genome.fa.s9953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009953.1 Kokia drynarioides strain JFW-HI SEQ_124698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113026

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397--430	17	1.9	18	94	5	61	29	2	26	41	1.70
11849--11888	17	2.4	17	83	4	55	72	5	0	22	1.04
12109--12243	49	2.7	50	75	10	125	52	4	6	36	1.48
14555--14610	25	2.2	27	78	12	64	53	5	1	39	1.34
20342--20529	24	7.7	24	70	10	112	19	26	16	37	1.92
20337--20535	50	4.0	50	82	5	217	19	25	16	38	1.92
22117--22356	30	8.1	30	74	12	192	33	4	26	35	1.77
22228--22356	58	2.2	59	87	5	181	36	1	27	34	1.66
24186--24673	208	2.3	209	85	2	669	24	21	16	37	1.94
24717--24806	39	2.3	38	88	3	126	27	16	27	27	1.97
24821--25032	41	5.0	42	80	8	227	29	16	20	33	1.94
24821--25032	87	2.5	84	82	6	252	29	16	20	33	1.94
25334--25470	50	2.8	48	72	8	132	21	31	14	32	1.93
25503--25858	50	7.1	50	74	9	269	19	30	16	34	1.93
25598--25912	99	3.2	99	81	5	323	18	31	15	33	1.93
25647--25912	50	5.4	50	81	4	279	18	31	16	33	1.93
25598--25908	50	6.3	48	75	10	200	18	31	16	34	1.93
26882--26949	16	4.1	16	76	16	59	2	17	0	79	0.86
26886--26915	8	3.8	8	100	0	60	0	23	0	76	0.78
26874--26949	28	2.7	27	78	8	73	3	17	0	78	0.89
30013--30120	29	3.6	30	81	3	112	37	11	22	28	1.88
30180--30243	30	2.2	29	88	8	94	31	0	25	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30187--30320	30	4.4	29	77	10	85	34	0	27	37	1.63
30516--30582	29	2.3	28	77	7	80	41	11	16	29	1.84
29861--30812	477	2.0	475	90	1	1478	40	6	21	31	1.79
30847--30876	7	4.3	7	91	0	51	43	0	0	56	0.99
30863--30939	17	4.6	17	80	3	93	33	1	6	58	1.32
30863--30939	34	2.3	34	88	2	111	33	1	6	58	1.32
32721--33191	29	16.2	29	80	6	395	35	25	2	36	1.70
33472--33654	97	1.9	97	94	0	321	26	16	18	38	1.91
45210--45653	39	11.3	39	68	12	203	23	29	20	27	1.99
45208--45474	121	2.2	116	82	7	297	22	29	20	26	1.98
45369--45672	78	3.9	78	81	6	312	23	27	21	27	1.99
45248--45476	121	1.9	121	83	5	302	22	29	20	27	1.99
46040--46069	7	4.3	7	100	0	60	26	0	0	73	0.84
46052--46129	34	2.3	35	84	6	106	30	1	6	61	1.29
46054--46129	17	4.5	17	80	3	82	30	1	6	61	1.29
46805--46834	11	2.8	11	95	5	53	60	0	0	40	0.97
46975--47021	3	15.7	3	81	0	58	59	0	0	40	0.97
47923--48189	29	9.2	29	69	14	92	34	25	3	35	1.74
47923--48066	29	4.9	29	79	8	109	36	24	2	36	1.70
48892--48975	42	2.0	42	100	0	168	26	11	21	40	1.88
49256--49306	22	2.4	22	87	9	70	60	7	11	19	1.55
51421--51445	11	2.3	11	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51926--51967	18	2.3	18	88	12	59	57	4	0	38	1.20
56231--56262	15	2.1	16	94	5	57	62	21	0	15	1.32
56371--56422	24	2.2	24	85	0	68	55	7	3	32	1.46
57133--57180	24	2.0	24	84	8	62	45	2	33	18	1.61
62504--62545	17	2.4	17	92	4	66	47	2	26	23	1.64
62635--62670	18	1.9	19	94	5	65	44	0	2	52	1.15
64252--64317	24	2.8	24	90	0	105	51	16	13	18	1.76
67055--67132	14	5.6	14	72	11	61	52	21	5	20	1.66
67053--67132	28	2.9	28	83	5	108	51	21	5	22	1.67
68018--68114	43	2.3	43	90	0	149	44	12	12	30	1.79
69445--69488	21	2.1	21	95	4	81	59	13	0	27	1.35
69561--69610	25	2.1	25	88	7	77	70	8	2	20	1.23
69600--69661	31	2.2	27	76	20	65	64	11	0	24	1.26
69882--69949	4	16.5	4	78	6	73	0	23	1	75	0.89
69880--69946	25	2.7	26	86	6	93	0	22	2	74	0.95
69877--69955	21	3.7	21	76	8	70	0	22	3	73	0.99
69882--69957	25	3.0	25	84	3	91	0	23	2	73	0.95
69886--69941	17	2.9	19	82	10	62	0	23	1	75	0.90
71147--71270	59	2.1	59	86	1	169	25	16	8	49	1.74
71150--71266	31	3.9	28	75	17	94	26	17	9	47	1.78
71490--71564	29	2.6	29	80	4	89	54	12	4	29	1.55
72476--72526	24	2.1	24	85	7	68	11	9	1	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72947--72978	15	2.1	15	94	0	55	65	6	3	25	1.31
73094--73159	34	2.0	33	82	8	80	34	1	1	62	1.14
78931--79178	41	6.0	41	85	0	316	25	24	26	23	2.00
85893--86153	42	6.1	43	81	4	269	25	18	29	27	1.98
85893--86153	85	3.1	85	83	5	289	25	18	29	27	1.98
88999--89031	6	5.3	6	92	7	57	21	0	0	78	0.75
89473--89506	13	2.6	13	85	0	50	35	2	0	61	1.11
99192--99235	6	7.5	6	82	5	54	22	27	0	50	1.50
99186--99235	12	4.4	11	82	2	55	24	26	0	50	1.50
99173--99238	17	3.8	17	80	7	71	27	22	0	50	1.50
103844--104111	94	3.0	86	76	12	256	44	16	6	32	1.73
103852--104112	86	2.9	92	78	11	201	44	16	6	32	1.73
104265--104317	10	5.3	10	73	8	54	66	1	1	30	1.13
104263--104327	29	2.2	29	83	5	78	66	1	3	29	1.16
104498--104585	18	4.7	19	73	14	67	29	2	3	64	1.22
104499--104618	18	6.5	19	70	14	65	30	2	2	64	1.20
105937--105969	13	2.6	13	90	4	50	42	9	9	39	1.68
111029--111458	29	14.8	29	77	7	381	35	30	3	30	1.74
111038--111458	59	7.2	58	82	6	408	35	30	3	30	1.74
111053--111399	144	2.4	144	88	3	500	34	31	3	29	1.73

Tables:   1

The End!