Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 20 of 93
Found at i:8913492 original size:12 final size:12
Alignment explanation
Indices: 8913475--8913499 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8913465 GATTATATAA
8913475 TTTTATTAATTT
1 TTTTATTAATTT
8913487 TTTTATTAATTT
1 TTTTATTAATTT
8913499 T
1 T
8913500 AAAAAAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTAATTT
Found at i:8913961 original size:23 final size:22
Alignment explanation
Indices: 8913928--8913986 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
8913918 ATTTTTATAT
8913928 TTTTATT-TTAAATTAAATAAAA
1 TTTTATTATTAAATTAAAT-AAA
* *
8913950 TTTTATTATTAATTTTAATAAA
1 TTTTATTATTAAATTAAATAAA
8913972 TTATTATTAATTAAA
1 TT-TTATT-ATTAAA
8913987 ATATCATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 12 0.39
23 14 0.45
24 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTTATTATTAAATTAAATAAA
Found at i:8913989 original size:20 final size:20
Alignment explanation
Indices: 8913952--8913989 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8913942 AAATAAAATT
**
8913952 TTATTATTAATTTTAATAAA
1 TTATTATTAATTAAAATAAA
8913972 TTATTATTAATTAAAATA
1 TTATTATTAATTAAAATA
8913990 TCATTTATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATTATTAATTAAAATAAA
Found at i:8941199 original size:28 final size:29
Alignment explanation
Indices: 8941159--8941213 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
8941149 TGTAATCTAA
8941159 AATAAAAATATAAAAACTTGATTGAATAT
1 AATAAAAATATAAAAACTTGATTGAATAT
* * *
8941188 AATAAAAA-ATAAGAATTTGTTTGAAT
1 AATAAAAATATAAAAACTTGATTGAAT
8941214 TTTTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (29 bp):
AATAAAAATATAAAAACTTGATTGAATAT
Found at i:8941666 original size:36 final size:36
Alignment explanation
Indices: 8941595--8941668 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
8941585 ATTAATATAT
* *
8941595 AAAAAAAGGTTGGTTAAGATGATAAAGGTTATATTA
1 AAAAAAAAGTTGGTTAAGATGATAAACGTTATATTA
* * *
8941631 AAAAAAAAGTTGGTTGAA-ATGGTAAACTTTTTATTA
1 AAAAAAAAGTTGGTT-AAGATGATAAACGTTATATTA
8941667 AA
1 AA
8941669 GGTAGGAAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 30 0.94
37 2 0.06
ACGTcount: A:0.47, C:0.01, G:0.19, T:0.32
Consensus pattern (36 bp):
AAAAAAAAGTTGGTTAAGATGATAAACGTTATATTA
Found at i:8945257 original size:20 final size:19
Alignment explanation
Indices: 8945232--8945273 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
8945222 TACAAACAAA
8945232 TTTATTC-TTCTCTTCTCTTC
1 TTTATTCTTTCTC-TCT-TTC
8945252 TTTATTCTTTCTCTCTTTC
1 TTTATTCTTTCTCTCTTTC
8945271 TTT
1 TTT
8945274 TCAATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATTCTTTCTCTCTTTC
Found at i:8957338 original size:114 final size:114
Alignment explanation
Indices: 8957138--8957364 Score: 427
Period size: 114 Copynumber: 2.0 Consensus size: 114
8957128 TATATAAATA
8957138 AATAGATCAAAACTAAATAGAACAATTAAAATGACTAAAAAGTAAACACAAAAAACCCATAAAAA
1 AATAGATCAAAACTAAATAGAACAATTAAAATGACTAAAAAGTAAACACAAAAAACCCATAAAAA
*
8957203 AAATATACTTATTTCCACGTACTGCAGACCTCCACCATGTACAGAAACG
66 AAATATACTTATTTCCACGTACTGCAAACCTCCACCATGTACAGAAACG
* *
8957252 AATAGATCAAAACTAAGTAGAACAATTAAAATGACTAAAACGTAAACACAAAAAACCCATAAAAA
1 AATAGATCAAAACTAAATAGAACAATTAAAATGACTAAAAAGTAAACACAAAAAACCCATAAAAA
8957317 AAATATACTTATTTCCACGTACTGCAAACCTCCACCATGTACAGAAAC
66 AAATATACTTATTTCCACGTACTGCAAACCTCCACCATGTACAGAAAC
8957365 AAAACACAGT
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.52, C:0.21, G:0.08, T:0.19
Consensus pattern (114 bp):
AATAGATCAAAACTAAATAGAACAATTAAAATGACTAAAAAGTAAACACAAAAAACCCATAAAAA
AAATATACTTATTTCCACGTACTGCAAACCTCCACCATGTACAGAAACG
Found at i:8959385 original size:1 final size:1
Alignment explanation
Indices: 8959379--8959426 Score: 87
Period size: 1 Copynumber: 48.0 Consensus size: 1
8959369 GACTGGAAGC
*
8959379 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
8959427 AGGAATCGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:0.00, G:0.98, T:0.02
Consensus pattern (1 bp):
G
Found at i:8959765 original size:11 final size:11
Alignment explanation
Indices: 8959749--8959783 Score: 56
Period size: 10 Copynumber: 3.4 Consensus size: 11
8959739 ATTGTACATG
8959749 GAAAAAAATAT
1 GAAAAAAATAT
8959760 GAAAAAAATAT
1 GAAAAAAATAT
8959771 -AAAAAAATA-
1 GAAAAAAATAT
8959780 GAAA
1 GAAA
8959784 TAGAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 12 0.52
11 11 0.48
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (11 bp):
GAAAAAAATAT
Found at i:8960376 original size:8 final size:8
Alignment explanation
Indices: 8960350--8960396 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
8960340 ATTGCTTATG
8960350 AAAAATAT
1 AAAAATAT
*
8960358 AATAATAAT
1 AAAAAT-AT
8960367 AAAAATAT
1 AAAAATAT
8960375 AAAAATAT
1 AAAAATAT
*
8960383 ATAAA-AT
1 AAAAATAT
8960390 AAAAATA
1 AAAAATA
8960397 GTATAATGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 6 0.18
8 20 0.61
9 7 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAAATAT
Found at i:8960389 original size:17 final size:17
Alignment explanation
Indices: 8960350--8960396 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
8960340 ATTGCTTATG
*
8960350 AAAAATATAATAATAAT
1 AAAAATATAAAAATAAT
8960367 AAAAATATAAAAAT-AT
1 AAAAATATAAAAATAAT
*
8960383 ATAAA-ATAAAAATA
1 AAAAATATAAAAATA
8960397 GTATAATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
17 13 0.48
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAATATAAAAATAAT
Found at i:8960393 original size:15 final size:16
Alignment explanation
Indices: 8960373--8960402 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8960363 TAATAAAAAT
8960373 ATAAAAATA-TATAAA
1 ATAAAAATAGTATAAA
8960388 ATAAAAATAGTATAA
1 ATAAAAATAGTATAA
8960403 TGAAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
ATAAAAATAGTATAAA
Found at i:8960569 original size:14 final size:13
Alignment explanation
Indices: 8960500--8960570 Score: 52
Period size: 14 Copynumber: 5.2 Consensus size: 13
8960490 GTAAAGTATG
8960500 AAAAAAATAATAAT
1 AAAAAAA-AATAAT
* * *
8960514 AAGAAATAAGAAT
1 AAAAAAAAATAAT
**
8960527 AGAAAATATGATAAT
1 A-AAAA-AAAATAAT
*
8960542 AAAAAAATATAAT
1 AAAAAAAAATAAT
8960555 AAAATAAAAATAAT
1 AAAA-AAAAATAAT
8960569 AA
1 AA
8960571 TTAATTAATA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
13 16 0.36
14 22 0.49
15 7 0.16
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (13 bp):
AAAAAAAAATAAT
Found at i:8960625 original size:16 final size:17
Alignment explanation
Indices: 8960606--8960638 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
8960596 TAGATAATTG
8960606 CATATATAT-ATTGCAT
1 CATATATATCATTGCAT
8960622 CATATATATCATTGCAT
1 CATATATATCATTGCAT
8960639 ATAAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.42
Consensus pattern (17 bp):
CATATATATCATTGCAT
Found at i:8960646 original size:16 final size:14
Alignment explanation
Indices: 8960593--8960647 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 14
8960583 AACTAAAAAA
8960593 ATATAGATA-ATTGC
1 ATATA-ATATATTGC
8960607 ATAT-ATATATTGC
1 ATATAATATATTGC
8960620 ATCATATATATCATTGC
1 AT-ATA-ATAT-ATTGC
8960637 ATATAA-ATATT
1 ATATAATATATT
8960648 TCTGTTTTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
12 3 0.08
13 10 0.28
14 8 0.22
15 1 0.03
16 7 0.19
17 7 0.19
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (14 bp):
ATATAATATATTGC
Found at i:8964406 original size:217 final size:216
Alignment explanation
Indices: 8964031--8964444 Score: 774
Period size: 217 Copynumber: 1.9 Consensus size: 216
8964021 TTTCCCAGGA
* *
8964031 ATGAATTGAGTGAGCGGTTGATCGATCACCTTAGGATGGTTAGGGACCAATATGACAATGTTGGT
1 ATGAATTGAGTGAGCGGTTGATCGATCACCTCAGGATGGTTAGGGACCAATATGACAAAGTTGGT
*
8964096 TTTTCGTTTTGATAGTTATGTAATGGTTTTAGACAATGATGTAATCGGATATTTAAGTTTTTTGG
66 TTTTCCTTTTGATAGTTATGTAATGGTTTTAGACAATGATGTAATCGGATATTTAAGTTTTTTGG
8964161 ATGCGAATTTTCTTATGGTAAATGTTGGATGACCAATATTTTTCCTATTTTTTCTTTTCAATACA
131 ATGCGAATTTTCTTATGGTAAATGTTGGATGACCAATATTTTTCCTATTTTTTCTTTTCAATACA
8964226 TTNCGAAAGATTCTTTCGAGGG
196 TT-CGAAAGATTCTTTCGAGGG
8964248 ATGAATTGAGTGAGCGGTTGATCGATCACCTCAGGATGGTTAGGGACCAATATGACAAAGTTGGT
1 ATGAATTGAGTGAGCGGTTGATCGATCACCTCAGGATGGTTAGGGACCAATATGACAAAGTTGGT
*
8964313 TTTTCCTTTTGATAGTTATGTAATGGTTTTAGGCAATGATGTAATCGGATATTTAAGTTTTTTGG
66 TTTTCCTTTTGATAGTTATGTAATGGTTTTAGACAATGATGTAATCGGATATTTAAGTTTTTTGG
*
8964378 ATGCGAATTTTCTTATGGTAAATGTTGGATGGCCAATATTTTTCCTATTTTTTCTTTTCAATACA
131 ATGCGAATTTTCTTATGGTAAATGTTGGATGACCAATATTTTTCCTATTTTTTCTTTTCAATACA
8964443 TT
196 TT
8964445 TCATTTGCAT
Statistics
Matches: 192, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
217 192 1.00
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.41
Consensus pattern (216 bp):
ATGAATTGAGTGAGCGGTTGATCGATCACCTCAGGATGGTTAGGGACCAATATGACAAAGTTGGT
TTTTCCTTTTGATAGTTATGTAATGGTTTTAGACAATGATGTAATCGGATATTTAAGTTTTTTGG
ATGCGAATTTTCTTATGGTAAATGTTGGATGACCAATATTTTTCCTATTTTTTCTTTTCAATACA
TTCGAAAGATTCTTTCGAGGG
Found at i:8971973 original size:45 final size:45
Alignment explanation
Indices: 8971909--8972016 Score: 207
Period size: 45 Copynumber: 2.4 Consensus size: 45
8971899 ATTTCAAGTT
*
8971909 GAAAACCTGAAAAGGCGGCTTGAATTTGGGAAATGTGTTTAGGGC
1 GAAAACCTGAAAGGGCGGCTTGAATTTGGGAAATGTGTTTAGGGC
8971954 GAAAACCTGAAAGGGCGGCTTGAATTTGGGAAATGTGTTTAGGGC
1 GAAAACCTGAAAGGGCGGCTTGAATTTGGGAAATGTGTTTAGGGC
8971999 GAAAACCTGAAAGGGCGG
1 GAAAACCTGAAAGGGCGG
8972017 TCTAGACAAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.21
Consensus pattern (45 bp):
GAAAACCTGAAAGGGCGGCTTGAATTTGGGAAATGTGTTTAGGGC
Found at i:8972861 original size:37 final size:37
Alignment explanation
Indices: 8972809--8973235 Score: 578
Period size: 37 Copynumber: 11.5 Consensus size: 37
8972799 AAAAAGGTTA
*
8972809 CGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
* *
8972846 TGTTGCCTCAATTTTGAGGAATTCA-TTTTAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
* * *
8972882 CGTTGCCTCAATTTTGAAGAGTCCATTTTAAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
8972919 CGTTGCCTCAATTTTGAGGAGTTCA-TTTTAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
*
8972955 CGTTGCCTCAATTTTGAGGAGTTTA-TTTTAGAAGGT-T
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTA-AA-GTCT
*
8972992 GCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAGTCT
1 -CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
*
8973030 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
8973067 CGTTGCCTCAATTTTGAGGAGTTCA-TTTTAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
* * *
8973103 CGTTGCCTCAGTTTTGAGGAGTTTATTTTAAAAGTCT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
*
8973140 CGTTACCTCAATTTTGAGGAGTTCATTTTTAAAAGTCAT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTT-AAAGTC-T
* * * * *
8973179 -ATTGTCTCACTTTTGAGGAATTCATTTTTAAAAGTTT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTT-AAAGTCT
**
8973216 CGTTGCCTCAGCTTTGAGGA
1 CGTTGCCTCAATTTTGAGGA
8973236 ATCTAAAAAA
Statistics
Matches: 346, Mismatches: 34, Indels: 19
0.87 0.09 0.05
Matches are distributed among these distances:
36 104 0.30
37 157 0.45
38 79 0.23
39 6 0.02
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (37 bp):
CGTTGCCTCAATTTTGAGGAGTTCATTTTTAAAGTCT
Found at i:8972928 original size:73 final size:73
Alignment explanation
Indices: 8972809--8973235 Score: 606
Period size: 73 Copynumber: 5.8 Consensus size: 73
8972799 AAAAAGGTTA
* * * *
8972809 CGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAGTCTTGTTGCCTCAATTTTGAGGAATTCATTT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCATTT
8972874 TAAAGTCT
66 TAAAGTCT
* *
8972882 CGTTGCCTCAATTTTGAAGAGTCCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCATTT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCATTT
8972947 TAAAGTCT
66 TAAAGTCT
* * *
8972955 CGTTGCCTCAATTTTGAGGAGTTTATTTTAGAAGGT-TGCGTTGCCTCAGTTTTGAGGAGTTCAT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTA-AAAGTCT-CGTTGCCTCAATTTTGAGGAGTTCA-
8973019 TTTTAAAGTCT
63 TTTTAAAGTCT
8973030 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCATTT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCATTT
8973095 TAAAGTCT
66 TAAAGTCT
* * *
8973103 CGTTGCCTCAGTTTTGAGGAGTTTATTTTAAAAGTCTCGTTACCTCAATTTTGAGGAGTTCATTT
1 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCA-TT
8973168 TTAAAAGTCAT
65 TT-AAAGTC-T
* * * * * **
8973179 -ATTGTCTCACTTTTGAGGAATTCATTTTTAAAAGTTTCGTTGCCTCAGCTTTGAGGA
1 CGTTGCCTCAATTTTGAGGAGTTCA-TTTTAAAAGTCTCGTTGCCTCAATTTTGAGGA
8973236 ATCTAAAAAA
Statistics
Matches: 320, Mismatches: 26, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
73 165 0.52
74 60 0.19
75 66 0.21
76 29 0.09
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (73 bp):
CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCTCGTTGCCTCAATTTTGAGGAGTTCATTT
TAAAGTCT
Found at i:8976920 original size:15 final size:17
Alignment explanation
Indices: 8976895--8976934 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
8976885 TATTTATATA
8976895 ATTTTACTTAAT-AAATT
1 ATTTTA-TTAATAAAATT
8976912 -TTTTATTAATAAAATT
1 ATTTTATTAATAAAATT
8976928 ATTTTAT
1 ATTTTAT
8976935 GATTTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.24
16 10 0.48
17 6 0.29
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAATAAAATT
Found at i:8977047 original size:22 final size:23
Alignment explanation
Indices: 8977017--8977085 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 23
8977007 AATATTATTG
* *
8977017 ATAACTAAATTATTAATTTT-AT
1 ATAATTAAATTATTAATTTTAAA
*
8977039 ATAATTAAATATATAAAATTATTAAA
1 ATAATTAAAT-TAT-TAATT-TTAAA
*
8977065 ATAATTAAAATAATTAATTTT
1 ATAATT-AAATTATTAATTTT
8977086 TTGATTCATA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
22 9 0.24
23 3 0.08
24 6 0.16
25 6 0.16
26 9 0.24
27 4 0.11
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATTAAATTATTAATTTTAAA
Found at i:8980356 original size:24 final size:24
Alignment explanation
Indices: 8980320--8980373 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8980310 CGGAGGCGGA
* *
8980320 GGCGATGGTGGTTGTGGGGGAGGT
1 GGCGGTGGAGGTTGTGGGGGAGGT
*
8980344 GGCGGTGGAGGTTGTGGGGGCGGT
1 GGCGGTGGAGGTTGTGGGGGAGGT
8980368 GGCGGT
1 GGCGGT
8980374 TGCTGAGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.06, C:0.07, G:0.65, T:0.22
Consensus pattern (24 bp):
GGCGGTGGAGGTTGTGGGGGAGGT
Found at i:8980946 original size:24 final size:24
Alignment explanation
Indices: 8980910--8980963 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8980900 CGGAGGCGGA
* *
8980910 GGCGATGGTGGTTGTGGGGGAGGT
1 GGCGGTGGAGGTTGTGGGGGAGGT
*
8980934 GGCGGTGGAGGTTGTGGGGGCGGT
1 GGCGGTGGAGGTTGTGGGGGAGGT
8980958 GGCGGT
1 GGCGGT
8980964 TGCTGAGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.06, C:0.07, G:0.65, T:0.22
Consensus pattern (24 bp):
GGCGGTGGAGGTTGTGGGGGAGGT
Found at i:8981163 original size:590 final size:589
Alignment explanation
Indices: 8980045--8981220 Score: 2343
Period size: 590 Copynumber: 2.0 Consensus size: 589
8980035 TAGAGCTGCC
8980045 TTTCAAAAAATAAAAAAAAAATATCTGTTATCTAGAGCAAGCTAAAATAAGGTACAAGGATCAGA
1 TTTCAAAAAATAAAAAAAAAATATCTGTTATCTAGAGCAAGCTAAAATAAGGTACAAGGATCAGA
8980110 AAAATGACGAGGGAGTTGGTAATTCTTGGTGGCAGTGTCCCGAGAGGGGAAGCAGGGGTCTCTGG
66 AAAATGACGAGGGAGTTGGTAATTCTTGGTGGCAGTGTCCCGAGAGGGGAAGCAGGGGTCTCTGG
8980175 TGGCCTGTTCTTGCTTTGCATGATTGTTTTCTCCCTCTCAATTATCGCAATGGTCATCTTCGCTT
131 TGGCCTGTTCTTGCTTTGCATGATTGTTTTCTCCCTCTCAATTATCGCAATGGTCATCTTCGCTT
8980240 GTGGCGATGACAACTCTGAAAAGCCTCGCCGGAATCATGCTGCAGGTGGTTTTTGGGCGGGCGAT
196 GTGGCGATGACAACTCTGAAAAGCCTCGCCGGAATCATGCTGCAGGTGGTTTTTGGGCGGGCGAT
8980305 GGCGGCGGAGGCGGAGGCGATGGTGGTTGTGGGGGAGGTGGCGGTGGAGGTTGTGGGGGCGGTGG
261 GGCGGCGGAGGCGGAGGCGATGGTGGTTGTGGGGGAGGTGGCGGTGGAGGTTGTGGGGGCGGTGG
8980370 CGGTTGCTGAGGATATCTGAATTTATGTGCGTCATTGATTAATTTCAACAGCAACGATTAATAAC
326 CGGTTGCTGAGGATATCTGAATTTATGTGCGTCATTGATTAATTTCAACAGCAACGATTAATAAC
8980435 TTTGTAGTTATAACGTCCTGACAAACTTGTTTGTTGTATTTGTATTTTTTATGAGATTTGTTGAT
391 TTTGTAGTTATAACGTCCTGACAAACTTGTTTGTTGTATTTGTATTTTTTATGAGATTTGTTGAT
8980500 AATATATAGTTGCACCATATCCATGTTCATGTCTTTGTAACCATGATTAAATATAGTCAGGGGTT
456 AATATATAGTTGCACCATATCCATGTTCATGTCTTTGTAACCATGATTAAATATAGTCAGGGGTT
8980565 AAACTATTTCATAATCTTTGCAGATTTTTTTTTTAATAATTAGAGAAGGAGGGATTCAAACTTTA
521 AAACTATTTCATAATCTTTGCAGATTTTTTTTTTAATAATTAGAGAAGGAGGGATTCAAACTTTA
8980630 NCCCT
586 -CCCT
8980635 TTTCAAAAAATAAAAAAAAAATATCTGTTATCTAGAGCAAGCTAAAATAAGGTACAAGGATCAGA
1 TTTCAAAAAATAAAAAAAAAATATCTGTTATCTAGAGCAAGCTAAAATAAGGTACAAGGATCAGA
8980700 AAAATGACGAGGGAGTTGGTAATTCTTGGTGGCAGTGTCCCGAGAGGGGAAGCAGGGGTCTCTGG
66 AAAATGACGAGGGAGTTGGTAATTCTTGGTGGCAGTGTCCCGAGAGGGGAAGCAGGGGTCTCTGG
8980765 TGGCCTGTTCTTGCTTTGCATGATTGTTTTCTCCCTCTCAATTATCGCAATGGTCATCTTCGCTT
131 TGGCCTGTTCTTGCTTTGCATGATTGTTTTCTCCCTCTCAATTATCGCAATGGTCATCTTCGCTT
8980830 GTGGCGATGACAACTCTGAAAAGCCTCGCCGGAATCATGCTGCAGGTGGTTTTTGGGCGGGCGAT
196 GTGGCGATGACAACTCTGAAAAGCCTCGCCGGAATCATGCTGCAGGTGGTTTTTGGGCGGGCGAT
8980895 GGCGGCGGAGGCGGAGGCGATGGTGGTTGTGGGGGAGGTGGCGGTGGAGGTTGTGGGGGCGGTGG
261 GGCGGCGGAGGCGGAGGCGATGGTGGTTGTGGGGGAGGTGGCGGTGGAGGTTGTGGGGGCGGTGG
8980960 CGGTTGCTGAGGATATCTGAATTTATGTGCGTCATTGATTAATTTCAACAGCAACGATTAATAAC
326 CGGTTGCTGAGGATATCTGAATTTATGTGCGTCATTGATTAATTTCAACAGCAACGATTAATAAC
8981025 TTTGTAGTTATAACGTCCTGACAAACTTGTTTGTTGTATTTGTATTTTTTATGAGATTTGTTGAT
391 TTTGTAGTTATAACGTCCTGACAAACTTGTTTGTTGTATTTGTATTTTTTATGAGATTTGTTGAT
8981090 AATATATAGTTGCACCATATCCATGTTCATGTCTTTGTAACCATGATTAAATATAGTCAGGGGTT
456 AATATATAGTTGCACCATATCCATGTTCATGTCTTTGTAACCATGATTAAATATAGTCAGGGGTT
8981155 AAACTATTTCATAATCTTTGCAGATTTTTTTTTTAATAATTAGAGAAGGAGGGATTCAAACTTTA
521 AAACTATTTCATAATCTTTGCAGATTTTTTTTTTAATAATTAGAGAAGGAGGGATTCAAACTTTA
8981220 C
586 C
8981221 TTTTTAAATA
Statistics
Matches: 586, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
589 1 0.00
590 585 1.00
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (589 bp):
TTTCAAAAAATAAAAAAAAAATATCTGTTATCTAGAGCAAGCTAAAATAAGGTACAAGGATCAGA
AAAATGACGAGGGAGTTGGTAATTCTTGGTGGCAGTGTCCCGAGAGGGGAAGCAGGGGTCTCTGG
TGGCCTGTTCTTGCTTTGCATGATTGTTTTCTCCCTCTCAATTATCGCAATGGTCATCTTCGCTT
GTGGCGATGACAACTCTGAAAAGCCTCGCCGGAATCATGCTGCAGGTGGTTTTTGGGCGGGCGAT
GGCGGCGGAGGCGGAGGCGATGGTGGTTGTGGGGGAGGTGGCGGTGGAGGTTGTGGGGGCGGTGG
CGGTTGCTGAGGATATCTGAATTTATGTGCGTCATTGATTAATTTCAACAGCAACGATTAATAAC
TTTGTAGTTATAACGTCCTGACAAACTTGTTTGTTGTATTTGTATTTTTTATGAGATTTGTTGAT
AATATATAGTTGCACCATATCCATGTTCATGTCTTTGTAACCATGATTAAATATAGTCAGGGGTT
AAACTATTTCATAATCTTTGCAGATTTTTTTTTTAATAATTAGAGAAGGAGGGATTCAAACTTTA
CCCT
Found at i:8986235 original size:6 final size:6
Alignment explanation
Indices: 8986224--8986367 Score: 83
Period size: 6 Copynumber: 24.0 Consensus size: 6
8986214 TTTTTGGGCG
* * * * * *
8986224 GGCGGT GGCGGT GGAGGTT GGTGG- GGGGGA GGCGGT GGCGGC GGCGGC
1 GGCGGT GGCGGT GGCGG-T GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT
* * * * * * * * * *
8986272 GGAGGT TGTGGG GGCGGA GGCGGT GGTGGT TGTGGG GGAGGT GGCGGT
1 GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT
* * * * *
8986320 GGAGGT TGTGGG GGAGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT
1 GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT GGCGGT
8986368 TGCTGAGGAT
Statistics
Matches: 106, Mismatches: 30, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
5 4 0.04
6 97 0.92
7 5 0.05
ACGTcount: A:0.05, C:0.10, G:0.67, T:0.17
Consensus pattern (6 bp):
GGCGGT
Found at i:8986293 original size:24 final size:24
Alignment explanation
Indices: 8986266--8986345 Score: 124
Period size: 24 Copynumber: 3.3 Consensus size: 24
8986256 CGGTGGCGGC
* * *
8986266 GGCGGCGGAGGTTGTGGGGGCGGA
1 GGCGGTGGAGGTTGTGGGGGAGGT
*
8986290 GGCGGTGGTGGTTGTGGGGGAGGT
1 GGCGGTGGAGGTTGTGGGGGAGGT
8986314 GGCGGTGGAGGTTGTGGGGGAGGT
1 GGCGGTGGAGGTTGTGGGGGAGGT
8986338 GGCGGTGG
1 GGCGGTGG
8986346 CGGTGGCGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.06, C:0.07, G:0.68, T:0.19
Consensus pattern (24 bp):
GGCGGTGGAGGTTGTGGGGGAGGT
Found at i:8986313 original size:36 final size:36
Alignment explanation
Indices: 8986224--8986297 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
8986214 TTTTTGGGCG
* *
8986224 GGCGGTGGCGGTGGAGGTTGGTGGGGGGGAGGCGGT
1 GGCGGCGGCGGCGGAGGTTGGTGGGGGGGAGGCGGT
8986260 GGCGGCGGCGGCGGAGGTT-GTGGGGGCGGAGGCGGT
1 GGCGGCGGCGGCGGAGGTTGGTGGGGG-GGAGGCGGT
8986296 GG
1 GG
8986298 TGGTTGTGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 7 0.20
36 28 0.80
ACGTcount: A:0.05, C:0.12, G:0.69, T:0.14
Consensus pattern (36 bp):
GGCGGCGGCGGCGGAGGTTGGTGGGGGGGAGGCGGT
Found at i:8990835 original size:21 final size:22
Alignment explanation
Indices: 8990802--8990845 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
8990792 CCATAATCAT
8990802 GGTGCGGGTGGTGGAGGTTGTG
1 GGTGCGGGTGGTGGAGGTTGTG
*
8990824 GGTGTGGG-GGTGGAGGTTGTG
1 GGTGCGGGTGGTGGAGGTTGTG
8990845 G
1 G
8990846 AGGCTGTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.05, C:0.02, G:0.66, T:0.27
Consensus pattern (22 bp):
GGTGCGGGTGGTGGAGGTTGTG
Found at i:8990874 original size:21 final size:21
Alignment explanation
Indices: 8990845--8990899 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
8990835 GGAGGTTGTG
* *
8990845 GAGGCTGTGGGGGCTGAGGTC
1 GAGGTTGTGGGGGCGGAGGTC
* * *
8990866 GAGGTTGTGGAGGCGGGGGTG
1 GAGGTTGTGGGGGCGGAGGTC
8990887 GAGGTTGTGGGGG
1 GAGGTTGTGGGGG
8990900 TGGCAGCGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.09, C:0.07, G:0.64, T:0.20
Consensus pattern (21 bp):
GAGGTTGTGGGGGCGGAGGTC
Found at i:8994084 original size:12 final size:12
Alignment explanation
Indices: 8994062--8994138 Score: 70
Period size: 12 Copynumber: 6.4 Consensus size: 12
8994052 CTTGCGAAGC
8994062 TTATT-TTTATT
1 TTATTATTTATT
8994073 TTATTATTTATT
1 TTATTATTTATT
*
8994085 ATAATTATATTA-T
1 -TTATTAT-TTATT
8994098 TTATTTATTTATT
1 TTA-TTATTTATT
*
8994111 TTGTTATTTATT
1 TTATTATTTATT
* *
8994123 TTTTTATCT-TT
1 TTATTATTTATT
8994134 TTATT
1 TTATT
8994139 CTAAGTTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
11 11 0.20
12 27 0.49
13 14 0.25
14 3 0.05
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.74
Consensus pattern (12 bp):
TTATTATTTATT
Found at i:8994101 original size:4 final size:4
Alignment explanation
Indices: 8994067--8994138 Score: 60
Period size: 4 Copynumber: 17.5 Consensus size: 4
8994057 GAAGCTTATT
*
8994067 TTTA TTT- TATTA TTTA TTATA ATTA TATTA TTTA TTTA TTTA TTT- TGTTA
1 TTTA TTTA T-TTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA T-TTA
*
8994117 TTTA TTTT TTTA TCTT- TTTA TT
1 TTTA TTTA TTTA T-TTA TTTA TT
8994139 CTAAGTTTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
3 4 0.07
4 41 0.73
5 11 0.20
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:8996383 original size:27 final size:25
Alignment explanation
Indices: 8996341--8996391 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8996331 ATTATGTTCA
*
8996341 AAAAAAGTTATTACATGTCATGTTG
1 AAAAAAGTTATTACATGCCATGTTG
*
8996366 AAAAAAGTTGTTACACATGCCATGTT
1 AAAAAAGTTATT--ACATGCCATGTT
8996392 TAAGGTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 11 0.50
27 11 0.50
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (25 bp):
AAAAAAGTTATTACATGCCATGTTG
Found at i:8998477 original size:41 final size:36
Alignment explanation
Indices: 8998432--8998531 Score: 107
Period size: 33 Copynumber: 2.7 Consensus size: 36
8998422 CATCTAGTAT
**
8998432 CCAATTCAAATATAATTATCCAATATAAAGTTGGGGTAACA
1 CCAATTCAAATATAATTATCCAATAT---G-T-CAGTAACA
*
8998473 CCAATTCAAATATAACTAT-C--TATGTCAGTAACA
1 CCAATTCAAATATAATTATCCAATATGTCAGTAACA
8998506 CCAATTCAAATATAATTATCCAATAT
1 CCAATTCAAATATAATTATCCAATAT
8998532 TAACGCAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
33 24 0.46
34 2 0.04
35 1 0.02
36 3 0.06
38 3 0.06
40 1 0.02
41 18 0.35
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (36 bp):
CCAATTCAAATATAATTATCCAATATGTCAGTAACA
Found at i:9008887 original size:3 final size:3
Alignment explanation
Indices: 9008879--9008906 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9008869 GTTAATTTTG
9008879 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9008907 GCATTCATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:9015007 original size:2 final size:2
Alignment explanation
Indices: 9015000--9015027 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9014990 ATAAACTAAC
9015000 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9015028 TAATGTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9016179 original size:18 final size:18
Alignment explanation
Indices: 9016156--9016195 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
9016146 AGTTTCATAA
*
9016156 ATAATTTATAAGTAACAC
1 ATAATTTATAAATAACAC
*
9016174 ATAATTTATAAATAACTC
1 ATAATTTATAAATAACAC
9016192 ATAA
1 ATAA
9016196 ATTAACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAATTTATAAATAACAC
Found at i:9018778 original size:51 final size:50
Alignment explanation
Indices: 9018507--9018778 Score: 388
Period size: 51 Copynumber: 5.4 Consensus size: 50
9018497 CACAAACTTG
* * * * *
9018507 GACTTAGTCTTGATCACGAACTTGCTTGATTTTCACGTCAAGGGTCTTAAT
1 GACTTAGTCTTGATCACGAAC-TACTTGATCTTCGCGTCAAGGGTCTTCAC
*
9018558 GACTTAGTCTTGATCACGAAC-ACTTGATCTTCGCTTCAAGGGTCTTCAC
1 GACTTAGTCTTGATCACGAACTACTTGATCTTCGCGTCAAGGGTCTTCAC
* * *
9018607 GACTTAGTCTTGATCACGAATGTGCTTGAACTTCGCGTCAAGGGTCTTCAC
1 GACTTAGTCTTGATCACGAA-CTACTTGATCTTCGCGTCAAGGGTCTTCAC
*
9018658 GACTTAGTCTTGATCACGAAC-ACTTGATCTTCGCTTCAAGGGTCTTCAC
1 GACTTAGTCTTGATCACGAACTACTTGATCTTCGCGTCAAGGGTCTTCAC
9018707 GACTTAGTCTTGATCACGAACGTACTTGATCTTCGCGTCAAGGGTC-TCAAC
1 GACTTAGTCTTGATCACGAAC-TACTTGATCTTCGCGTCAAGGGTCTTC-AC
*
9018758 GACTTATTCTTGATCACGAAC
1 GACTTAGTCTTGATCACGAAC
9018779 ACCGTATCTT
Statistics
Matches: 200, Mismatches: 16, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
49 88 0.44
50 2 0.01
51 110 0.55
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (50 bp):
GACTTAGTCTTGATCACGAACTACTTGATCTTCGCGTCAAGGGTCTTCAC
Found at i:9018788 original size:100 final size:100
Alignment explanation
Indices: 9018507--9018780 Score: 451
Period size: 100 Copynumber: 2.7 Consensus size: 100
9018497 CACAAACTTG
* * * * *
9018507 GACTTAGTCTTGATCACGAACTTGCTTGATTTTCACGTCAAGGGTCTTAATGACTTAGTCTTGAT
1 GACTTAGTCTTGATCACGAACGTGCTTGATCTTCGCGTCAAGGGTCTCAACGACTTAGTCTTGAT
9018572 CACGAACACTTGATCTTCGCTTCAAGGGTCTTCAC
66 CACGAACACTTGATCTTCGCTTCAAGGGTCTTCAC
* *
9018607 GACTTAGTCTTGATCACGAATGTGCTTGAACTTCGCGTCAAGGGTCTTC-ACGACTTAGTCTTGA
1 GACTTAGTCTTGATCACGAACGTGCTTGATCTTCGCGTCAAGGGTC-TCAACGACTTAGTCTTGA
9018671 TCACGAACACTTGATCTTCGCTTCAAGGGTCTTCAC
65 TCACGAACACTTGATCTTCGCTTCAAGGGTCTTCAC
* *
9018707 GACTTAGTCTTGATCACGAACGTACTTGATCTTCGCGTCAAGGGTCTCAACGACTTATTCTTGAT
1 GACTTAGTCTTGATCACGAACGTGCTTGATCTTCGCGTCAAGGGTCTCAACGACTTAGTCTTGAT
9018772 CACGAACAC
66 CACGAACAC
9018781 CGTATCTTGA
Statistics
Matches: 161, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
99 2 0.01
100 158 0.98
101 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (100 bp):
GACTTAGTCTTGATCACGAACGTGCTTGATCTTCGCGTCAAGGGTCTCAACGACTTAGTCTTGAT
CACGAACACTTGATCTTCGCTTCAAGGGTCTTCAC
Found at i:9018841 original size:23 final size:25
Alignment explanation
Indices: 9018783--9018848 Score: 102
Period size: 25 Copynumber: 2.7 Consensus size: 25
9018773 ACGAACACCG
9018783 TATCTTGATCACGAACTTCGCTTGA
1 TATCTTGATCACGAACTTCGCTTGA
9018808 TATCTTGATCACGAACTTCG-TTG-
1 TATCTTGATCACGAACTTCGCTTGA
9018831 T-TGCTTGATCACGAACTT
1 TAT-CTTGATCACGAACTT
9018849 TGTATAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
22 1 0.03
23 16 0.40
24 3 0.08
25 20 0.50
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (25 bp):
TATCTTGATCACGAACTTCGCTTGA
Found at i:9025190 original size:25 final size:25
Alignment explanation
Indices: 9025157--9025230 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
9025147 GAAGGGGGAA
9025157 ATCTTGGGTGAGAGAGC-AAAAAGAG
1 ATCTTGGGTGAGAGAGCAAAAAAG-G
9025182 ATCTTGGGTGAGAGAGCAAAAAAGG
1 ATCTTGGGTGAGAGAGCAAAAAAGG
*
9025207 ATCTTGGGTGAGAAAGCAAAAAAG
1 ATCTTGGGTGAGAGAGCAAAAAAG
9025231 AAACGGGTGG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 41 0.87
26 6 0.13
ACGTcount: A:0.42, C:0.08, G:0.34, T:0.16
Consensus pattern (25 bp):
ATCTTGGGTGAGAGAGCAAAAAAGG
Found at i:9025238 original size:23 final size:24
Alignment explanation
Indices: 9025161--9025239 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 24
9025151 GGGGAAATCT
* *
9025161 TGGGTGAGAGAGC-AAAAAGAGATC
1 TGGGTGAGAAAGCAAAAAAGA-AAC
* * *
9025185 TTGGGTGAGAGAGCAAAAAAGGATC
1 -TGGGTGAGAAAGCAAAAAAGAAAC
9025210 TTGGGTGAGAAAGCAAAAAAGAAAC
1 -TGGGTGAGAAAGCAAAAAAGAAAC
9025235 -GGGTG
1 TGGGTG
9025240 GAGAGAAAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.10
25 38 0.78
26 6 0.12
ACGTcount: A:0.42, C:0.08, G:0.37, T:0.14
Consensus pattern (24 bp):
TGGGTGAGAAAGCAAAAAAGAAAC
Found at i:9033659 original size:22 final size:19
Alignment explanation
Indices: 9033625--9033667 Score: 50
Period size: 22 Copynumber: 2.1 Consensus size: 19
9033615 CACTGCTATA
*
9033625 TTGTGCATGTTTCTGCTTTGC
1 TTGTGCATATTTCT--TTTGC
9033646 TTGTGGCATATTTCTTTTGC
1 TTGT-GCATATTTCTTTTGC
9033666 TT
1 TT
9033668 AAGCAAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 4 0.20
22 9 0.45
ACGTcount: A:0.07, C:0.16, G:0.21, T:0.56
Consensus pattern (19 bp):
TTGTGCATATTTCTTTTGC
Found at i:9035023 original size:12 final size:12
Alignment explanation
Indices: 9035006--9035030 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9034996 TTATCTCAAG
9035006 AAAGAAAGAAAA
1 AAAGAAAGAAAA
9035018 AAAGAAAGAAAA
1 AAAGAAAGAAAA
9035030 A
1 A
9035031 GAACAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAGAAAGAAAA
Found at i:9044661 original size:25 final size:24
Alignment explanation
Indices: 9044633--9044692 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
9044623 TAATTATGTA
* * *
9044633 TAATATTTTAGTAATTTTATTTTTT
1 TAATATTTTAAT-ATTGTACTTTTT
*
9044658 TAATATTTAAATATTGTACTTTTT
1 TAATATTTTAATATTGTACTTTTT
*
9044682 TATTATTTTAA
1 TAATATTTTAA
9044693 AAAATAAAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 19 0.66
25 10 0.34
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (24 bp):
TAATATTTTAATATTGTACTTTTT
Found at i:9057818 original size:26 final size:28
Alignment explanation
Indices: 9057761--9057819 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
9057751 TTTGATCAAT
9057761 AATAAAAATTAATTAAATATATTTAAAA
1 AATAAAAATTAATTAAATATATTTAAAA
* *
9057789 AATAAAAATTTATTTAAT-T-TTTAAAA
1 AATAAAAATTAATTAAATATATTTAAAA
9057815 AATAA
1 AATAA
9057820 TTCAACAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 12 0.41
27 1 0.03
28 16 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
AATAAAAATTAATTAAATATATTTAAAA
Found at i:9062395 original size:15 final size:17
Alignment explanation
Indices: 9062370--9062402 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9062360 TATGTTAACA
9062370 TTATAAAAATTA-TAAT
1 TTATAAAAATTATTAAT
9062386 TTAT-AAAATTATTAAT
1 TTATAAAAATTATTAAT
9062402 T
1 T
9062403 GTAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTATAAAAATTATTAAT
Found at i:9062864 original size:16 final size:17
Alignment explanation
Indices: 9062840--9062875 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
9062830 TATTTTGTGT
9062840 TAACATTATAAAAATTA
1 TAACATTATAAAAATTA
9062857 TAAC-TTATAAAAATTA
1 TAACATTATAAAAATTA
9062873 TAA
1 TAA
9062876 TTTTGGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
TAACATTATAAAAATTA
Found at i:9062964 original size:40 final size:40
Alignment explanation
Indices: 9062881--9063016 Score: 182
Period size: 40 Copynumber: 3.4 Consensus size: 40
9062871 TATAATTTTG
* * * *
9062881 GTTATTTAAGTTTATGTTATTTGTTTGGATCTTTGTGTTTA
1 GTTATTTAAGTTTATGTT-GTTATTTGGATATTTATGTTTA
*
9062922 GTTATTTAAGTTTATGTTGTTATTTGGATATTTATGTATA
1 GTTATTTAAGTTTATGTTGTTATTTGGATATTTATGTTTA
* * * *
9062962 GTTATTTAAGTTTATATCGTTATATGGATATTTATTTTTA
1 GTTATTTAAGTTTATGTTGTTATTTGGATATTTATGTTTA
9063002 GTTATTTAAGTTTAT
1 GTTATTTAAGTTTAT
9063017 ATTTAAGATC
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 67 0.79
41 18 0.21
ACGTcount: A:0.24, C:0.01, G:0.16, T:0.59
Consensus pattern (40 bp):
GTTATTTAAGTTTATGTTGTTATTTGGATATTTATGTTTA
Found at i:9063032 original size:35 final size:37
Alignment explanation
Indices: 9062918--9063055 Score: 129
Period size: 40 Copynumber: 3.6 Consensus size: 37
9062908 GATCTTTGTG
* * *
9062918 TTTAGTTATTTAAGTTTATGTTGTTATTTGGATATTTATG
1 TTTAGTTATTTAAGTTTAT-AT-TTA-TAGGATATTTATT
*
9062958 TATAGTTATTTAAGTTTATATCGTTATATGGATATTTATT
1 TTTAGTTATTTAAGTTTATAT--TTATA-GGATATTTATT
*
9062998 TTTAGTTATTTAAGTTTATATTTA-A-GATCTTTATT
1 TTTAGTTATTTAAGTTTATATTTATAGGATATTTATT
* *
9063033 TTT-GATTATTTAAATTTAAATTT
1 TTTAG-TTATTTAAGTTTATATTT
9063056 TATTATTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
34 1 0.01
35 28 0.32
37 1 0.01
38 3 0.03
39 2 0.02
40 52 0.60
ACGTcount: A:0.28, C:0.01, G:0.12, T:0.59
Consensus pattern (37 bp):
TTTAGTTATTTAAGTTTATATTTATAGGATATTTATT
Found at i:9063064 original size:7 final size:7
Alignment explanation
Indices: 9063054--9063082 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
9063044 AAATTTAAAT
9063054 TTTATTA
1 TTTATTA
9063061 TTTATTA
1 TTTATTA
9063068 TTTATTA
1 TTTATTA
9063075 TTT-TTA
1 TTTATTA
9063081 TT
1 TT
9063083 AATTTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTATTA
Found at i:9063067 original size:27 final size:29
Alignment explanation
Indices: 9063012--9063071 Score: 81
Period size: 27 Copynumber: 2.1 Consensus size: 29
9063002 GTTATTTAAG
*
9063012 TTTATATTTAAGATCTTTATTTTTGATTA
1 TTTAAATTTAAGATCTTTATTTTTGATTA
9063041 TTTAAATTTAA-AT-TTTATTATTT-ATTA
1 TTTAAATTTAAGATCTTTATT-TTTGATTA
9063068 TTTA
1 TTTA
9063072 TTATTTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 14 0.48
28 5 0.17
29 10 0.34
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (29 bp):
TTTAAATTTAAGATCTTTATTTTTGATTA
Found at i:9065226 original size:63 final size:62
Alignment explanation
Indices: 9065113--9065232 Score: 145
Period size: 63 Copynumber: 1.9 Consensus size: 62
9065103 AATTTTTATA
* *
9065113 TTTTTATAACTTATTTTTACTTTTAAAATTTTTATAATTTCGCCTTTACAAAAATTTAAAAT
1 TTTTTATAACATATTTTTACTTTTAAAATTTTTATAATTTCGCCTCTACAAAAATTTAAAAT
* * * *
9065175 TTTTTTTAACATATTTTTATTTTTCTAAAA-TTTTATAATTTTC-TCTCTACAATAATTT
1 TTTTTATAACATATTTTTA-CTTT-TAAAATTTTTATAA-TTTCGCCTCTACAAAAATTT
9065233 TTTGTTTAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
62 17 0.35
63 23 0.47
64 9 0.18
ACGTcount: A:0.33, C:0.10, G:0.01, T:0.57
Consensus pattern (62 bp):
TTTTTATAACATATTTTTACTTTTAAAATTTTTATAATTTCGCCTCTACAAAAATTTAAAAT
Found at i:9065327 original size:71 final size:71
Alignment explanation
Indices: 9065202--9065333 Score: 210
Period size: 71 Copynumber: 1.9 Consensus size: 71
9065192 TATTTTTCTA
* *
9065202 AAATTTTATAATTTTCTCTCTACAATAATTTTTTGTTTAGTGAAATACCACACAATAATTAGTCA
1 AAATTTTATAATTTTATCTCTACAATAATTTTTTGTTTAGTGAAATACCACACAACAATTAGTCA
9065267 ACAATT
66 ACAATT
* ***
9065273 AAATTTTATAATTTTATCTCTACAATAGTTTTTTGTTTAGTGAAATATTGCACAACAATTA
1 AAATTTTATAATTTTATCTCTACAATAATTTTTTGTTTAGTGAAATACCACACAACAATTA
9065334 ATTTTAAAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 55 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (71 bp):
AAATTTTATAATTTTATCTCTACAATAATTTTTTGTTTAGTGAAATACCACACAACAATTAGTCA
ACAATT
Found at i:9068301 original size:18 final size:18
Alignment explanation
Indices: 9068278--9068325 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
9068268 TTTATGAATG
* *
9068278 ATAATTATTTATAATTCT
1 ATAATTATTAATAATTAT
* *
9068296 ATAATTAGTAATATTTAT
1 ATAATTATTAATAATTAT
9068314 ATAATTA-TAATA
1 ATAATTATTAATA
9068326 CACAATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATAATTATTAATAATTAT
Found at i:9083388 original size:2 final size:2
Alignment explanation
Indices: 9083381--9083412 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9083371 CCCACCCACA
9083381 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9083413 GTGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9103936 original size:2 final size:2
Alignment explanation
Indices: 9103929--9103958 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9103919 GGAAATTGAA
9103929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9103959 CCATATGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9106752 original size:23 final size:23
Alignment explanation
Indices: 9106707--9106753 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
9106697 CCCCTTCAAG
* *
9106707 TTTAATATTTAGTAATTTTATAT
1 TTTAATATTTAATAATTTAATAT
9106730 TTTAATATTTAAATAA-TTAATAT
1 TTTAATATTT-AATAATTTAATAT
9106753 T
1 T
9106754 AAAATATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTAATATTTAATAATTTAATAT
Found at i:9114884 original size:27 final size:26
Alignment explanation
Indices: 9114861--9114915 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
9114851 TTCTTTTTTG
9114861 AATATTTTAAAATTTATATTTTTTAAT
1 AATA-TTTAAAATTTATATTTTTTAAT
* *
9114888 AATATTTAATATTTTTA-TTTTTAAT
1 AATATTTAAAATTTATATTTTTTAAT
9114913 AAT
1 AAT
9114916 TTTTTATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 11 0.42
26 11 0.42
27 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
AATATTTAAAATTTATATTTTTTAAT
Found at i:9114914 original size:25 final size:27
Alignment explanation
Indices: 9114861--9114921 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
9114851 TTCTTTTTTG
9114861 AATATTTTAAAATTTATATTTTTTAAT
1 AATATTTTAAAATTTATATTTTTTAAT
* *
9114888 AATA-TTTAATATTTTTA-TTTTTAAT
1 AATATTTTAAAATTTATATTTTTTAAT
*
9114913 AATTTTTTA
1 AATATTTTA
9114922 TACTTTATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 11 0.37
26 15 0.50
27 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
AATATTTTAAAATTTATATTTTTTAAT
Found at i:9115383 original size:33 final size:33
Alignment explanation
Indices: 9115335--9115417 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
9115325 TTGTGTCGCG
* * *
9115335 TGATATTGATATGACATGTTAATATATCATAAT
1 TGATAATGATGTGACATGTTAACATATCATAAT
* * *
9115368 TGATAATGATGTGACAGGTTGACATATCGTAAT
1 TGATAATGATGTGACATGTTAACATATCATAAT
* *
9115401 TGATGATGACGTGACAT
1 TGATAATGATGTGACAT
9115418 ACTAATTTGG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.36
Consensus pattern (33 bp):
TGATAATGATGTGACATGTTAACATATCATAAT
Found at i:9117737 original size:27 final size:27
Alignment explanation
Indices: 9117666--9117766 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
9117656 TAATCACTAT
* *
9117666 TTTATTCACCAGAGATGAATGAATACC
1 TTTATCCACCAGAGATGGATGAATACC
*
9117693 TTTATCCACTAGAGATGGATGAATACC
1 TTTATCCACCAGAGATGGATGAATACC
* * **
9117720 TTTATCCACCAAAAATGGATGGGTACC
1 TTTATCCACCAGAGATGGATGAATACC
* **
9117747 TTTATTCATTAGAGATGGAT
1 TTTATCCACCAGAGATGGAT
9117767 TTCAATAATT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (27 bp):
TTTATCCACCAGAGATGGATGAATACC
Found at i:9118391 original size:27 final size:27
Alignment explanation
Indices: 9118357--9118429 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
9118347 TTCTAATGGC
* *
9118357 TAAAGGTATCTATTCACTTTTGCTAGA
1 TAAAGGTATCCATTCACTTTTGATAGA
* * * * *
9118384 TAAGGGTATCCATCCAATTTTTATAGG
1 TAAAGGTATCCATTCACTTTTGATAGA
9118411 TAAAGGTATCCATTCACTT
1 TAAAGGTATCCATTCACTT
9118430 CAAGATTGAT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.38
Consensus pattern (27 bp):
TAAAGGTATCCATTCACTTTTGATAGA
Found at i:9118638 original size:27 final size:26
Alignment explanation
Indices: 9118587--9118834 Score: 160
Period size: 27 Copynumber: 9.2 Consensus size: 26
9118577 TCTAGTGAGT
* *
9118587 TAAAGTATCCATGC-ACCTCTAGTGGG
1 TAAAGTATCCAT-CTACTTCTGGTGGG
*
9118613 TAGAAGTATCCATCTACTTCTGGTGGC
1 TA-AAGTATCCATCTACTTCTGGTGGG
* * * *
9118640 TAAAGGTATCCAT-TCACTTTTGCTAGA
1 TAAA-GTATCCATCT-ACTTCTGGTGGG
* * ** *
9118667 TAAAGGTATCCATCCAATTCTTATGGA
1 TAAA-GTATCCATCTACTTCTGGTGGG
* ** *
9118694 TAAAGGTATCCATCTAATTCTTATAGG
1 TAAA-GTATCCATCTACTTCTGGTGGG
*
9118721 TAAAGGTATCCAT-TCACTTCTGGTAGG
1 TAAA-GTATCCATCT-ACTTCTGGTGGG
* * *
9118748 TAAAGCTATCCATCCACTTATGGTAGG
1 TAAAG-TATCCATCTACTTCTGGTGGG
* * *
9118775 TAAAAGTATCCATCAACTTCTAGTGGA
1 T-AAAGTATCCATCTACTTCTGGTGGG
*
9118802 TAAAGTTATCCATCTACTTCTGGTGGA
1 TAAAG-TATCCATCTACTTCTGGTGGG
9118829 TAAAGT
1 TAAAGT
9118835 TATAGTAAAC
Statistics
Matches: 184, Mismatches: 28, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
26 13 0.07
27 167 0.91
28 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (26 bp):
TAAAGTATCCATCTACTTCTGGTGGG
Found at i:9118661 original size:283 final size:285
Alignment explanation
Indices: 9118150--9118706 Score: 816
Period size: 283 Copynumber: 2.0 Consensus size: 285
9118140 TGTAATGTTC
* *
9118150 GATAAAGTTCAACAAGATATTTCGACATACGATACGTATGTGACTAATGGCCTTTCATGCCACAT
1 GATAAAGTTCAACAAGATATTTCGACATACGATACGTATATGACAAATGGCCTTTCATGCCACAT
* * * * *
9118215 CGATGACAGATATTTTCTGTATTCTTTTTATTCTATCTATTTTTATCTTTTTCTTATATCTCTTC
66 CAATAACAGACATTTTCTGTATTCCTTTTATTCTATCTACTTTTATC--TTTCTTATATCTCTTC
* ** * * *
9118280 ACTACCCTTTTATATCTGGTGAGTAAAAGTATCCATCCACCTCTAGTGGGTGGAGGTATCCATCT
129 ACTACCCATCCATATCTAGTGAGTAAAAGTATCCATCCACCTCTAGTGGGTAGAAGTATCCATCT
* * *
9118345 ACTTCTAATGGCTAAAGGTATCTATTCACTTTTGCTAGATAAGGGTATCCATCCAATTTTTATAG
194 ACTTCTAATGGCTAAAGGTATCCATTCACTTTTGCTAGATAAAGGTATCCATCCAATTCTTAT-G
9118410 G-TAAAGGTATCCATTCACTTCAAGATT
258 GATAAAGGTATCCATTCACTTCAAGATT
* * *
9118437 GATAAAGTTCAACAAGATGTTTTGACATATGATACGTATATGACAAATGGCCTTTCATGCCACAT
1 GATAAAGTTCAACAAGATATTTCGACATACGATACGTATATGACAAATGGCCTTTCATGCCACAT
* *
9118502 CAATAACATACATTTTCTGTATTCCTTTTATTC-AGTCTACTTTTGTC-TT-TTATATCTCTTCA
66 CAATAACAGACATTTTCTGTATTCCTTTTATTCTA-TCTACTTTTATCTTTCTTATATCTCTTCA
* * *
9118564 CTACTCATCCATATCTAGTGAGTTAAAGTATCCATGCACCTCTAGTGGGTAGAAGTATCCATCTA
130 CTACCCATCCATATCTAGTGAGTAAAAGTATCCATCCACCTCTAGTGGGTAGAAGTATCCATCTA
**
9118629 CTTCTGGTGGCTAAAGGTATCCATTCACTTTTGCTAGATAAAGGTATCCATCCAATTCTTATGGA
195 CTTCTAATGGCTAAAGGTATCCATTCACTTTTGCTAGATAAAGGTATCCATCCAATTCTTATGGA
9118694 TAAAGGTATCCAT
260 TAAAGGTATCCAT
9118707 CTAATTCTTA
Statistics
Matches: 242, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
282 2 0.01
283 139 0.57
284 2 0.01
286 1 0.00
287 98 0.40
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (285 bp):
GATAAAGTTCAACAAGATATTTCGACATACGATACGTATATGACAAATGGCCTTTCATGCCACAT
CAATAACAGACATTTTCTGTATTCCTTTTATTCTATCTACTTTTATCTTTCTTATATCTCTTCAC
TACCCATCCATATCTAGTGAGTAAAAGTATCCATCCACCTCTAGTGGGTAGAAGTATCCATCTAC
TTCTAATGGCTAAAGGTATCCATTCACTTTTGCTAGATAAAGGTATCCATCCAATTCTTATGGAT
AAAGGTATCCATTCACTTCAAGATT
Found at i:9118708 original size:81 final size:79
Alignment explanation
Indices: 9118616--9118833 Score: 228
Period size: 81 Copynumber: 2.7 Consensus size: 79
9118606 TAGTGGGTAG
* * *
9118616 AAGTATCCATCTACTTCTGGTGGCTAAAGGTATCCATTCACTTTTGCTAGATAAAGGTATCCATC
1 AAGTATCCATCTACTTCTAGTGG-TAAAGGTATCCATTCACTTCTGCTAGATAAAGCTATCCATC
9118681 CAATTCTTATGG-A-TAA
65 C-A--CTTATGGTAGTAA
* * * *
9118697 AGGTATCCATCTAATTCTTA-TAGGTAAAGGTATCCATTCACTTCTGGTAGGTAAAGCTATCCAT
1 AAGTATCCATCTACTTC-TAGT-GGTAAAGGTATCCATTCACTTCTGCTAGATAAAGCTATCCAT
9118761 CCACTTATGGTAGGTAA
64 CCACTTATGGTA-GTAA
* * * *
9118778 AAGTATCCATCAACTTCTAGTGGATAAAGTTATCCA-TCTACTTCTGGTGGATAAAG
1 AAGTATCCATCTACTTCTAGTGG-TAAAGGTATCCATTC-ACTTCTGCTAGATAAAG
9118834 TTATAGTAAA
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
78 7 0.06
79 1 0.01
80 7 0.06
81 98 0.84
82 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (79 bp):
AAGTATCCATCTACTTCTAGTGGTAAAGGTATCCATTCACTTCTGCTAGATAAAGCTATCCATCC
ACTTATGGTAGTAA
Found at i:9118815 original size:54 final size:54
Alignment explanation
Indices: 9118577--9118825 Score: 202
Period size: 54 Copynumber: 4.6 Consensus size: 54
9118567 CTCATCCATA
* * * * * * *
9118577 TCTAGTGAGTTAAA-GTATCCATGCACCTCTAGTGGGTAGAAGTATCCATCTACT
1 TCTAGTG-GATAAAGGTATCCATCCACTTCTGGTAGGTAAAAGTATCCATCAACT
* * * * * * *
9118631 TCTGGTGGCTAAAGGTATCCATTCACTTTTGCTAGATAAAGGTATCCATCCAA-T
1 TCTAGTGGATAAAGGTATCCATCCACTTCTGGTAGGTAAAAGTATCCAT-CAACT
* * ** *
9118685 TCTTA-TGGATAAAGGTATCCATCTAATTCTTATAGGTAAAGGTATCCATTC-ACT
1 TC-TAGTGGATAAAGGTATCCATCCACTTCTGGTAGGTAAAAGTATCCA-TCAACT
* * *
9118739 TCTGGTAGG-TAAAGCTATCCATCCACTTATGGTAGGTAAAAGTATCCATCAACT
1 TCTAGT-GGATAAAGGTATCCATCCACTTCTGGTAGGTAAAAGTATCCATCAACT
* *
9118793 TCTAGTGGATAAAGTTATCCATCTACTTCTGGT
1 TCTAGTGGATAAAGGTATCCATCCACTTCTGGT
9118826 GGATAAAGTT
Statistics
Matches: 153, Mismatches: 33, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
53 11 0.07
54 136 0.89
55 6 0.04
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (54 bp):
TCTAGTGGATAAAGGTATCCATCCACTTCTGGTAGGTAAAAGTATCCATCAACT
Found at i:9118837 original size:27 final size:27
Alignment explanation
Indices: 9118618--9118833 Score: 190
Period size: 27 Copynumber: 8.0 Consensus size: 27
9118608 GTGGGTAGAA
*
9118618 GTATCCATCTACTTCTGGTGGCTAAAG
1 GTATCCATCTACTTCTGGTGGATAAAG
* * *
9118645 GTATCCAT-TCACTTTTGCTAGATAAAG
1 GTATCCATCT-ACTTCTGGTGGATAAAG
* * **
9118672 GTATCCATCCAATTCTTATGGATAAAG
1 GTATCCATCTACTTCTGGTGGATAAAG
* **
9118699 GTATCCATCTAATTCTTATAGG-TAAAG
1 GTATCCATCTACTTCTGGT-GGATAAAG
9118726 GTATCCAT-TCACTTCTGGTAGG-TAAAG
1 GTATCCATCT-ACTTCTGGT-GGATAAAG
* * * *
9118753 CTATCCATCCACTTATGGTAGG-TAAAA
1 GTATCCATCTACTTCTGGT-GGATAAAG
* *
9118780 GTATCCATCAACTTCTAGTGGATAAAG
1 GTATCCATCTACTTCTGGTGGATAAAG
*
9118807 TTATCCATCTACTTCTGGTGGATAAAG
1 GTATCCATCTACTTCTGGTGGATAAAG
9118834 TTATAGTAAA
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.03
27 151 0.96
28 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (27 bp):
GTATCCATCTACTTCTGGTGGATAAAG
Found at i:9128264 original size:2 final size:2
Alignment explanation
Indices: 9128257--9128293 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
9128247 ACAATACCCA
9128257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9128294 GGTGAGAANN
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9128395 original size:2 final size:2
Alignment explanation
Indices: 9128388--9128416 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9128378 CACAATACCA
9128388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9128417 AGTGAGAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9131234 original size:11 final size:11
Alignment explanation
Indices: 9131218--9131242 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9131208 TGAGATGATA
9131218 AAAATTTTGTG
1 AAAATTTTGTG
9131229 AAAATTTTGTG
1 AAAATTTTGTG
9131240 AAA
1 AAA
9131243 CTAATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (11 bp):
AAAATTTTGTG
Found at i:9137988 original size:2 final size:2
Alignment explanation
Indices: 9137981--9138045 Score: 73
Period size: 2 Copynumber: 34.0 Consensus size: 2
9137971 AATGTTATGA
* * *
9137981 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT -T GT AT AA AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
9138021 GT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9138046 TTAATTTATA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
1 3 0.05
2 52 0.95
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9138252 original size:215 final size:217
Alignment explanation
Indices: 9138015--9138491 Score: 612
Period size: 215 Copynumber: 2.2 Consensus size: 217
9138005 ATATAATTGT
* **
9138015 ATAAACGTTATATATATATATATATATATATTTAATTTATACATAAGTATTACTATAACTTATAA
1 ATAAA-GTAATATAT-TATATATATATATATTTAATTTATACATAAACATTACTATAACTTATAA
* * *
9138080 TAAATTTTATTAATATGATTACATTTAATAACCTTATTAATTAT-ACCTTAGTTTTTATAACATA
64 TAAACTTTATTAATATAATTACATTTAATAACCTTATTAATTATCACCTTAATTTTTATAACATA
* * * * * *
9138144 CTGTTTATAATTAGTTATTATTTATATAAATTTTGATAT-AA-AACATTA-TA-ACAA-ATAAGT
129 CTGTTTATAATTAATTATTATTTATACAAACTTTGATATAAATAAAAATATTACAAAATATAAGT
9138204 TGTGTAATTAATTTCATATATACATA
194 TGTGTAATTAATTTCATATAT--ATA
* *
9138230 ATAAAGTAATATATTTTATATATACATATATTTAA-TTAGTACATAAACATTACTATAGCTTATA
1 ATAAAGTAATATA--TTATATATATATATATTTAATTTA-TACATAAACATTACTATAACTTATA
* * ** * * *
9138294 ATAGACTTTATTTATATAATTACATTTAATAATTTTATTAGTTATCACTTTAATTTTTATAATAT
63 ATAAACTTTATTAATATAATTACATTTAATAACCTTATTAATTATCACCTTAATTTTTATAACAT
*
9138359 ATTGTTTATAATTAATTATTATTTATACAAACTTTGATATAAAATAAAAATATTACAAAATATAA
128 ACTGTTTATAATTAATTATTATTTATACAAACTTTGATAT-AAATAAAAATATTACAAAATATAA
*
9138424 GTTGTGTTATTAATTTCATATATATA
192 GTTGTGTAATTAATTTCATATATATA
9138450 ATAAAGTAATATATTATATATAT-T-TATTTAATTTATACATAA
1 ATAAAGTAATATATTATATATATATATATTTAATTTATACATAA
9138492 TTTGTATATT
Statistics
Matches: 227, Mismatches: 24, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
214 10 0.04
215 83 0.37
216 67 0.30
217 4 0.02
218 11 0.05
219 5 0.02
220 18 0.08
221 3 0.01
222 26 0.11
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (217 bp):
ATAAAGTAATATATTATATATATATATATTTAATTTATACATAAACATTACTATAACTTATAATA
AACTTTATTAATATAATTACATTTAATAACCTTATTAATTATCACCTTAATTTTTATAACATACT
GTTTATAATTAATTATTATTTATACAAACTTTGATATAAATAAAAATATTACAAAATATAAGTTG
TGTAATTAATTTCATATATATA
Found at i:9138272 original size:17 final size:18
Alignment explanation
Indices: 9138228--9138274 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
9138218 CATATATACA
*
9138228 TAATAAAGTA-ATATATT
1 TAATATAGTACATATATT
*
9138245 TTATATA-TACATATATT
1 TAATATAGTACATATATT
9138262 TAAT-TAGTACATA
1 TAATATAGTACATA
9138275 AACATTACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (18 bp):
TAATATAGTACATATATT
Found at i:9138692 original size:44 final size:43
Alignment explanation
Indices: 9138627--9138754 Score: 132
Period size: 45 Copynumber: 2.9 Consensus size: 43
9138617 ACATGCCATG
9138627 ATGTTACACGTCATGTACAAAACATGTTACACGCCATGGTTAGGA
1 ATGTTACACGTCATGTACAAAACATGTTACACGCCATGGTTA--A
* * * *
9138672 A-GTTACACGTCATGTACAAAAATATGTGACATGTCATGGTTAA
1 ATGTTACACGTCATGTAC-AAAACATGTTACACGCCATGGTTAA
* * * *
9138715 ATTGTTACACGCCATGTAAAAAAACATATTATACGCCATG
1 A-TGTTACACGTCATGT-ACAAAACATGTTACACGCCATG
9138755 TACAAAAACA
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
43 2 0.03
44 16 0.24
45 48 0.72
46 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGTTACACGTCATGTACAAAACATGTTACACGCCATGGTTAA
Found at i:9138725 original size:45 final size:45
Alignment explanation
Indices: 9138627--9138741 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 45
9138617 ACATGCCATG
*
9138627 ATGTTACACGTCATGTAC-AAAACATGTTACACGCCATGGTTAGGA
1 ATGTTACACGTCATGTACAAAAACATGTGACACGCCATGGTTA-GA
* * *
9138672 A-GTTACACGTCATGTACAAAAATATGTGACATGTCATGGTTA-A
1 ATGTTACACGTCATGTACAAAAACATGTGACACGCCATGGTTAGA
* *
9138715 ATTGTTACACGCCATGTAAAAAAACAT
1 A-TGTTACACGTCATGTACAAAAACAT
9138742 ATTATACGCC
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.03
44 16 0.27
45 42 0.70
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (45 bp):
ATGTTACACGTCATGTACAAAAACATGTGACACGCCATGGTTAGA
Found at i:9138774 original size:24 final size:24
Alignment explanation
Indices: 9138721--9138778 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
9138711 TTAAATTGTT
*
9138721 ACACGCCATGTAAAAAAACATATT
1 ACACGCCATGTAAAAAAACATATG
* * *
9138745 ATACGCCATGTACAAAAACATGTG
1 ACACGCCATGTAAAAAAACATATG
9138769 ACACGCCATG
1 ACACGCCATG
9138779 GTTAGGTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (24 bp):
ACACGCCATGTAAAAAAACATATG
Found at i:9138805 original size:45 final size:45
Alignment explanation
Indices: 9138747--9139051 Score: 380
Period size: 45 Copynumber: 6.7 Consensus size: 45
9138737 AACATATTAT
*
9138747 ACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGTTGTTAC
1 ACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGATGTTAC
*
9138792 ACGTCATGTACAAAAACATGTGACACGCCATGGTTAGGATGTTAC
1 ACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGATGTTAC
* * * *
9138837 ACACCATGTACAAAAA-ATGTGTGACATGCCGTGGTTAGGTTGTTAC
1 ACGCCATGTACAAAAACA--TGTGACACGCCATGGTTAGGATGTTAC
* *
9138883 ACGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTAC
1 ACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGATGTTAC
* *
9138928 ACGCCATGTAC-AAAACATGTGACACGCCATAGTTAGGTTGTTAC
1 ACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGATGTTAC
* * * * *** **
9138972 ATGCCATGTACAAAAACATGTTACATGTCATATGCAAAAACATGTTAC
1 ACGCCATGTACAAAAACATGTGACACG-C-CATG-GTTAGGATGTTAC
9139020 ACGCCATGTACAAAAACATGTGACACGCCATG
1 ACGCCATGTACAAAAACATGTGACACGCCATG
9139052 TACAAAAACA
Statistics
Matches: 221, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
44 40 0.18
45 103 0.47
46 43 0.19
47 4 0.02
48 31 0.14
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (45 bp):
ACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGATGTTAC
Found at i:9138820 original size:69 final size:69
Alignment explanation
Indices: 9138676--9138823 Score: 197
Period size: 69 Copynumber: 2.1 Consensus size: 69
9138666 TTAGGAAGTT
* * * *
9138676 ACACGTCATGTACAAAAATATGTGACATGTCATGGTTAAATTGTTACACGCCATGTAAAAAAACA
1 ACACGCCATGTACAAAAACATGTGACACGCCATGGTTAAATTGTTACACGCCATGTAAAAAAACA
*
9138741 TATT
66 TATG
* ** * *
9138745 ATACGCCATGTACAAAAACATGTGACACGCCATGGTTAGGTTGTTACACGTCATGTACAAAAACA
1 ACACGCCATGTACAAAAACATGTGACACGCCATGGTTAAATTGTTACACGCCATGTAAAAAAACA
*
9138810 TGTG
66 TATG
9138814 ACACGCCATG
1 ACACGCCATG
9138824 GTTAGGATGT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (69 bp):
ACACGCCATGTACAAAAACATGTGACACGCCATGGTTAAATTGTTACACGCCATGTAAAAAAACA
TATG
Found at i:9138845 original size:114 final size:114
Alignment explanation
Indices: 9138638--9138853 Score: 328
Period size: 114 Copynumber: 1.9 Consensus size: 114
9138628 TGTTACACGT
* *
9138638 CATGTACAAAACATGTTACACGCCATGGTTAGGAAGTTACACGTCATGTACAAAAATATGTGACA
1 CATGTACAAAACATGTGACACGCCATGGTTAGGAAGTTACACGTCATGTACAAAAACATGTGACA
* * *
9138703 TGTCATGGTTAAATTGTTACACGCCATGTA-AAAAAACATATTATACGC
66 CGCCATGGTTAAATTGTTACACACCATGTACAAAAAACATATTATACGC
**
9138751 CATGTACAAAAACATGTGACACGCCATGGTTAGGTTGTTACACGTCATGTACAAAAACATGTGAC
1 CATGTAC-AAAACATGTGACACGCCATGGTTAGGAAGTTACACGTCATGTACAAAAACATGTGAC
*
9138816 ACGCCATGGTTAGGA-TGTTACACACCATGTACAAAAAA
65 ACGCCATGGTTA-AATTGTTACACACCATGTACAAAAAA
9138854 TGTGTGACAT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
113 7 0.08
114 78 0.85
115 7 0.08
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (114 bp):
CATGTACAAAACATGTGACACGCCATGGTTAGGAAGTTACACGTCATGTACAAAAACATGTGACA
CGCCATGGTTAAATTGTTACACACCATGTACAAAAAACATATTATACGC
Found at i:9138874 original size:91 final size:89
Alignment explanation
Indices: 9138750--9139051 Score: 379
Period size: 91 Copynumber: 3.3 Consensus size: 89
9138740 ATATTATACG
*
9138750 CCATGTACAAAAACATGTGACACGCCATGGTTAGGTTGTTACACGTCATGTACAAAAACATGTGA
1 CCATGTACAAAAA-ATGTGACACGCCATGGTTAGGTTGTTACACGCCATGTACAAAAACATGTGA
9138815 CACGCCATGGTTAGGATGTTACACA
65 CACGCCATGGTTAGGATGTTACACA
* * *
9138840 CCATGTACAAAAAATGTGTGACATGCCGTGGTTAGGTTGTTACACGCCATGTACAAAAACATGTT
1 CCATGTACAAAAAA--TGTGACACGCCATGGTTAGGTTGTTACACGCCATGTACAAAAACATGTG
* *
9138905 ACACGCTATGGTTAGGATGTTACACG
64 ACACGCCATGGTTAGGATGTTACACA
* * * *
9138931 CCATGTACAAAACATGTGACACGCCATAGTTAGGTTGTTACATGCCATGTACAAAAACATGTTAC
1 CCATGTACAAAAAATGTGACACGCCATGGTTAGGTTGTTACACGCCATGTACAAAAACATGTGAC
* * *** ** *
9138996 ATGTCATATGCAAAAACATGTTACACG
66 ACG-C-CATG-GTTAGGATGTTACACA
9139023 CCATGTACAAAAACATGTGACACGCCATG
1 CCATGTACAAAAA-ATGTGACACGCCATG
9139052 TACAAAAACA
Statistics
Matches: 187, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
89 50 0.27
90 14 0.07
91 86 0.46
92 23 0.12
93 14 0.07
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (89 bp):
CCATGTACAAAAAATGTGACACGCCATGGTTAGGTTGTTACACGCCATGTACAAAAACATGTGAC
ACGCCATGGTTAGGATGTTACACA
Found at i:9138904 original size:24 final size:24
Alignment explanation
Indices: 9138877--9139075 Score: 173
Period size: 24 Copynumber: 8.6 Consensus size: 24
9138867 GTGGTTAGGT
9138877 TGTTACACGCCATGTACAAAAACA
1 TGTTACACGCCATGTACAAAAACA
* * **
9138901 TGTTACACGCTATGGT----TAGGA
1 TGTTACACGCCAT-GTACAAAAACA
9138922 TGTTACACGCCATGTAC-AAAACA
1 TGTTACACGCCATGTACAAAAACA
* * ***
9138945 TGTGACACGCCATAGT----TAGGT
1 TGTTACACGCCAT-GTACAAAAACA
*
9138966 TGTTACATGCCATGTACAAAAACA
1 TGTTACACGCCATGTACAAAAACA
* * * *
9138990 TGTTACATGTCATATGCAAAAACA
1 TGTTACACGCCATGTACAAAAACA
9139014 TGTTACACGCCATGTACAAAAACA
1 TGTTACACGCCATGTACAAAAACA
*
9139038 TGTGACACGCCATGTACAAAAACA
1 TGTTACACGCCATGTACAAAAACA
*
9139062 TGTGACACGCCATG
1 TGTTACACGCCATG
9139076 GTTAGGATGT
Statistics
Matches: 139, Mismatches: 27, Indels: 18
0.76 0.15 0.10
Matches are distributed among these distances:
20 4 0.03
21 26 0.19
23 14 0.10
24 93 0.67
25 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (24 bp):
TGTTACACGCCATGTACAAAAACA
Found at i:9139027 original size:48 final size:47
Alignment explanation
Indices: 9138734--9139075 Score: 195
Period size: 45 Copynumber: 7.4 Consensus size: 47
9138724 CGCCATGTAA
* *
9138734 AAAAACATATTATACGCCATGTACAAAAACATGTGACACGCC--ATG
1 AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATATG
*** *** *
9138779 GTTAGGTTGTTACACGTCATGTACAAAAACATGTGACACGCC--ATG
1 AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATATG
*** ** * * *
9138824 GTTAGGATGTTACACACCATGTACAAAAA-ATGTGTGACATGCC--GTG
1 AAAAACATGTTACACGCCATGTACAAAAACA--TGTGACACGCCATATG
*** *** *
9138870 GTTAGGTTGTTACACGCCATGTACAAAAACATGTTACACG-C-TATG
1 AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATATG
*** **
9138915 GTTAGGATGTTACACGCCATGTAC-AAAACATGTGACACGCCATA-G
1 AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATATG
** *** * * * *
9138960 -TTAGGTTGTTACATGCCATGTACAAAAACATGTTACATGTCATATG
1 AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATATG
* *
9139006 CAAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATGTAC
1 -AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATAT-G
*
9139055 AAAAACATGTGACACGCCATG
1 AAAAACATGTTACACGCCATG
9139076 GTTAGGATGT
Statistics
Matches: 248, Mismatches: 38, Indels: 19
0.81 0.12 0.06
Matches are distributed among these distances:
44 37 0.15
45 113 0.46
46 42 0.17
47 1 0.00
48 55 0.22
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (47 bp):
AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATATG
Found at i:9139173 original size:251 final size:250
Alignment explanation
Indices: 9138628--9139294 Score: 853
Period size: 251 Copynumber: 2.7 Consensus size: 250
9138618 CATGCCATGA
* * * *
9138628 TGTTACACGTCATGTAC-AAAACATGTTACACGCCATGGTTAGGAAGTTACACGTCATGTACAAA
1 TGTTACACGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTACACGCCATGTAC-AA
* * * ** * * * *
9138692 AATATGTGACATGTCATGGTTAAATTGTTACACGCCATGTAAAAAAACATATTATACGCCATGTA
65 AACATGTGACATGCCATAGTTAGGTTGTTACACGCCATGT-AAAAAACATGTTACACGTCATATA
* * *** * *
9138757 CAAAAACATGTGACACGCCATGGT---TAGGTTGTTACACGTCATGTACAAAAACATGTGACACG
129 CAAAAACATGTTACACGCCAT-GTAAAAAACATGTAACACGCCATGTACAAAAACATGTGACACG
* ** * *
9138819 CCATGGTTAGGATGTTACACACCATGTACAAAAAATGTGTGACATGCCGTGGTTAGGT
193 CCATGGTTAGGATGTTACACACCATGTACAAAAAACGTGTGACACACCATGGTTAGAT
9138877 TGTTACACGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTACACGCCATGTACAAA
1 TGTTACACGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTACACGCCATGTACAAA
* * * *
9138942 ACATGTGACACGCCATAGTTAGGTTGTTACATGCCATGTACAAAAACATGTTACATGTCATATGC
66 ACATGTGACATGCCATAGTTAGGTTGTTACACGCCATGTA-AAAAACATGTTACACGTCATATAC
*
9139007 AAAAACATGTTACACGCCATGTACAAAAACATGTGACACGCCATGTACAAAAACATGTGACACGC
130 AAAAACATGTTACACGCCATGTA-AAAAACATGTAACACGCCATGTACAAAAACATGTGACACGC
* *** *
9139072 CATGGTTAGGATGTTATATGTCATGTAC-AAAAACGTGTGGCACACCATGGTTAGAT
194 CATGGTTAGGATGTTACACACCATGTACAAAAAACGTGTGACACACCATGGTTAGAT
*
9139128 TGTTACATGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTACACGCCATGTACAAA
1 TGTTACACGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTACACGCCATGTACAAA
* * ***
9139193 ACATGTGACATGCCATAGTTAGGTTGTTACACGCCATG--GATAGGTTGTTACACGTCATATACA
66 ACATGTGACATGCCATAGTTAGGTTGTTACACGCCATGTAAAAAACATGTTACACGTCATATACA
*
9139256 AAAACATGTTACACGCTATGTATAAAAACATGTAACACG
131 AAAACATGTTACACGCCATGTA-AAAAACATGTAACACG
9139295 TTATGGTTAG
Statistics
Matches: 365, Mismatches: 47, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
248 57 0.16
249 88 0.24
250 41 0.11
251 122 0.33
252 57 0.16
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (250 bp):
TGTTACACGCCATGTACAAAAACATGTTACACGCTATGGTTAGGATGTTACACGCCATGTACAAA
ACATGTGACATGCCATAGTTAGGTTGTTACACGCCATGTAAAAAACATGTTACACGTCATATACA
AAAACATGTTACACGCCATGTAAAAAACATGTAACACGCCATGTACAAAAACATGTGACACGCCA
TGGTTAGGATGTTACACACCATGTACAAAAAACGTGTGACACACCATGGTTAGAT
Found at i:9139214 original size:44 final size:45
Alignment explanation
Indices: 9139037--9139230 Score: 248
Period size: 45 Copynumber: 4.3 Consensus size: 45
9139027 GTACAAAAAC
*
9139037 ATGTGACACGCCATGTACAAAAACATGTGACACGCCATGGTTAGG
1 ATGTTACACGCCATGTACAAAAACATGTGACACGCCATGGTTAGG
* * * * * *
9139082 ATGTTATATGTCATGTACAAAAACGTGTGGCACACCATGGTTA-G
1 ATGTTACACGCCATGTACAAAAACATGTGACACGCCATGGTTAGG
* * *
9139126 ATTGTTACATGCCATGTACAAAAACATGTTACACGCTATGGTTAGG
1 A-TGTTACACGCCATGTACAAAAACATGTGACACGCCATGGTTAGG
* *
9139172 ATGTTACACGCCATGTAC-AAAACATGTGACATGCCATAGTTAGG
1 ATGTTACACGCCATGTACAAAAACATGTGACACGCCATGGTTAGG
*
9139216 TTGTTACACGCCATG
1 ATGTTACACGCCATG
9139231 GATAGGTTGT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
44 38 0.30
45 87 0.69
46 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
ATGTTACACGCCATGTACAAAAACATGTGACACGCCATGGTTAGG
Found at i:9139229 original size:21 final size:21
Alignment explanation
Indices: 9139204--9139251 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
9139194 CATGTGACAT
*
9139204 GCCATAGTTAGGTTGTTACAC
1 GCCATAGATAGGTTGTTACAC
*
9139225 GCCATGGATAGGTTGTTACAC
1 GCCATAGATAGGTTGTTACAC
*
9139246 GTCATA
1 GCCATA
9139252 TACAAAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (21 bp):
GCCATAGATAGGTTGTTACAC
Found at i:9139270 original size:24 final size:25
Alignment explanation
Indices: 9139238--9139295 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
9139228 ATGGATAGGT
9139238 TGTTACACGTC-ATATACAAAAACA
1 TGTTACACGTCTATATACAAAAACA
* *
9139262 TGTTACACG-CTATGTATAAAAACA
1 TGTTACACGTCTATATACAAAAACA
*
9139286 TGTAACACGT
1 TGTTACACGT
9139296 TATGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (25 bp):
TGTTACACGTCTATATACAAAAACA
Found at i:9139338 original size:29 final size:29
Alignment explanation
Indices: 9139305--9139365 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
9139295 TTATGGTTAG
* * *
9139305 GTTGTTACATGCCATGTT-GAAAACATATT
1 GTTGTTACACGCCATATTCAAAAACAT-TT
9139334 GTTGTTACACGCCATATTCAAAAACATTT
1 GTTGTTACACGCCATATTCAAAAACATTT
9139363 GTT
1 GTT
9139366 ACACTTTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (29 bp):
GTTGTTACACGCCATATTCAAAAACATTT
Found at i:9142778 original size:102 final size:101
Alignment explanation
Indices: 9142659--9142908 Score: 286
Period size: 102 Copynumber: 2.5 Consensus size: 101
9142649 GCATAACATT
* * * *
9142659 ATTACAGCCAAATTATGAGCAATAAAGCTAGTGGCTGGAATGTGAATAATAAATTATGGTCAAAG
1 ATTACAGCCAAAATATGAGCGATAAAGCTAGCGGCT-GAATGTGAATAATAAACTATGGTCAAAG
* * *
9142724 AATAAGTGATAAAGCTTGTGACCAAAAGAAGAATATC
65 AATAAGCGATAAAGCTTGCGACCAAAAGAAGAATATA
* * * * *
9142761 ATTGCAGCCAAAATATGAGCGGTAAAGCTTGCGGCTGAA-GTAAGAATGATGAACTATGGTCAAA
1 ATTACAGCCAAAATATGAGCGATAAAGCTAGCGGCTGAATGT--GAATAATAAACTATGGTCAAA
* * *
9142825 GAATAAGCGATAAAGCTTGCGACCAATAGTATAATATA
64 GAATAAGCGATAAAGCTTGCGACCAAAAGAAGAATATA
* * ** *
9142863 ATTATAGCTAAAATACAAGCGATAAAGCTAGCGGCTGAATATGAAT
1 ATTACAGCCAAAATATGAGCGATAAAGCTAGCGGCTGAATGTGAAT
9142909 TTTTTTTTAT
Statistics
Matches: 122, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
100 2 0.02
101 7 0.06
102 112 0.92
103 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (101 bp):
ATTACAGCCAAAATATGAGCGATAAAGCTAGCGGCTGAATGTGAATAATAAACTATGGTCAAAGA
ATAAGCGATAAAGCTTGCGACCAAAAGAAGAATATA
Found at i:9143944 original size:13 final size:13
Alignment explanation
Indices: 9143926--9143950 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9143916 TACAAGATAA
9143926 TTAGAGAGAGAAT
1 TTAGAGAGAGAAT
9143939 TTAGAGAGAGAA
1 TTAGAGAGAGAA
9143951 GCTCTCAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (13 bp):
TTAGAGAGAGAAT
Found at i:9144208 original size:29 final size:29
Alignment explanation
Indices: 9144170--9144239 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
9144160 AAAAAAGAGG
* *
9144170 TGTACAAGAATAAGTACAAGAGAAGAAGC
1 TGTACAAGAATAAGTACAAAAGAAAAAGC
* *
9144199 TGTACGAGAATAGGTACAAAAGAAAAAGC
1 TGTACAAGAATAAGTACAAAAGAAAAAGC
*
9144228 TGTACATGAATA
1 TGTACAAGAATA
9144240 GGTATACGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.50, C:0.10, G:0.23, T:0.17
Consensus pattern (29 bp):
TGTACAAGAATAAGTACAAAAGAAAAAGC
Found at i:9144514 original size:35 final size:35
Alignment explanation
Indices: 9144475--9144598 Score: 131
Period size: 35 Copynumber: 3.5 Consensus size: 35
9144465 TTCCATATGG
* * * *
9144475 AGTAGTGCTTTACTTATTCTAGTTCTTCTGCTTTA
1 AGTAGTGCTTCACTTGTTCTAGTTCTTCTGCGTGA
* * * *
9144510 AGTAGTACTCCACTTGTTCTAGTTGTTTTGCGTGA
1 AGTAGTGCTTCACTTGTTCTAGTTCTTCTGCGTGA
* * *
9144545 AGTAGCGCTTCACTTGTTCTAGTTATTATGCGTGA
1 AGTAGTGCTTCACTTGTTCTAGTTCTTCTGCGTGA
**
9144580 AGTAGCACTTCACTTGTTC
1 AGTAGTGCTTCACTTGTTC
9144599 AGATTGTTCT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 75 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (35 bp):
AGTAGTGCTTCACTTGTTCTAGTTCTTCTGCGTGA
Found at i:9144565 original size:70 final size:70
Alignment explanation
Indices: 9144475--9144606 Score: 167
Period size: 70 Copynumber: 1.9 Consensus size: 70
9144465 TTCCATATGG
* * * * * * *
9144475 AGTAGTGCTTTACTTATTCTAGTTCTTCTGCTTTAAGTAGTACTCCACTTGTTCTAG-TTGTTTT
1 AGTAGCGCTTCACTTATTCTAGTTATTATGCGTGAAGTAGCACTCCACTTGTTC-AGATTGTTTT
9144539 GCGTGA
65 GCGTGA
* *
9144545 AGTAGCGCTTCACTTGTTCTAGTTATTATGCGTGAAGTAGCACTTCACTTGTTCAGATTGTT
1 AGTAGCGCTTCACTTATTCTAGTTATTATGCGTGAAGTAGCACTCCACTTGTTCAGATTGTT
9144607 CTCTGTACAA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
69 2 0.04
70 50 0.96
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (70 bp):
AGTAGCGCTTCACTTATTCTAGTTATTATGCGTGAAGTAGCACTCCACTTGTTCAGATTGTTTTG
CGTGA
Found at i:9145821 original size:31 final size:30
Alignment explanation
Indices: 9145739--9145822 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 30
9145729 TTAAATTTGG
* * **
9145739 TTTATTTTAAGTTATTAAACTTTTAAATTTAT
1 TTTATTTTAA--TATTAAAATTATAAAAATAT
*
9145771 TTTATTTT-TTATTATAAATTATAAAAATAT
1 TTTATTTTAATATTA-AAATTATAAAAATAT
9145801 TATTATTTTAATATTAAAATTA
1 T-TTATTTTAATATTAAAATTA
9145823 AATTTAATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
29 5 0.12
30 12 0.28
31 13 0.30
32 13 0.30
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (30 bp):
TTTATTTTAATATTAAAATTATAAAAATAT
Found at i:9152679 original size:13 final size:14
Alignment explanation
Indices: 9152657--9152685 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9152647 TCGGAGGAAG
9152657 AAAAGTAAAAAAAA
1 AAAAGTAAAAAAAA
9152671 AAAAG-AAAAAAAA
1 AAAAGTAAAAAAAA
9152684 AA
1 AA
9152686 GTAGATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (14 bp):
AAAAGTAAAAAAAA
Found at i:9152688 original size:25 final size:27
Alignment explanation
Indices: 9152657--9152706 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
9152647 TCGGAGGAAG
9152657 AAAAGTA-A-AAAAAAAAAAGAAAAAA
1 AAAAGTAGATAAAAAAAAAAGAAAAAA
* *
9152682 AAAAGTAGATAAAAGAAAACGAAAA
1 AAAAGTAGATAAAAAAAAAAGAAAA
9152707 TAGAAGGCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 1 0.05
27 13 0.62
ACGTcount: A:0.80, C:0.02, G:0.12, T:0.06
Consensus pattern (27 bp):
AAAAGTAGATAAAAAAAAAAGAAAAAA
Found at i:9152706 original size:21 final size:20
Alignment explanation
Indices: 9152671--9152710 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
9152661 GTAAAAAAAA
9152671 AAAAGAAAAAAAAAAGTAGAT
1 AAAAGAAAAAAAAAA-TAGAT
**
9152692 AAAAGAAAACGAAAATAGA
1 AAAAGAAAAAAAAAATAGA
9152711 AGGCGATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.07
Consensus pattern (20 bp):
AAAAGAAAAAAAAAATAGAT
Found at i:9157221 original size:44 final size:44
Alignment explanation
Indices: 9157158--9157251 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 44
9157148 TCATCAAATA
9157158 TAAGAAAACCCTATAAACAATATCAGAGAT-TCAGATGTCAAGAG
1 TAAGAAAACCCTATAAACAATATCAGAG-TCTCAGATGTCAAGAG
9157202 TAAGAAAACCCTATAAACAATATCAGAGTCTCAGATGTCAAGAG
1 TAAGAAAACCCTATAAACAATATCAGAGTCTCAGATGTCAAGAG
*
9157246 GAAGAA
1 TAAGAA
9157252 CAGCAACGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 1 0.02
44 47 0.98
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (44 bp):
TAAGAAAACCCTATAAACAATATCAGAGTCTCAGATGTCAAGAG
Found at i:9160723 original size:33 final size:34
Alignment explanation
Indices: 9160676--9160741 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
9160666 TTGCATTAGA
*
9160676 TTATATATATATAATTAAAATTT-AATATTAAATT
1 TTATATATATATAA-TAAAATTTAAATAATAAATT
* *
9160710 TTAT-TATTTATAATCAAATTTAAATAATAAAT
1 TTATATATATATAATAAAATTTAAATAATAAAT
9160742 ATTTTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 7 0.25
33 17 0.61
34 4 0.14
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (34 bp):
TTATATATATATAATAAAATTTAAATAATAAATT
Found at i:9175994 original size:18 final size:17
Alignment explanation
Indices: 9175958--9176000 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
9175948 GTAACTAAGG
*
9175958 ATAAAATCATATAATTA
1 ATAAAATTATATAATTA
*
9175975 ATAAAATTATGATTATTA
1 ATAAAATTAT-ATAATTA
*
9175993 ATTAAATT
1 ATAAAATT
9176001 GTAAGGTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
ATAAAATTATATAATTA
Found at i:9177550 original size:6 final size:6
Alignment explanation
Indices: 9177539--9177567 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
9177529 AGAAAAATAC
9177539 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
9177568 AAGTAGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:9184639 original size:45 final size:45
Alignment explanation
Indices: 9184589--9184737 Score: 144
Period size: 45 Copynumber: 3.4 Consensus size: 45
9184579 TACATGCTAT
9184589 GTTGTTACACGCCATGTACAAAAATATGTGACAAGCCATGGTTAG
1 GTTGTTACACGCCATGTACAAAAATATGTGACAAGCCATGGTTAG
* * ** * * *
9184634 GTTGTTATACGCCATGGT---TAGGT-TGTTATACGCCATGGTTAG
1 GTTGTTACACGCCAT-GTACAAAAATATGTGACAAGCCATGGTTAG
* * * *
9184676 GTTGTTACACGCTATGTACAAAAACATGTGACAAACTATGGTTAG
1 GTTGTTACACGCCATGTACAAAAATATGTGACAAGCCATGGTTAG
* *
9184721 GCTGTTACACGTCATGT
1 GTTGTTACACGCCATGT
9184738 TGAAAAAAAA
Statistics
Matches: 78, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
41 2 0.03
42 29 0.37
43 2 0.03
44 1 0.01
45 42 0.54
46 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (45 bp):
GTTGTTACACGCCATGTACAAAAATATGTGACAAGCCATGGTTAG
Found at i:9184649 original size:21 final size:21
Alignment explanation
Indices: 9184623--9184687 Score: 121
Period size: 21 Copynumber: 3.1 Consensus size: 21
9184613 TATGTGACAA
9184623 GCCATGGTTAGGTTGTTATAC
1 GCCATGGTTAGGTTGTTATAC
9184644 GCCATGGTTAGGTTGTTATAC
1 GCCATGGTTAGGTTGTTATAC
*
9184665 GCCATGGTTAGGTTGTTACAC
1 GCCATGGTTAGGTTGTTATAC
9184686 GC
1 GC
9184688 TATGTACAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.35
Consensus pattern (21 bp):
GCCATGGTTAGGTTGTTATAC
Found at i:9186180 original size:94 final size:94
Alignment explanation
Indices: 9186001--9186185 Score: 243
Period size: 94 Copynumber: 2.0 Consensus size: 94
9185991 TGTTAGGAAC
* *
9186001 AATTTGCTTCAATAAAGACTTCAATGTTAATAAAGAAATAAATAGATAAAAAATAGTTAATATTT
1 AATTTACTTCAATAAAGACTTCAATGTTAATAAAGAAATAAATAGATAAAAAATAGTCAATATTT
*
9186066 AATTTAATAATAAAATATTAATTAAGAAA
66 AATTTAATAAAAAAATATTAATTAAGAAA
* * * *
9186095 AATTTACTTTAAT-AAGAACTTCAATTGTTAATAAGGAAAT-AA-A-ATAAAAATTAGTCAATTC
1 AATTTACTTCAATAAAG-ACTTCAA-TGTTAATAAAGAAATAAATAGATAAAAAATAGTCAA-TA
9186156 TTTAATTTAATAAAAAAATCATTAATTAAG
63 TTTAATTTAATAAAAAAAT-ATTAATTAAG
9186186 GATGACTTAA
Statistics
Matches: 80, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
92 13 0.16
93 23 0.29
94 30 0.38
95 14 0.17
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.35
Consensus pattern (94 bp):
AATTTACTTCAATAAAGACTTCAATGTTAATAAAGAAATAAATAGATAAAAAATAGTCAATATTT
AATTTAATAAAAAAATATTAATTAAGAAA
Found at i:9194205 original size:24 final size:23
Alignment explanation
Indices: 9194178--9194232 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
9194168 CTAGTTAGAC
* *
9194178 TAGAATAACAATTCTTGATTATAT
1 TAGAATAA-AATTCCTAATTATAT
*
9194202 TAGAATAAGATTCCTAATTATAT
1 TAGAATAAAATTCCTAATTATAT
*
9194225 TAGGATAA
1 TAGAATAA
9194233 GATTATTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (23 bp):
TAGAATAAAATTCCTAATTATAT
Found at i:9194592 original size:17 final size:18
Alignment explanation
Indices: 9194570--9194607 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
9194560 AGAAAAGTAC
9194570 AAAAAAAAAGA-AAAAGA
1 AAAAAAAAAGATAAAAGA
**
9194587 AAAAAAGTAGATAAAAGA
1 AAAAAAAAAGATAAAAGA
9194605 AAA
1 AAA
9194608 CGAAAATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAGATAAAAGA
Found at i:9197336 original size:144 final size:144
Alignment explanation
Indices: 9197087--9197893 Score: 1033
Period size: 144 Copynumber: 5.6 Consensus size: 144
9197077 ATTCCTAACA
* * * * * ** * * *
9197087 AAATTGAATTATTAAGATCTCTTTCTAAACTTGATATGTCAAACAATAATTTCACAGGTTCTATC
1 AAATTGGATTGTTAAGATCTCTTTCTGACCTTGATTTGTCTTACAACAATTTCACAGGTCCAATC
* * * ** *
9197152 CCAATTTCTATAGGAAATTTGA-AAAGCTTATATGTTCTTTACCTTTACAACAACAAACTCTCTG
66 CCTACTTCGATAGGAAATTTGATAAA-CTTATCCGTTCTTTACCTTAACAACAACAAACTCTCTG
9197216 GTTTCATTCCCCAAG
130 GTTTCATTCCCCAAG
* * * * * *
9197231 GAATTGGGTTGTTAAGATCTCTTTCTGAACTTGATTTGTCTGAAAACAATCTCACAGGTCCAATC
1 AAATTGGATTGTTAAGATCTCTTTCTGACCTTGATTTGTCTTACAACAATTTCACAGGTCCAATC
* * * * * * * * * **
9197296 CCAACTTCAATAGGGAATTTGATAAATTTATCCGTCCTTTACCTTTACAATAACAGACTCTTTAA
66 CCTACTTCGATAGGAAATTTGATAAACTTATCCGTTCTTTACCTTAACAACAACAAACTCTCTGG
*
9197361 TTCCATTCCCCAAG
131 TTTCATTCCCCAAG
* *
9197375 AAATTGGATTGTTAAGATCTCTTTTTGACCTTGATTTGTCTTACAACAGTTTCACAGGTCCAATC
1 AAATTGGATTGTTAAGATCTCTTTCTGACCTTGATTTGTCTTACAACAATTTCACAGGTCCAATC
* *
9197440 CCTGCTTCGATAGGAAATTTGATAAACTTATCCGTTCTTGACCTTAACAACAACAAACTCTCTGG
66 CCTACTTCGATAGGAAATTTGATAAACTTATCCGTTCTTTACCTTAACAACAACAAACTCTCTGG
*
9197505 TTTGATTCCCCAAG
131 TTTCATTCCCCAAG
* * *
9197519 AAATTGGATTGTTAAGATCTCTTTCTGACCTTAAATTGTCTTACAACAGTTTCACAGGTCCAATC
1 AAATTGGATTGTTAAGATCTCTTTCTGACCTTGATTTGTCTTACAACAATTTCACAGGTCCAATC
* * *
9197584 CCTGCTTCGATAGGAAATTTGATAAACTTGTCCGTTCTTTACCTTAACAACAACAAACTCTCTGA
66 CCTACTTCGATAGGAAATTTGATAAACTTATCCGTTCTTTACCTTAACAACAACAAACTCTCTGG
*
9197649 TTTAATTCCCCAAG
131 TTTCATTCCCCAAG
* * * *
9197663 AAATTGGATTGTTAAGATCTCTTTCTGTCCTTGAATTGTCTTACAACAGTTTCACAGGTCCAATT
1 AAATTGGATTGTTAAGATCTCTTTCTGACCTTGATTTGTCTTACAACAATTTCACAGGTCCAATC
* * *
9197728 CCTACTTCGATAGGAAGTTTGATAAACTTATTCTTTCTTTACCTTAACAACAACAAACTCTCTGG
66 CCTACTTCGATAGGAAATTTGATAAACTTATCCGTTCTTTACCTTAACAACAACAAACTCTCTGG
*
9197793 TTCCATTCCCCAAG
131 TTTCATTCCCCAAG
* * * *
9197807 AACTTGGTTTGTTAAGATCTCTTTCTGACCTTG-TATTGTCTGACAACAATTTCACAGGTTCAAT
1 AAATTGGATTGTTAAGATCTCTTTCTGACCTTGAT-TTGTCTTACAACAATTTCACAGGTCCAAT
* * *
9197871 CCCTGCTTCAATAGGAATTTTGA
65 CCCTACTTCGATAGGAAATTTGA
9197894 GTAATTTGTC
Statistics
Matches: 583, Mismatches: 78, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
144 580 0.99
145 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (144 bp):
AAATTGGATTGTTAAGATCTCTTTCTGACCTTGATTTGTCTTACAACAATTTCACAGGTCCAATC
CCTACTTCGATAGGAAATTTGATAAACTTATCCGTTCTTTACCTTAACAACAACAAACTCTCTGG
TTTCATTCCCCAAG
Found at i:9214271 original size:22 final size:22
Alignment explanation
Indices: 9214246--9214288 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
9214236 CATAACCTAC
9214246 TATTACAC-TGACATTTCATGAA
1 TATTACACGTG-CATTTCATGAA
* *
9214268 TATTGCACGTGTATTTCATGA
1 TATTACACGTGCATTTCATGA
9214289 GATCTGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (22 bp):
TATTACACGTGCATTTCATGAA
Found at i:9215944 original size:21 final size:18
Alignment explanation
Indices: 9215903--9215947 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
9215893 TATAAATCTC
*
9215903 ATTTTTATTAAAAAAAAT
1 ATTTTAATTAAAAAAAAT
9215921 ATTTTAATTGAAAAATATAAT
1 ATTTTAATT-AAAAA-A-AAT
9215942 ATTTTA
1 ATTTTA
9215948 TAATTTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 5 0.22
20 1 0.04
21 9 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATTTTAATTAAAAAAAAT
Found at i:9226563 original size:11 final size:10
Alignment explanation
Indices: 9226531--9226567 Score: 58
Period size: 9 Copynumber: 3.7 Consensus size: 10
9226521 AATATTATTT
9226531 TATTTTAATA
1 TATTTTAATA
9226541 TATTTTAA-A
1 TATTTTAATA
9226550 TATTTTAAGTA
1 TATTTTAA-TA
9226561 TATTTTA
1 TATTTTA
9226568 GAATTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.36
10 8 0.32
11 8 0.32
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (10 bp):
TATTTTAATA
Found at i:9229305 original size:14 final size:14
Alignment explanation
Indices: 9229286--9229320 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
9229276 TCATCTTCTC
9229286 TTTGTGTGCGTGTG
1 TTTGTGTGCGTGTG
*
9229300 TTTGTGTGTGTGTG
1 TTTGTGTGCGTGTG
*
9229314 TATGTGT
1 TTTGTGT
9229321 TTTTTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.03, C:0.03, G:0.40, T:0.54
Consensus pattern (14 bp):
TTTGTGTGCGTGTG
Found at i:9233768 original size:13 final size:13
Alignment explanation
Indices: 9233750--9233774 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9233740 TACAAGATAA
9233750 TTAGAGAGAGAAT
1 TTAGAGAGAGAAT
9233763 TTAGAGAGAGAA
1 TTAGAGAGAGAA
9233775 GCTCTCCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (13 bp):
TTAGAGAGAGAAT
Found at i:9238398 original size:13 final size:13
Alignment explanation
Indices: 9238380--9238404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9238370 GGAAAATGAG
9238380 ATTTTATAAAATA
1 ATTTTATAAAATA
9238393 ATTTTATAAAAT
1 ATTTTATAAAAT
9238405 TTTTAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:9242980 original size:24 final size:24
Alignment explanation
Indices: 9242948--9242999 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
9242938 ATATATACCA
9242948 TTCATTTCAACTTTGACTTGAAAT
1 TTCATTTCAACTTTGACTTGAAAT
9242972 TTCATTTCAACTTTGACTTGAAAT
1 TTCATTTCAACTTTGACTTGAAAT
9242996 TTCA
1 TTCA
9243000 GAATGAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (24 bp):
TTCATTTCAACTTTGACTTGAAAT
Found at i:9261143 original size:117 final size:119
Alignment explanation
Indices: 9260908--9261132 Score: 312
Period size: 117 Copynumber: 1.9 Consensus size: 119
9260898 TGTAATAAAA
** *
9260908 GAATAAGAACTTATTTAAATTTTTTAAAATAATTTAGGGGCTTTTTTATGTATTATGTCAAAAAT
1 GAATAAGAACTTATTTAAATTTTTTAAAATAATTTAGGAACTTTTTTAAGTATTATGTCAAAAAT
** *
9260973 TCATTTATTAAAACTTGAATTCAAACCTAATAAAATTTGAAAAAATCCATATCC
66 TCATTTACAAAAACTTGAATTCAAACATAATAAAATTTGAAAAAATCCATATCC
* * * * *
9261027 GAATAAGTATTTATTTAACTTTTTT-AAATAGTTTA-GAACTTTTTTCAAGTGTTATGTC-AAAA
1 GAATAAGAACTTATTTAAATTTTTTAAAATAATTTAGGAACTTTTTT-AAGTATTATGTCAAAAA
*
9261089 TTCATTTACAAAAACTTGAATTCAAACATAATTAAATTTGAAAA
65 TTCATTTACAAAAACTTGAATTCAAACATAATAAAATTTGAAAA
9261133 GATTCGTATC
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
117 52 0.56
118 19 0.20
119 22 0.24
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (119 bp):
GAATAAGAACTTATTTAAATTTTTTAAAATAATTTAGGAACTTTTTTAAGTATTATGTCAAAAAT
TCATTTACAAAAACTTGAATTCAAACATAATAAAATTTGAAAAAATCCATATCC
Found at i:9261194 original size:18 final size:18
Alignment explanation
Indices: 9261149--9261187 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9261139 TATCCAAAAT
*
9261149 AATTT-AAATTCAATAAA
1 AATTTCAAATTCAACAAA
*
9261166 AATTTCAAATTCAACATA
1 AATTTCAAATTCAACAAA
9261184 AATT
1 AATT
9261188 CGAAATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTTCAAATTCAACAAA
Found at i:9264200 original size:50 final size:49
Alignment explanation
Indices: 9264096--9264201 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 49
9264086 TTTCCTTTAT
* * * **
9264096 TTTTTTTCCATGAAGCAGCACAAGTCATTGTTTCATTTTTATTTTTTTTA
1 TTTTTTTCCATAAAGCAGCACAAGTCATTGTTTCA-TTTGATTTATTCAA
9264146 TTTTTTTCCATAAAGCAGCACAAGTCATTGTTTCA-TTGATCTTATTCAA
1 TTTTTTTCCATAAAGCAGCACAAGTCATTGTTTCATTTGAT-TTATTCAA
*
9264195 CTTTTTT
1 TTTTTTT
9264202 ATTTTGGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
48 4 0.08
49 11 0.22
50 34 0.69
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.51
Consensus pattern (49 bp):
TTTTTTTCCATAAAGCAGCACAAGTCATTGTTTCATTTGATTTATTCAA
Found at i:9269018 original size:21 final size:21
Alignment explanation
Indices: 9268994--9269054 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
9268984 TTATATGTTA
9268994 TATAAATATTTTTAATTTTTT
1 TATAAATATTTTTAATTTTTT
**
9269015 TATAAAT-TCTTTTAATAATTT
1 TATAAATAT-TTTTAATTTTTT
* *
9269036 TAAAAATAATTTTTTATTT
1 TATAAAT-ATTTTTAATTT
9269055 AATAATTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 1 0.03
21 23 0.74
22 6 0.19
23 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TATAAATATTTTTAATTTTTT
Found at i:9269136 original size:3 final size:3
Alignment explanation
Indices: 9269119--9269163 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
9269109 TTAAAATTTT
*
9269119 TTA TTT TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9269164 TACTCGTATG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:9280757 original size:14 final size:14
Alignment explanation
Indices: 9280719--9280759 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
9280709 TTTATCTTTG
9280719 AAATTAAAAAATAA
1 AAATTAAAAAATAA
*
9280733 AAATCTGAAAAATAA
1 AAAT-TAAAAAATAA
9280748 AAATTCAAAAAA
1 AAATT-AAAAAA
9280760 ACAAAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (14 bp):
AAATTAAAAAATAA
Found at i:9280759 original size:16 final size:15
Alignment explanation
Indices: 9280724--9280766 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
9280714 CTTTGAAATT
*
9280724 AAAAAATAAAAATCT
1 AAAAAATAAAAATCA
*
9280739 GAAAAATAAAAATTCA
1 AAAAAATAAAAA-TCA
*
9280755 AAAAAACAAAAA
1 AAAAAATAAAAA
9280767 AGAACAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (15 bp):
AAAAAATAAAAATCA
Done.