Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009991.1 Kokia drynarioides strain JFW-HI SEQ_124746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.36


Found at i:551 original size:13 final size:13

Alignment explanation


    Indices: 533--557  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        523 ATCTAACGTG

                         
        533 TTAAAAAATGTAT
          1 TTAAAAAATGTAT

                        
        546 TTAAAAAATGTA
          1 TTAAAAAATGTA

        558 AAAGAATTCT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36


Consensus pattern (13 bp):   
TTAAAAAATGTAT

Found at i:940 original size:31 final size:31

Alignment explanation


    Indices: 890--969  Score: 97
    Period size: 31  Copynumber: 2.6  Consensus size: 31

        880 AACTATGAAA

                   *   *          *        
        890 ATTTTTAATTTAGTCACTAACATTTTAGATC
          1 ATTTTTATTTTGGTCACTAACAGTTTAGATC

                          *               *
        921 ATTTTTATTTTGGTTACTAACAGTTTAGATT
          1 ATTTTTATTTTGGTCACTAACAGTTTAGATC

            *   *             
        952 GTTTCTATTTTGGTCACT
          1 ATTTTTATTTTGGTCACT

        970 CTTCGTTAAA


Statistics
Matches: 41,  Mismatches: 8, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  31   41  1.00

ACGTcount: A:0.25, C:0.11, G:0.11, T:0.53


Consensus pattern (31 bp):   
ATTTTTATTTTGGTCACTAACAGTTTAGATC
Done.