Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009947.1 Kokia drynarioides strain JFW-HI SEQ_124691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2580
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.35


Found at i:1459 original size:10 final size:10

Alignment explanation


    Indices: 1444--1470  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

       1434 GATGGTTATG

                      
       1444 GAAATTCCTT
          1 GAAATTCCTT

                      
       1454 GAAATTCCTT
          1 GAAATTCCTT

                   
       1464 GAAATTC
          1 GAAATTC

       1471 TAGGTAAAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37


Consensus pattern (10 bp):   
GAAATTCCTT
Done.