Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009972.1 Kokia drynarioides strain JFW-HI SEQ_124721, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.35

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:674 original size:11 final size:11

Alignment explanation


    Indices: 658--703  Score: 58
    Period size: 11  Copynumber: 4.3  Consensus size: 11

        648 GGGGAACAAC

                  *   *
        658 GAAAAATGAAG
          1 GAAAAAAGAAA

                       
        669 GAAAAAAGAAA
          1 GAAAAAAGAAA

                     * 
        680 GAAAAAAGAGA
          1 GAAAAAAGAAA

                       
        691 -AAAAAAGAAA
          1 GAAAAAAGAAA

               
        701 GAA
          1 GAA

        704 GGAAGAAGGA


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  10    9  0.30
  11   21  0.70

ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02


Consensus pattern (11 bp):   
GAAAAAAGAAA
Done.