genome.fa.s9969.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009969.1 Kokia drynarioides strain JFW-HI SEQ_124718, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130369

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55--97	21	2.1	21	86	4	61	60	11	0	27	1.31
763--797	11	2.8	13	83	16	56	8	5	17	68	1.35
871--895	11	2.3	11	100	0	50	92	0	0	8	0.40
2137--2179	15	2.9	15	86	6	52	48	0	2	48	1.14
8485--8529	18	2.5	17	82	10	54	60	0	4	35	1.17
8550--8586	17	2.2	17	90	0	56	62	2	10	24	1.41
8785--8848	11	5.7	11	84	1	83	56	4	9	29	1.51
8786--8864	33	2.4	34	87	6	117	55	5	7	31	1.50
8872--8927	24	2.3	24	81	0	67	19	25	37	17	1.94
27666--27960	52	5.7	52	90	0	466	25	15	24	34	1.95
30812--30890	32	2.4	33	83	12	92	36	6	0	56	1.25
30912--30948	17	2.2	17	90	0	56	24	10	2	62	1.41
30969--31027	12	4.9	12	70	14	50	40	5	1	52	1.33
34054--34136	42	2.0	41	85	2	112	32	12	20	34	1.89
34319--34487	55	3.0	55	76	11	139	32	13	12	42	1.81
36828--36882	27	2.0	27	86	6	76	34	21	32	10	1.89
37181--37230	16	3.2	16	71	21	52	60	6	0	34	1.21
37190--37424	59	4.0	59	94	0	425	52	11	1	32	1.47
37545--37600	28	2.0	28	83	10	71	10	32	21	35	1.88
41047--41629	164	3.6	162	73	15	456	34	0	14	50	1.47
42856--42949	43	2.4	38	79	16	102	34	8	13	43	1.75
43284--43373	43	2.1	43	91	0	144	44	10	12	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48369--48468	7	14.4	7	76	13	64	26	1	23	50	1.56
48369--48421	14	3.8	14	87	7	72	22	0	28	49	1.50
50690--50777	29	3.2	26	68	12	68	34	3	13	48	1.59
51937--52021	43	2.0	43	83	4	109	30	12	9	47	1.74
52920--53021	28	3.6	27	78	6	114	45	20	4	29	1.72
52920--53075	7	22.3	7	72	12	88	46	20	4	28	1.70
52962--53050	35	2.5	35	82	10	110	47	19	5	28	1.72
53845--53884	21	1.9	21	89	0	62	22	7	17	52	1.69
54170--54266	19	5.0	19	65	12	54	60	6	1	31	1.28
54248--54863	146	4.2	139	83	12	579	49	13	1	35	1.53
54502--54558	25	2.2	25	79	14	64	57	7	1	33	1.36
54945--54984	15	2.7	15	96	0	71	22	40	12	25	1.89
54966--55323	192	1.9	186	84	2	432	20	34	16	26	1.93
57125--57181	25	2.2	26	84	9	73	73	8	0	17	1.07
58843--58960	42	2.8	42	90	1	175	25	27	9	37	1.87
67701--67746	22	2.1	22	100	0	92	36	32	8	21	1.84
79286--79336	25	2.0	26	84	3	68	66	0	19	13	1.24
79555--79585	10	3.1	10	95	0	53	41	0	0	58	0.98
80184--80232	24	2.0	25	84	4	64	55	4	0	40	1.19
83507--83547	20	2.0	20	86	9	57	41	0	2	56	1.13
88025--88850	414	2.0	414	98	0	1598	30	20	18	30	1.96
113938--114220	138	2.1	138	94	0	494	40	15	24	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114524--115597	78	13.8	78	79	0	993	25	28	18	27	1.98
114522--115798	39	32.8	37	68	14	416	25	28	18	27	1.98
115609--115897	78	3.7	78	77	4	269	25	28	17	28	1.97
115588--115891	156	1.9	156	84	2	378	26	27	18	27	1.98
118687--118772	39	2.2	40	93	4	156	48	12	6	31	1.68
120220--120357	69	2.0	69	100	0	276	39	23	11	26	1.88
121334--121950	240	2.6	237	81	5	668	32	11	10	44	1.76
125865--125945	42	1.9	42	94	0	144	34	0	12	53	1.39
126928--126970	22	2.0	22	86	9	61	60	4	0	34	1.17
129120--129151	15	2.2	14	94	5	55	3	34	0	62	1.11

Tables:   1

The End!