Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009993.1 Kokia drynarioides strain JFW-HI SEQ_124748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2013
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:1215 original size:23 final size:23

Alignment explanation


    Indices: 1189--1241  Score: 88
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       1179 ACGTGGCATT

                *                  
       1189 CAGTTAGTAGCTTCTAGAAGGTC
          1 CAGTCAGTAGCTTCTAGAAGGTC

                                   
       1212 CAGTCAGTAGCTTCTAGAAGGTC
          1 CAGTCAGTAGCTTCTAGAAGGTC

            *      
       1235 TAGTCAG
          1 CAGTCAG

       1242 CAAGGACGGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28


Consensus pattern (23 bp):   
CAGTCAGTAGCTTCTAGAAGGTC

Found at i:1419 original size:7 final size:7

Alignment explanation


    Indices: 1407--1431  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       1397 AGCTAGAAAA

                   
       1407 TCATCCC
          1 TCATCCC

                   
       1414 TCATCCC
          1 TCATCCC

                   
       1421 TCATCCC
          1 TCATCCC

                
       1428 TCAT
          1 TCAT

       1432 TACTTTGTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32


Consensus pattern (7 bp):   
TCATCCC
Done.