAAAAAAATTACATTT
Found at i:116839 original size:61 final size:60
Alignment explanation
Indices: 116720--116914 Score: 250
Period size: 61 Copynumber: 3.2 Consensus size: 60
116710 ACATTTTTGC
* * *
116720 ATGGTCGACACCCCCTTTTTGAGA-AAAAAATTTTCAAATTTTTTTTGTGTTGGCCATGCA
1 ATGGTCGACACCCCCTTTTTG-GATAAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCA
*
116780 ATGGTCGACACCCCCTATTCTCGGATAAAAAAATTGCAAATTTTTTTGGTG-TGGCCATGCA
1 ATGGTCGACACCCCCT-TT-TTGGATAAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCA
* * * *
116841 ATGGTCGACACCCTCTTTTATTGGATAAAAAAATTGCAAATTTTGTTGGTGTTGGTCATGTA
1 ATGGTCGACACCC-CCTTT-TTGGATAAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCA
*
116903 ATGGCCGACACC
1 ATGGTCGACACC
116915 AACTTTCCCT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
60 16 0.13
61 58 0.49
62 45 0.38
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (60 bp):
ATGGTCGACACCCCCTTTTTGGATAAAAAAATTGCAAATTTTTTTGGTGTTGGCCATGCA
Found at i:117764 original size:30 final size:30
Alignment explanation
Indices: 117712--117781 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
117702 AAATAATAAT
* * *
117712 AATTAGAATATACAGGAGATTAGAAAGAAA
1 AATTAAAATATACAAGAAATTAGAAAGAAA
* **
117742 AATTAAAATATACAATAAATTAGAAATTAA
1 AATTAAAATATACAAGAAATTAGAAAGAAA
*
117772 ATTTAAAATA
1 AATTAAAATA
117782 AAAACAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (30 bp):
AATTAAAATATACAAGAAATTAGAAAGAAA
Found at i:120282 original size:86 final size:86
Alignment explanation
Indices: 120178--120644 Score: 689
Period size: 86 Copynumber: 5.5 Consensus size: 86
120168 TTAAAATATA
*
120178 ATAAAAATTATAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
* *
120243 GTCAAATCAGCATATTATTTG
66 GTCAAATCAACACATTATTTG
120264 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
120329 GTCAAATCAACACATTATTTG
66 GTCAAATCAACACATTATTTG
120350 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
120415 GTCAAATCAACACATTATTTG
66 GTCAAATCAACACATTATTTG
* * *
120436 ATAAAAATTGT-A-AT-ATAATAATAATTTGTACTTTAAATATGA-AAATTTGATAAATAATGTA
1 ATAAAAATTGTAATATAATAATAATAATTTTTA-TTTAAATAT-ATAAAATTAATAAATAATGTA
*
120497 TTGTCAAATTAACACATTATTTG
64 TTGTCAAATCAACACATTATTTG
* * *
120520 ATAAAAATTGT-A-AT-ATAATAATAATTTGTACTTTAAATATGA-AAATTTGATAAATAATGTA
1 ATAAAAATTGTAATATAATAATAATAATTTTTA-TTTAAATAT-ATAAAATTAATAAATAATGTA
* *
120581 TTGTCAAATTAACACAATATTTG
64 TTGTCAAATCAACACATTATTTG
* * ***
120604 ATATAAATTGTAATATAATGATAACCTTTTTTATTTAAATA
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATA
120645 ATGTTAAATT
Statistics
Matches: 362, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
83 15 0.04
84 143 0.40
85 3 0.01
86 190 0.52
87 11 0.03
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.41
Consensus pattern (86 bp):
ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATATAAAATTAATAAATAATGTATT
GTCAAATCAACACATTATTTG
Found at i:120775 original size:12 final size:12
Alignment explanation
Indices: 120758--120805 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 12
120748 AAACATGTTC
120758 ATTAATTTCCAA
1 ATTAATTTCCAA
120770 ATTAATTTCAACTTAA
1 ATTAATTTC--C--AA
*
120786 ATTAATTTTCAA
1 ATTAATTTCCAA
120798 ATTAATTT
1 ATTAATTT
120806 TTACACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 19 0.61
14 2 0.06
16 10 0.32
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTAATTTCCAA
Found at i:120804 original size:16 final size:16
Alignment explanation
Indices: 120768--120802 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
120758 ATTAATTTCC
*
120768 AAATTAATTTCAACTT
1 AAATTAATTTCAAATT
120784 AAATTAATTTTCAAATT
1 AAATTAA-TTTCAAATT
120801 AA
1 AA
120803 TTTTTACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATTAATTTCAAATT
Found at i:120815 original size:28 final size:28
Alignment explanation
Indices: 120758--120815 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
120748 AAACATGTTC
**
120758 ATTAATTTCCAAATTAATTTCAACTTAA
1 ATTAATTTCCAAATTAATTTCAACACAA
* **
120786 ATTAATTTTCAAATTAATTTTTACACAA
1 ATTAATTTCCAAATTAATTTCAACACAA
120814 AT
1 AT
120816 ATTTTTCGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (28 bp):
ATTAATTTCCAAATTAATTTCAACACAA
Found at i:124043 original size:481 final size:482
Alignment explanation
Indices: 123080--125212 Score: 3869
Period size: 481 Copynumber: 4.4 Consensus size: 482
123070 GAAATTATAG
* * * *
123080 ACGATGACACGTGTTTTGCATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGGAGTGGACC
1 ACGACGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGTGGACC
123145 CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
66 CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
* *
123210 ATTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCGTGG
131 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
123275 ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCT
196 ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCT
*
123340 CCATTTCGAAGAACTTTATCGAATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGA
261 CCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGA
*
123405 TTCCTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTT
326 TTCCCGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTT
123470 GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAA
391 GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAA
123535 TTTTTCCATCAAAATGAACATAAACAA
456 TTTTTCCATCAAAATGAACATAAACAA
**
123562 ACGACGATGCGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGT-GACC
1 ACGACGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGTGGACC
* *
123626 CTCCATAACCCAATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGTTGGCTT
66 CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
123691 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
131 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
123756 ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCT
196 ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCT
*
123821 CCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGG
261 CCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGA
* * * *
123886 TTCCCGCAACGAGTAGCTATCTTTATACTGATTTTTCATTTTAATTCATCCAACGAAACACGCTT
326 TTCCCGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTT
*
123951 GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTAATGATAA
391 GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAA
124016 TTTTTCCATCAAAATGAACATAAACAA
456 TTTTTCCATCAAAATGAACATAAACAA
* * *
124043 ACAATGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTT-TTGAAGTGGAC
1 ACGACGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAG-AGTGGAC
* *
124107 CCTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATTAATATCAATTCTAGAACGCTGGCT
65 CCTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCT
124172 TACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATG
130 TACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATG
*
124237 GATTTTCGATATCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGC
195 GATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGC
**
124302 TCCATTTCGAAGAACTTTATCATATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTG
260 TCCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTG
* * **
124367 GTTTCCGCAACGAGTAGCTATCTTTGTACTGATTTTTTGTTTCAATTCATCCAACGAAACACGCT
325 ATTCCCGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCT
*
124432 TGTTCAGTCTCA-TCCGATTTTTTCTCTGCTTTTAAATACACAACCTTCATCGTCTGTATTGATA
390 TGTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATA
*
124496 ATTTTCCCATCAAAATGAACATAAACAA
455 ATTTTTCCATCAAAATGAACATAAACAA
* *
124524 ACGATGACACGAGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGTGGACC
1 ACGACGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGTGGACC
124589 CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
66 CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
124654 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
131 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
*
124719 ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGGTCATTATTATCAACAAGCT
196 ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCT
124784 CCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGA
261 CCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGA
*
124849 TTCCTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTT
326 TTCCCGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTT
124914 GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAA
391 GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAA
124979 TTTTTCCATCAAAATGAACATAAACAA
456 TTTTTCCATCAAAATGAACATAAACAA
**
125006 ACGACGATGCGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGT-GACC
1 ACGACGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGTGGACC
* *
125070 CTCCATAACCCAATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGTTGGCTT
66 CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
125135 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
131 ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
125200 ATTTTCGATCTCA
196 ATTTTCGATCTCA
Statistics
Matches: 1587, Mismatches: 60, Indels: 9
0.96 0.04 0.01
Matches are distributed among these distances:
480 2 0.00
481 1067 0.67
482 518 0.33
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (482 bp):
ACGACGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCTAGAGTGGACC
CTCCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTT
ACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGG
ATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCT
CCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGA
TTCCCGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTT
GTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAA
TTTTTCCATCAAAATGAACATAAACAA
Found at i:124882 original size:963 final size:963
Alignment explanation
Indices: 123083--125208 Score: 3884
Period size: 963 Copynumber: 2.2 Consensus size: 963
123073 ATTATAGACG
* *
123083 ATGACACGTGTTTTGCATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGGAGTGGACCCTC
1 ATGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGAAGTGGACCCTC
*
123148 CATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTTATT
66 CATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTTACT
*
123213 GGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCGTGGATT
131 GGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGGATT
*
123278 TTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCTCCA
196 TTCGATATCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCTCCA
123343 TTTCGAAGAACTTTATCGAATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGATTC
261 TTTCGAAGAACTTTATCGAATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGATTC
123408 CTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTTGTT
326 CTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTTGTT
123473 CAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAATTT
391 CAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAATTT
* ** *
123538 TTCCATCAAAATGAACATAAACAAACGACGATGCGTGTTTTGGATGTTATACGAACATCCACCGG
456 TCCCATCAAAATGAACATAAACAAACGACGACACGAGTTTTGGATGTTATACGAACATCCACCGG
123603 TGTTTGGATTTTCTAGAGTGACCCTCCATAACCCAATTGATCTTCCCAGCATACATTAAGATCAA
521 TGTTTGGATTTTCTAGAGTGACCCTCCATAACCCAATTGATCTTCCCAGCATACATTAAGATCAA
*
123668 TATCAATTCCAGAACGTTGGCTTACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCC
586 TATCAATTCCAGAACGCTGGCTTACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCC
123733 GCGAACAACTCAATGGGGCATGGATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCC
651 GCGAACAACTCAATGGGGCATGGATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCC
123798 TAGATCATTATTATCAACAAGCTCCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATT
716 TAGATCATTATTATCAACAAGCTCCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATT
* * *
123863 TGTAAAACAGTCTCAACATTTGGTTCCCGCAACGAGTAGCTATCTTTATACTGATTTTTCATTTT
781 TGTAAAACAGTCTCAACATTTGATTCCCGCAACGAGTAGCTATCTTTATACTGATTTTCCATTTC
123928 AATTCATCCAACGAAACACGCTTGTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACA
846 AATTCATCCAACGAAACACGCTTGTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACA
123993 ACCTTCATCGTCTGTAATGATAATTTTTCCATCAAAATGAACATAAACAAACA
911 ACCTTCATCGTCTGTAATGATAATTTTTCCATCAAAATGAACATAAACAAACA
124046 ATGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGAAGTGGACCCTC
1 ATGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGAAGTGGACCCTC
* *
124111 CATAACCCGATTGATCTTCCCAGCATACATTAAGATTAATATCAATTCTAGAACGCTGGCTTACT
66 CATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTTACT
124176 GGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGGATT
131 GGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGGATT
124241 TTCGATATCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCTCCA
196 TTCGATATCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCTCCA
*
124306 TTTCGAAGAACTTTATC-ATATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGGTT
261 TTTCGAAGAACTTTATCGA-ATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTT-GAT
**
124370 TCC-GCAACGAGTAGCTATCTTTGTACTGATTTTTTGTTTCAATTCATCCAACGAAACACGCTTG
324 TCCTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTTG
*
124434 TTCAGTCTCA-TCCGATTTTTTCTCTGCTTTTAAATACACAACCTTCATCGTCTGTATTGATAAT
389 TTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAAT
*
124498 TTTCCCATCAAAATGAACATAAACAAACGATGACACGAGTTTTGGATGTTATACGAACATCCACC
454 TTTCCCATCAAAATGAACATAAACAAACGACGACACGAGTTTTGGATGTTATACGAACATCCACC
*
124563 GGTGTTTGGATTTTCTAGAGTGGACCCTCCATAACCCGATTGATCTTCCCAGCATACATTAAGAT
519 GGTGTTTGGATTTTCTAGAGT-GACCCTCCATAACCCAATTGATCTTCCCAGCATACATTAAGAT
124628 CAATATCAATTCCAGAACGCTGGCTTACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATC
583 CAATATCAATTCCAGAACGCTGGCTTACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATC
124693 TCCGCGAACAACTCAATGGGGCATGGATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGT
648 TCCGCGAACAACTCAATGGGGCATGGATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGT
*
124758 CCCTAGGTCATTATTATCAACAAGCTCCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAA
713 CCCTAGATCATTATTATCAACAAGCTCCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAA
* * *
124823 ATTTGTAAAACAGTCTCAACATTTGATTCCTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGT
778 ATTTGTAAAACAGTCTCAACATTTGATTCCCGCAACGAGTAGCTATCTTTATACTGATTTTCCAT
124888 TTCAATTCATCCAACGAAACACGCTTGTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATAC
843 TTCAATTCATCCAACGAAACACGCTTGTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATAC
* *
124953 ACAACCTTCATCGTCTGTATTGATAATTTTTCCATCAAAATGAACATAAACAAACG
908 ACAACCTTCATCGTCTGTAATGATAATTTTTCCATCAAAATGAACATAAACAAACA
* ** *
125009 ACGATGCGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTCT-AGAGT-GACCCT
1 ATGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGA-AGTGGACCCT
* *
125072 CCATAACCCAATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGTTGGCTTAC
65 CCATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTTAC
125137 TGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGGAT
130 TGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGGAT
125202 TTTCGAT
195 TTTCGAT
125209 CTCA
Statistics
Matches: 1124, Mismatches: 35, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
962 275 0.24
963 844 0.75
964 5 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (963 bp):
ATGACACGTGTTTTGGATGTTATACGAACATCCACCGGTGTTTGGATTTTTTGAAGTGGACCCTC
CATAACCCGATTGATCTTCCCAGCATACATTAAGATCAATATCAATTCCAGAACGCTGGCTTACT
GGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCCGCGAACAACTCAATGGGGCATGGATT
TTCGATATCAGATGGGCAATAAATTTCAATCATTGTCCCTAGATCATTATTATCAACAAGCTCCA
TTTCGAAGAACTTTATCGAATCTGATGAAATCGAAAATTTGTAAAACAGTCTCAACATTTGATTC
CTGCAACGAGTAGCTATCTTTGTACTGATTTTCCGTTTCAATTCATCCAACGAAACACGCTTGTT
CAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACAACCTTCATCGTCTGTATTGATAATTT
TCCCATCAAAATGAACATAAACAAACGACGACACGAGTTTTGGATGTTATACGAACATCCACCGG
TGTTTGGATTTTCTAGAGTGACCCTCCATAACCCAATTGATCTTCCCAGCATACATTAAGATCAA
TATCAATTCCAGAACGCTGGCTTACTGGATTTAAGACTTGAATTGGTTCGGGGTGTGATATCTCC
GCGAACAACTCAATGGGGCATGGATTTTCGATCTCAGATGGGCAATAAATTTCAATCATTGTCCC
TAGATCATTATTATCAACAAGCTCCATTTCGAAGAACTTTATCGGATCTGATGAAATCGAAAATT
TGTAAAACAGTCTCAACATTTGATTCCCGCAACGAGTAGCTATCTTTATACTGATTTTCCATTTC
AATTCATCCAACGAAACACGCTTGTTCAGTCTCATTCCGATTTTTTCTCTGCTTTCAAATACACA
ACCTTCATCGTCTGTAATGATAATTTTTCCATCAAAATGAACATAAACAAACA
Done.