genome.fa.s9952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009952.1 Kokia drynarioides strain JFW-HI SEQ_124697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220972

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194--1296	49	2.1	48	82	5	118	36	23	29	10	1.88
1908--2035	39	3.3	39	75	4	132	26	35	16	21	1.95
1864--2035	78	2.2	78	85	2	220	26	33	18	22	1.96
2121--2722	206	2.9	206	91	0	981	34	18	23	24	1.96
2608--2808	86	2.3	86	88	1	296	35	17	23	23	1.95
2398--3012	292	2.1	292	86	1	847	34	19	23	23	1.96
3346--3438	17	5.3	18	81	10	113	40	2	3	53	1.29
3346--3438	35	2.7	34	85	6	116	40	2	3	53	1.29
3378--3438	6	10.5	6	72	13	56	44	3	1	50	1.28
3378--3424	23	2.0	23	87	0	67	44	2	2	51	1.25
3379--3437	11	5.2	11	76	13	57	42	3	1	52	1.28
3640--3680	20	2.1	20	86	4	57	26	51	9	12	1.70
4153--4198	22	2.1	22	91	0	74	60	0	2	36	1.09
4153--4187	16	2.3	15	95	5	61	62	0	0	37	0.95
5267--5525	29	9.0	28	78	10	204	36	24	3	36	1.71
5306--5525	57	3.8	57	80	6	207	37	25	2	35	1.69
12259--12283	11	2.3	11	100	0	50	32	0	0	68	0.90
13283--13452	85	2.0	84	94	1	295	27	30	13	28	1.94
14314--14368	21	2.6	21	94	0	92	32	25	16	25	1.96
14535--14568	17	2.0	17	88	0	50	35	26	8	29	1.87
18457--18706	116	2.2	115	87	4	369	33	24	20	21	1.97
25888--26368	158	3.0	158	86	0	640	30	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31943--31971	14	2.0	15	93	6	51	51	13	0	34	1.42
34263--34345	43	1.9	43	85	4	114	61	13	1	24	1.39
34307--34375	19	3.5	19	67	19	52	56	15	2	24	1.53
34280--34375	43	2.3	42	85	7	124	57	16	2	23	1.50
34381--34458	22	3.6	21	78	11	61	47	16	1	34	1.55
34405--34458	23	2.4	22	87	9	74	46	18	0	35	1.50
34474--34503	15	2.0	15	93	0	51	83	16	0	0	0.65
40707--40758	22	2.4	22	90	3	79	23	15	13	48	1.80
41041--41147	10	11.1	10	68	23	61	57	4	0	36	1.26
41044--41155	48	2.4	46	79	11	129	58	4	0	35	1.24
41042--41278	9	24.2	9	70	19	104	58	3	3	33	1.34
41043--41278	19	12.0	19	68	13	104	58	3	3	33	1.34
41516--41567	9	6.0	9	80	8	54	48	0	1	50	1.12
50105--50135	16	2.0	16	93	6	55	67	6	0	25	1.14
68322--68378	21	2.9	21	82	10	75	54	0	0	45	0.99
68322--68385	19	3.2	20	76	14	69	53	0	0	46	1.00
68322--68411	38	2.3	38	77	7	92	51	2	1	45	1.21
68818--68857	3	13.7	3	89	5	64	32	0	2	65	1.06
71744--71864	58	2.1	58	96	0	224	33	13	17	36	1.88
76208--76256	21	2.3	21	82	10	55	48	2	12	36	1.52
77108--77261	41	3.8	41	90	0	227	38	10	24	26	1.88
78675--78722	20	2.4	20	85	0	78	56	4	8	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85605--85684	17	4.6	17	70	7	63	38	2	6	52	1.40
86462--86554	3	30.3	3	70	12	55	54	3	1	40	1.23
86507--86554	13	3.8	13	77	5	53	50	2	2	45	1.25
87558--87882	29	10.9	30	68	17	151	31	25	5	38	1.79
87563--87882	59	5.4	59	80	9	242	30	25	5	38	1.79
87683--87765	30	2.8	28	76	18	80	32	28	3	34	1.75
87608--87823	119	1.8	118	85	6	303	29	25	5	39	1.77
87623--87882	59	4.4	59	81	6	262	29	25	6	38	1.81
98783--98818	18	2.0	18	94	0	63	19	11	11	58	1.62
99248--99847	49	12.3	49	73	10	422	39	19	24	16	1.91
99248--99781	98	5.4	100	79	6	493	39	20	24	16	1.92
99248--99683	147	3.0	146	78	7	479	39	20	24	15	1.92
99743--99832	47	1.9	47	88	0	135	38	17	24	18	1.92
100308--100351	17	2.6	17	88	0	70	45	0	2	52	1.13
101163--101221	9	6.9	9	77	11	61	57	3	0	38	1.15
102218--102480	30	8.9	30	68	15	147	32	28	3	36	1.73
102213--102481	59	4.6	57	79	10	240	31	28	2	36	1.73
102223--102476	29	8.6	28	71	17	105	32	27	3	37	1.73
104571--104608	5	7.2	5	88	11	58	21	2	0	76	0.91
106013--106175	82	2.0	81	98	0	308	20	13	36	29	1.91
110785--110837	21	2.5	21	81	6	63	24	13	22	39	1.90
113449--113496	22	2.2	21	78	10	51	22	20	2	54	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114463--114491	3	10.0	3	92	7	51	68	0	0	31	0.89
116469--116549	41	2.0	41	85	4	110	29	24	9	35	1.88
116521--116734	41	5.2	41	90	0	320	27	24	12	35	1.92
116497--116734	82	2.9	82	86	2	336	27	24	12	35	1.92
119022--119200	89	2.0	89	97	0	340	43	12	30	14	1.82
134686--134729	6	7.3	6	94	0	61	61	6	15	15	1.54
146222--146293	21	3.4	21	90	0	108	30	11	26	31	1.91
150932--150978	22	2.3	20	85	10	60	44	4	17	34	1.68
153853--153879	14	1.9	14	100	0	54	37	14	14	33	1.88
163708--163758	17	3.0	17	94	0	93	23	13	0	62	1.31
164015--164040	13	2.0	13	100	0	52	46	7	15	30	1.74
174755--174818	31	2.1	31	96	0	119	17	12	17	53	1.73
176619--176796	52	3.5	51	75	10	186	27	15	23	33	1.95
183006--183064	31	1.9	31	92	0	100	33	8	11	45	1.71
183006--183071	31	2.1	31	88	0	96	33	10	12	43	1.76
185680--185833	55	2.7	55	79	9	177	42	3	3	50	1.34
185925--186018	44	2.1	45	88	7	138	37	27	4	30	1.76
186032--186066	16	2.2	16	89	0	52	28	14	2	54	1.54
185953--186133	94	1.9	94	87	2	265	33	23	6	37	1.80
185925--186112	46	4.1	46	73	13	145	35	23	5	35	1.78
186094--186131	16	2.4	16	90	0	58	31	23	5	39	1.77
186175--186236	31	2.0	31	90	0	97	32	8	12	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188568--188598	6	5.2	6	96	0	53	64	0	16	19	1.29
189268--189328	9	6.4	9	80	14	61	26	3	0	70	1.02
189268--189354	28	3.1	28	83	6	88	33	2	1	63	1.15
189288--189354	9	7.2	10	75	11	54	37	0	1	61	1.05
189440--189469	9	3.3	9	90	0	51	30	10	13	46	1.75
190084--190145	17	3.6	17	72	10	54	35	1	0	62	1.05
192952--192983	8	3.8	9	88	12	50	21	6	0	71	1.07
193030--193082	23	2.2	24	83	3	63	24	5	1	67	1.22
201636--201675	9	4.6	9	96	3	73	42	0	0	57	0.98
212010--212039	12	2.4	13	94	5	53	63	0	0	36	0.95
218435--218472	20	1.9	20	88	0	58	26	15	31	26	1.96
219455--219498	22	2.0	22	100	0	88	40	4	22	31	1.74

Tables:   1

The End!