Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009955.1 Kokia drynarioides strain JFW-HI SEQ_124701, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15252
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32

Warning! 133 characters in sequence are not A, C, G, or T


Found at i:1004 original size:21 final size:22

Alignment explanation


    Indices: 975--1015  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        965 AGAGAAACTA

                          *       
        975 TCAAATAGT-TTTATAAAATTT
          1 TCAAATAGTCTTTACAAAATTT

                *               
        996 TCAATTAGTCTTTACAAAAT
          1 TCAAATAGTCTTTACAAAAT

       1016 GGCATGGCCG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    8  0.47
  22    9  0.53

ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44


Consensus pattern (22 bp):   
TCAAATAGTCTTTACAAAATTT

Found at i:2358 original size:198 final size:199

Alignment explanation


    Indices: 1987--2362  Score: 549
    Period size: 198  Copynumber: 1.9  Consensus size: 199

       1977 TTCCGTACGA

                              * *                *                           
       1987 TTATAGGGATATAAGGATTATTTCCTATTTTATCTTGTGCAATTTTTGGTGATTTTTAAAAGTCA
          1 TTATAGGGATATAAGGATCACTTCCTATTTTATCTTGAGCAATTTTTGGTGATTTTTAAAAGTCA

                                            *             *           *      
       2052 CAACTAAATCTGTTTTTATAAGAATTCTGCTGTAAGATTTTTATGACCTTTCAACACTCAAAAAT
         66 CAACTAAATCTGTTTTTATAAGAATTCTGCTGCAAGATTTTTATGAACTTTCAACACTAAAAAAT

                   *      *                   ***                            
       2117 TCATATCTTTTAAACTAAAAATCAAAATAAATATCTGTTTGTTCTAAATGAAACTAAACGTCCAT
        131 TCATATCCTTTAAAATAAAAATCAAAATAAATATAAATTTGTTCTAAATGAAACTAAACGTCCAT

                
       2182 ATAG
        196 ATAG

                            *                        *               *     * 
       2186 TTATAGGGATATAAGGCTCACTTCCTATTTTATCTTGAGCAGTTTTTGGTGATTTTTCAAAGTTA
          1 TTATAGGGATATAAGGATCACTTCCTATTTTATCTTGAGCAATTTTTGGTGATTTTTAAAAGTCA

             *                        *      *                               
       2251 CTACTAAATCTG-TTTTATAAGAATTTTGCTGCCAGATTTTTATGAACTTTCAACACTAAAAAAT
         66 CAACTAAATCTGTTTTTATAAGAATTCTGCTGCAAGATTTTTATGAACTTTCAACACTAAAAAAT

                                         *   *               
       2315 TCATATCCTTTAAAATAAAAAT-AGAAATCAATCTAAATTTGTTCTAAA
        131 TCATATCCTTTAAAATAAAAATCA-AAATAAATATAAATTTGTTCTAAA

       2363 CAAAACTAGA


Statistics
Matches: 156,  Mismatches: 20, Indels: 3
        0.87            0.11        0.02

Matches are distributed among these distances:
 197    1  0.01
 198   86  0.55
 199   69  0.44

ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40


Consensus pattern (199 bp):   
TTATAGGGATATAAGGATCACTTCCTATTTTATCTTGAGCAATTTTTGGTGATTTTTAAAAGTCA
CAACTAAATCTGTTTTTATAAGAATTCTGCTGCAAGATTTTTATGAACTTTCAACACTAAAAAAT
TCATATCCTTTAAAATAAAAATCAAAATAAATATAAATTTGTTCTAAATGAAACTAAACGTCCAT
ATAG

Done.