Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000995.1 Kokia drynarioides strain JFW-HI SEQ_112193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6522
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37

Warning! 13 characters in sequence are not A, C, G, or T


Found at i:1407 original size:15 final size:16

Alignment explanation


    Indices: 1367--1409  Score: 52
    Period size: 15  Copynumber: 2.8  Consensus size: 16

       1357 CCTGTAAAAA

                        *   
       1367 TATAAAAATATCCATT
          1 TATAAAAATATCAATT

                 *          
       1383 TATAATAATA-CAATT
          1 TATAAAAATATCAATT

             *          
       1398 TTTAAAAATATC
          1 TATAAAAATATC

       1410 TTTATATTAT


Statistics
Matches: 22,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  15   12  0.55
  16   10  0.45

ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40


Consensus pattern (16 bp):   
TATAAAAATATCAATT
Done.