Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 49 of 93
Found at i:18842251 original size:20 final size:20
Alignment explanation
Indices: 18842214--18842252 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18842204 TAAAAGAACA
**
18842214 TAAATAATAAAATTTAAATT
1 TAAATAATAAAAAATAAATT
18842234 TAAATAATAAAAAATAAAT
1 TAAATAATAAAAAATAAAT
18842253 ATCTCCAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAATAAAAAATAAATT
Found at i:18843056 original size:15 final size:15
Alignment explanation
Indices: 18843036--18843070 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
18843026 TAAATATGTT
*
18843036 TATATTTAAAGTATA
1 TATATTAAAAGTATA
18843051 TATATTAAAAGTATA
1 TATATTAAAAGTATA
18843066 TATAT
1 TATAT
18843071 AATAGTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (15 bp):
TATATTAAAAGTATA
Found at i:18851237 original size:60 final size:59
Alignment explanation
Indices: 18851109--18851241 Score: 169
Period size: 60 Copynumber: 2.2 Consensus size: 59
18851099 AACATTTAAA
* * * *
18851109 CATTTTGAGCATTTTGGAGTAGTTTTTAATACATGAAAAAAACCTGTGAGCGTTTTGAG
1 CATTTTAAGCATTTTGGAGTAGTATTTAATACATGAAAAAAACCTGTGAACATTTTGAG
* * *
18851168 CATTGTTAAGCATTTTGGAGT-GATATTTAATATATGAAGAAAAACTTTTGAACATTTTGAG
1 CATT-TTAAGCATTTTGGAGTAG-TATTTAATACATGAA-AAAAACCTGTGAACATTTTGAG
18851229 CATTTTAAGCATT
1 CATTTTAAGCATT
18851242 CATATTCGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
59 5 0.08
60 37 0.58
61 22 0.34
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (59 bp):
CATTTTAAGCATTTTGGAGTAGTATTTAATACATGAAAAAAACCTGTGAACATTTTGAG
Found at i:18851385 original size:21 final size:21
Alignment explanation
Indices: 18851354--18851453 Score: 85
Period size: 21 Copynumber: 4.7 Consensus size: 21
18851344 ATGACTAGTT
* *
18851354 TTTAGGCATTGCGTGACTGAT
1 TTTAGACATTGCGTGACTGAC
* * *
18851375 TTTGGATATTGCGTGACTAAC
1 TTTAGACATTGCGTGACTGAC
* ** * *
18851396 TTTGGGTATTACGTGACT-AG
1 TTTAGACATTGCGTGACTGAC
18851416 TTGATAGACATTGCGTGACTGAC
1 TT--TAGACATTGCGTGACTGAC
18851439 TTTAGACATTGCGTG
1 TTTAGACATTGCGTG
18851454 GCTTGTTTAT
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
20 3 0.05
21 45 0.71
22 12 0.19
23 3 0.05
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (21 bp):
TTTAGACATTGCGTGACTGAC
Found at i:18851487 original size:26 final size:26
Alignment explanation
Indices: 18851458--18851548 Score: 109
Period size: 26 Copynumber: 3.7 Consensus size: 26
18851448 TGCGTGGCTT
*
18851458 GTTTATGATAAGGTATTGTGTGACTA
1 GTTTTTGATAAGGTATTGTGTGACTA
* *
18851484 GTTTTTGATAAGGCATTGCGTGACTA
1 GTTTTTGATAAGGTATTGTGTGACTA
*
18851510 G---TTGAT-AGGTATTGTGTGATTA
1 GTTTTTGATAAGGTATTGTGTGACTA
*
18851532 GTTTTTGATAAGATATT
1 GTTTTTGATAAGGTATT
18851549 TGACTAGAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
22 14 0.26
23 5 0.09
25 5 0.09
26 30 0.56
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.44
Consensus pattern (26 bp):
GTTTTTGATAAGGTATTGTGTGACTA
Found at i:18854647 original size:2 final size:2
Alignment explanation
Indices: 18854640--18854673 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
18854630 GTCTTAAGTT
18854640 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
18854674 CTACCTCGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:18857766 original size:2 final size:2
Alignment explanation
Indices: 18857759--18857817 Score: 79
Period size: 2 Copynumber: 31.0 Consensus size: 2
18857749 TTTTCTAAAA
* *
18857759 AT AT AT AT AG AT AT AT AT -T AT A- AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18857799 AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
18857818 TTGACTTGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
1 3 0.06
2 48 0.94
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:18858667 original size:26 final size:26
Alignment explanation
Indices: 18858637--18858687 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18858627 AGTTTTTAGA
* **
18858637 TATTACTATTTTATTTGTAATTTAAT
1 TATTAATATTTTATTTACAATTTAAT
18858663 TATTAATATTTTATTTACAATTTAA
1 TATTAATATTTTATTTACAATTTAA
18858688 ATATAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (26 bp):
TATTAATATTTTATTTACAATTTAAT
Found at i:18866578 original size:34 final size:34
Alignment explanation
Indices: 18866540--18866647 Score: 82
Period size: 34 Copynumber: 3.1 Consensus size: 34
18866530 CTTTCTCACC
18866540 CTCTTATTGCCATTTTTCTGCTCTCTCACCAGCA
1 CTCTTATTGCCATTTTTCTGCTCTCTCACCAGCA
* * *
18866574 CTCTT-TCT-CCCTTTTCTTTGC-CTCAT-ACACGGCA
1 CTCTTAT-TGCCATTTT-TCTGCTCTC-TCAC-CAGCA
* *
18866608 CTCTCCAACTGCCA-TTTTCTGCTCTCTCACCAGCA
1 CTCT--TATTGCCATTTTTCTGCTCTCTCACCAGCA
18866643 CTCTT
1 CTCTT
18866648 TCTCTCTTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 21
0.65 0.11 0.25
Matches are distributed among these distances:
33 12 0.22
34 19 0.35
35 13 0.24
36 9 0.16
37 2 0.04
ACGTcount: A:0.14, C:0.39, G:0.08, T:0.39
Consensus pattern (34 bp):
CTCTTATTGCCATTTTTCTGCTCTCTCACCAGCA
Found at i:18877083 original size:20 final size:20
Alignment explanation
Indices: 18877058--18877103 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
18877048 TTTTGACCCC
18877058 ATTTGACTTATT-AGAGTATA
1 ATTTGACTTATTGA-AGTATA
*
18877078 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
18877098 ATTTGA
1 ATTTGA
18877104 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:18877179 original size:28 final size:27
Alignment explanation
Indices: 18877148--18877200 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
18877138 TTTGGAGTAA
*
18877148 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
18877176 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
18877201 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:18877206 original size:28 final size:28
Alignment explanation
Indices: 18877148--18877206 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
18877138 TTTGGAGTAA
* *
18877148 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
18877176 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
18877204 AGG
1 AGG
18877207 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:18885122 original size:20 final size:20
Alignment explanation
Indices: 18885097--18885142 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
18885087 TTTTGACCCC
18885097 ATTTGACTTATT-AGAGTATA
1 ATTTGACTTATTGA-AGTATA
*
18885117 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
18885137 ATTTGA
1 ATTTGA
18885143 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:18885218 original size:28 final size:27
Alignment explanation
Indices: 18885187--18885239 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
18885177 TTTGGAGTAT
*
18885187 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
18885215 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
18885240 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:18885245 original size:28 final size:28
Alignment explanation
Indices: 18885187--18885245 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
18885177 TTTGGAGTAT
* *
18885187 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
18885215 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
18885243 AGG
1 AGG
18885246 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:18891251 original size:42 final size:42
Alignment explanation
Indices: 18891199--18891340 Score: 221
Period size: 42 Copynumber: 3.4 Consensus size: 42
18891189 TGTTGATTTG
*
18891199 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCTGTTGAT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGAT
* *
18891241 GACTCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGAT
* * *
18891283 GACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGAT
*
18891325 GACCCGGCTATATGCG
1 GACCCGGCTATGTGCG
18891341 CATAAGCCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGAT
Found at i:18893142 original size:18 final size:18
Alignment explanation
Indices: 18893096--18893142 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
18893086 TTAATATTTT
18893096 AATATTTTTTATTCATAA
1 AATATTTTTTATTCATAA
* *
18893114 ACTAATATTTTATTC-TAA
1 AAT-ATTTTTTATTCATAA
18893132 AATATTCTTTT
1 AATATT-TTTT
18893143 CACCCGTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
17 2 0.09
18 11 0.48
19 10 0.43
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (18 bp):
AATATTTTTTATTCATAA
Found at i:18893598 original size:21 final size:21
Alignment explanation
Indices: 18893573--18893654 Score: 119
Period size: 21 Copynumber: 3.9 Consensus size: 21
18893563 AGTTTTTTGC
* *
18893573 TGCAGTGAGAATGAATCTCGT
1 TGCAGAGACAATGAATCTCGT
*
18893594 TGCAGAGACAATGAATCTCGC
1 TGCAGAGACAATGAATCTCGT
* *
18893615 TGCAGTGAGAATGAATCTCGT
1 TGCAGAGACAATGAATCTCGT
18893636 TGCAGAGACAATGAATCTC
1 TGCAGAGACAATGAATCTC
18893655 ACTATAGTGA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (21 bp):
TGCAGAGACAATGAATCTCGT
Found at i:18893630 original size:42 final size:42
Alignment explanation
Indices: 18893571--18893654 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
18893561 AGAGTTTTTT
18893571 GCTGCAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTC
1 GCTGCAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTC
18893613 GCTGCAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTC
1 GCTGCAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTC
18893655 ACTATAGTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (42 bp):
GCTGCAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTC
Found at i:18893664 original size:42 final size:42
Alignment explanation
Indices: 18893575--18893667 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
18893565 TTTTTTGCTG
* *
18893575 CAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTCGCTG
1 CAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTCACTA
18893617 CAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTCACTA
1 CAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTCACTA
*
18893659 TAGTGAGAA
1 CAGTGAGAA
18893668 ACGGGACGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (42 bp):
CAGTGAGAATGAATCTCGTTGCAGAGACAATGAATCTCACTA
Found at i:18894200 original size:2 final size:2
Alignment explanation
Indices: 18894188--18894247 Score: 111
Period size: 2 Copynumber: 30.0 Consensus size: 2
18894178 AATGCACAAC
*
18894188 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18894230 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
18894248 CAACATGATA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:18896886 original size:17 final size:16
Alignment explanation
Indices: 18896859--18896905 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
18896849 AGTATAGATC
18896859 AAAATATTTTAAAATT
1 AAAATATTTTAAAATT
*
18896875 AAAATAATTTTAATATT
1 AAAAT-ATTTTAAAATT
18896892 --AATATTTGTAAAAT
1 AAAATATTT-TAAAAT
18896906 ATTAATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 4 0.15
15 8 0.30
16 5 0.19
17 10 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
AAAATATTTTAAAATT
Found at i:18896934 original size:25 final size:26
Alignment explanation
Indices: 18896900--18896970 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 26
18896890 TTAATATTTG
*
18896900 TAAAATATTAATATTTATTTATAAT-T
1 TAAAATATTATTATTTATTTA-AATAT
*
18896926 T-AAATATTATTA-TAATTTAAATAT
1 TAAAATATTATTATTTATTTAAATAT
18896950 TAAAATATTATTATTT-TTTAA
1 TAAAATATTATTATTTATTTAA
18896971 TTTTTTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 3 0.08
24 8 0.21
25 26 0.67
26 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TAAAATATTATTATTTATTTAAATAT
Found at i:18896950 original size:14 final size:17
Alignment explanation
Indices: 18896918--18896951 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
18896908 TAATATTTAT
18896918 TTATAATTTAAATATTA
1 TTATAATTTAAATATTA
18896935 TTATAATTTAAATATTA
1 TTATAATTTAAATATTA
18896952 AAATATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATAATTTAAATATTA
Found at i:18898805 original size:2 final size:2
Alignment explanation
Indices: 18898798--18898855 Score: 64
Period size: 2 Copynumber: 29.0 Consensus size: 2
18898788 TCAATCACAN
* * *
18898798 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TG TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
18898840 -A GTG TA TA TA TA TA TA
1 TA -TA TA TA TA TA TA TA
18898856 GACATTTCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:18898986 original size:36 final size:36
Alignment explanation
Indices: 18898946--18899192 Score: 199
Period size: 39 Copynumber: 6.6 Consensus size: 36
18898936 AACTTAACTT
* * *
18898946 ATGTGCACTTCCACACTGCACATAGCTAATACCATC
1 ATGTGCACTCCCACACTGCACATGGCTAATATCATC
* *
18898982 ATGTGCACTCCCACATTGCACATGGCAAATATCATC
1 ATGTGCACTCCCACACTGCACATGGCTAATATCATC
* *
18899018 ATGTGCACTCCCACACCGCACATGGCATCTATCATCATC
1 ATGTGCACTCCCACACTGCACATGGC-T-AAT-ATCATC
* *
18899057 ATGTGCACTCCCACACTGCGCATGACATATATCATCATC
1 ATGTGCACTCCCACACTGCACATGGC-TA-AT-ATCATC
* * **
18899096 ATGTGTACTCTCACACCCCACATGGCATATATCATCATC
1 ATGTGCACTCCCACACTGCACATGGC-TA-AT-ATCATC
* * * *** * * *
18899135 GTGTGCACTTCCACACCGCACACCAC-CATCACCGTC
1 ATGTGCACTCCCACACTGCACATGGCTAAT-ATCATC
18899171 ATGTGCACTCCCACACTGCACA
1 ATGTGCACTCCCACACTGCACA
18899193 CTCACGGTTA
Statistics
Matches: 174, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
36 81 0.47
38 2 0.01
39 91 0.52
ACGTcount: A:0.28, C:0.36, G:0.13, T:0.23
Consensus pattern (36 bp):
ATGTGCACTCCCACACTGCACATGGCTAATATCATC
Found at i:18899066 original size:39 final size:39
Alignment explanation
Indices: 18898946--18899156 Score: 245
Period size: 39 Copynumber: 5.6 Consensus size: 39
18898936 AACTTAACTT
* * * *
18898946 ATGTGCACTTCCACACTGCACATAGC-TA-AT-ACCATC
1 ATGTGCACTCCCACACCGCACATGGCATATATCATCATC
**
18898982 ATGTGCACTCCCACATTGCACATGGCA-A-AT-ATCATC
1 ATGTGCACTCCCACACCGCACATGGCATATATCATCATC
*
18899018 ATGTGCACTCCCACACCGCACATGGCATCTATCATCATC
1 ATGTGCACTCCCACACCGCACATGGCATATATCATCATC
* * *
18899057 ATGTGCACTCCCACACTGCGCATGACATATATCATCATC
1 ATGTGCACTCCCACACCGCACATGGCATATATCATCATC
* * *
18899096 ATGTGTACTCTCACACCCCACATGGCATATATCATCATC
1 ATGTGCACTCCCACACCGCACATGGCATATATCATCATC
* *
18899135 GTGTGCACTTCCACACCGCACA
1 ATGTGCACTCCCACACCGCACA
18899157 CCACCATCAC
Statistics
Matches: 149, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
36 56 0.38
38 2 0.01
39 91 0.61
ACGTcount: A:0.28, C:0.35, G:0.13, T:0.25
Consensus pattern (39 bp):
ATGTGCACTCCCACACCGCACATGGCATATATCATCATC
Found at i:18901396 original size:27 final size:27
Alignment explanation
Indices: 18901366--18901448 Score: 148
Period size: 27 Copynumber: 3.1 Consensus size: 27
18901356 CTTCTATCTA
18901366 TTGGGTCATGCCCATTTTTCTTTCTTG
1 TTGGGTCATGCCCATTTTTCTTTCTTG
* *
18901393 TTGGGCCATGCCCATTTTTCTTTCTTC
1 TTGGGTCATGCCCATTTTTCTTTCTTG
18901420 TTGGGTCATGCCCATTTTTCTTTCTTG
1 TTGGGTCATGCCCATTTTTCTTTCTTG
18901447 TT
1 TT
18901449 CTTTTCTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.07, C:0.24, G:0.17, T:0.52
Consensus pattern (27 bp):
TTGGGTCATGCCCATTTTTCTTTCTTG
Found at i:18901457 original size:5 final size:5
Alignment explanation
Indices: 18901435--18901472 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
18901425 TCATGCCCAT
18901435 TTTTC -TTTC TTGTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTT
18901473 CTTCCACCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
5 22 0.71
6 5 0.16
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:18901807 original size:35 final size:34
Alignment explanation
Indices: 18901771--18901864 Score: 116
Period size: 34 Copynumber: 2.8 Consensus size: 34
18901761 ATTAGCTGCA
* *
18901771 AAAATTGCACTTCTCAGCCTCCAAAACCAGTAGC
1 AAAATTGCACTTTTCAGCCTCCAAAACCAGCAGC
* * * *
18901805 AAAATTGTACTTTTCAACCTCTAAAATCAGCAGC
1 AAAATTGCACTTTTCAGCCTCCAAAACCAGCAGC
* *
18901839 AAAACTGCACTTTTCAGACTCCAAAA
1 AAAATTGCACTTTTCAGCCTCCAAAA
18901865 TTAGTTCTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (34 bp):
AAAATTGCACTTTTCAGCCTCCAAAACCAGCAGC
Found at i:18901865 original size:34 final size:34
Alignment explanation
Indices: 18901757--18901865 Score: 112
Period size: 34 Copynumber: 3.2 Consensus size: 34
18901747 TTACAGCCTT
* * * *
18901757 CAAAATTAGCTGCAAAAATTGCACTTCTCAGCCTC
1 CAAAATCAGCAGC-AAAATTGCACTTTTCAGACTC
* * *
18901792 CAAAACCAGTAGCAAAATTGTACTTTTCA-ACCTC
1 CAAAATCAGCAGCAAAATTGCACTTTTCAGA-CTC
* *
18901826 TAAAATCAGCAGCAAAACTGCACTTTTCAGACTC
1 CAAAATCAGCAGCAAAATTGCACTTTTCAGACTC
18901860 CAAAAT
1 CAAAAT
18901866 TAGTTCTTTC
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
34 49 0.83
35 10 0.17
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.25
Consensus pattern (34 bp):
CAAAATCAGCAGCAAAATTGCACTTTTCAGACTC
Found at i:18902261 original size:17 final size:20
Alignment explanation
Indices: 18902239--18902275 Score: 53
Period size: 17 Copynumber: 2.0 Consensus size: 20
18902229 TCCCATATAT
18902239 TTATAT-TAT-TA-TTATTA
1 TTATATATATATATTTATTA
18902256 TTATATATATATATTTATTA
1 TTATATATATATATTTATTA
18902276 ACTTCAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 2 0.12
20 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATATATATATATTTATTA
Found at i:18907020 original size:19 final size:19
Alignment explanation
Indices: 18906996--18907033 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
18906986 CCATTTGACT
18906996 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
18907015 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
18907034 GTTGAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:18907145 original size:28 final size:28
Alignment explanation
Indices: 18907086--18907157 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
18907076 GCATAAGGGT
**
18907086 AAAATGGTAATTTTACCATTCTAGGATT
1 AAAATGGTAATTTTACCATTCTAGGAGC
*** *
18907114 AAAATGGTAATTTTGTGATTCTAGGGGC
1 AAAATGGTAATTTTACCATTCTAGGAGC
*
18907142 AAAATTGTAATTTTAC
1 AAAATGGTAATTTTAC
18907158 ACACCCGACA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (28 bp):
AAAATGGTAATTTTACCATTCTAGGAGC
Found at i:18919103 original size:20 final size:20
Alignment explanation
Indices: 18919078--18919123 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
18919068 CTTCTAAACC
18919078 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
18919098 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
18919118 TCAAAT
1 TCAAAT
18919124 GGCGTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:18920293 original size:108 final size:108
Alignment explanation
Indices: 18920100--18920302 Score: 329
Period size: 108 Copynumber: 1.9 Consensus size: 108
18920090 TGAAATGACT
* * *
18920100 AAATATGTTGATTTGGTTACATCTTTCACAATTTACAAATACACATTTTTTAGAAATTATTCAAC
1 AAATATGTTAATTTAGTTACAACTTTCACAATTTACAAATACACATTTTTTAGAAATTATTCAAC
18920165 TCTTACCCAATTTACTTTTTATTTAAATTTGCTTAAATTAGCA
66 TCTTACCCAATTTACTTTTTATTTAAATTTGCTTAAATTAGCA
* *
18920208 AAATATGTTAATTTAGTTACAACTTTCATAATTTACAAATACATATTCTTTT-GAAATTATTCAA
1 AAATATGTTAATTTAGTTACAACTTTCACAATTTACAAATACACATT-TTTTAGAAATTATTCAA
18920272 CTCTTACCCAATTTA-TCTTTTATTTAAATTT
65 CTCTTACCCAATTTACT-TTTTATTTAAATTT
18920303 ACTCAAAATT
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 83 0.94
109 4 0.05
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.46
Consensus pattern (108 bp):
AAATATGTTAATTTAGTTACAACTTTCACAATTTACAAATACACATTTTTTAGAAATTATTCAAC
TCTTACCCAATTTACTTTTTATTTAAATTTGCTTAAATTAGCA
Found at i:18922571 original size:2 final size:2
Alignment explanation
Indices: 18922547--18922707 Score: 179
Period size: 2 Copynumber: 80.5 Consensus size: 2
18922537 ATTACATTTT
* * *
18922547 TA TA GTA TA TG TA TA TA TG TA TA TA GTA -A TA CT- TA TA TA CA
1 TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
* *
18922588 TA TA TA AA TA TA TA TA TA TA TA GTA -A TA CT- TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA
* *
18922630 TA AA TA TA TA TA TA TA TA TA TA TA TA TA NA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18922671 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18922708 TTCAGACATG
Statistics
Matches: 135, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
1 5 0.04
2 122 0.90
3 8 0.06
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:18924300 original size:20 final size:21
Alignment explanation
Indices: 18924262--18924300 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18924252 ATTAAAACTA
18924262 AATTAAAGCAAACACTAAATT
1 AATTAAAGCAAACACTAAATT
18924283 AATTAATAG-AAA-ACTAAA
1 AATTAA-AGCAAACACTAAA
18924301 AATTCACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 9 0.53
22 2 0.12
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (21 bp):
AATTAAAGCAAACACTAAATT
Found at i:18929374 original size:4 final size:4
Alignment explanation
Indices: 18929356--18929417 Score: 97
Period size: 4 Copynumber: 15.5 Consensus size: 4
18929346 ACCATATACC
* *
18929356 ATAT ATGT ATGT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
*
18929404 ATAT ATAT AGAT AT
1 ATAT ATAT ATAT AT
18929418 CAATCATCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (4 bp):
ATAT
Found at i:18929378 original size:6 final size:6
Alignment explanation
Indices: 18929356--18929417 Score: 97
Period size: 6 Copynumber: 10.3 Consensus size: 6
18929346 ACCATATACC
* *
18929356 ATATAT GTATGT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
*
18929404 ATATAT ATAGAT AT
1 ATATAT ATATAT AT
18929418 CAATCATCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (6 bp):
ATATAT
Found at i:18929505 original size:42 final size:42
Alignment explanation
Indices: 18929458--18929583 Score: 189
Period size: 43 Copynumber: 3.0 Consensus size: 42
18929448 CATCTCATAT
* * * *
18929458 GCAACGACTTATGCGTACTCCCACTCGCACATAGTCGGGTCA
1 GCAACGACTTATGTGCACTCCTACTCGCACATAGCCGGGTCA
18929500 GCAACGACTTATGTGCACTCCTACTCGCACATAGCCGGGGTCA
1 GCAACGACTTATGTGCACTCCTACTCGCACATAGCC-GGGTCA
**
18929543 GCAACGGTTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 GCAACGACTTATGTGCACTCCTACTCGCACATAGCCGGGTC
18929584 CACATCAACA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 37 0.48
43 40 0.52
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (42 bp):
GCAACGACTTATGTGCACTCCTACTCGCACATAGCCGGGTCA
Found at i:18933455 original size:56 final size:55
Alignment explanation
Indices: 18933249--18933457 Score: 278
Period size: 54 Copynumber: 3.8 Consensus size: 55
18933239 TATCTTATCC
* * *
18933249 AGCTCATGTGCATCCCCCCACATCGTGCACATAGCCG-GACACCCCATCTTACCC
1 AGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGAGACATCCCATCTCACCT
*
18933303 AGCTCATGTGCATCCCCCCACATCGTGCACATTGCCGA-ACATCCCATCTCACCT
1 AGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGAGACATCCCATCTCACCT
* * * ***
18933357 AGCTCATGTGCATCCTCCCACATCGTGCACATAGTCGAAGTCATCGTGTCTCACCT
1 AGCTCATGTGCATCCCCCCACATCGTGCACATAGCCG-AGACATCCCATCTCACCT
* *
18933413 AGCTCATGTGCATTCCCCCACATCGTGCACATAGCCAGAGTCATC
1 AGCTCATGTGCATCCCCCCACATCGTGCACATAGCC-GAGACATC
18933458 ATGTGCATCC
Statistics
Matches: 137, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
54 83 0.61
55 1 0.01
56 52 0.38
57 1 0.01
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.22
Consensus pattern (55 bp):
AGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGAGACATCCCATCTCACCT
Found at i:18934679 original size:35 final size:36
Alignment explanation
Indices: 18934618--18934740 Score: 155
Period size: 35 Copynumber: 3.5 Consensus size: 36
18934608 GCAGCCCTTG
*
18934618 TTTTCTCTCTCAAAATTTAT--AGCAAAACTCTTTCT
1 TTTTCCCTCTCAAAATTT-TGCAGCAAAACTCTTTCT
* *
18934653 TTTT-CCTCTCAAAATTTTGCAACAAAACTCTTTTT
1 TTTTCCCTCTCAAAATTTTGCAGCAAAACTCTTTCT
* *
18934688 TTTTCCCTTTCAAAA-TTTGCTGCAAAACTCTTTCT
1 TTTTCCCTCTCAAAATTTTGCAGCAAAACTCTTTCT
*
18934723 TTTTCCCTCTAAAAATTT
1 TTTTCCCTCTCAAAATTT
18934741 ACAGCACAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
33 1 0.01
34 12 0.16
35 51 0.68
36 11 0.15
ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46
Consensus pattern (36 bp):
TTTTCCCTCTCAAAATTTTGCAGCAAAACTCTTTCT
Found at i:18934892 original size:49 final size:46
Alignment explanation
Indices: 18934833--18934927 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 46
18934823 TTGGCTGGTG
18934833 GTTTTCCCCTTTGCTCTCTCTCTCACACCGACTTCTCTCTTTCTTCTTCA
1 GTTTTCCCCTTTG--CTCTCT-T-ACACCGACTTCTCTCTTTCTTCTTCA
18934883 GTTTT-CCCTTTGCTCTCTTACACCGACTTCTCTCTTTCTTCTTCA
1 GTTTTCCCCTTTGCTCTCTTACACCGACTTCTCTCTTTCTTCTTCA
18934928 AATAGTCAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
45 26 0.58
46 1 0.02
47 6 0.13
49 7 0.16
50 5 0.11
ACGTcount: A:0.08, C:0.38, G:0.06, T:0.47
Consensus pattern (46 bp):
GTTTTCCCCTTTGCTCTCTTACACCGACTTCTCTCTTTCTTCTTCA
Found at i:18935502 original size:14 final size:15
Alignment explanation
Indices: 18935470--18935514 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 15
18935460 TCGACATCCG
18935470 ATTAATATTAATATT
1 ATTAATATTAATATT
*
18935485 -TTAATATT-ATTTT
1 ATTAATATTAATATT
*
18935498 ATTAATA-AAATATT
1 ATTAATATTAATATT
18935512 ATT
1 ATT
18935515 TTATTCTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTAATATTAATATT
Found at i:18937576 original size:31 final size:30
Alignment explanation
Indices: 18937541--18937704 Score: 127
Period size: 31 Copynumber: 5.3 Consensus size: 30
18937531 TAAAGAACAA
* *
18937541 TTATACCGCCATTGTAAAAGGCAGTATAAGG
1 TTATACCTCCATTGTAAAAGGTAGTATAA-G
* ** * * *
18937572 TTATACCTCTA-TACAAAAAGTAG-AGAACAA
1 TTATACCTCCATTGTAAAAGGTAGTA-TA-AG
*
18937602 TTATACCTCCATTGTAAAAGGTAGTGTAAGG
1 TTATACCTCCATTGTAAAAGGTAGTATAA-G
*
18937633 TTATACCTCC-TCTGTAAAAGGTAGTTTACAG
1 TTATACCTCCAT-TGTAAAAGGTAGTATA-AG
* **
18937664 TTATACCTTCATTGTAAAAGGTAGTGCAGAG
1 TTATACCTCCATTGTAAAAGGTAGTATA-AG
18937695 TTATACCTCC
1 TTATACCTCC
18937705 CTAAGAAAAG
Statistics
Matches: 104, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
29 1 0.01
30 21 0.20
31 80 0.77
32 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (30 bp):
TTATACCTCCATTGTAAAAGGTAGTATAAG
Found at i:18937652 original size:61 final size:63
Alignment explanation
Indices: 18937527--18937704 Score: 202
Period size: 61 Copynumber: 2.9 Consensus size: 63
18937517 TTCACTACAG
* * * *
18937527 AAGGTAAAGAACAATTATACCGCCATTGTAAAAGGCAGTATAAGGTTATACCT-CTATACAAA
1 AAGGTAGAGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTATACAAA
* **
18937589 AA-GTAGAGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTCT-GTAA
1 AAGGTAGAGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTATACAAA
*** * * *
18937650 AAGGTAGTTTACAGTTATACCTTCATTGTAAAAGGTAGTG-CAGAGTTATACCTCC
1 AAGGTAGAGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAG-GTTATACCTCC
18937705 CTAAGAAAAG
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
61 52 0.52
62 48 0.48
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (63 bp):
AAGGTAGAGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTATACAAA
Found at i:18937683 original size:62 final size:62
Alignment explanation
Indices: 18937534--18937704 Score: 202
Period size: 62 Copynumber: 2.8 Consensus size: 62
18937524 CAGAAGGTAA
* * *
18937534 AGAACAATTATACCGCCATTGTAAAAGGCAGTATAAGGTTATACCT-CTATACAAAAAGTAG
1 AGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTATACAAAAAGTAG
* ** *
18937595 AGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTCTGTAAAAGGTAG
1 AGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTATACAAAAAGTAG
*** * * *
18937657 TTTACAGTTATACCTTCATTGTAAAAGGTAGTG-CAGAGTTATACCTCC
1 AGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAG-GTTATACCTCC
18937705 CTAAGAAAAG
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
61 45 0.47
62 50 0.53
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (62 bp):
AGAACAATTATACCTCCATTGTAAAAGGTAGTGTAAGGTTATACCTCCTATACAAAAAGTAG
Found at i:18941013 original size:33 final size:34
Alignment explanation
Indices: 18940965--18941051 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 34
18940955 TTGGCTGCTG
* *
18940965 AAAATTTGAACTGTTTGCTGTCAATTTGTGCA-A
1 AAAATTTGAGCTGTTTGCTGCCAATTTGTGCAGA
* * *
18940998 AAAAATTGAGCTGTTTACTGCCAATTTGTGTAGA
1 AAAATTTGAGCTGTTTGCTGCCAATTTGTGCAGA
*
18941032 AAAATTTGAGCTATTTGCTG
1 AAAATTTGAGCTGTTTGCTG
18941052 GTAGTTTGTG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 27 0.60
34 18 0.40
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (34 bp):
AAAATTTGAGCTGTTTGCTGCCAATTTGTGCAGA
Found at i:18941060 original size:34 final size:34
Alignment explanation
Indices: 18940965--18941071 Score: 110
Period size: 34 Copynumber: 3.2 Consensus size: 34
18940955 TTGGCTGCTG
* *
18940965 AAAATTTGAACTGTTTGCT-GTCAATTTGTGCA-A
1 AAAATTTGAGCTGTTTGCTGGT-AATTTGTGTAGA
* * **
18940998 AAAAATTGAGCTGTTTACTGCCAATTTGTGTAGA
1 AAAATTTGAGCTGTTTGCTGGTAATTTGTGTAGA
* * *
18941032 AAAATTTGAGCTATTTGCTGGTAGTTTGTGTAGG
1 AAAATTTGAGCTGTTTGCTGGTAATTTGTGTAGA
18941066 AAAATT
1 AAAATT
18941072 GGACAGCTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
33 25 0.42
34 34 0.58
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (34 bp):
AAAATTTGAGCTGTTTGCTGGTAATTTGTGTAGA
Found at i:18941364 original size:26 final size:25
Alignment explanation
Indices: 18941306--18941368 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
18941296 AAGAAAAAGA
*
18941306 AATAGAAATTAAATGGGCATGACCC
1 AATAGAAAATAAATGGGCATGACCC
* *
18941331 AATAGAAAATAAGTGGGCATGGCCC
1 AATAGAAAATAAATGGGCATGACCC
*
18941356 AATAGGAAATAAA
1 AATAGAAAATAAA
18941369 AATAAATGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.22, T:0.17
Consensus pattern (25 bp):
AATAGAAAATAAATGGGCATGACCC
Found at i:18943910 original size:18 final size:17
Alignment explanation
Indices: 18943887--18943921 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18943877 AAAATAAGTT
18943887 GAAATTACTGTTGAAAAA
1 GAAATTACTGTT-AAAAA
*
18943905 GAAATTATTGTTAAAAA
1 GAAATTACTGTTAAAAA
18943922 TTTTGGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.31
Consensus pattern (17 bp):
GAAATTACTGTTAAAAA
Found at i:18952392 original size:35 final size:33
Alignment explanation
Indices: 18952341--18952443 Score: 120
Period size: 32 Copynumber: 3.1 Consensus size: 33
18952331 GAAAAGTTGG
18952341 TTGTTGGGTTTTGGTTGATCCCAGT-AAAAACCA
1 TTGTTGGGTTTTGGTTGATCCC-GTGAAAAACCA
* * **
18952374 TTGTTGTAGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGTTG--GGTTTTGGTTGATCCCGTGAAAAACCA
*
18952409 CT-TTGGGTTTTGGTTGATCCCGTGAAAAACCA
1 TTGTTGGGTTTTGGTTGATCCCGTGAAAAACCA
18952441 TTG
1 TTG
18952444 CTAAAGGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
32 24 0.43
33 6 0.11
34 4 0.07
35 22 0.39
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (33 bp):
TTGTTGGGTTTTGGTTGATCCCGTGAAAAACCA
Found at i:18956047 original size:19 final size:19
Alignment explanation
Indices: 18956023--18956059 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
18956013 CTCTTAAACT
18956023 TCAAATCATACTCCAATAC
1 TCAAATCATACTCCAATAC
18956042 TCAAATCATACTCCAATA
1 TCAAATCATACTCCAATA
18956060 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (19 bp):
TCAAATCATACTCCAATAC
Found at i:18961684 original size:40 final size:38
Alignment explanation
Indices: 18961588--18961693 Score: 131
Period size: 38 Copynumber: 2.7 Consensus size: 38
18961578 ATAGTCCCCG
* * *
18961588 TGTGCACGATGGGGGGGGATGTACACGATGGCACTGAT
1 TGTGCACGATGTGGGGGGATGTACATGATGGCACAGAT
* * * *
18961626 TGTGCATGATGTGAGGGGATGTACATGATGGCGCCAGCT
1 TGTGCACGATGTGGGGGGATGTACATGATGGC-ACAGAT
18961665 ATGTGCACGATGTGGGGGGATGTACATGA
1 -TGTGCACGATGTGGGGGGATGTACATGA
18961694 GCCGGATGTG
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 28 0.49
39 3 0.05
40 26 0.46
ACGTcount: A:0.22, C:0.14, G:0.41, T:0.24
Consensus pattern (38 bp):
TGTGCACGATGTGGGGGGATGTACATGATGGCACAGAT
Found at i:18965412 original size:35 final size:34
Alignment explanation
Indices: 18965361--18965499 Score: 108
Period size: 35 Copynumber: 4.1 Consensus size: 34
18965351 GAAAAGTTGG
* *
18965361 TTGTTG-GGTTTTGGTTGATCCTG-GTAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCTGTG-AAAAACCA
*
18965394 TTGTTGTAGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGTTG-AGGTTGTGGTTGAGCCTGTGAAAAACCA
* * * *
18965429 CT-TTG-GGTTTTGGTTGATCCCGTGAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCTGTGAAAAACCA
** * *
18965461 TTGCTAAAGGTTGTGGCTGAGCCTG-CAAAAAGCCA
1 TTG-TTGAGGTTGTGGTTGAGCCTGTGAAAAA-CCA
18965496 TTGT
1 TTGT
18965500 AAAAGCTTGG
Statistics
Matches: 83, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
32 24 0.29
33 6 0.07
34 10 0.12
35 42 0.51
36 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (34 bp):
TTGTTGAGGTTGTGGTTGAGCCTGTGAAAAACCA
Found at i:18965455 original size:32 final size:33
Alignment explanation
Indices: 18965362--18965460 Score: 112
Period size: 32 Copynumber: 3.0 Consensus size: 33
18965352 AAAAGTTGGT
*
18965362 TGTTGGGTTTTGGTTGATCCTG-GTAAAAACCAT
1 TGTTGGGTTTTGGTTGATCCTGTG-AAAAACCAC
* * *
18965395 TGTTGTAGGTTGTGGTTGAGCCTTTGAAAAACCAC
1 TGTTG--GGTTTTGGTTGATCCTGTGAAAAACCAC
*
18965430 T-TTGGGTTTTGGTTGATCCCGTGAAAAACCA
1 TGTTGGGTTTTGGTTGATCCTGTGAAAAACCA
18965461 TTGCTAAAGG
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
32 23 0.42
33 5 0.09
34 3 0.05
35 23 0.42
36 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (33 bp):
TGTTGGGTTTTGGTTGATCCTGTGAAAAACCAC
Found at i:18968215 original size:2 final size:2
Alignment explanation
Indices: 18968190--18968229 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
18968180 CCATAGAGAC
* * *
18968190 AT AT AC AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18968230 TCATGAGCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:18973120 original size:60 final size:60
Alignment explanation
Indices: 18973052--18973164 Score: 181
Period size: 60 Copynumber: 1.9 Consensus size: 60
18973042 AAAAAGTTTT
* *
18973052 TTGCTGCAGCGAAATTGTAACCCAAAAACAGAAGGTTTCTCGCTACAGCGAGATTGAATC
1 TTGCTGCAGCGAAATTGCAACCCAAAAACAGAAAGTTTCTCGCTACAGCGAGATTGAATC
* * *
18973112 TTGCTGCAGCGAAATTGCAACCCAGAAACAGAAAGTTTCTCGTTGCAGCGAGA
1 TTGCTGCAGCGAAATTGCAACCCAAAAACAGAAAGTTTCTCGCTACAGCGAGA
18973165 AGATACAGTG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (60 bp):
TTGCTGCAGCGAAATTGCAACCCAAAAACAGAAAGTTTCTCGCTACAGCGAGATTGAATC
Found at i:18973280 original size:21 final size:22
Alignment explanation
Indices: 18973250--18973290 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
18973240 ACCAAAGAGT
18973250 TTCTCACTGCAGCGA-AAATGA
1 TTCTCACTGCAGCGAGAAATGA
*
18973271 TTCTCGCTGCAGCGAGAAAT
1 TTCTCACTGCAGCGAGAAAT
18973291 AGGGCACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (22 bp):
TTCTCACTGCAGCGAGAAATGA
Found at i:18973577 original size:43 final size:43
Alignment explanation
Indices: 18973529--18973638 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 43
18973519 TCACCAGCTC
** * *
18973529 ATGCGCACTCCCTACTCGCACATGGCTGGGTCA-CCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACTGGGCCATCC-CCGGCTT
*
18973572 ATGCGCACTCCCTACTCGCACATAACTGGGCCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACTGGGCCATCCCCGGCTT
*
18973615 ATGCGCACTCCCTACTCACACATA
1 ATGCGCACTCCCTACTCGCACATA
18973639 GCCGAGTCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 58 0.97
44 2 0.03
ACGTcount: A:0.20, C:0.39, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACTGGGCCATCCCCGGCTT
Found at i:18983183 original size:110 final size:110
Alignment explanation
Indices: 18982947--18983166 Score: 305
Period size: 110 Copynumber: 2.0 Consensus size: 110
18982937 ATATGTTAGA
* * * * * *
18982947 ATGGCATGTTTTTGTTAACAATTTTTATTGTAAACAAGTATGGGAATTAGTTTTGATTATTACAT
1 ATGGCATGTTTTTGTTAACATTTTTTATTGTAAACAAGAATGAGAATTAATCTTAATTATTACAT
* * * *
18983012 TTTGATGATGATTTTGATAGTTTGTTTCAATTTCTTTTAGCTTAT
66 TTTGATGAAGATTTTAATAGTTTGTTACAATTTCTTGTAGCTTAT
* * * *
18983057 ATGGCATGTTTTTGTTAACATTTTTTATTGTTAACATGAATGAGAATTAATCTTAATTTTTATAT
1 ATGGCATGTTTTTGTTAACATTTTTTATTGTAAACAAGAATGAGAATTAATCTTAATTATTACAT
*
18983122 TTTGATGAAGATTTTAATAGTTTGTTACAATTTCTTGTAGTTTAT
66 TTTGATGAAGATTTTAATAGTTTGTTACAATTTCTTGTAGCTTAT
18983167 GTATGAATAT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
110 95 1.00
ACGTcount: A:0.28, C:0.06, G:0.15, T:0.51
Consensus pattern (110 bp):
ATGGCATGTTTTTGTTAACATTTTTTATTGTAAACAAGAATGAGAATTAATCTTAATTATTACAT
TTTGATGAAGATTTTAATAGTTTGTTACAATTTCTTGTAGCTTAT
Found at i:18983764 original size:38 final size:38
Alignment explanation
Indices: 18983721--18983799 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
18983711 GATTTAATGT
18983721 TTAAGAAATTTAAGGTATATGTTTAATATTCAATTAAA
1 TTAAGAAATTTAAGGTATATGTTTAATATTCAATTAAA
18983759 TTAAGAAATTTAAGGTATATGTTTAATATTCAATTAAA
1 TTAAGAAATTTAAGGTATATGTTTAATATTCAATTAAA
18983797 TTA
1 TTA
18983800 TAACTTTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (38 bp):
TTAAGAAATTTAAGGTATATGTTTAATATTCAATTAAA
Found at i:18985959 original size:38 final size:38
Alignment explanation
Indices: 18985903--18986011 Score: 164
Period size: 38 Copynumber: 2.9 Consensus size: 38
18985893 TAGGGTGCAC
* *
18985903 CAATTGTCCAAGCGTGATGAGGACTATACCATTGCTTA
1 CAATTGTCCAAGCATGATGAGGACTATACCATCGCTTA
*
18985941 CAATTGTCCAAGCATGATGGGGACTATACCATCGCTTA
1 CAATTGTCCAAGCATGATGAGGACTATACCATCGCTTA
* * *
18985979 CACTTGTCCAAGCATGATGTGGACTATAACATC
1 CAATTGTCCAAGCATGATGAGGACTATACCATC
18986012 ATCACTAGCT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (38 bp):
CAATTGTCCAAGCATGATGAGGACTATACCATCGCTTA
Found at i:18990300 original size:19 final size:19
Alignment explanation
Indices: 18990276--18990313 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
18990266 CCATTTGACT
18990276 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
18990295 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
18990314 GTTTAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:18996412 original size:67 final size:67
Alignment explanation
Indices: 18996341--18996497 Score: 228
Period size: 67 Copynumber: 2.3 Consensus size: 67
18996331 AGCTGATCCC
*
18996341 GTGAAAAACCATTGTTG-TAGGTTATGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGAG
1 GTGAAAAACCATTG-TGAAAGGTTATGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGAG
18996405 CTT
65 CTT
* *
18996408 GTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATC
1 GTGAAAAACCATTGTGAAAGGTTATGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGAGC
**
18996473 CC
66 TT
*
18996475 GAT-AAAAACCATTATGAAAGGTT
1 G-TGAAAAACCATTGTGAAAGGTT
18996498 TTGGCTAAGC
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
66 2 0.02
67 79 0.96
68 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (67 bp):
GTGAAAAACCATTGTGAAAGGTTATGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGAGC
TT
Found at i:18996413 original size:32 final size:33
Alignment explanation
Indices: 18996342--18996470 Score: 149
Period size: 32 Copynumber: 3.8 Consensus size: 33
18996332 GCTGATCCCG
* *
18996342 TGAAAAACCATTGTTGTAGGTTATGGTTGAGCCTT
1 TGAAAAACCACT-TTG-AGGTTTTGGTTGAGCCTT
18996377 TGAAAAACCACTTTG-GGTTTTGGTTGAG-CTT
1 TGAAAAACCACTTTGAGGTTTTGGTTGAGCCTT
*
18996408 GTGAAAAACCA-TTGTGAAAGGTTGTGGTTGAGCCTT
1 -TGAAAAACCACTT-TG--AGGTTTTGGTTGAGCCTT
18996444 TGAAAAACCACTTTG-GGTTTTGGTTGA
1 TGAAAAACCACTTTGAGGTTTTGGTTGA
18996471 TCCCGATAAA
Statistics
Matches: 83, Mismatches: 4, Indels: 17
0.80 0.04 0.16
Matches are distributed among these distances:
31 5 0.06
32 35 0.42
34 3 0.04
35 35 0.42
36 5 0.06
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.36
Consensus pattern (33 bp):
TGAAAAACCACTTTGAGGTTTTGGTTGAGCCTT
Found at i:19001300 original size:20 final size:21
Alignment explanation
Indices: 19001261--19001303 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
19001251 GATATTGAGA
19001261 ATGAATAATGAATGCTTGATG
1 ATGAATAATGAATGCTTGATG
* *
19001282 ATGATTAAT-AATTCTTGATG
1 ATGAATAATGAATGCTTGATG
19001302 AT
1 AT
19001304 AATTGAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.40
Consensus pattern (21 bp):
ATGAATAATGAATGCTTGATG
Found at i:19009399 original size:13 final size:15
Alignment explanation
Indices: 19009368--19009399 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
19009358 GGGTGCATAA
19009368 ACACTATGATTTTTC
1 ACACTATGATTTTTC
19009383 ACACT-TGATTTTT-
1 ACACTATGATTTTTC
19009396 ACAC
1 ACAC
19009400 CATAAATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.24
14 8 0.47
15 5 0.29
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (15 bp):
ACACTATGATTTTTC
Found at i:19016919 original size:42 final size:42
Alignment explanation
Indices: 19016867--19016983 Score: 173
Period size: 42 Copynumber: 2.8 Consensus size: 42
19016857 CATCTCATAT
*
19016867 GCAACGGCTTATGCGCACTCCCACTCGCACATAGTCGA-GTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAG-CGAGGTCA
* * *
19016909 GCAACAGCTTATGTGCACTTCCACTCGCACATAGCTAGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCGAGGTCA
*
19016951 GCAACGGCTTATGTGCACTCCTACTCGCACATA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATA
19016984 ACAAGGTCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 2 0.03
42 65 0.97
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAGCGAGGTCA
Found at i:19017750 original size:3 final size:3
Alignment explanation
Indices: 19017742--19017768 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
19017732 AACATGAGAG
19017742 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
19017769 CAAGCTGCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:19023554 original size:25 final size:25
Alignment explanation
Indices: 19023500--19023556 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
19023490 ATTTTCTTAT
* *
19023500 AAAATAATTTTTTTAGAGTTAAACG
1 AAAATAATTTTTTCAGAGTAAAACG
* *
19023525 TAAATAATTTTTTCAGTGTAAAA-G
1 AAAATAATTTTTTCAGAGTAAAACG
19023549 CAAAATAA
1 -AAAATAA
19023557 ATTCATACAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (25 bp):
AAAATAATTTTTTCAGAGTAAAACG
Found at i:19044477 original size:28 final size:27
Alignment explanation
Indices: 19044438--19044491 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
19044428 GTGTCCTGGT
* *
19044438 GGTGGAAAATTACGATTTTGCCCCTAA
1 GGTGGAAAATTACCATTTTACCCCTAA
19044465 GGTGGCAAAATTACCATTTTACCCCTA
1 GGTGG-AAAATTACCATTTTACCCCTA
19044492 TGCTCCGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACCATTTTACCCCTAA
Found at i:19045703 original size:13 final size:13
Alignment explanation
Indices: 19045664--19045706 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
19045654 GGAGAAGAAA
19045664 AAAGACAAGAAGAG
1 AAAGACAA-AAGAG
19045678 AAAG-CAAAA-AG
1 AAAGACAAAAGAG
*
19045689 AAAGATAAAAGAG
1 AAAGACAAAAGAG
19045702 AAAGA
1 AAAGA
19045707 AGAAAAATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 6 0.23
12 6 0.23
13 10 0.38
14 4 0.15
ACGTcount: A:0.70, C:0.05, G:0.23, T:0.02
Consensus pattern (13 bp):
AAAGACAAAAGAG
Found at i:19067581 original size:19 final size:18
Alignment explanation
Indices: 19067557--19067611 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
19067547 GCTTTTCAAG
19067557 TATTAGGGTTTTAGGGTTA
1 TATTAGGGTTTT-GGGTTA
* *
19067576 TATTAGGTGTTTTGCGTTT
1 TATTAGG-GTTTTGGGTTA
*
19067595 TATTAGGATTTTGGGTT
1 TATTAGGGTTTTGGGTT
19067612 TAGTTATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 8 0.26
19 18 0.58
20 5 0.16
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (18 bp):
TATTAGGGTTTTGGGTTA
Found at i:19072760 original size:2 final size:2
Alignment explanation
Indices: 19072755--19072793 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
19072745 TATAAAATAC
19072755 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19072794 ACATATGCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19072877 original size:32 final size:34
Alignment explanation
Indices: 19072841--19072907 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
19072831 CACATCTCTA
*
19072841 AATATG-GAGCATATCATTATCCCTAG-ATCTCC
1 AATATGAGAGCATATCATCATCCCTAGTATCTCC
* *
19072873 AATATGAGGGCATATCATCATCCTTAGTATCTCC
1 AATATGAGAGCATATCATCATCCCTAGTATCTCC
19072907 A
1 A
19072908 GAGGTCATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 6 0.20
33 17 0.57
34 7 0.23
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (34 bp):
AATATGAGAGCATATCATCATCCCTAGTATCTCC
Found at i:19073171 original size:36 final size:35
Alignment explanation
Indices: 19073123--19073208 Score: 91
Period size: 36 Copynumber: 2.4 Consensus size: 35
19073113 GAACCGATGC
* * *
19073123 AGAATCAAATCACGTTCAGGGCAAAGCCACTAGCAG
1 AGAA-CAAATCACGCTCAGGCCAAAGCAACTAGCAG
* * * *
19073159 AGAAACAGATCACGCTCATGCCAAAGCAACTGGCGG
1 AG-AACAAATCACGCTCAGGCCAAAGCAACTAGCAG
19073195 AGAACAAATCACGC
1 AGAACAAATCACGC
19073209 ACAACACCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
35 11 0.27
36 28 0.68
37 2 0.05
ACGTcount: A:0.40, C:0.27, G:0.22, T:0.12
Consensus pattern (35 bp):
AGAACAAATCACGCTCAGGCCAAAGCAACTAGCAG
Found at i:19073219 original size:36 final size:37
Alignment explanation
Indices: 19073144--19073262 Score: 100
Period size: 36 Copynumber: 3.3 Consensus size: 37
19073134 ACGTTCAGGG
* * * * * **
19073144 CAAAGCCACTAGCAGAGAAACAGATCACGCTC-ATGC
1 CAAAGCAACTGGCAAAGAAATAGATCACGCACAACAC
**
19073180 CAAAGCAACTGGCGGAGAACA-A-ATCACGCACAACAC
1 CAAAGCAACTGGCAAAGAA-ATAGATCACGCACAACAC
* * *
19073216 CAAAGTAGCTGGCAAAGAAATAGATCACGCACAACGC
1 CAAAGCAACTGGCAAAGAAATAGATCACGCACAACAC
19073253 CAAAGCAACT
1 CAAAGCAACT
19073263 AACGAAGAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
35 9 0.14
36 35 0.53
37 22 0.33
ACGTcount: A:0.43, C:0.29, G:0.19, T:0.09
Consensus pattern (37 bp):
CAAAGCAACTGGCAAAGAAATAGATCACGCACAACAC
Found at i:19073271 original size:37 final size:36
Alignment explanation
Indices: 19073159--19073272 Score: 106
Period size: 37 Copynumber: 3.1 Consensus size: 36
19073149 CCACTAGCAG
* * *
19073159 AGAAACAGATCACGCTC-ATGCCAAAGCAACTGGCGG
1 AGAAA-AGATCACGCACAACGCCAAAGCAACTGGCGA
* * * *
19073195 AGAACAA-ATCACGCACAACACCAAAGTAGCTGGCAA
1 AGAA-AAGATCACGCACAACGCCAAAGCAACTGGCGA
**
19073231 AGAAATAGATCACGCACAACGCCAAAGCAACTAACGA
1 AGAAA-AGATCACGCACAACGCCAAAGCAACTGGCGA
19073268 AGAAA
1 AGAAA
19073273 CAAATCATTG
Statistics
Matches: 61, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
35 9 0.15
36 23 0.38
37 29 0.48
ACGTcount: A:0.46, C:0.26, G:0.19, T:0.09
Consensus pattern (36 bp):
AGAAAAGATCACGCACAACGCCAAAGCAACTGGCGA
Found at i:19075405 original size:21 final size:22
Alignment explanation
Indices: 19075364--19075408 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
19075354 GAAAAGTTTC
19075364 AAAATTACTTCAATGAATTTTG
1 AAAATTACTTCAATGAATTTTG
* *
19075386 AAAATTACTT-TATGATTTTTG
1 AAAATTACTTCAATGAATTTTG
19075407 AA
1 AA
19075409 CTTGTTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (22 bp):
AAAATTACTTCAATGAATTTTG
Found at i:19075447 original size:22 final size:21
Alignment explanation
Indices: 19075401--19075475 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
19075391 TACTTTATGA
* *
19075401 TTTTTGAACTTGTTTGAATAA
1 TTTTTTAACTTGTTTGAATAG
*
19075422 TTTTTTAAGTTGTTTGAATGAG
1 TTTTTTAACTTGTTTGAAT-AG
*
19075444 TTTTTTAACATGTTTGAATAG
1 TTTTTTAACTTGTTTGAATAG
*
19075465 TTTTTAAACTT
1 TTTTTTAACTT
19075476 TTTCAAATAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
21 28 0.61
22 18 0.39
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.55
Consensus pattern (21 bp):
TTTTTTAACTTGTTTGAATAG
Found at i:19075489 original size:43 final size:43
Alignment explanation
Indices: 19075401--19075490 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 43
19075391 TACTTTATGA
* * * * *
19075401 TTTTTGAACTTGTTTGAATAATTTTTTAAGTTGTTTGAATGAG
1 TTTTTGAACATGTTTGAATAATTTTTAAACTTGTTTAAATAAG
* *
19075444 TTTTTTAACATGTTTGAATAGTTTTTAAACTT-TTTCAAATAAG
1 TTTTTGAACATGTTTGAATAATTTTTAAACTTGTTT-AAATAAG
19075487 TTTT
1 TTTT
19075491 AAAGTGCTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 3 0.08
43 36 0.92
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.54
Consensus pattern (43 bp):
TTTTTGAACATGTTTGAATAATTTTTAAACTTGTTTAAATAAG
Found at i:19078610 original size:20 final size:20
Alignment explanation
Indices: 19078587--19078626 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
19078577 ATGGTTCTGC
*
19078587 CCAAAATGTATGGATACATT
1 CCAAAATGTATCGATACATT
19078607 CCAAAATGTATCGATACATT
1 CCAAAATGTATCGATACATT
19078627 TAGTCCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.30
Consensus pattern (20 bp):
CCAAAATGTATCGATACATT
Found at i:19080921 original size:33 final size:34
Alignment explanation
Indices: 19080848--19080921 Score: 96
Period size: 35 Copynumber: 2.2 Consensus size: 34
19080838 AAAGTTAGTG
* * *
19080848 AGGGTTGTGCTTGCTTCGATTAAAAGGCATTTGTA
1 AGGGTTCTGCTTGCTCCCATTAAAAGGCA-TTGTA
*
19080883 AGGGTTCTTCTTGCTCCCATTAAAAGGCA-TGTA
1 AGGGTTCTGCTTGCTCCCATTAAAAGGCATTGTA
19080916 AGGGTT
1 AGGGTT
19080922 TTCACTTGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 10 0.29
35 25 0.71
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (34 bp):
AGGGTTCTGCTTGCTCCCATTAAAAGGCATTGTA
Found at i:19080981 original size:55 final size:56
Alignment explanation
Indices: 19080897--19081003 Score: 180
Period size: 55 Copynumber: 1.9 Consensus size: 56
19080887 TTCTTCTTGC
*
19080897 TCCCATTAAAAGGCATGTAAGGGTTTTCACTTGAG-CTAATAAAAAATGATTATGT
1 TCCCATTAAAAGACATGTAAGGGTTTTCACTTGAGCCTAATAAAAAATGATTATGT
* *
19080952 TCCCATTAAAAGACATGTAAGGGTTTTCACTTGAGCCTAGTAAAAAGTGATT
1 TCCCATTAAAAGACATGTAAGGGTTTTCACTTGAGCCTAATAAAAAATGATT
19081004 GTGAAGGTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 34 0.71
56 14 0.29
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (56 bp):
TCCCATTAAAAGACATGTAAGGGTTTTCACTTGAGCCTAATAAAAAATGATTATGT
Found at i:19086291 original size:43 final size:43
Alignment explanation
Indices: 19086227--19086338 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
19086217 TATTGACTCG
* **
19086227 GCTATGTGCGAGTAGGAAGTGCGCATAAGTCGAGGATGACCC-
1 GCTATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCA
* * *
19086269 GATTATGTGTGAGTAGGGAGTGCGCATAACCCGATGATGACCCA
1 G-CTATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCA
*
19086313 GCCATGTGCGAGTAGGGAGTGCGCAT
1 GCTATGTGCGAGTAGGGAGTGCGCAT
19086339 GAGCTGGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.02
43 57 0.97
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.36, T:0.21
Consensus pattern (43 bp):
GCTATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCA
Found at i:19086350 original size:43 final size:43
Alignment explanation
Indices: 19086230--19086351 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 43
19086220 TGACTCGGCT
* **
19086230 ATGTGCGAGTAGGAAGTGCGCATAAG-TCGAG-GATGACCCGATT
1 ATGTGCGAGTAGGGAGTGCGCATAAGCT-G-GTGATGACCCGACC
* * * *
19086273 ATGTGTGAGTAGGGAGTGCGCATAACCCGATGATGACCC-AGCC
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCGA-CC
*
19086316 ATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGA
19086352 TGATGATGGG
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.02
43 63 0.98
ACGTcount: A:0.25, C:0.17, G:0.37, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCGACC
Found at i:19086661 original size:21 final size:21
Alignment explanation
Indices: 19086632--19086673 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
19086622 TTCATCAGTT
*
19086632 GAATTTCGCTGCAACGAGAAA
1 GAATCTCGCTGCAACGAGAAA
*
19086653 GAATCTCGCTGCAGCGAGAAA
1 GAATCTCGCTGCAACGAGAAA
19086674 CCTTTTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (21 bp):
GAATCTCGCTGCAACGAGAAA
Found at i:19086666 original size:58 final size:59
Alignment explanation
Indices: 19086576--19086743 Score: 169
Period size: 58 Copynumber: 2.8 Consensus size: 59
19086566 GGTGCCCTGT
** * *
19086576 ATTTCGCTGCAGCGAGAATCATTCTCGCTGCAGCGAAAAACTCTGTTTCATCAGTT-GA
1 ATTTCGCTGCAGCGAGAAAGAATCTCGCTGCAGCGAAAAACTCTGTTTCATCAGTTACA
* * * ** **
19086634 ATTTCGCTGCAACGAGAAAGAATCTCGCTGCAGCGAGAAAC-CTTTTATTTTTGGGTTACA
1 ATTTCGCTGCAGCGAGAAAGAATCTCGCTGCAGCGAAAAACTC-TGT-TTCATCAGTTACA
* *
19086694 ATTTCACTGCAGCGAGAAAGAATCTCGCTGCAGTGAAAAACCTTCTGTTT
1 ATTTCGCTGCAGCGAGAAAGAATCTCGCTGCAGCGAAAAA-C-TCTGTTT
19086744 TGATCTCCTA
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
57 1 0.01
58 38 0.43
59 6 0.07
60 37 0.42
61 3 0.03
62 2 0.02
63 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (59 bp):
ATTTCGCTGCAGCGAGAAAGAATCTCGCTGCAGCGAAAAACTCTGTTTCATCAGTTACA
Found at i:19086884 original size:19 final size:19
Alignment explanation
Indices: 19086860--19086909 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
19086850 AGAGGTTTAG
*
19086860 TGAGAAACCCTCGGTCAGT
1 TGAGAAACCCTCGGCCAGT
19086879 TGAGAAACCCTCGGCCAGT
1 TGAGAAACCCTCGGCCAGT
19086898 TGAGAAACCCTC
1 TGAGAAACCCTC
19086910 ATTCGACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.18
Consensus pattern (19 bp):
TGAGAAACCCTCGGCCAGT
Found at i:19089698 original size:38 final size:39
Alignment explanation
Indices: 19089637--19089713 Score: 147
Period size: 38 Copynumber: 2.0 Consensus size: 39
19089627 GCTATATCTT
19089637 ATGTGTAACAAAAAATTTTGGTTTACGTTTTCTTCTTTC
1 ATGTGTAACAAAAAATTTTGGTTTACGTTTTCTTCTTTC
19089676 ATGTGTAAC-AAAAATTTTGGTTTACGTTTTCTTCTTTC
1 ATGTGTAACAAAAAATTTTGGTTTACGTTTTCTTCTTTC
19089714 CTCTAACGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 29 0.76
39 9 0.24
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (39 bp):
ATGTGTAACAAAAAATTTTGGTTTACGTTTTCTTCTTTC
Found at i:19091392 original size:32 final size:30
Alignment explanation
Indices: 19091305--19091399 Score: 75
Period size: 32 Copynumber: 3.0 Consensus size: 30
19091295 GAAAAAATTG
**
19091305 AAAAAAAAGGCCAAGAAAACAAAATAAAAAA
1 AAAAAAAAGAACAA-AAAACAAAATAAAAAA
* ***
19091336 AAAAGAAAGAA-AGAAGAGGGAAAATGAAAAAA
1 AAAAAAAAGAACA-AA-AAACAAAAT-AAAAAA
*
19091368 AAAAAAAAGAACAACAAAACAAAATAACAAA
1 AAAAAAAAGAACAA-AAAACAAAATAAAAAA
19091399 A
1 A
19091400 TGCTTTGATT
Statistics
Matches: 48, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
30 2 0.04
31 21 0.44
32 23 0.48
33 2 0.04
ACGTcount: A:0.77, C:0.07, G:0.13, T:0.03
Consensus pattern (30 bp):
AAAAAAAAGAACAAAAAACAAAATAAAAAA
Found at i:19109481 original size:78 final size:78
Alignment explanation
Indices: 19109379--19109536 Score: 280
Period size: 78 Copynumber: 2.0 Consensus size: 78
19109369 CAAACAGTTC
* *
19109379 AATGAACTGCTGAAAGTTTATAATTTATACATCATTTATTCACTTTATTCTAAAAGAAACGAAGT
1 AATGAACTGCTGAAAGTTTATAATTTATACATCATTTATTCACTTTATTCTAAAAGAAACCAACT
19109444 TAGTATCATAAAA
66 TAGTATCATAAAA
* *
19109457 AATGAACTGCTGAAAGTTTGTAATTTATCCATCATTTATTCACTTTATTCTAAAAGAAACCAACT
1 AATGAACTGCTGAAAGTTTATAATTTATACATCATTTATTCACTTTATTCTAAAAGAAACCAACT
19109522 TAGTATCATAAAA
66 TAGTATCATAAAA
19109535 AA
1 AA
19109537 CATGCATGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.35
Consensus pattern (78 bp):
AATGAACTGCTGAAAGTTTATAATTTATACATCATTTATTCACTTTATTCTAAAAGAAACCAACT
TAGTATCATAAAA
Found at i:19111867 original size:2 final size:2
Alignment explanation
Indices: 19111862--19111892 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
19111852 TTCCCCCCTA
19111862 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
19111893 ACCCACAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:19114471 original size:2 final size:2
Alignment explanation
Indices: 19114466--19114507 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
19114456 CACACATACA
*
19114466 CT CT CT CT CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
19114508 TTATTTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.48, G:0.02, T:0.50
Consensus pattern (2 bp):
CT
Found at i:19119129 original size:21 final size:20
Alignment explanation
Indices: 19119105--19119175 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 20
19119095 TTATTTATTT
19119105 ATTATGAGTTAGAATTTTATA
1 ATTATGAGTTA-AATTTTATA
* *
19119126 ATTAT-ATTTAATTTTTATTTA
1 ATTATGAGTTAAATTTTA--TA
19119147 TTTATTATGAGTTAAAATTTTATA
1 ---ATTATGAGTT-AAATTTTATA
19119171 ATTAT
1 ATTAT
19119176 ATTTAAACCA
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
19 6 0.15
20 4 0.10
21 12 0.31
24 7 0.18
25 3 0.08
26 7 0.18
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTATGAGTTAAATTTTATA
Found at i:19119151 original size:45 final size:45
Alignment explanation
Indices: 19119089--19119181 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
19119079 ATATTTTAAA
*
19119089 TAATTTTTATTTATTTATTATGAGTTAGAATTTTATAATTATATT
1 TAATTTTTATTTATTTATTATGAGTTAAAATTTTATAATTATATT
19119134 TAATTTTTATTTATTTATTATGAGTTAAAATTTTATAATTATATT
1 TAATTTTTATTTATTTATTATGAGTTAAAATTTTATAATTATATT
19119179 TAA
1 TAA
19119182 ACCATATCAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (45 bp):
TAATTTTTATTTATTTATTATGAGTTAAAATTTTATAATTATATT
Found at i:19119516 original size:19 final size:20
Alignment explanation
Indices: 19119483--19119537 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 20
19119473 GATCATGTGA
*
19119483 TTATAT-GATAGTTAAAATT
1 TTATATAGATATTTAAAATT
19119502 CTT-TA-AGATATTT-AAATT
1 -TTATATAGATATTTAAAATT
19119520 TTATATA-ATATTTAAAAT
1 TTATATAGATATTTAAAAT
19119538 GACAACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
17 2 0.07
18 13 0.43
19 13 0.43
20 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (20 bp):
TTATATAGATATTTAAAATT
Found at i:19120852 original size:34 final size:33
Alignment explanation
Indices: 19120785--19120863 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 33
19120775 AATGTCATAC
*
19120785 ATTTTA-TTTTATTTTTTATTATAATATTATAT
1 ATTTTATTTTTATTTTTTAGTATAATATTATAT
* *
19120817 ATTTTATTTTTATTTCTTTAGTATAATTTTTTAT
1 ATTTTATTTTTATTT-TTTAGTATAATATTATAT
*
19120851 ATTATATATTTTA
1 ATTTTAT-TTTTA
19120864 CTTTAATTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
32 6 0.15
33 8 0.20
34 21 0.52
35 5 0.12
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (33 bp):
ATTTTATTTTTATTTTTTAGTATAATATTATAT
Found at i:19120863 original size:27 final size:28
Alignment explanation
Indices: 19120833--19120885 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
19120823 TTTTTATTTC
*
19120833 TTTAGTATAATTT-TTTATA-TTATATAT
1 TTTACTATAATTTCTTT-TACTTATATAT
*
19120860 TTTACTTTAATTTCTTTTACTTATAT
1 TTTACTATAATTTCTTTTACTTATAT
19120886 TATATAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (28 bp):
TTTACTATAATTTCTTTTACTTATATAT
Found at i:19141386 original size:29 final size:29
Alignment explanation
Indices: 19141273--19141393 Score: 127
Period size: 29 Copynumber: 4.2 Consensus size: 29
19141263 TTATACCTTG
* * * *
19141273 TTCTCTTGTACCTATCCACATACATCTTC
1 TTCTTTTGTACCTATTCACGTACAGCTTC
* * * * *
19141302 TTCTTTTGTACTTGTTTATGTACAACTTC
1 TTCTTTTGTACCTATTCACGTACAGCTTC
*
19141331 TTCTTTTGTACCTATTCATGTACAGCTTC
1 TTCTTTTGTACCTATTCACGTACAGCTTC
* *
19141360 TTCTATTGTACCTATTCACGTATAGC-TC
1 TTCTTTTGTACCTATTCACGTACAGCTTC
19141388 TTCTTT
1 TTCTTT
19141394 ATTAGCTTCT
Statistics
Matches: 76, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 7 0.09
29 69 0.91
ACGTcount: A:0.18, C:0.25, G:0.08, T:0.49
Consensus pattern (29 bp):
TTCTTTTGTACCTATTCACGTACAGCTTC
Found at i:19146708 original size:22 final size:22
Alignment explanation
Indices: 19146656--19146709 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
19146646 ATCAACTATT
* *
19146656 TTTA-GAAACTTACCTATATTG
1 TTTAGGAAATTTACCTAAATTG
*
19146677 TTTTGGAAATTTACCTAAATTG
1 TTTAGGAAATTTACCTAAATTG
19146699 TTTAGGAAATT
1 TTTAGGAAATT
19146710 ATGCACCGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 3 0.11
22 25 0.89
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.44
Consensus pattern (22 bp):
TTTAGGAAATTTACCTAAATTG
Found at i:19152531 original size:28 final size:28
Alignment explanation
Indices: 19152500--19152643 Score: 135
Period size: 29 Copynumber: 5.0 Consensus size: 28
19152490 AAATATTTTA
* * *
19152500 TCTTGTTTAAATTGAGACAAATATGTTT
1 TCTTGTCTAAATTAAGACAAACATGTTT
* * * * *
19152528 TCTTGCCTAGATTAAGATAAAAAATATTTT
1 TCTTGTCTAAATTAAGA-CAAACAT-GTTT
* *
19152558 TCTTGTCTTAAATTAAGACATACATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
* *
19152587 TCTTGTCTAAATTAAGTCTAAACATGATT
1 TCTTGTCTAAATTAAGAC-AAACATGTTT
*
19152616 TCTTGTCTAAATTAAGAGAAACATGTTT
1 TCTTGTCTAAATTAAGACAAACATGTTT
19152644 AAGCTGCCAT
Statistics
Matches: 92, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
28 32 0.35
29 38 0.41
30 13 0.14
31 9 0.10
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:19152569 original size:59 final size:58
Alignment explanation
Indices: 19152483--19152602 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 58
19152473 GTCTTTAATA
* * * *
19152483 AAGATAAAAATATTTTATCTTGTTTAAATTGAGACAAATATGTTTTCTTGCCTAGATT
1 AAGATAAAAATATTTTATCTTGTTTAAATTAAGACAAACATATTTTCTTGCCTAAATT
* *
19152541 AAGATAAAAAATATTTT-TCTTGTCTTAAATTAAGACATACATATTTTCTTGTCTAAATT
1 AAGAT-AAAAATATTTTATCTTGT-TTAAATTAAGACAAACATATTTTCTTGCCTAAATT
19152600 AAG
1 AAG
19152603 TCTAAACATG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
58 11 0.20
59 43 0.80
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.42
Consensus pattern (58 bp):
AAGATAAAAATATTTTATCTTGTTTAAATTAAGACAAACATATTTTCTTGCCTAAATT
Found at i:19154343 original size:21 final size:20
Alignment explanation
Indices: 19154317--19154361 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
19154307 TTAAATTAAG
19154317 TTATTTTAG-TTTAATTTTACT
1 TTATTTT-GTTTTAA-TTTACT
19154338 TTATTTTGTTTTTAATTTACT
1 TTATTTTG-TTTTAATTTACT
19154359 TTA
1 TTA
19154362 AGAAGAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.05
21 16 0.73
22 5 0.23
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (20 bp):
TTATTTTGTTTTAATTTACT
Found at i:19155823 original size:39 final size:39
Alignment explanation
Indices: 19155780--19155858 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
19155770 TGGACTTACT
*
19155780 ATCTATATTACTTGTTCGATATGTATACTTGCGTGTACA
1 ATCTATATTACTTGTTCGATATGTATACTTGCATGTACA
*
19155819 ATCTATATTACTTGTTTGATATGTATACTTGCATGTACA
1 ATCTATATTACTTGTTCGATATGTATACTTGCATGTACA
19155858 A
1 A
19155859 AATTTTGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (39 bp):
ATCTATATTACTTGTTCGATATGTATACTTGCATGTACA
Found at i:19156897 original size:19 final size:20
Alignment explanation
Indices: 19156860--19156897 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19156850 GTTTAAATGT
19156860 TTATTTTAAGTTATTTATAA
1 TTATTTTAAGTTATTTATAA
*
19156880 TTATTTTATGTT-TTTATA
1 TTATTTTAAGTTATTTATA
19156898 GGAGTAGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TTATTTTAAGTTATTTATAA
Found at i:19158032 original size:55 final size:55
Alignment explanation
Indices: 19157966--19158076 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 55
19157956 TGATGACAAG
* * *
19157966 TGATTCTAGCTATATGTGGTGTGTGAGTGCACATGAGCTGATGA-CTGGTGGATGA
1 TGATTCCAGCTATATGCGGTGTGGGAGTGCACATGAGCTGATGATC-GGTGGATGA
* *
19158021 TGATTCCAGCTATGTGCGGTGTGGGAGTGCACATGAGTTGATGATCGGTGGATGA
1 TGATTCCAGCTATATGCGGTGTGGGAGTGCACATGAGCTGATGATCGGTGGATGA
19158076 T
1 T
19158077 TACATGTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 49 0.98
56 1 0.02
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.32
Consensus pattern (55 bp):
TGATTCCAGCTATATGCGGTGTGGGAGTGCACATGAGCTGATGATCGGTGGATGA
Found at i:19160445 original size:39 final size:40
Alignment explanation
Indices: 19160370--19160458 Score: 126
Period size: 39 Copynumber: 2.2 Consensus size: 40
19160360 ACATTCTCGT
* * * *
19160370 TGCAGCGAGAAACTTTATGTTTTCTGGGTTGCAATTTCGC
1 TGCAGCGAGAAACATTATGATTTCTGGGTAGAAATTTCGC
*
19160410 TGCAGCGAGAAACATTCT-ATTTCTGGGTAGAAATTTCGC
1 TGCAGCGAGAAACATTATGATTTCTGGGTAGAAATTTCGC
19160449 TGCAGCGAGA
1 TGCAGCGAGA
19160459 TTCAATCTCG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 28 0.64
40 16 0.36
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (40 bp):
TGCAGCGAGAAACATTATGATTTCTGGGTAGAAATTTCGC
Found at i:19162726 original size:31 final size:34
Alignment explanation
Indices: 19162687--19162784 Score: 121
Period size: 31 Copynumber: 2.9 Consensus size: 34
19162677 ATCATCATGT
19162687 GTGCACTCCCTACTCGCACACTTTAACATC-T-A
1 GTGCACTCCCTACTCGCACACTTTAACATCATCA
*
19162719 -TGCACTCCCTACTCGCACACTCTAACATCATCA
1 GTGCACTCCCTACTCGCACACTTTAACATCATCA
* *
19162752 TGTGTGCACTCCCTACTTGCACACTTCAACATC
1 ---GTGCACTCCCTACTCGCACACTTTAACATC
19162785 CTCACACAAC
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
31 28 0.50
32 1 0.02
33 1 0.02
37 26 0.46
ACGTcount: A:0.24, C:0.39, G:0.09, T:0.28
Consensus pattern (34 bp):
GTGCACTCCCTACTCGCACACTTTAACATCATCA
Found at i:19162774 original size:37 final size:36
Alignment explanation
Indices: 19162676--19162784 Score: 140
Period size: 37 Copynumber: 3.1 Consensus size: 36
19162666 CATATGCATT
19162676 CATCATCATGTGTGCACTCCCTACTCGCACACTTTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACAC-TTAA
19162713 CATC-T-A----TGCACTCCCTACTCGCACACTCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACT-TAA
*
19162744 CATCATCATGTGTGCACTCCCTACTTGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTT-AA
19162781 CATC
1 CATC
19162785 CTCACACAAC
Statistics
Matches: 63, Mismatches: 1, Indels: 16
0.79 0.01 0.20
Matches are distributed among these distances:
30 1 0.02
31 27 0.43
32 1 0.02
33 1 0.02
35 1 0.02
36 2 0.03
37 30 0.48
ACGTcount: A:0.25, C:0.38, G:0.09, T:0.28
Consensus pattern (36 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTAA
Found at i:19165752 original size:21 final size:21
Alignment explanation
Indices: 19165710--19165752 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
19165700 AGAAATACAA
* *
19165710 CCATAGTAGACTAGAGTTTTT
1 CCATAGTAGACTAGAATATTT
* *
19165731 CCATAGTCGACTATAATATTT
1 CCATAGTAGACTAGAATATTT
19165752 C
1 C
19165753 ACACTTCATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (21 bp):
CCATAGTAGACTAGAATATTT
Found at i:19167043 original size:50 final size:51
Alignment explanation
Indices: 19166953--19167088 Score: 150
Period size: 50 Copynumber: 2.7 Consensus size: 51
19166943 GGTTATTGCT
* * **
19166953 TCCTATGAAAAAGCAAGAAT-CCTTTTTGGATTGTGTGGGTTACCAATTAA
1 TCCTGTGAAAAAGCAAGAATCCCTTTGTGGATTGTAAGGGTTACCAATTAA
* ** *
19167003 TCCTG-GAAAAAGCAAGAATCCCTTTGTGGATTGTAAGGGTTATCGTTTGA
1 TCCTGTGAAAAAGCAAGAATCCCTTTGTGGATTGTAAGGGTTACCAATTAA
* * *
19167053 TCTTGTGAAAAGGCAACAATCCCTGTTGTGGATTGT
1 TCCTGTGAAAAAGCAAGAATCCCT-TTGTGGATTGT
19167089 GTAAAGGTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
49 14 0.19
50 31 0.43
51 16 0.22
52 11 0.15
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (51 bp):
TCCTGTGAAAAAGCAAGAATCCCTTTGTGGATTGTAAGGGTTACCAATTAA
Found at i:19168467 original size:3 final size:3
Alignment explanation
Indices: 19168459--19168511 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
19168449 ATGAATGTCC
19168459 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
19168507 CAA CA
1 CAA CA
19168512 TAAGGGACAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.34, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:19175985 original size:50 final size:51
Alignment explanation
Indices: 19175893--19176036 Score: 139
Period size: 50 Copynumber: 2.8 Consensus size: 51
19175883 ACTTCCTATC
* ** ** * * *
19175893 AAAAAGCAAGAATC-CTTTGTAGATTGTGTGACTTATCACTTGATGCCGT-
1 AAAAAGCAAGAATCTCTTTGTGGATTGTAAGGGTTATCGCTTGATCCCATG
*
19175942 AAAAAGCAAGAATCTCTTTATGGATTGTAAGGGTTATCGCTTGATCCCATG
1 AAAAAGCAAGAATCTCTTTGTGGATTGTAAGGGTTATCGCTTGATCCCATG
* * * *
19175993 GAAAAGAAAGAATCTCGTTGTGGATTATGTAAAGGTTATCGCTT
1 AAAAAGCAAGAATCTCTTTGTGGA-T-TGTAAGGGTTATCGCTT
19176037 CGCGTTAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 14 0.18
50 26 0.34
51 20 0.26
52 1 0.01
53 16 0.21
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (51 bp):
AAAAAGCAAGAATCTCTTTGTGGATTGTAAGGGTTATCGCTTGATCCCATG
Found at i:19181875 original size:35 final size:36
Alignment explanation
Indices: 19181828--19181904 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 36
19181818 CATATCCACC
* *
19181828 AAAAAATCAGCAGCTA-AGCTGCT-ATATTCTTCCTT
1 AAAAAATAAGCAGCCACAGCTGCTCAT-TTCTTCCTT
* *
19181863 CAAAAATAAGCAGCCACAGCTGCTCCTTTCTTCCTT
1 AAAAAATAAGCAGCCACAGCTGCTCATTTCTTCCTT
19181899 AAAAAA
1 AAAAAA
19181905 AATTGGCAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 13 0.37
36 21 0.60
37 1 0.03
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.27
Consensus pattern (36 bp):
AAAAAATAAGCAGCCACAGCTGCTCATTTCTTCCTT
Found at i:19191125 original size:17 final size:18
Alignment explanation
Indices: 19191105--19191142 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
19191095 CTCGGCTATT
19191105 TTTCTCTTT-TTCTTTT-C
1 TTTC-CTTTGTTCTTTTGC
19191122 TTTCCTTTGTTCTTTTGC
1 TTTCCTTTGTTCTTTTGC
19191140 TTT
1 TTT
19191143 TTTTTTGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 11 0.58
18 4 0.21
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTCCTTTGTTCTTTTGC
Found at i:19191400 original size:20 final size:20
Alignment explanation
Indices: 19191375--19191415 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
19191365 TGACTTTTCT
19191375 TCATTCCCATCCAAACCACA
1 TCATTCCCATCCAAACCACA
19191395 TCATTCCCATCCAAACCACA
1 TCATTCCCATCCAAACCACA
19191415 T
1 T
19191416 TCACCCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.44, G:0.00, T:0.22
Consensus pattern (20 bp):
TCATTCCCATCCAAACCACA
Found at i:19191423 original size:20 final size:20
Alignment explanation
Indices: 19191375--19191424 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
19191365 TGACTTTTCT
*
19191375 TCATTCCCATCCAAACCACA
1 TCATCCCCATCCAAACCACA
*
19191395 TCATTCCCATCCAAACCACA
1 TCATCCCCATCCAAACCACA
19191415 TTCA-CCCCAT
1 -TCATCCCCAT
19191425 TCTTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (20 bp):
TCATCCCCATCCAAACCACA
Done.