Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009938.1 Kokia drynarioides strain JFW-HI SEQ_124680, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6390
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3617 original size:35 final size:36

Alignment explanation


    Indices: 3568--3641  Score: 105
    Period size: 35  Copynumber: 2.1  Consensus size: 36

       3558 ACATTCGTAT

                     *                    *     
       3568 CTCAAACGATCTCTTCAAGTTTCCCAGT-ATTTCAG
          1 CTCAAACGAGCTCTTCAAGTTTCCCAGTAAATTCAG

                *                   *           
       3603 CTCATACGAGCTCTTCAAGTTTCCTAGTAAATTCAG
          1 CTCAAACGAGCTCTTCAAGTTTCCCAGTAAATTCAG

               
       3639 CTC
          1 CTC

       3642 TTCAAGTCTC


Statistics
Matches: 34,  Mismatches: 4, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  35   25  0.74
  36    9  0.26

ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34


Consensus pattern (36 bp):   
CTCAAACGAGCTCTTCAAGTTTCCCAGTAAATTCAG

Found at i:3744 original size:19 final size:19

Alignment explanation


    Indices: 3688--3744  Score: 69
    Period size: 19  Copynumber: 3.0  Consensus size: 19

       3678 TAGTCAATAG

                           *   
       3688 ATCGCTCTTACGAGCCAGT
          1 ATCGCTCTTACGAGCTAGT

              **       *  *    
       3707 ATTACTCTTACAAGATAGT
          1 ATCGCTCTTACGAGCTAGT

                               
       3726 ATCGCTCTTACGAGCTAGT
          1 ATCGCTCTTACGAGCTAGT

       3745 TTAGTATATC


Statistics
Matches: 29,  Mismatches: 9, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  19   29  1.00

ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32


Consensus pattern (19 bp):   
ATCGCTCTTACGAGCTAGT
Done.