Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009975.1 Kokia drynarioides strain JFW-HI SEQ_124725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4123
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.38

Warning! 166 characters in sequence are not A, C, G, or T


Found at i:937 original size:55 final size:55

Alignment explanation


    Indices: 863--985  Score: 185
    Period size: 55  Copynumber: 2.2  Consensus size: 55

        853 ATTTGGATTG

                *     *                                    *   *    
        863 AATCGATTGTTATGCTAGAATATTGCTT-TATTTGAATTGATTGTTTTTATGTTTA
          1 AATCAATTGTCATGCTAGAATATTGCTTCT-TTTGAATTGATTGTTTATATATTTA

                          *                                        
        918 AATCAATTGTCATGTTAGAATATTGCTTCTTTTGAATTGATTGTTTATATATTTA
          1 AATCAATTGTCATGCTAGAATATTGCTTCTTTTGAATTGATTGTTTATATATTTA

                         
        973 AATCAATTGTCAT
          1 AATCAATTGTCAT

        986 ATTGAAATAC


Statistics
Matches: 62,  Mismatches: 5, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  55   61  0.98
  56    1  0.02

ACGTcount: A:0.28, C:0.07, G:0.14, T:0.50


Consensus pattern (55 bp):   
AATCAATTGTCATGCTAGAATATTGCTTCTTTTGAATTGATTGTTTATATATTTA
Done.