Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 58 of 93
Found at i:22130018 original size:59 final size:57
Alignment explanation
Indices: 22129916--22130089 Score: 215
Period size: 59 Copynumber: 3.0 Consensus size: 57
22129906 TTAAGACAAC
* * *
22129916 TCTTGTCTTTAATTAAGACAAAAATATTTTATCTTGTCAAAATTGAGACAAAAATGTTT
1 TCTTGTC-TAAATTAAGACAAAAATATTTT-TCTTGTCTAAATTAAGACAAAAATGTTT
* * *
22129975 TCTTGTCTAGATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAAGATATTT
1 TCTTGTCTAAATTAAGAC-AAAAATATTTTTCTTGTC-TAAATTAAGACAAAAATGTTT
* * *
22130034 TGTTGTCTAAATTAAGACCAAACATATTTTT-TTGTCTAAATTAAGACAAACATGTT
1 TCTTGTCTAAATTAAGA-CAAAAATATTTTTCTTGTCTAAATTAAGACAAAAATGTT
22130090 AAAGCTTCCA
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
57 18 0.18
58 21 0.21
59 61 0.60
60 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (57 bp):
TCTTGTCTAAATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACAAAAATGTTT
Found at i:22130055 original size:29 final size:28
Alignment explanation
Indices: 22129916--22130083 Score: 192
Period size: 29 Copynumber: 5.8 Consensus size: 28
22129906 TTAAGACAAC
*
22129916 TCTTGTCTTTAATTAAGACAAAAATATTTT
1 TCTTGTC-TAAATTAAGACAAAAATA-TTT
* * *
22129946 ATCTTGTCAAAATTGAGACAAAAATGTTT
1 -TCTTGTCTAAATTAAGACAAAAATATTT
*
22129975 TCTTGTCTAGATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAAAATA-TTT
*
22130005 TCTTGTCTTAAATTAAGACAAAGATATTT
1 TCTTGTC-TAAATTAAGACAAAAATATTT
* *
22130034 TGTTGTCTAAATTAAGACCAAACATATTT
1 TCTTGTCTAAATTAAGA-CAAAAATATTT
*
22130063 TTTTGTCTAAATTAAGACAAA
1 TCTTGTCTAAATTAAGACAAA
22130084 CATGTTAAAG
Statistics
Matches: 120, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
28 29 0.24
29 44 0.37
30 30 0.25
31 17 0.14
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAAAATATTT
Found at i:22137268 original size:20 final size:20
Alignment explanation
Indices: 22137242--22137287 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
22137232 AATCTTACTT
* *
22137242 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
22137263 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
22137284 TTTT
1 TTTT
22137288 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:22137289 original size:22 final size:22
Alignment explanation
Indices: 22137247--22137287 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22137237 TACTTTTTTT
*
22137247 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22137269 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22137288 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22141738 original size:37 final size:37
Alignment explanation
Indices: 22141695--22141813 Score: 161
Period size: 37 Copynumber: 3.2 Consensus size: 37
22141685 TGATGTTGGG
22141695 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACAGA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACAGA
* *
22141732 TGATGATGTT-AGAGTGTGTGAGTAGGGAGTGCACACA
1 TGATGATGTTGA-AGTGTGCGAGTAGGGAGTGCACAGA
* * *
22141769 TGACGATGTTGAGGTGTGCAAGTAGGGAGTGCACACG-
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACA-GA
22141806 TGATGATG
1 TGATGATG
22141814 ATATTGCATT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
36 1 0.01
37 69 0.97
38 1 0.01
ACGTcount: A:0.26, C:0.09, G:0.39, T:0.25
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACAGA
Found at i:22144223 original size:34 final size:34
Alignment explanation
Indices: 22144150--22144224 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
22144140 TTTGGCTGCT
22144150 GAAAATTAGAACTGTTTGCTGCCAATTTGTGCAA
1 GAAAATTAGAACTGTTTGCTGCCAATTTGTGCAA
* ** * *
22144184 AAAAATTAGAACTGTTTGCTGGTAGTTTGTGCAG
1 GAAAATTAGAACTGTTTGCTGCCAATTTGTGCAA
22144218 GAAAATT
1 GAAAATT
22144225 TGACAGCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (34 bp):
GAAAATTAGAACTGTTTGCTGCCAATTTGTGCAA
Found at i:22144249 original size:24 final size:22
Alignment explanation
Indices: 22144218--22144274 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
22144208 GTTTGTGCAG
22144218 GAAAATTTGACAGCTTTG-TGCT
1 GAAAATTTGA-AGCTTTGTTGCT
*
22144240 GCCAAAATTTAGAAGTTTTGTTGCT
1 G--AAAATTT-GAAGCTTTGTTGCT
22144265 GAAAATTTGA
1 GAAAATTTGA
22144275 GTTGGAAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
22 3 0.10
23 7 0.23
24 13 0.43
25 7 0.23
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (22 bp):
GAAAATTTGAAGCTTTGTTGCT
Found at i:22146564 original size:22 final size:22
Alignment explanation
Indices: 22146536--22146623 Score: 122
Period size: 22 Copynumber: 4.0 Consensus size: 22
22146526 TTAGAGTGGT
* *
22146536 ATCAGAGCTTTTGGTTTTAAAA
1 ATCAGAGCTTTTGATTTTAAAG
22146558 ATCAGAGCTTTTGATTTTAAAG
1 ATCAGAGCTTTTGATTTTAAAG
*
22146580 ATCAAAGCTTTTGATTTTAAAG
1 ATCAGAGCTTTTGATTTTAAAG
* **
22146602 ATTAGAGCTTTTGGGTTTAAAG
1 ATCAGAGCTTTTGATTTTAAAG
22146624 TTGTTTTAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 59 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (22 bp):
ATCAGAGCTTTTGATTTTAAAG
Found at i:22146633 original size:11 final size:11
Alignment explanation
Indices: 22146617--22146644 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22146607 AGCTTTTGGG
22146617 TTTAAAGTTGT
1 TTTAAAGTTGT
22146628 TTTAAAGTTGT
1 TTTAAAGTTGT
22146639 TTTAAA
1 TTTAAA
22146645 AACTACAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (11 bp):
TTTAAAGTTGT
Found at i:22151075 original size:38 final size:39
Alignment explanation
Indices: 22151033--22151135 Score: 145
Period size: 38 Copynumber: 2.6 Consensus size: 39
22151023 ATAGTGCATG
* * *
22151033 TGTGCACGATGTAGGGGGATGTACACGATGGCACTGGC-
1 TGTGCACGATGTGGGGGGATGCACACGATGACACTGGCA
* *
22151071 TGTGCACAATGTGGGGGGATGCACACGATGACTCTGGCTA
1 TGTGCACGATGTGGGGGGATGCACACGATGACACTGGC-A
22151111 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
22151136 TGAGCTGGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 33 0.58
40 24 0.42
ACGTcount: A:0.21, C:0.18, G:0.39, T:0.21
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGATGACACTGGCA
Found at i:22157085 original size:18 final size:18
Alignment explanation
Indices: 22157051--22157097 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
22157041 TCCATGTGCT
*
22157051 TATATAT-TATGTTAATA
1 TATATATATATGTAAATA
22157068 TATATATATATGTAAATA
1 TATATATATATGTAAATA
22157086 TATGAT-TATATG
1 TAT-ATATATATG
22157098 ATATGTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.26
18 18 0.67
19 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (18 bp):
TATATATATATGTAAATA
Found at i:22157116 original size:22 final size:22
Alignment explanation
Indices: 22157070--22157118 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
22157060 TGTTAATATA
*
22157070 TATATATATGTAAATATATGAT
1 TATATATATGTAAATATAAGAT
*
22157092 TATATGATATGTAATTATAAG-T
1 TATAT-ATATGTAAATATAAGAT
22157114 TATAT
1 TATAT
22157119 TTTGTGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (22 bp):
TATATATATGTAAATATAAGAT
Found at i:22164086 original size:232 final size:230
Alignment explanation
Indices: 22163631--22165538 Score: 1606
Period size: 232 Copynumber: 8.4 Consensus size: 230
22163621 ATCCTTTGAC
* * * **
22163631 ATAATTCATTTATAATCTTAT-AA-GATTATGACT-AGAAAATGAACCGAAAGCTTTGTTGTTCT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCA-AAAATAAATTGAAAGCTTTGTTGTTCT
* * * * * * *
22163693 TAGTTACAACTTATCGTAATTGGATGTTTGCATT-GAGAAATATGAAATGTATGCCATTCATTGA
65 TGGTTAAAACATATCATAATTGGATGTTTGCATTGGA-AAACATGAAATGGATGCTATTCATTGA
* * * ** * * * *
22163757 CATGAAAAGAGCATTTAAAGTTTATCATGCCTTTGAAAACCTAAAATGCTTTATCAATGAGTAAT
129 CAAGAAAAGAGCATTTTAAGTTTATCATGCCTTCG--AAGTTGAAATGGTTTATCAACGAATAAT
* *
22163822 TATCATTTTGATAACATATTTTCATCAATATTAAGATAT
192 TATCATTTTGATAACATATTATCATCAATATTATGATAT
* * * * * *
22163861 GTAATTCATTTATAATATTTTAAATAATTATAAATCTAAAATAAATTGAAAGCTTTGTTGTCCTT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCTT
* * * *
22163926 GGTTAAAACATATTATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCTA-TCTATTGAC
66 GGTTAAAACATATCATAATTGGATGTTTGCATTGGAAAACATGAAATGGATGCTATTC-ATTGAC
* * * * * *
22163990 AAGAAAGGAGCATTTTAGGTTCATCGTGCCTTCGATAGTTCGAAATGGTTTATCAACAAATAAAT
130 AAGAAAAGAGCATTTTAAGTTTATCATGCCTTCGA-AGTT-GAAATGGTTTATCAACGAATAATT
* *
22164055 ATCATTTTGATAATATATTATCATTAATATTATGATAT
193 ATCATTTTGATAACATATTATCATCAATATTATGATAT
* ** * * * ** * *
22164093 ATGATTTGTTTCTAATCTTATAAATGATTATAAATCGAAAATAACTCAAAAGATTTGTTGTTCAT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCTT
* * * * *
22164158 GGTTTAAACCTAACATAATTGGATGTTTG--TTGCGTGAAACAGGAAATGGATGCTATTCATTGA
66 GGTTAAAACATATCATAATTGGATGTTTGCATTG-G-AAAACATGAAATGGATGCTATTCATTGA
* * * * * * * * *
22164221 CAAAAAAATACCAATTAAAGTTTATCATGCCTTAGAATGCTTGAATTGATTTATCAATGAATAAT
129 CAAGAAAAGAGCATTTTAAGTTTATCATGCCTTCGAA-G-TTGAAATGGTTTATCAACGAATAAT
* *
22164286 TATCATTTTGATAACATATTATTATCAATATTTTGATAT
192 TATCATTTTGATAACATATTATCATCAATATTATGATAT
* * * ** *
22164325 ATAATTCATTTGTAATCTTTTAAATGATTATAAATCAAAAATAAATTGATAGGATTGTTGTTCAT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCTT
* * *
22164390 GGTTAAAGCCA-ATCATAATTAGATGTTTGCATT--AAGAA-ATGAGAAGTGGATGCTATCCATT
66 GGTTAAA-ACATATCATAATTGGATGTTTGCATTGGAA-AACATGA-AA-TGGATGCTATTCATT
* * * * * *
22164451 GACAAGTAAAGAGCATTTTAAATTTATTATGCTTTCGAAGGCTTAAAATGGTTTATCAAGGAATA
127 GACAAGAAAAGAGCATTTTAAGTTTATCATGCCTTCGAA-G-TTGAAATGGTTTATCAACGAATA
*
22164516 ATTATCATTTTGAT-A-ATATTATCATCTATATTATGATAT
190 ATTATCATTTTGATAACATATTATCATCAATATTATGATAT
* * * * ** * *
22164555 CTAATTCATTTATAATC-TATAAATGATTATAAATCGAAAGTAAATAGTTAGCTTTATTGTTATT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCTT
* * * * * *
22164619 AGATAAAACCTATCATAATTGGATGTTTGCATTGGGAAACAAG-AA--G-TGCCATTCATTGACA
66 GGTTAAAACATATCATAATTGGATGTTTGCATTGGAAAACATGAAATGGATGCTATTCATTGACA
* * * * * *
22164680 AGAAAAAAGCACTTTAAGTTTATCATGCCTTTGTAAACTTGAATTGG-TTATCAACAAATAATTA
131 AGAAAAGAGCATTTTAAGTTTATCATGCCTTCG--AAGTTGAAATGGTTTATCAACGAATAATTA
*
22164744 TCATTTTAATAACATATTATCATCAATATTATGATATAT
194 TCATTTTGATAACATATTATCATCAATATTATG--ATAT
* *
22164783 ATAATTCATTTATAATCTTATAAATGACTATAAATCAAAAATAAATTGACAA-CTTTGTTGTTAT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGA-AAGCTTTGTTGTTCT
* * * * * *
22164847 TGGTTAAAAGC-TATCACAATTAGATGTTTGCAATGGAAAACGTGAAGTGGTTGCTATTCATTGA
65 TGGTTAAAA-CATATCATAATTGGATGTTTGCATTGGAAAACATGAAATGGATGCTATTCATTGA
* * * * * * * * *
22164911 CAAGAAAAGAGCATTTAAAGCTTATCGTGTCTTCAAAAACTTGAAATGCTGTATC-ACTAATGAA
129 CAAGAAAAGAGCATTTTAAGTTTATCATGCCTTC--GAAGTTGAAATGGTTTATCAACGAAT-AA
*
22164975 TTATC-CTTTGATAACATATTATCATCAATATTATGATAT
191 TTATCATTTTGATAACATATTATCATCAATATTATGATAT
* * *
22165014 ATAATTCATTTATAATATTATAAATTATTGTAAATCAAAAAATAAATT-AAAGGCTTTGTTGTTC
1 ATAATTCATTTATAATCTTATAAATGATTATAAATC-AAAAATAAATTGAAA-GCTTTGTTGTTC
* * * *
22165078 TTAGTTAAAACATATCAAAATTGGATGTTAT--ATTGGACAACATGAAATGGATGCTATCCATTG
64 TTGGTTAAAACATATCATAATTGGATGTT-TGCATTGGAAAACATGAAATGGATGCTATTCATTG
* * * * * * *
22165141 ACAAGAAAATAGCATTTTAGGTTTA-CATGACTTCGATAGCTTGAAATGGCTTATCGACTAATAG
128 ACAAGAAAAGAGCATTTTAAGTTTATCATGCCTTCGA-AG-TTGAAATGGTTTATCAACGAATAA
22165205 TTATCATTTTGATAACATATTATCATCAATATTATGATAT
191 TTATCATTTTGATAACATATTATCATCAATATTATGATAT
* * *
22165245 AT-ATGTC----AT--TCTTAT--A--A--A-CAATCACAAAT-CA---AAAGCTTTGTTGTTCT
1 ATAAT-TCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCT
* * * * * *
22165292 TGGTTAACACCT-TCCATAATTGGATGTTTGAATTAGGAAACGCA--AAAGAGGATGCTA-TCTT
65 TGGTTAAAACATAT-CATAATTGGATGTTTGCATT-GGAAA-ACATGAAA-TGGATGCTATTCAT
* * * * * *
22165353 TAGACAAGAAAAGAGGATTTGAAGTTTATGATGCCTTTG-AG-T----TGGTTTATCCATGAATA
126 T-GACAAGAAAAGAGCATTTTAAGTTTATCATGCCTTCGAAGTTGAAATGGTTTATCAACGAATA
* * * * * *
22165412 CTTATCATTTCGATAACATATTTTTAGCAATAATATGATAT
190 ATTATCATTTTGATAACATATTATCATCAATATTATGATAT
* * * * * *
22165453 ATAATTCATTTATAATCTTGT-ATTGATTATAAATAAAAAATGAATCGAAAACTTTGTTGTTCTT
1 ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCTT
* *
22165517 AGTTAAAACCTATCATAATTGG
66 GGTTAAAACATATCATAATTGG
22165539 TTAAAATAGC
Statistics
Matches: 1349, Mismatches: 254, Indels: 156
0.77 0.14 0.09
Matches are distributed among these distances:
208 52 0.04
209 2 0.00
212 5 0.00
213 35 0.03
214 19 0.01
215 34 0.03
216 10 0.01
217 6 0.00
218 4 0.00
219 1 0.00
220 8 0.01
221 2 0.00
223 1 0.00
224 58 0.04
225 53 0.04
226 20 0.01
227 4 0.00
228 22 0.02
229 137 0.10
230 95 0.07
231 144 0.11
232 534 0.40
233 90 0.07
234 13 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (230 bp):
ATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATTGAAAGCTTTGTTGTTCTT
GGTTAAAACATATCATAATTGGATGTTTGCATTGGAAAACATGAAATGGATGCTATTCATTGACA
AGAAAAGAGCATTTTAAGTTTATCATGCCTTCGAAGTTGAAATGGTTTATCAACGAATAATTATC
ATTTTGATAACATATTATCATCAATATTATGATAT
Found at i:22165057 original size:690 final size:693
Alignment explanation
Indices: 22163683--22165244 Score: 1704
Period size: 690 Copynumber: 2.3 Consensus size: 693
22163673 ACCGAAAGCT
* * * * *
22163683 TTGTTGTTCTTAGTTACAACTTATCGTAATTGGATGTTTGCATTGAGAAAT-ATGAAATGTATGC
1 TTGTTGTTCATAGTTAAAACATATCATAATTGGATGTTTGCATTGAGAAATGA-G-AATGGATGC
* * * * * * *
22163747 CATTCATTGACATGAAAAGAGCA-TTTAAAGTTTATCATGCCTTT-GAAAACCTAAAATGCTTTA
64 TATCCATTGACAAGAAAAGAGCATTTTAAA-TTTATCATGACTTTCG-AAGCTTAAAATGGTTTA
* * * * *
22163810 TCAATGAGTAATTATCATTTTGATAACATATTTTCATCAATATTAAGATATGTAATTCATTTATA
127 TCAACGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATATCTAATTCATTTATA
* * * * * * * * *
22163875 ATATTTTAAATAATTATAAATCTAAAATAAATTGAAAGCTTTGTTGTCCTTGGTTAAAACATATT
192 ATACTATAAATAATTATAAATCGAAAATAAATAGAAAGCTTTATTGTCATTAGATAAAACATATC
* ** *
22163940 ATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCTATCTATTGACAAGAAAGGAGCATTT
257 ATAATTGGATGTTTGCATTAGAAAACAAGAAGTGAA--CTATCTATTGACAAGAAAAAAGCACTT
* * * * * *
22164005 TAGGTTCATCGTGCCTTCGATAGTTCGAAATGGTTTATCAACAAATAAATATCATTTTGATAATA
320 TAAGTTCATCATGCCTTCGAAACTTCGAAATGGTTTATCAACAAATAAATATCATTTTAATAACA
* * * * *
22164070 TATTATCATTAATATTATGATATATGATTTGTTTCTAATCTTATAAATGATTATAAATCGAAAAT
385 TATTATCATCAATATTATGATATATGATTTATTTATAATCTTATAAATGACTATAAATCAAAAAT
* * * * *
22164135 AACTCAAAAGATTTGTTGTTCATGGTTTAAACCTAACATAATTGGATGTTTGTTGCGTGAAACAG
450 AACTCAAAAGATTTGTTGTTCATGGTTAAAACCTAACACAATTAGATGTTTGATGCGTAAAACAG
* * **
22164200 GAAATGGATGCTATTCATTGACAAAAAAATACCAATTAAAGTTTATCATGCCTTAGAATGCTTGA
515 GAAATGGATGCTATTCATTGACAAAAAAAGACCAATTAAAGCTTATCATGCCTTAGAAAACTTGA
* * * * *
22164265 ATTGATTTATCAATGAATAATTATCATTTTGATAACATATTATTATCAATATTTTGATATATAAT
580 AATGATGTATCAATGAATAATTATCACTTTGATAACATATTATCATCAATATTATGATATATAAT
* * * *
22164330 TCATTTGTAATCTTTTAAATGATTATAAATCAAAAATAAATTGATAGG-A
645 TCATTTATAATATTATAAATGATTATAAATCAAAAATAAATT-AAAGGCA
* * * *
22164379 TTGTTGTTCATGGTTAAAGCCA-ATCATAATTAGATGTTTGCATTAAGAAATGAGAAGTGGATGC
1 TTGTTGTTCATAGTTAAA-ACATATCATAATTGGATGTTTGCATTGAGAAATGAGAA-TGGATGC
* *
22164443 TATCCATTGACAAGTAAAGAGCATTTTAAATTTATTATG-CTTTCGAAGGCTTAAAATGGTTTAT
64 TATCCATTGACAAGAAAAGAGCATTTTAAATTTATCATGACTTTCGAA-GCTTAAAATGGTTTAT
* *
22164507 CAAGGAATAATTATCATTTTGAT-A-ATATTATCATCTATATTATGATATCTAATTCATTTATAA
128 CAACGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATATCTAATTCATTTATAA
* * ** * *
22164570 T-CTATAAATGATTATAAATCGAAAGTAAATAGTTAGCTTTATTGTTATTAGATAAAACCTATCA
193 TACTATAAATAATTATAAATCGAAAATAAATAGAAAGCTTTATTGTCATTAGATAAAACATATCA
* * *
22164634 TAATTGGATGTTTGCATTGGGAAACAAGAAGTG--CCAT-TCATTGACAAGAAAAAAGCACTTTA
258 TAATTGGATGTTTGCATTAGAAAACAAGAAGTGAACTATCT-ATTGACAAGAAAAAAGCACTTTA
* * * *
22164696 AGTTTATCATGCCTTTGTAAACTT-GAATTGG-TTATCAACAAATAATTATCATTTTAATAACAT
322 AGTTCATCATGCCTTCG-AAACTTCGAAATGGTTTATCAACAAATAAATATCATTTTAATAACAT
22164759 ATTATCATCAATATTATGATATAT-ATAATTCATTTATAATCTTATAAATGACTATAAATCAAAA
386 ATTATCATCAATATTATGATATATGAT--TT-ATTTATAATCTTATAAATGACTATAAATCAAAA
* * * * * *
22164823 ATAAATTGACAA-CTTTGTTGTT-ATTGGTTAAAAGCTATCACAATTAGATGTTTGCAATG-G-A
448 AT-AACTCAAAAGATTTGTTGTTCA-TGGTTAAAACCTAACACAATTAGATGTTTG--ATGCGTA
* * * * * * *
22164884 AAAC-GTGAAGTGGTTGCTATTCATTGACAAGAAAAGAGCATTTAAAGCTTATCGTGTCTTCA-A
509 AAACAG-GAAATGGATGCTATTCATTGACAAAAAAAGACCAATTAAAGCTTATCATGCCTT-AGA
* *
22164947 AAACTTGAAATGCTGTATCACT-AATGAATTATC-CTTTGATAACATATTATCATCAATATTATG
572 AAACTTGAAATGATGTATCAATGAAT-AATTATCACTTTGATAACATATTATCATCAATATTATG
* * *
22165010 ATATATAATTCATTTATAATATTATAAATTATTGTAAATCAAAAAATAAATTAAAGGCT
636 ATATATAATTCATTTATAATATTATAAATGATTATAAATC-AAAAATAAATTAAAGGCA
* * *
22165069 TTGTTGTTCTTAGTTAAAACATATCAAAATTGGATGTTAT--ATTGGACAACATGA-AATGGATG
1 TTGTTGTTCATAGTTAAAACATATCATAATTGGATGTT-TGCATT-GAGAA-ATGAGAATGGATG
* ** * *
22165131 CTATCCATTGACAAGAAAATAGCATTTTAGGTTTA-CATGAC-TTCGATAGCTTGAAATGGCTTA
63 CTATCCATTGACAAGAAAAGAGCATTTTAAATTTATCATGACTTTCGA-AGCTTAAAATGGTTTA
* * *
22165194 TCGACTAATAGTTATCATTTTGATAACATATTATCATCAATATTATGATAT
127 TCAACGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATAT
22165245 ATATGTCATT
Statistics
Matches: 723, Mismatches: 115, Indels: 62
0.80 0.13 0.07
Matches are distributed among these distances:
687 2 0.00
688 94 0.13
689 160 0.22
690 211 0.29
691 13 0.02
692 2 0.00
693 78 0.11
694 36 0.05
695 9 0.01
696 110 0.15
697 8 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (693 bp):
TTGTTGTTCATAGTTAAAACATATCATAATTGGATGTTTGCATTGAGAAATGAGAATGGATGCTA
TCCATTGACAAGAAAAGAGCATTTTAAATTTATCATGACTTTCGAAGCTTAAAATGGTTTATCAA
CGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATATCTAATTCATTTATAATAC
TATAAATAATTATAAATCGAAAATAAATAGAAAGCTTTATTGTCATTAGATAAAACATATCATAA
TTGGATGTTTGCATTAGAAAACAAGAAGTGAACTATCTATTGACAAGAAAAAAGCACTTTAAGTT
CATCATGCCTTCGAAACTTCGAAATGGTTTATCAACAAATAAATATCATTTTAATAACATATTAT
CATCAATATTATGATATATGATTTATTTATAATCTTATAAATGACTATAAATCAAAAATAACTCA
AAAGATTTGTTGTTCATGGTTAAAACCTAACACAATTAGATGTTTGATGCGTAAAACAGGAAATG
GATGCTATTCATTGACAAAAAAAGACCAATTAAAGCTTATCATGCCTTAGAAAACTTGAAATGAT
GTATCAATGAATAATTATCACTTTGATAACATATTATCATCAATATTATGATATATAATTCATTT
ATAATATTATAAATGATTATAAATCAAAAATAAATTAAAGGCA
Found at i:22166494 original size:16 final size:16
Alignment explanation
Indices: 22166473--22166505 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22166463 AGGAGAGTAA
22166473 GTTAATTGGTGGAGGG
1 GTTAATTGGTGGAGGG
22166489 GTTAATTGGTGGAGGG
1 GTTAATTGGTGGAGGG
22166505 G
1 G
22166506 CATTTTCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.52, T:0.30
Consensus pattern (16 bp):
GTTAATTGGTGGAGGG
Found at i:22167945 original size:60 final size:61
Alignment explanation
Indices: 22167822--22167954 Score: 169
Period size: 60 Copynumber: 2.2 Consensus size: 61
22167812 AGCAAAATCT
* * * * *
22167822 TCTCGCTGTAGCGAGAAACTTTCTATTTTCTGGGTTGCAATTTCGCTGCAGTGAGATTGAA
1 TCTCGCTGCAGCGAGAAACATTCTATTTTCTGGGTAGCAATTTCGCTGCAGCGAGATTCAA
* * *
22167883 TCTCGCTGCAGTGAGAAACATTCTATTTT-TGGGTAGGAATTTTGCTGCAGCGAGATTCAA
1 TCTCGCTGCAGCGAGAAACATTCTATTTTCTGGGTAGCAATTTCGCTGCAGCGAGATTCAA
* *
22167943 TCTTGTTGCAGC
1 TCTCGCTGCAGC
22167955 CAAAAACTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
60 35 0.57
61 26 0.43
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (61 bp):
TCTCGCTGCAGCGAGAAACATTCTATTTTCTGGGTAGCAATTTCGCTGCAGCGAGATTCAA
Found at i:22169257 original size:232 final size:232
Alignment explanation
Indices: 22168966--22169627 Score: 738
Period size: 231 Copynumber: 2.9 Consensus size: 232
22168956 CTTCAAATTG
* * * * *
22168966 TTTATCAATGAATAATTGTCATTTTGATAACAAATTATCATCGATATTATGAAATATAATTCATT
1 TTTATCAATG-AGAATTATCATTTTGATAACATATTATCATCAATATTATGATATATAATTCATT
*** *
22169031 TATAATCTTATAAATGATTATAAATCAAAAATAAATTGGTACCTTTGTTTTTCTTGGTTAAAACC
65 TATAATCTTATAAATGATTATAAATCAAAAATAAATTAAAAGCTTTGTTTTTCTTGGTTAAAACC
*
22169096 TATCATAATTAGATGTTTGCATTTAG-AAATGA-GAAATGGATGCTATCCAATGACAAGGAAAG-
130 TATCATAATTAGATGTTTGCATTTAGAAAAT-ATGAAATGGATGCTATCCAATGACAAGAAAAGA
* *
22169158 GACATTTAAAGTTTAACATGACTTCAAAAG-CTTGAAATGG
194 G-CATTTAAAGTTCAACATGACTT-AAAAGACTTGAAATGC
* * * *
22169198 TTTATTAGTGA-AAGCTTATCATTTCGATAAGATATTATCATCAATATTATGATATATAATTCAT
1 TTTATCAATGAGAA--TTATCATTTTGATAACATATTATCATCAATATTATGATATATAATTCAT
* * *
22169262 TTATAATCTTAT-AATGATTATAAAT-ACAAAATGAATCAAAAGCTTTGTTGTTCTTGGTTAAAA
64 TTATAATCTTATAAATGATTATAAATCA-AAAATAAATTAAAAGCTTTGTTTTTCTTGGTTAAAA
* ** *
22169325 TCC-ATCATAATTAGATGTTTGCA-TTGGAAAATATGAAATGGATGCTATTTATTGACAAGAAAA
128 -CCTATCATAATTAGATGTTTGCATTTAGAAAATATGAAATGGATGCTATCCAATGACAAGAAAA
* * **
22169388 GAGCATTTAAAGTTCAGCATGCCTTTGAAGACTTGAAATGC
192 GAGCATTTAAAGTTCAACATGACTTAAAAGACTTGAAATGC
* * * * *
22169429 TTTATCAATGAGTAATTATCATTTTAATAACATATTTTCATTAAAATTATGATATATAATTCATC
1 TTTATCAATGAG-AATTATCATTTTGATAACATATTATCATCAATATTATGATATATAATTCATT
* * *
22169494 TATAATCTTTTAAA-GAATTATAAATCAAAAATAAATTAAAAGCTTTG-TTGTCTTTAGTTAAAA
65 TATAATCTTATAAATG-ATTATAAATCAAAAATAAATTAAAAGCTTTGTTTTTC-TTGGTTAAAA
* * * * * * * *
22169557 CCTACCATAATTAGATGTTTGCA-TTGGAAAACT-TGAAGTGGATGGTACCCATTAACAAGTAAA
128 CCTATCATAATTAGATGTTTGCATTTAGAAAA-TATGAAATGGATGCTATCCAATGACAAGAAAA
22169620 GAGCATTT
192 GAGCATTT
22169628 TAGGTTTATC
Statistics
Matches: 365, Mismatches: 49, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
230 10 0.03
231 189 0.52
232 162 0.44
233 4 0.01
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (232 bp):
TTTATCAATGAGAATTATCATTTTGATAACATATTATCATCAATATTATGATATATAATTCATTT
ATAATCTTATAAATGATTATAAATCAAAAATAAATTAAAAGCTTTGTTTTTCTTGGTTAAAACCT
ATCATAATTAGATGTTTGCATTTAGAAAATATGAAATGGATGCTATCCAATGACAAGAAAAGAGC
ATTTAAAGTTCAACATGACTTAAAAGACTTGAAATGC
Found at i:22169657 original size:232 final size:231
Alignment explanation
Indices: 22168835--22169687 Score: 881
Period size: 232 Copynumber: 3.7 Consensus size: 231
22168825 GTGACAATAA
* * * * **
22168835 TAAAAGCTTTGTTG-TCATTGGTTAAAACTTGT-AGTAATT-GAACGTTTTCATTGG-AAACGTG
1 TAAAAGCTTTGTTGTTC-TTGGTTAAAACCTATCA-TAATTAG-ATGTTTGCATTGGAAAATATG
* * * * * * * *
22168896 AAGTGGATGCTAT-CATTTGACAAAAAAAAAAGGATTTTAAGTTTATCATTCCTTTGAAAGCTTC
63 AAATGGATGCTATCCA-TTGAC-AAGAAAAGAGCATTTAAAGTTTATCATACCTTCGAAAGCTTG
* * * * *
22168960 AAATTGTTTATCAATGAATAATTGTCATTTTGATAACAAATTATCATCGATATTATGAAATATAA
126 AAATGGTTTATCAATGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATATATAA
22169025 TTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAAT
191 TTCATTTATAATCTTATAAA-GATTATAAATCAAAAATAAAT
*** * * *
22169067 TGGTACCTTTGTTTTTCTTGGTTAAAACCTATCATAATTAGATGTTTGCATT-TAGAAATGA-GA
1 TAAAAGCTTTGTTGTTCTTGGTTAAAACCTATCATAATTAGATGTTTGCATTGGA-AAAT-ATGA
* * * *
22169130 AATGGATGCTATCCAATGACAAGGAAAG-GACATTTAAAGTTTAACATGA-CTTCAAAAGCTTGA
64 AATGGATGCTATCCATTGACAAGAAAAGAG-CATTTAAAGTTTATCAT-ACCTTCGAAAGCTTGA
* * * * *
22169193 AATGGTTTATTAGTGAA-AGCTTATCATTTCGATAAGATATTATCATCAATATTATGATATATAA
127 AATGGTTTATCAATGAATA-ATTATCATTTTGATAACATATTATCATCAATATTATGATATATAA
* *
22169257 TTCATTTATAATCTTATAATGATTATAAAT-ACAAAATGAAT
191 TTCATTTATAATCTTATAAAGATTATAAATCA-AAAATAAAT
*
22169298 CAAAAGCTTTGTTGTTCTTGGTTAAAATCC-ATCATAATTAGATGTTTGCATTGGAAAATATGAA
1 TAAAAGCTTTGTTGTTCTTGGTTAAAA-CCTATCATAATTAGATGTTTGCATTGGAAAATATGAA
** * * * *
22169362 ATGGATGCTATTTATTGACAAGAAAAGAGCATTTAAAGTTCAGCATGCCTTTG-AAGACTTGAAA
65 ATGGATGCTATCCATTGACAAGAAAAGAGCATTTAAAGTTTATCATACCTTCGAAAG-CTTGAAA
* * * * * *
22169426 TGCTTTATCAATGAGTAATTATCATTTTAATAACATATTTTCATTAAAATTATGATATATAATTC
129 TGGTTTATCAATGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATATATAATTC
* *
22169491 ATCTATAATCTTTTAAAGAATTATAAATCAAAAATAAAT
194 ATTTATAATCTTATAAAG-ATTATAAATCAAAAATAAAT
* *
22169530 TAAAAGCTTTGTTG-TCTTTAGTTAAAACCTACCATAATTAGATGTTTGCATTGGAAAACT-TGA
1 TAAAAGCTTTGTTGTTC-TTGGTTAAAACCTATCATAATTAGATGTTTGCATTGGAAAA-TATGA
* * * * * * * *
22169593 AGTGGATGGTACCCATTAACAAGTAAAGAGCATTTTAGGTTTATCATACCTTCGATAGCTTGAAA
64 AATGGATGCTATCCATTGACAAGAAAAGAGCATTTAAAGTTTATCATACCTTCGAAAGCTTGAAA
* *
22169658 TGGTTTATCAATAAACAATTATCATTTTGA
129 TGGTTTATCAATGAATAATTATCATTTTGA
22169688 AAATAAATCT
Statistics
Matches: 508, Mismatches: 89, Indels: 48
0.79 0.14 0.07
Matches are distributed among these distances:
230 5 0.01
231 189 0.37
232 284 0.56
233 28 0.06
234 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (231 bp):
TAAAAGCTTTGTTGTTCTTGGTTAAAACCTATCATAATTAGATGTTTGCATTGGAAAATATGAAA
TGGATGCTATCCATTGACAAGAAAAGAGCATTTAAAGTTTATCATACCTTCGAAAGCTTGAAATG
GTTTATCAATGAATAATTATCATTTTGATAACATATTATCATCAATATTATGATATATAATTCAT
TTATAATCTTATAAAGATTATAAATCAAAAATAAAT
Found at i:22170304 original size:231 final size:229
Alignment explanation
Indices: 22170036--22170669 Score: 774
Period size: 231 Copynumber: 2.7 Consensus size: 229
22170026 CATCCATTTG
* * * *
22170036 AAAGCTCGAAATTGTTTATCAATGAATAATTATCATTTTGATAACAAATTATCATCGATATTATG
1 AAAGCTTGAAATGGTTTATCAATGAA-AATTATCATTTTGATAACATATTATCATCAATATTATG
* * * *
22170101 AAATATAATTCATTTAGAATCTTATCAATGATTATAAATAAAAAATAAATCGATAGCTTTGTTTT
65 ATATATAATTCATTTACAATCTTAT-AATGATTATAAATAAAAAATAAATCGAAAGCTTTGTTAT
22170166 TCTTGGTTAAAACCTATCATAATTAGATGTTTGCATTTGGAAATGAGAAATGGATGCTAT-CCAA
129 TCTTGGTTAAAACCTATCATAATTAGATGTTTGCATTTGGAAATGAGAAATGGATGCT-TGCCAA
* *
22170230 TGACAAGGAAAGA-CATTTAAAGTTTG-TTATGCCTTCA
193 TGACAAGAAAAGAGCATTTAAAG-TTGATCATGCCTT-A
* *
22170267 AAAGCTTGAAATGGTTTATCAATGAAAACTTATCATTTCGATAAGATATTATCATCAATATTATG
1 AAAGCTTGAAATGGTTTATCAATGAAAA-TTATCATTTTGATAACATATTATCATCAATATTATG
* * * *
22170332 ATATATAATTCATTTATAATCTTATAATGATTATAAATACAAAATGAATCAAAAGCTTTGTTATT
65 ATATATAATTCATTTACAATCTTATAATGATTATAAATAAAAAATAAATCGAAAGCTTTGTTATT
* * * * * *
22170397 CTTGGTTAAAATCC-ATCATAATTAGATGTTTGCATTGGGAATTGTGAAGTGGATGCTTGTCATT
130 CTTGGTTAAAA-CCTATCATAATTAGATGTTTGCATTTGGAAATGAGAAATGGATGCTTGCCAAT
*
22170461 GACAAGAAAAGAGCATTTAAAGTTGATCATGCCTTT
194 GACAAGAAAAGAGCATTTAAAGTTGATCATGCCTTA
** * * * * *
22170497 GTAGACTTGAAATGCTTTATCAATGAGTAATTATCATTTTGATAACATATTTTCATTAAAATTAT
1 AAAG-CTTGAAATGGTTTATCAATGA-AAATTATCATTTTGATAACATATTATCATCAATATTAT
* * * * * * * * *
22170562 GATATATTATTCATCTACAATATTTTAAATAATTATAAATCAAAAATAAATTGAAAACTTTGTTG
64 GATATATAATTCATTTACAATCTTAT-AATGATTATAAATAAAAAATAAATCGAAAGCTTTGTTA
* *
22170627 TCCTTGGTTAAAACCTACCATAATTAGATGTTTGCA-TTGGAAA
128 TTCTTGGTTAAAACCTATCATAATTAGATGTTTGCATTTGGAAA
22170670 ACCTGAAGTG
Statistics
Matches: 346, Mismatches: 48, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
229 1 0.00
230 106 0.31
231 176 0.51
232 63 0.18
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (229 bp):
AAAGCTTGAAATGGTTTATCAATGAAAATTATCATTTTGATAACATATTATCATCAATATTATGA
TATATAATTCATTTACAATCTTATAATGATTATAAATAAAAAATAAATCGAAAGCTTTGTTATTC
TTGGTTAAAACCTATCATAATTAGATGTTTGCATTTGGAAATGAGAAATGGATGCTTGCCAATGA
CAAGAAAAGAGCATTTAAAGTTGATCATGCCTTA
Found at i:22176274 original size:18 final size:18
Alignment explanation
Indices: 22176228--22176274 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
22176218 TTTATGAGAA
*
22176228 AAATATGAATTTATAAAAT
1 AAAT-TGAAATTATAAAAT
*
22176247 AAA-TGGAATTATAAAAT
1 AAATTGAAATTATAAAAT
22176264 AAATTGAAATT
1 AAATTGAAATT
22176275 TTTATAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 15 0.62
18 6 0.25
19 3 0.12
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (18 bp):
AAATTGAAATTATAAAAT
Found at i:22179787 original size:39 final size:40
Alignment explanation
Indices: 22179732--22179824 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
22179722 TGAGATTGAA
* * * * * *
22179732 TCTCGTTGTAGCGAAATTTCTACC-CAGAAACAGAATGTT
1 TCTCGTTGCAGCGAAATTGCAACCAAAAAAACAGAAAGTT
*
22179771 TCTCGTTGCAGTGAAATTGCAACCAAAAAAACAGAAAGTT
1 TCTCGTTGCAGCGAAATTGCAACCAAAAAAACAGAAAGTT
22179811 TCTCGTTGCAGCGA
1 TCTCGTTGCAGCGA
22179825 GAAGATTTAG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 20 0.44
40 25 0.56
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (40 bp):
TCTCGTTGCAGCGAAATTGCAACCAAAAAAACAGAAAGTT
Found at i:22182456 original size:232 final size:231
Alignment explanation
Indices: 22181964--22182886 Score: 785
Period size: 232 Copynumber: 4.0 Consensus size: 231
22181954 GATTGTAAGA
* * ** * * *
22181964 GTTTATCAATGAATAGTTATCATTTTCATATTATATTATCATCAATACTACT-ATATATAACTCT
1 GTTTATCAATGAA-AATTATCATTTTGATAACATATTATCATC-ATATTA-TGATATATAATTCA
* * * *
22182028 TTTATAATCTTATAAATGATT----AT---AAAT-CA-C--AAGCTTTGTTGTTATTGGTTAAAA
63 TTTATAATCTTATAAATGATTACAAATCAAAAATAAATCGAAAGCTTTATTGTTCTTCGTTAAAA
* * * * * * * * * *
22182082 -CTTATAAAAATTGGAAGTTTTCATTAGGAAACGTGAAGTGGATGCAAT-CATTTGACAA--AAA
128 CCTT-TCATAATTAGATGTTTGCATTTGGAAAAGAGAAATGGATGCTATCCA-TTGACAAGGAAA
* * * *
22182143 AGAGCATTTTAAGTTTATCATTCCTTTGAAAGCTTGAAATT
191 AGAGCATTTAAAGTTTATCATGCCTTCGAAAGCTTGAAATG
** * * * *
22182184 GTTTATCAATGAATAATTATTGTTTTGGTAACAAATTATCAACGATATTATGAAATATAATTCAT
1 GTTTATCAATGAA-AATTATCATTTTGATAACATATTATCATC-ATATTATGATATATAATTCAT
* * *
22182249 TTATAATCTTATAAATGATTAGAAATCAAAAATAAATCGATAGCTTTA-TGTTTCTTCATTAAAA
64 TTATAATCTTATAAATGATTACAAATCAAAAATAAATCGAAAGCTTTATTG-TTCTTCGTTAAAA
* * * *
22182313 CCTTTCATAATTAGATGTTTGCATTTGGAAATGAGAAATGGATGCTATCCAATGACAAGGTAAGG
128 CCTTTCATAATTAGATGTTTGCATTTGGAAAAGAGAAATGGATGCTATCCATTGACAAGGAAAAG
* *
22182378 A-CATTTAAAGTTTATTATGCCTTCAAAAGCTTGAAATG
193 AGCATTTAAAGTTTATCATGCCTTCGAAAGCTTGAAATG
* *
22182416 GTTTATCAATGAAAACTTATCATTTCGATAAGATATTATCATCAGTATTATGATATATAATTCAT
1 GTTTATCAATGAAAA-TTATCATTTTGATAACATATTATCATCA-TATTATGATATATAATTCAT
* *
22182481 TTATAA-CTTAT-AATGATTACAAAT-ACAAAATGAATC-AAATGCTTTGTTGTTCTTCGTTAAA
64 TTATAATCTTATAAATGATTACAAATCA-AAAATAAATCGAAA-GCTTTATTGTTCTTCGTTAAA
* *
22182542 A--TTCATCATAATTAGATGTTTGCATTGGGAAACGCA-AAATGGATGCTAGT-CATTGACAA-G
127 ACCTT--TCATAATTAGATGTTTGCATTTGGAAAAG-AGAAATGGATGCTA-TCCATTGACAAGG
* *
22182602 AAAAGAGCATTTAAAGTTGATCATGCCTTTG-AAGACTTGAAA-G
188 AAAAGAGCATTTAAAGTTTATCATGCCTTCGAAAG-CTTGAAATG
* * * * *
22182645 GCTTTGTCAATGAGTAATTATCATTTTGATAACATATTTTCATTAAAATTATGATATATAATTCA
1 G-TTTATCAATGA-AAATTATCATTTTGATAACATATTATCA-TCATATTATGATATATAATTCA
* * * * * *
22182710 TCTATAATCTTTTAAATAATTACAAATCAAAAATAAATTGAAAGCTTTATTGTCCTTGGTTAAAA
63 TTTATAATCTTATAAATGATTACAAATCAAAAATAAATCGAAAGCTTTATTGTTCTTCGTTAAAA
** * * * *
22182775 CCTGCCATAATTAGATG-TTGACA-TTGGAAAAGATGAAGTGGGTGGTACCCATTGAC-AGGAAA
128 CCTTTCATAATTAGATGTTTG-CATTTGGAAAAGA-GAAATGGATGCTATCCATTGACAAGGAAA
* * * * **
22182837 AGAGCATTTTAGGTTTATTATACCTTCGGTAGCTTGAAATG
191 AGAGCATTTAAAGTTTATCATGCCTTCGAAAGCTTGAAATG
22182878 GTTTATCAA
1 GTTTATCAA
22182887 CAAACCATAA
Statistics
Matches: 567, Mismatches: 92, Indels: 76
0.77 0.13 0.10
Matches are distributed among these distances:
219 1 0.00
220 69 0.12
224 2 0.00
227 4 0.01
228 3 0.01
229 14 0.02
230 171 0.30
231 87 0.15
232 203 0.36
233 12 0.02
234 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (231 bp):
GTTTATCAATGAAAATTATCATTTTGATAACATATTATCATCATATTATGATATATAATTCATTT
ATAATCTTATAAATGATTACAAATCAAAAATAAATCGAAAGCTTTATTGTTCTTCGTTAAAACCT
TTCATAATTAGATGTTTGCATTTGGAAAAGAGAAATGGATGCTATCCATTGACAAGGAAAAGAGC
ATTTAAAGTTTATCATGCCTTCGAAAGCTTGAAATG
Found at i:22182855 original size:462 final size:461
Alignment explanation
Indices: 22182052--22182886 Score: 1040
Period size: 462 Copynumber: 1.8 Consensus size: 461
22182042 AATGATTATA
* * * **
22182052 AATCACAAGCTTTGTTGTTATTGGTTAAAACTTATAAAAATTGGAAGTTTTCATTAGGAAACGTG
1 AATCACAAGCTTTGTTGTTATTCGTTAAAACTTATAAAAATTAGAAGTTTGCATTAGGAAACGCA
* * * *
22182117 AAGTGGATGCAATCATTTGACAAAAAAGAGCATTTTAAGTTTATCATTCCTTTGAAAGCTTGAAA
66 AAATGGATGCAATCATTTGACAAAAAAGAGCATTTAAAGTTGATCATGCCTTTGAAAGCTTGAAA
* ** * * *
22182182 TTGTTTATCAATGAATAATTATTGTTTTGGTAACAAATTATCAACGATATTATGAAATATAATTC
131 TGGTTTATCAATGAATAATTATCATTTTGATAACAAATTATCAACAAAATTATGAAATATAATTC
* * * * *
22182247 ATTTATAATCTTATAAATGATTAGAAATCAAAAATAAATCGATAGCTTTATGTTTCTTCATTAAA
196 ATCTATAATCTTATAAATAATTACAAATCAAAAATAAATCGAAAGCTTTATGTTCCTTCATTAAA
** * * * *
22182312 ACCTTTCATAATTAGATGTTTGCATTTGGAAATGAGAAATGGATGCTATCCAATGACAAGGTAAG
261 ACCTGCCATAATTAGATGTTTGCATTTGGAAAAGAGAAATGGATGCTACCCAATGACAAGGAAAA
*
22182377 GACATTTAAAGTTTATTATGCCTTCAAAAGCTTGAAATGGTTTATCAATGAAAACTTATCATTTC
326 GACATTTAAAGTTTATTATACCTTCAAAAGCTTGAAATGGTTTATCAATGAAAACTTATCATTTC
22182442 GATAAGATATTATCATCAGTATTATGATATATAATTCATTTATAACTTATAATGATTACAAATAC
391 GATAAGATATTATCATCAGTATTATGATATATAATTCATTTATAACTTATAATGATTACAAATAC
22182507 AAAATG
456 AAAATG
* * * * *
22182513 AATCA-AATGCTTTGTTGTTCTTCGTTAAAA-TTCATCATAATTAGATGTTTGCATTGGGAAACG
1 AATCACAA-GCTTTGTTGTTATTCGTTAAAACTT-ATAAAAATTAGAAGTTTGCATTAGGAAACG
*
22182576 CAAAATGGATGCTAGTCA-TTGACAAGAAAAGAGCATTTAAAGTTGATCATGCCTTTG-AAGACT
64 CAAAATGGATGC-AATCATTTGACAA-AAAAGAGCATTTAAAGTTGATCATGCCTTTGAAAG-CT
* * * * ** *
22182639 TGAAA-GGCTTTGTCAATGAGTAATTATCATTTTGATAACATATTTTCATTAAAATTATGATATA
126 TGAAATGG-TTTATCAATGAATAATTATCATTTTGATAACAAATTATCAACAAAATTATGAAATA
* *
22182703 TAATTCATCTATAATCTTTTAAATAATTACAAATCAAAAATAAATTGAAAGCTTTAT-TGTCCTT
190 TAATTCATCTATAATCTTATAAATAATTACAAATCAAAAATAAATCGAAAGCTTTATGT-TCCTT
** * * * *
22182767 GGTTAAAACCTGCCATAATTAGATG-TTGACA-TTGGAAAAGATGAAGTGGGTGGTACCCATTGA
254 CATTAAAACCTGCCATAATTAGATGTTTG-CATTTGGAAAAGA-GAAATGGATGCTACCCAATGA
* * ***
22182830 C-AGGAAAAGAGCATTTTAGGTTTATTATACCTTCGGTAGCTTGAAATGGTTTATCAA
317 CAAGGAAAAGA-CATTTAAAGTTTATTATACCTTCAAAAGCTTGAAATGGTTTATCAA
22182887 CAAACCATAA
Statistics
Matches: 311, Mismatches: 53, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
460 4 0.01
461 89 0.29
462 218 0.70
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (461 bp):
AATCACAAGCTTTGTTGTTATTCGTTAAAACTTATAAAAATTAGAAGTTTGCATTAGGAAACGCA
AAATGGATGCAATCATTTGACAAAAAAGAGCATTTAAAGTTGATCATGCCTTTGAAAGCTTGAAA
TGGTTTATCAATGAATAATTATCATTTTGATAACAAATTATCAACAAAATTATGAAATATAATTC
ATCTATAATCTTATAAATAATTACAAATCAAAAATAAATCGAAAGCTTTATGTTCCTTCATTAAA
ACCTGCCATAATTAGATGTTTGCATTTGGAAAAGAGAAATGGATGCTACCCAATGACAAGGAAAA
GACATTTAAAGTTTATTATACCTTCAAAAGCTTGAAATGGTTTATCAATGAAAACTTATCATTTC
GATAAGATATTATCATCAGTATTATGATATATAATTCATTTATAACTTATAATGATTACAAATAC
AAAATG
Found at i:22188277 original size:40 final size:38
Alignment explanation
Indices: 22188222--22188324 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
22188212 ACTCGACACA
*
22188222 TGTGCATCCCCCCACATAGTGCACATAGCCGACGCCATCG
1 TGTGCATCCCCCCACATAGTGCACA-A-CCAACGCCATCG
* *
22188262 TGTGCATCCCCCCACATTA-TGCACAATCAATGCCATCG
1 TGTGCATCCCCCCACA-TAGTGCACAACCAACGCCATCG
* *
22188300 TGTACATCCCCCCACATCGTGCACA
1 TGTGCATCCCCCCACATAGTGCACA
22188325 CGGTCACTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
37 1 0.02
38 30 0.54
39 1 0.02
40 22 0.39
41 2 0.04
ACGTcount: A:0.24, C:0.40, G:0.16, T:0.20
Consensus pattern (38 bp):
TGTGCATCCCCCCACATAGTGCACAACCAACGCCATCG
Found at i:22189264 original size:19 final size:19
Alignment explanation
Indices: 22189223--22189264 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
22189213 GAAGAAGGAG
*
22189223 AAGAAGCTACTGGAGAATG
1 AAGAAGCTACTGGAGAATA
*
22189242 AAGAAGCTGCTGGAAGAA-A
1 AAGAAGCTACTGG-AGAATA
22189261 AAGA
1 AAGA
22189265 TATTTATAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.48, C:0.10, G:0.31, T:0.12
Consensus pattern (19 bp):
AAGAAGCTACTGGAGAATA
Found at i:22195512 original size:40 final size:39
Alignment explanation
Indices: 22195455--22195558 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 39
22195445 ACCCGGCTCA
* *
22195455 TGTGCATCCCCCTACATCGTGCACATATTTGGCGCCATTG
1 TGTGCATCCCCCTACATCGTGCACATA-TTAGCGCCATCG
* *
22195495 TGTGCATCCCCCCACATCGTGCACA-ATTAGTGCCATCG
1 TGTGCATCCCCCTACATCGTGCACATATTAGCGCCATCG
* * *
22195533 TGTACATCCGCCTACATCATGCACAT
1 TGTGCATCCCCCTACATCGTGCACAT
22195559 GGGCACTATC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
38 30 0.55
39 1 0.02
40 24 0.44
ACGTcount: A:0.21, C:0.35, G:0.17, T:0.27
Consensus pattern (39 bp):
TGTGCATCCCCCTACATCGTGCACATATTAGCGCCATCG
Found at i:22197695 original size:19 final size:19
Alignment explanation
Indices: 22197671--22197712 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22197661 CATCTTCTCC
*
22197671 TTCAAGCTCCCACGTCATT
1 TTCAAGCTCCCACGCCATT
* *
22197690 TTCAAGCTTCCATGCCATT
1 TTCAAGCTCCCACGCCATT
22197709 TTCA
1 TTCA
22197713 CCTTGCCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (19 bp):
TTCAAGCTCCCACGCCATT
Found at i:22201206 original size:232 final size:230
Alignment explanation
Indices: 22200392--22201211 Score: 850
Period size: 232 Copynumber: 3.5 Consensus size: 230
22200382 ACGGTCATGT
* * * * * * * * *
22200392 CATAATTGGACGTTTTCATTAGGAAACGTGAAGTGGAGGCTA-TCATTTGACAAAAAAAGAGGAT
1 CATAATTAGATGTTTGCATTTGGAAACATGAAGTGGATGCTACCCA-TTGACAAGAAAAGAGCAT
* * * * *
22200456 TTTAAGTTTATCATTCCTTTGAAAGCTTGAAATTGTTTATCAATGAATAATTATCATTTTGATGA
65 TTAAAGTTTATCATGCC-TTCAAAGCTTGAAATTGTTTATCAATAAATAATTATCATTTTGATAA
* * * * * *
22200521 CAAATTATCATTGACATTATGAAATATAATTCATTTATAATCTTATAAATGATTATAAATTGAAA
129 CATATTATCATTAATATTATGATATATAATTCATTTATAATCTTTTAAATGATTATAAA-TAAAA
* *
22200586 ATAAATTGATAGCTTTGTTTTTCTTGGTTAAAACCTAC
193 ATAAATTGAAAGCTTTGTTGTTCTTGGTTAAAACCTAC
* * *
22200624 CATAATTAGATGTTTGCATTTGGAAACAAGAAATGGATGCTATCCGA-TGACAAGGAAAAGA-CA
1 CATAATTAGATGTTTGCATTTGGAAACATGAAGTGGATGCTA-CCCATTGACAA-GAAAAGAGCA
* * * *
22200687 TTTAAAGTTTATCATGCCTTCAAAAGCTTGAAATGGTTTATTAATGAAA-ACTTATCATTTGGAT
64 TTTAAAGTTTATCATGCCTTC-AAAGCTTGAAATTGTTTATCAAT-AAATAATTATCATTTTGAT
* * *
22200751 AAGATATTATCATAAATATTATGATAAATAATTCATTTATAA--TTTTATAATGATTATAAATAC
127 AACATATTATCATTAATATTATGATATATAATTCATTTATAATCTTTTA-AATGATTATAAATA-
* * * * * *
22200814 AAAATGAA-TCAAAGCTCTATTGTTCTTGGTTAAAATCTAT
190 AAAATAAATTGAAAGCTTTGTTGTTCTTGGTTAAAACCTAC
* * * * * *
22200854 CATAATTAGATATTTGCATTTGGAAGCGTGAAGTGGATGCTATCCATTGACAAGAAAAAAACATT
1 CATAATTAGATGTTTGCATTTGGAAACATGAAGTGGATGCTACCCATTGACAAGAAAAGAGCATT
* * ** * *
22200919 TAAAATTGATCATGCCTTTGAAGACTTGAAA-TGCTTTATCAATAAGTAATTATCATGTTGATAA
66 TAAAGTTTATCATGCCTTCAAAG-CTTGAAATTG-TTTATCAATAAATAATTATCATTTTGATAA
* * *
22200983 CATATTTTCATTAATATTATGATATATAATTCATATATAATCTTTTAAATAATTATAAATCAAAA
129 CATATTATCATTAATATTATGATATATAATTCATTTATAATCTTTTAAATGATTATAAAT-AAAA
* *
22201048 ATAAATTGAAAGCTTTGTTGTCCTCGGTTAAAACCTAC
193 ATAAATTGAAAGCTTTGTTGTTCTTGGTTAAAACCTAC
* *
22201086 CATAATTAAATGTTTGCA-TTGGAAAACATGAAGCGGATTG-TACCCATTGACAAGAAAAGAGCA
1 CATAATTAGATGTTTGCATTTGG-AAACATGAAGTGGA-TGCTACCCATTGACAAGAAAAGAGCA
* * * * * * * *
22201149 TTTTAGGTTTATCATACCTTCAATAGCTAGAAATTGTTTTTCAACAAACAGTTATCATTTTGA
64 TTTAAAGTTTATCATGCCTTCAA-AGCTTGAAATTGTTTATCAATAAATAATTATCATTTTGA
22201212 AAGTAAATCT
Statistics
Matches: 476, Mismatches: 92, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
229 14 0.03
230 157 0.33
231 44 0.09
232 246 0.52
233 14 0.03
234 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (230 bp):
CATAATTAGATGTTTGCATTTGGAAACATGAAGTGGATGCTACCCATTGACAAGAAAAGAGCATT
TAAAGTTTATCATGCCTTCAAAGCTTGAAATTGTTTATCAATAAATAATTATCATTTTGATAACA
TATTATCATTAATATTATGATATATAATTCATTTATAATCTTTTAAATGATTATAAATAAAAATA
AATTGAAAGCTTTGTTGTTCTTGGTTAAAACCTAC
Found at i:22202309 original size:5 final size:5
Alignment explanation
Indices: 22202289--22202339 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
22202279 GAAAAATCAA
* * *
22202289 TTTTC -TTTC ATTTTC TTTTC -TTTG TTTTC TTTTC CTTTC CTTTC TTTTC
1 TTTTC TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
22202338 TT
1 TT
22202340 ACTTCTTTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 7 0.18
5 28 0.72
6 4 0.10
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:22202309 original size:15 final size:14
Alignment explanation
Indices: 22202289--22202339 Score: 66
Period size: 15 Copynumber: 3.5 Consensus size: 14
22202279 GAAAAATCAA
22202289 TTTTCTTTCATTTTC
1 TTTTCTTTC-TTTTC
*
22202304 TTTTCTTTGTTTTC
1 TTTTCTTTCTTTTC
*
22202318 TTTTCCTTTCCTTTC
1 TTTT-CTTTCTTTTC
22202333 TTTTCTT
1 TTTTCTT
22202340 ACTTCTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.38
15 20 0.62
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (14 bp):
TTTTCTTTCTTTTC
Found at i:22203186 original size:49 final size:53
Alignment explanation
Indices: 22203129--22203266 Score: 167
Period size: 55 Copynumber: 2.6 Consensus size: 53
22203119 TAGCAGGGTG
* * * *
22203129 TGTGCGGTGTGGGAGTGCACATG-TC-GGTGAT-GA-AGGGTGATTCCAGCTA
1 TGTGCGGTGTGGGAGTGCACATGAGCTGATGATCGATAGGATGATTCCAACTA
* *
22203178 TGTGCGGTGTGGGAATGCACATGAGCTGATGATCGATTGATGATGATTCCAACTA
1 TGTGCGGTGTGGGAGTGCACATGAGCTGATGATCGA-T-AGGATGATTCCAACTA
*
22203233 TATGCGGTGTGGGAGTGCACATGAGCTGATGATC
1 TGTGCGGTGTGGGAGTGCACATGAGCTGATGATC
22203267 TGGTGGTTGT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
49 22 0.29
50 1 0.01
51 5 0.07
52 2 0.03
55 45 0.60
ACGTcount: A:0.22, C:0.14, G:0.36, T:0.28
Consensus pattern (53 bp):
TGTGCGGTGTGGGAGTGCACATGAGCTGATGATCGATAGGATGATTCCAACTA
Found at i:22205288 original size:21 final size:22
Alignment explanation
Indices: 22205263--22205303 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22205253 CCTAGGTGGA
*
22205263 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
22205284 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
22205304 AAAAAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:22205304 original size:20 final size:21
Alignment explanation
Indices: 22205263--22205307 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
22205253 CCTAGGTGGA
*
22205263 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
22205284 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
22205304 AAAA
1 AAAA
22205308 AAAGTAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:22205308 original size:21 final size:20
Alignment explanation
Indices: 22205261--22205308 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
22205251 ACCCTAGGTG
*
22205261 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
22205281 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
22205303 GAAAAA
1 GAAAAA
22205309 AAGTAAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:22206205 original size:39 final size:40
Alignment explanation
Indices: 22206120--22206205 Score: 92
Period size: 39 Copynumber: 2.2 Consensus size: 40
22206110 GGTTTTTATC
*
22206120 TGATTTTGTGATTTTATAGAAAATGAGTTTAAATGGTAAA
1 TGATTTTATGATTTTATAGAAAATGAGTTTAAATGGTAAA
* *
22206160 T--CTTTATG-TTTTATAAGCAAAATGTGTTTAAAT-G-AAA
1 TGATTTTATGATTTTAT-AG-AAAATGAGTTTAAATGGTAAA
22206197 TGATTTTAT
1 TGATTTTAT
22206206 AAATTGTCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
37 10 0.26
38 8 0.21
39 19 0.50
40 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (40 bp):
TGATTTTATGATTTTATAGAAAATGAGTTTAAATGGTAAA
Found at i:22207160 original size:11 final size:12
Alignment explanation
Indices: 22207132--22207172 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
22207122 ATGGTCGGCC
22207132 ATAAG-GAGAAA
1 ATAAGAGAGAAA
22207143 ATAAGAGAGAAA
1 ATAAGAGAGAAA
22207155 AT-AGAGAGGAAA
1 ATAAGAGA-GAAA
*
22207167 GTAAGA
1 ATAAGA
22207173 AAAGAGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 10 0.38
12 13 0.50
13 3 0.12
ACGTcount: A:0.61, C:0.00, G:0.29, T:0.10
Consensus pattern (12 bp):
ATAAGAGAGAAA
Found at i:22210921 original size:39 final size:39
Alignment explanation
Indices: 22210840--22210970 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
22210830 TGGTGTGCGA
*
22210840 TGTGGGAGAGCACA-CACCGATGATATATGCCA--TGCATGG
1 TGTGGGAGAGCACATGA-CGATGATATATGCCATGTGCA--G
*
22210879 TGTGGGAGAGCACATGATGATGATATATGCCATGTGCAG
1 TGTGGGAGAGCACATGACGATGATATATGCCATGTGCAG
* * * **
22210918 TGTGGGAGTGCACATGAGGAT-AT-TA-GCTATGTGTGG
1 TGTGGGAGAGCACATGACGATGATATATGCCATGTGCAG
*
22210954 TGTGGGAGTGCACATGA
1 TGTGGGAGAGCACATGA
22210971 GCTGAGTTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
36 25 0.30
37 2 0.02
38 2 0.02
39 48 0.59
40 1 0.01
41 4 0.05
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (39 bp):
TGTGGGAGAGCACATGACGATGATATATGCCATGTGCAG
Found at i:22210950 original size:36 final size:39
Alignment explanation
Indices: 22210858--22210971 Score: 130
Period size: 39 Copynumber: 3.0 Consensus size: 39
22210848 AGCACACACC
* *
22210858 GATGATATATGCCA--TGCATGGTGTGGGAGAGCACATGAT
1 GATGATATATGCCATGTGCA--GTGTGGGAGTGCACATGAG
22210897 GATGATATATGCCATGTGCAGTGTGGGAGTGCACATGAG
1 GATGATATATGCCATGTGCAGTGTGGGAGTGCACATGAG
* **
22210936 GAT-AT-TA-GCTATGTGTGGTGTGGGAGTGCACATGAG
1 GATGATATATGCCATGTGCAGTGTGGGAGTGCACATGAG
22210972 CTGAGTTAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
36 26 0.38
37 2 0.03
38 2 0.03
39 34 0.50
41 4 0.06
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.27
Consensus pattern (39 bp):
GATGATATATGCCATGTGCAGTGTGGGAGTGCACATGAG
Found at i:22211084 original size:13 final size:13
Alignment explanation
Indices: 22211066--22211090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22211056 ATGTCTATAT
22211066 ATATATATACATA
1 ATATATATACATA
22211079 ATATATATACAT
1 ATATATATACAT
22211091 GAATTCTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATATATACATA
Found at i:22218098 original size:232 final size:231
Alignment explanation
Indices: 22217655--22219914 Score: 1791
Period size: 232 Copynumber: 9.7 Consensus size: 231
22217645 CATATTACCT
* **
22217655 ATGCAAACATCCAATTATGATAGGTTTTTAATCAAGAA-AAACAAATCTTTTCATTTATTTTCGA
1 ATGCAAACATCCAATTATGATAGG-TTTTAATCAAGAACAAA-AAAGCTTTAGATTTATTTTCGA
* * * *
22217719 TTTATAATCATTCATAAGAATATAAATAAATTATATATCATATTATTGATGATAATATGTTATCA
64 TTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCA
* *
22217784 AAATGATAATTATTCATTGATAAACCATTACAAGCATTCAAAGGCATGATAAACATAAAATGCTC
129 AAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTC
* *
22217849 TTTTCTTTTCAATGGATAGCATCCACATCACGTTTCACA
194 TTTTCTTGTCAATGGATAGCATCCACTTCACGTTTC-CA
* * * *
22217888 ATGCAAACATTCAATTATGATAGCTTTTAATAAAGAACAAAAAAGCTTTAGATTTATGTTCGATT
1 ATGCAAACATCCAATTATGATAGGTTTTAATCAAGAACAAAAAAGCTTTAGATTTATTTTCGATT
* * * * **
22217953 TATAAACATTTATAAGATTATAATTGAATCACATATCATAATATTGATGACGATATGTTATCAAA
66 TATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAA
* * * * * **
22218018 ATGATAATTATTCATTGATAAACCGTTTCAAGCTTTCGAAGACATGATAATCTGGAAATGCTCTT
131 ATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTT
* * * *
22218083 TCCTTGTCCATGGATAGCATTCACTCCACGTTTCCTA
196 TTCTTGTCAATGGATAGCATCCACTTCACGTTTCC-A
* * ** *
22218120 ATGCAAATATCCAATTA--ATAGAGCTTTTAA-CAAAAAACAACGAAGCATTCAATTAATTTTTT
1 ATGCAAACATCCAATTATGATAG-G-TTTTAATC-AAGAACAAAAAAGC--T---TT-A-----G
* * ** *
22218182 ATTTATTTTCCATTTATAATCATTTACAAGATTATAAATGAATTAGGTCTCATAATATTGATGAT
52 ATTTATTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGAT
** * * * * * *
22218247 AATATGTTATGTAAATTATAGTTATTCATTGATAGACTATTATAAGATTTCAAAGGCATGATAAA
117 AATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAA
* * * * * * *
22218312 CTTAAAAGGCTCTTGTT-TTTTCAATGAATAACATTCATTTCACATTTCCCA
182 CTTAAAATGCTCTT-TTCTTGTCAATGGATAGCATCCACTTCACGTTT-CCA
* * * * * * * * *
22218363 ATGCAAA-AACAAAATTTTGATAGGTTTTAACCATGAACAACAATGTTTTCA-ATTTATTTTCAA
1 ATGCAAACATC-CAATTATGATAGGTTTTAATCAAGAACAAAAAAGCTTT-AGATTTATTTTCGA
* * * * *
22218426 TTTATAATCCTTTATAAGATTATAAATGAATTATACATCACAATATTGATGATAATATGCTATCC
64 TTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCA
* * * * *
22218491 AAATGTTAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCA-AATAAACTTTAAATGCAC
129 AAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTC
* *
22218555 TTTT-TTGTCAATGGAT-GTCATCCACTACACATTTCC-
194 TTTTCTTGTCAATGGATAG-CATCCACTTCACGTTTCCA
* ** ** * **
22218591 CT-CTACAACATCCAAGGATGATAGGTTTTAA-CAA-AGACAAGCCAACCTTTCTATTTAATTTT
1 ATGC-A-AACATCCAATTATGATAGGTTTTAATCAAGA-ACAA-AAAAGCTTTAGATTT-ATTTT
* * * * * * **
22218653 -GATATATAATTACTTATAAGATCATAAATGAAATATATATCATAATATTGATAATAATACATTA
61 CGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTA
* * *
22218717 TCAAAATGACAATTATTCATTGATAAATCATTACAAG-TATTCGAAGGCATGATAAACTTAAAAT
126 TCAAAATGATAATTATTCATTGATAAACCATTACAAGCT-TTCAAAGGCATGATAAACTTAAAAT
* * *
22218781 GCTTTTTTCTTTTCAATGGATAGCATCCACTTCATGTTTCCCA
190 GCTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTT-CCA
* ** * * * *
22218824 ATGCAAGCATCTGATTATGATAGGTTTTAATTAAGAACAACAAACGGTTTTATTTATTTTTTATT
1 ATGCAAACATCCAATTATGATAGGTTTTAATCAAGAACAA-AAA-AG----CTTTA-----GATT
* * * ***
22218889 TATTTTTC-ATTTATAATCATTTA-CAGCATCATAAATGAATTAGATATTGCAATATTGATGATA
55 TA-TTTTCGATTTATAATCATTTATAAG-ATTATAAATGAATTATATATCATAATATTGATGATA
* * *
22218952 ATATGTTATCCAAATGATAATTATTCATTCATAAACCATTACGAGCTTTCAAAGGCATGATAAAC
118 ATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAAC
* * * *
22219017 TTAAAATGCTATGTTCTTTTCAATGGATAGCATCCACTTCATGTTTCCCA
183 TTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTT-CCA
*
22219067 ATGCAAACATCGAATTATGATAGG-TTT--T--A-AAC---AAAG-----G-----TTTT-GATT
1 ATGCAAACATCCAATTATGATAGGTTTTAATCAAGAACAAAAAAGCTTTAGATTTATTTTCGATT
* * * * *
22219112 TCTACA-CATTTATAAGATTATAAATGAATTACATATCATAATATTGATGATAAAATATTATAAA
66 TATA-ATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAA
** * *
22219176 AATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGA-AAATCTTGTAATGTTT
130 AATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAA-CTTAAAATGCTC
* * * *
22219240 TTTTCTTATCCATGGATAGCATCCACTACATGTTTCCTA
194 TTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCC-A
* * * *
22219279 ATGTAAACATCCAATTATGATAGGCTTTAACCAAGAACAATAAAGCATTT-GATTTATTTTTC-A
1 ATGCAAACATCCAATTATGATAGGTTTTAATCAAGAACAAAAAAGC-TTTAGATTTA-TTTTCGA
* *
22219342 TTTATAATCCATTTATACTCATTTACAAGATTATAGATGAATTAGT-TATCATAATATTGATGAC
64 TTTATAAT-CA--T-T--T-A--T--AAGATTATAAATGAATTA-TATATCATAATATTGATGAT
* * *
22219406 AATAT-TTAATGC-AAATGAAAATTATTCATTGATAAACCTTTACAAGCTTTTGAAA-GCATGAT
117 AATATGTT-AT-CAAAATGATAATTATTCATTGATAAACCATTACAAGC-TTTCAAAGGCATGAT
* * ** * * * * * * *
22219468 AAATTTAAAATGCTCATGCCTTGTGAATGGAAAACATTCATTTTATGTTTCCTA
179 AAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCC-A
* * * * *
22219522 ATGTAAAC-TGCCAATTATGATAGGTTTCAATCAAGAACAACAATA-CTTTCGATTTATTTTCAA
1 ATGCAAACAT-CCAATTATGATAGGTTTTAATCAAGAACAA-AAAAGCTTTAGATTTATTTTCGA
* * * * *
22219585 TTTTTAATCATTTATAAGATTATAAATTAAATATATATCATAATATTGATTG-TAATATATTATT
64 TTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA-TGATAATATGTTATC
* * * * * ** *
22219649 AGAATGATAATTTTTCATTGATAAACCATTACAAGTTTTCAAAGACATGACAATTTTAAAATACT
128 AAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCT
* *
22219714 CTTTTTTTGTAAATGGATAGCATCCACTTCTA-GTTTTCCA
193 CTTTTCTTGTCAATGGATAGCATCCACTTC-ACG-TTTCCA
* * * * * **
22219754 ATGCAAACCTCCAATTGTTATTA-GTTTTAATCAAGAACAACAAAGCTTTCGATTTATTTTTTAT
1 ATGCAAACATCCAATTATGA-TAGGTTTTAATCAAGAACAAAAAAGCTTTAGATTTATTTTCGAT
* * * *
22219818 TTACAAT-ATTTTATTAGATTATAAATGAATTATATAGCACAATATTGATGATAATA-GATTATC
65 TTATAATCA-TTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG-TTATC
* * *
22219881 AAAATGTTAAATATTCATTTGATAAACAATTACA
128 AAAATGATAATTATTCA-TTGATAAACCATTACA
22219915 GTGTAATACC
Statistics
Matches: 1621, Mismatches: 292, Indels: 228
0.76 0.14 0.11
Matches are distributed among these distances:
211 5 0.00
212 163 0.10
213 6 0.00
217 1 0.00
218 3 0.00
221 4 0.00
226 1 0.00
227 2 0.00
228 9 0.01
229 122 0.08
230 54 0.03
231 54 0.03
232 556 0.34
233 66 0.04
234 4 0.00
235 1 0.00
236 2 0.00
237 6 0.00
238 9 0.01
239 2 0.00
240 2 0.00
241 2 0.00
242 21 0.01
243 505 0.31
244 17 0.01
245 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (231 bp):
ATGCAAACATCCAATTATGATAGGTTTTAATCAAGAACAAAAAAGCTTTAGATTTATTTTCGATT
TATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAA
ATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTT
TTCTTGTCAATGGATAGCATCCACTTCACGTTTCCA
Found at i:22218887 original size:11 final size:11
Alignment explanation
Indices: 22218871--22218902 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
22218861 CAACAAACGG
22218871 TTTTATTTATT
1 TTTTATTTATT
22218882 TTTTATTTATT
1 TTTTATTTATT
*
22218893 TTTCATTTAT
1 TTTTATTTAT
22218903 AATCATTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:22219066 original size:704 final size:707
Alignment explanation
Indices: 22217655--22219096 Score: 1674
Period size: 704 Copynumber: 2.0 Consensus size: 707
22217645 CATATTACCT
* * * *
22217655 ATGCAAACATCCAATTATGATAGGTTTTTAATCAAGAAAAACAAATCTTTTCATTTATTTTCGAT
1 ATGCAAACAACAAATTATGATAGG-TTTTAACCAAGAAAAACAAATCTTTTCATTTATTTTCAAT
* * * *
22217720 TTATAATCATTCATAAGAATATAAATAAATTATATATCATATTATTGATGATAATATGTTATCAA
65 TTATAATCATTCATAAGAATATAAATAAATTATACATCACAATATTGATGATAATATGCTATCAA
* *
22217785 AATGATAATTATTCATTGATAAACCATTACAAGCATTCAAAGGCATGATAAACATAAAATGCTCT
130 AATGATAATTATTCATTGATAAACCATTACAAGCATTCAAAGGCATAATAAACATAAAATGCACT
* * * * **
22217850 TTTCTTTTCAATGGATAGCATCCACATCACGTTTCACAATGCAAACATTCAATTATGATAGCTTT
195 TTTCTTGTCAATGGATAGCATCCACATCACATTTCACAATACAAACATCCAAGGATGATAGCTTT
* * * * * *
22217915 TAATAAAGAACAAAAAAGCTTTAGATTTATGTTCGATTTATAAACATTTATAAGATTATAATTGA
260 TAACAAAGAACAAAAAACCTTTAGATTTATGTTCGATATATAAACACTTATAAGATCATAAATGA
* * ** * *
22217980 ATCACATATCATAATATTGATGACGATATGTTATCAAAATGATAATTATTCATTGATAAACCGTT
325 ATCACATATCATAATATTGATAACAATACATTATCAAAATGACAATTATTCATTGATAAACCATT
* * * * *
22218045 TCAAGCTTTCGAAGACATGATAATCTGGAAATGCTCTTTCCTTGTCCATGGATAGCATTCACTCC
390 ACAAGCTTTCGAAGACATGATAAACTGAAAATGCTCTTTCCTTGTCAATGGATAGCATCCACTCC
* * *
22218110 ACGTTTCCTAATGCAAATATCCAATTAATAGAGCTTTTAACAAAAAACAACGAAGCATTCAATTA
455 ACGTTTCCCAATGCAAACATCCAATTAATAGAGCTTTTAACAAAAAACAACAAAGCATTCAATTA
* * * *
22218175 ATTTTTTATTTATTTTCCATTTATAATCATTTACAAGATTATAAATGAATTAGGTCTCATAATAT
520 ATTTTTTATTTATTTTCCATTTATAATCATTTACAAGATCATAAATGAATTAGATATCACAATAT
** * * * * * *
22218240 TGATGATAATATGTTATGTAAATTATAGTTATTCATTGATAGACTATTATAAGATTTCAAAGGCA
585 TGATGATAATATGTTATCCAAATGATAATTATTCATTCATAAACCATTACAAGATTTCAAAGGCA
* * *
22218305 TGATAAACTTAAAAGGCTCTTGTTTTTTCAATGAATAACATTCATTTCACATTTCCCA
650 TGATAAACTTAAAAGGCTCATGTTTTTTCAATGAATAACATCCACTTCACATTTCCCA
* * * *
22218363 ATGCAAA-AACAAAATTTTGATAGGTTTTAACCATGAACAAC-AATGTTTTCAATTTATTTTCAA
1 ATGCAAACAAC-AAATTATGATAGGTTTTAACCAAGAAAAACAAATCTTTTC-ATTTATTTTCAA
* * * * *
22218426 TTTATAATCCTTTATAAGATTATAAATGAATTATACATCACAATATTGATGATAATATGCTATCC
64 TTTATAATCATTCATAAGAATATAAATAAATTATACATCACAATATTGATGATAATATGCTATCA
* * * * *
22218491 AAATGTTAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCA-AATAAACTTTAAATGCAC
129 AAATGATAATTATTCATTGATAAACCATTACAAGCATTCAAAGGCATAATAAACATAAAATGCAC
* ** *
22218555 TTTT-TTGTCAATGGAT-GTCATCCAC-TACACATTTCCCTCTAC-AACATCCAAGGATGATAGG
194 TTTTCTTGTCAATGGATAG-CATCCACAT-CACATTTCACAATACAAACATCCAAGGATGATAGC
** ** * **
22218616 TTTTAACAAAG-ACAAGCCAACCTTTCTATTTAAT-TTTGATATATAATTACTTATAAGATCATA
257 TTTTAACAAAGAACAA-AAAACCTTTAGATTT-ATGTTCGATATATAAACACTTATAAGATCATA
* *
22218679 AATGAAAT-ATATATCATAATATTGATAATAATACATTATCAAAATGACAATTATTCATTGATAA
320 AATG-AATCACATATCATAATATTGATAACAATACATTATCAAAATGACAATTATTCATTGATAA
* * * * * *
22218743 ATCATTACAAG-TATTCGAAGGCATGATAAACTTAAAATGCTTTTTTCTTTTCAATGGATAGCAT
384 ACCATTACAAGCT-TTCGAAGACATGATAAACTGAAAATGCTCTTTCCTTGTCAATGGATAGCAT
* * * ** ** *
22218807 CCACTTCATGTTTCCCAATGCAAGCATCTGATTATGATAG-G-TTTTAATTAAGAACAACAAA-C
448 CCACTCCACGTTTCCCAATGCAAACATCCAATTA--ATAGAGCTTTTAACAAAAAACAACAAAGC
* ** * *
22218869 GGTTTTATTTATTTTTTATTTATTTTTCATTTATAATCATTTAC-AGCATCATAAATGAATTAGA
511 -ATTCAATTAATTTTTTATTTATTTTCCATTTATAATCATTTACAAG-ATCATAAATGAATTAGA
** * *
22218933 TATTGCAATATTGATGATAATATGTTATCCAAATGATAATTATTCATTCATAAACCATTACGAGC
574 TATCACAATATTGATGATAATATGTTATCCAAATGATAATTATTCATTCATAAACCATTACAAGA
* * * **
22218998 TTTCAAAGGCATGATAAACTTAAAATGCT-ATGTTCTTTTCAATGGATAGCATCCACTTCATGTT
639 TTTCAAAGGCATGATAAACTTAAAAGGCTCATGTT-TTTTCAATGAATAACATCCACTTCACATT
22219062 TCCCA
703 TCCCA
* *
22219067 ATGCAAACATCGAATTATGATAGGTTTTAA
1 ATGCAAACAACAAATTATGATAGGTTTTAA
22219097 ACAAAGGTTT
Statistics
Matches: 611, Mismatches: 109, Indels: 32
0.81 0.14 0.04
Matches are distributed among these distances:
703 12 0.02
704 389 0.64
705 36 0.06
706 30 0.05
707 126 0.21
708 18 0.03
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (707 bp):
ATGCAAACAACAAATTATGATAGGTTTTAACCAAGAAAAACAAATCTTTTCATTTATTTTCAATT
TATAATCATTCATAAGAATATAAATAAATTATACATCACAATATTGATGATAATATGCTATCAAA
ATGATAATTATTCATTGATAAACCATTACAAGCATTCAAAGGCATAATAAACATAAAATGCACTT
TTCTTGTCAATGGATAGCATCCACATCACATTTCACAATACAAACATCCAAGGATGATAGCTTTT
AACAAAGAACAAAAAACCTTTAGATTTATGTTCGATATATAAACACTTATAAGATCATAAATGAA
TCACATATCATAATATTGATAACAATACATTATCAAAATGACAATTATTCATTGATAAACCATTA
CAAGCTTTCGAAGACATGATAAACTGAAAATGCTCTTTCCTTGTCAATGGATAGCATCCACTCCA
CGTTTCCCAATGCAAACATCCAATTAATAGAGCTTTTAACAAAAAACAACAAAGCATTCAATTAA
TTTTTTATTTATTTTCCATTTATAATCATTTACAAGATCATAAATGAATTAGATATCACAATATT
GATGATAATATGTTATCCAAATGATAATTATTCATTCATAAACCATTACAAGATTTCAAAGGCAT
GATAAACTTAAAAGGCTCATGTTTTTTCAATGAATAACATCCACTTCACATTTCCCA
Found at i:22219207 original size:455 final size:460
Alignment explanation
Indices: 22217723--22219820 Score: 1365
Period size: 475 Copynumber: 4.5 Consensus size: 460
22217713 TTTCGATTTA
* * * * *
22217723 TAATCATTCATAAGAATATAAAT-AAATTATATATCATATTATTGATGATAATATGTTATCAAAA
1 TAATCATTTATAAGATTATAAATGAAA-TATATATCATAATATTGATGATAATATATTATAAAAA
* * *
22217787 TGATAATTATTCATTGATAAACCATTACAAGCATTCAAAGGCATGATAAACATAAAATGCTCTTT
65 TGATAATTATTCATTGATAAACCATTACAAG-TTTCAAAGGCATGA-AAACTTAAAATGCTTTTT
* * * * * *
22217852 TCTTTTCAATGGATAGCATCCACATCACGTTTCACAATGCAAACATTCAATTATGATAGCTTTTA
128 TCTTATCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTA
* * * ** * * * *
22217917 ATAAAGAACAA-AAA-A---GCTTTA-----GATTTATGTTCGATTTATAAACATTTATAAGATT
193 ATCAAGAACAACAAAGATTTGATTTATTTTTTATTTATAATCCATTTATAATCATTTACAAGATC
* * * * * * * *
22217972 ATAATTGAATCACATATCATAATATTGATGACGATATGTT-ATCAAAATGATAATTATTCATTGA
258 ATAAATGAATTAGATATCACAATATTGATGACAATAT-TTAATCCAAATGAAAATTATTCATTCA
* * * * ** * * * * *
22218036 TAAACCGTTTCAAGC-TTTCGAAGACATGATAATCTGGAAATGCTCTTTCCTTGTCCATGGATAG
322 TAAACCATTACAAGCTTTTCAAAG-CATGATAAACTTAAAATGCTCATGCCTTGTCAATGGAAAA
* * * * * *
22218100 CATTCACTCCACGTTTCCTAATGCAAA-TATCCAATTA--ATAGAGCTTTTAACAAAAAACAACG
386 CATCCACTTCATGTTTCCCAATGCAAACT-GCCAATTATGATAG-G--TTT--------ATAA-G
* **
22218162 AAGCATTCAATTAATTTTTTATTTATTTTCCATTT
438 AA-CA-ACAA-T-A---TTT-CGTATTTT-C---T
* * ** * * **
22218197 ATAATCATTTACAAGATTATAAATGAATTAGGTCTCATAATATTGATGATAATATGTTATGTAAA
1 -TAATCATTTATAAGATTATAAATGAAATATATATCATAATATTGATGATAATATATTATAAAAA
* * * * * *
22218262 TTATAGTTATTCATTGATAGACTATTATAAGATTTCAAAGGCATGATAAACTTAAAAGGCTCTTG
65 TGATAATTATTCATTGATAAACCATTACAAG-TTTCAAAGGCATGA-AAACTTAAAATGCT-TT-
* * * * ** * * *
22218327 TTT-TT-TCAATGAATAACATTCATTTCACATTTCCCAATGCAAA-AACAAAATTTTGATAGGTT
126 TTTCTTATCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATC-CAATTATGATAGGTT
* * * * * * * *
22218389 TTAACCATGAACAACAATG--TT--TTCA--ATTTA-TT-T--TCAATTTATAATCCTTTATAAG
190 TTAATCAAGAACAACAAAGATTTGATTTATTTTTTATTTATAATCCATTTATAATCATTTACAAG
* * * * * **
22218444 ATTATAAATGAATTATACATCACAATATTGATGATAATATGCT-ATCCAAATGTTAATTATTCAT
255 ATCATAAATGAATTAGATATCACAATATTGATGACAATAT-TTAATCCAAATGAAAATTATTCAT
* * * * * ***
22218508 TGATAAACCATTACAAGC-TTTCGAAGGCA-AATAAACTTTAAATGCAC-TTTTTTGTCAATGGA
319 TCATAAACCATTACAAGCTTTTC-AAAGCATGATAAACTTAAAATGCTCATGCCTTGTCAATGGA
*** * ** ** * ** *
22218570 TGTCATCCACTACACATTTCCCTCTAC-AACAT-CCAAGGATGATAGGTTT-TAACAAAGACAAG
383 AAACATCCACTTCATGTTTCCCAATGCAAAC-TGCCAATTATGATAGGTTTAT-A-AGA-ACAA-
** *
22218632 CCAACCTTTC-TATTTAATTTT
443 -CAATATTTCGTA-TT--TTCT
* * * *
22218653 GATATATAATTACTTATAAGATCATAAATGAAATATATATCATAATATTGATAATAATACATTAT
1 --TA-ATCA-T--TTATAAGATTATAAATGAAATATATATCATAATATTGATGATAATATATTAT
* * * *
22218718 CAAAATGACAATTATTCATTGATAAATCATTACAAGTATTCGAAGGCATGATAAACTTAAAATGC
60 AAAAATGATAATTATTCATTGATAAACCATTACAAGT-TTCAAAGGCATGA-AAACTTAAAATGC
* * **
22218783 TTTTTTCTTTTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAGCATCTGATTATGATAGG
123 TTTTTTCTTATCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGG
* * * ** *
22218848 TTTTAATTAAGAACAACAAACGGTTTTATTTATTTTTTATTTATTTTTCATTTATAATCATTTAC
188 TTTTAATCAAGAACAACAAA-GATTTGATTTATTTTTTATTTATAATCCATTTATAATCATTTAC
** * *
22218913 -AGCATCATAAATGAATTAGATATTGCAATATTGATGATAATATGTT-ATCCAAATGATAATTAT
252 AAG-ATCATAAATGAATTAGATATCACAATATTGATGACAATAT-TTAATCCAAATGAAAATTAT
* * *
22218976 TCATTCATAAACCATTACGAGC-TTTCAAAGGCATGATAAACTTAAAATGCT-ATGTTCTTTTCA
315 TCATTCATAAACCATTACAAGCTTTTCAAA-GCATGATAAACTTAAAATGCTCATG-CCTTGTCA
* * *
22219039 ATGGATAGCATCCACTTCATGTTTCCCAATGCAAACAT-CGAATTATGATAGGTTT-T-A-AACA
378 ATGGAAAACATCCACTTCATGTTTCCCAATGCAAAC-TGCCAATTATGATAGGTTTATAAGAACA
*
22219100 A-AGGT-TTT-G-A-TTTC-
442 ACA-ATATTTCGTATTTTCT
* * *
22219114 TACA-CATTTATAAGATTATAAATGAATTACATATCATAATATTGATGATAAAATATTATAAAAA
1 TA-ATCATTTATAAGATTATAAATGAAATATATATCATAATATTGATGATAATATATTATAAAAA
** *
22219178 TGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGAAAATCTTGTAATGTTTTTT
65 TGATAATTATTCATTGATAAACCATTACAAG-TTTCAAAGGCATGAAAA-CTTAAAATGCTTTTT
* * * * *
22219243 TCTTATCCATGGATAGCATCCACTACATGTTTCCTAATGTAAACATCCAATTATGATAGGCTTTA
128 TCTTATCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTA
* * * *
22219308 ACCAAGAACAATAAAGCATTTGATTTATTTTTCATTTATAATCCATTTATACTCATTTACAAGAT
193 ATCAAGAACAACAAAG-ATTTGATTTATTTTTTATTTATAATCCATTTATAATCATTTACAAGAT
* * * * * *
22219373 TATAGATGAATTAGTTATCATAATATTGATGACAATATTTAATGCAAATGAAAATTATTCATTGA
257 CATAAATGAATTAGATATCACAATATTGATGACAATATTTAATCCAAATGAAAATTATTCATTCA
* * * *
22219438 TAAACCTTTACAAGCTTTTGAAAGCATGATAAATTTAAAATGCTCATGCCTTGTGAATGGAAAAC
322 TAAACCATTACAAGCTTTTCAAAGCATGATAAACTTAAAATGCTCATGCCTTGTCAATGGAAAAC
* * * * *
22219503 ATTCATTTTATGTTTCCTAATGTAAACTGCCAATTATGATAGGTTTCAATCAAGAACAACAATAC
387 ATCCACTTCATGTTTCCCAATGCAAACTGCCAATTATGATAGGTTT--AT-AAGAACAACAATA-
22219568 TTTCGATTTATTTTCAATTTT
448 TTTCG---TATTTTC-----T
* * *
22219589 TAATCATTTATAAGATTATAAATTAAATATATATCATAATATTGATTG-TAATATATTATTAGAA
1 TAATCATTTATAAGATTATAAATGAAATATATATCATAATATTGA-TGATAATATATTATAAAAA
* * ** *
22219653 TGATAATTTTTCATTGATAAACCATTACAAGTTTTCAAAGACATGACAATTTTAAAATACTCTTT
65 TGATAATTATTCATTGATAAACCATTACAAG-TTTCAAAGGCATGA-AAACTTAAAATGCT-TTT
* * * * * *
22219718 TT-TTGTAAATGGATAGCATCCACTTC-TAGTTTTCCAATGCAAACCTCCAATTGTTATTA-GTT
127 TTCTTATCAATGGATAGCATCCACTTCAT-GTTTCCCAATGCAAACATCCAATTATGA-TAGGTT
*
22219780 TTAATCAAGAACAACAAAGCTTTCGATTTATTTTTTATTTA
190 TTAATCAAGAACAACAAAGATTT-GATTTATTTTTTATTTA
22219821 CAATATTTTA
Statistics
Matches: 1292, Mismatches: 243, Indels: 176
0.76 0.14 0.10
Matches are distributed among these distances:
454 7 0.01
455 344 0.27
456 13 0.01
457 6 0.00
458 7 0.01
459 10 0.01
460 8 0.01
461 159 0.12
462 6 0.00
463 7 0.01
464 9 0.01
466 4 0.00
467 4 0.00
468 5 0.00
469 6 0.00
470 5 0.00
471 8 0.01
472 103 0.08
473 46 0.04
474 54 0.04
475 451 0.35
476 23 0.02
477 4 0.00
478 2 0.00
479 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (460 bp):
TAATCATTTATAAGATTATAAATGAAATATATATCATAATATTGATGATAATATATTATAAAAAT
GATAATTATTCATTGATAAACCATTACAAGTTTCAAAGGCATGAAAACTTAAAATGCTTTTTTCT
TATCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTAATC
AAGAACAACAAAGATTTGATTTATTTTTTATTTATAATCCATTTATAATCATTTACAAGATCATA
AATGAATTAGATATCACAATATTGATGACAATATTTAATCCAAATGAAAATTATTCATTCATAAA
CCATTACAAGCTTTTCAAAGCATGATAAACTTAAAATGCTCATGCCTTGTCAATGGAAAACATCC
ACTTCATGTTTCCCAATGCAAACTGCCAATTATGATAGGTTTATAAGAACAACAATATTTCGTAT
TTTCT
Found at i:22219289 original size:212 final size:212
Alignment explanation
Indices: 22218919--22219308 Score: 566
Period size: 212 Copynumber: 1.8 Consensus size: 212
22218909 TTACAGCATC
* ** * * **
22218919 ATAAATGAATTAGATATTGCAATATTGATGATAATATGTTATCCAAATGATAATTATTCATTCAT
1 ATAAATGAATTACATATCACAATATTGATGATAAAATATTATAAAAATGATAATTATTCATTCAT
* *
22218984 AAACCATTACGAGCTTTCAAAGGCATGATAAACTTAAAATGCTATGTTCTTTTCAATGGATAGCA
66 AAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTATGTTCTTATCAATGGATAGCA
* * *
22219049 TCCACTTCATGTTTCCCAATGCAAACATCGAATTATGATAGGTTTTAAACAAAGGTTTTGATTTC
131 TCCACTACATGTTTCCCAATGCAAACATCCAATTATGATAGGCTTTAAACAAAGGTTTTGATTTC
22219114 TACACATTTATAAGATT
196 TACACATTTATAAGATT
* *
22219131 ATAAATGAATTACATATCATAATATTGATGATAAAATATTATAAAAATGATAATTATTCATTGAT
1 ATAAATGAATTACATATCACAATATTGATGATAAAATATTATAAAAATGATAATTATTCATTCAT
** * * * *
22219196 AAACCATTACAAGCTTTCAAAGGCATGA-AAATCTTGTAATGTTTTTTTCTTATCCATGGATAGC
66 AAACCATTACAAGCTTTCAAAGGCATGATAAA-CTTAAAATGCTATGTTCTTATCAATGGATAGC
* *
22219260 ATCCACTACATGTTTCCTAATGTAAACATCCAATTATGATAGGCTTTAA
130 ATCCACTACATGTTTCCCAATGCAAACATCCAATTATGATAGGCTTTAA
22219309 CCAAGAACAA
Statistics
Matches: 155, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
211 3 0.02
212 152 0.98
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (212 bp):
ATAAATGAATTACATATCACAATATTGATGATAAAATATTATAAAAATGATAATTATTCATTCAT
AAACCATTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTATGTTCTTATCAATGGATAGCA
TCCACTACATGTTTCCCAATGCAAACATCCAATTATGATAGGCTTTAAACAAAGGTTTTGATTTC
TACACATTTATAAGATT
Found at i:22223082 original size:232 final size:232
Alignment explanation
Indices: 22222436--22223093 Score: 752
Period size: 231 Copynumber: 2.8 Consensus size: 232
22222426 GGCTGTGACA
* * * * * *
22222436 TACAAGCTTCCAAATGCATGATAAACTTAAAATACACTTTT-TTGTTAATGGATAGCATCCGCTC
1 TACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTC
* * * * * * *
22222500 CACATTTCTCTATACAAACATCCAATTCTGATAAGTTTTAACAAAGAGA-AACAAAGCTTTTCAT
66 CATATTTCTCAATACAAACATCCAATTATGATAGGTTTTAACCAAGA-ACAACAAAACTTTCCAT
* * *
22222564 TTATTTTCGATTTATAATCATTTG-TAAGATTATAAATAAAATACGTATTATAATATTGATGATA
130 TTATTTTCGATTTATAATCA-TTGATAAGATTATAAATGAAATACATATAATAATATTGATGATA
* ** *
22222628 ATATGTTATCAAAATGTTAATTATTCGTTGATAAACCAT
194 ATATCTTATCAAAATAATAATTATTCATTGATAAACCAT
* * * * *
22222667 TACATGCTTTCAAAGGTATGATAAACTTAAAATGGGT-TTTTCTTTTCAATGGATAGCATCGACT
1 TACAAGCTTTCAAAGGCATGATAAACTTAAAAT-GCTCTTTTCTTGTCAATGGATAGCATCCACT
* * * * * * * * * *
22222731 TCATGTTTCCCAATGCAAAC-TCCAATTATGATAGGCTTTGATCAAGAACAACAAATCGTTCAAT
65 CCATATTTCTCAATACAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAACTTTCCAT
* * * ** * *
22222795 TTATTTTCGATTTATAAACATTTATAACATTATAAATGACTTACATTTCATAATATTGATGATAA
130 TTATTTTCGATTTATAATCATTGATAAGATTATAAATGAAATACATATAATAATATTGATGATAA
* * *
22222860 TATCTTATCGAAATAATATTTATTCATTGATAAACTAT
195 TATCTTATCAAAATAATAATTATTCATTGATAAACCAT
* * * *
22222898 TACAAGCATTT-GAAGGCATGATAAACTCAAAATGCTCTTTTCTTGTCAGTGGATAGCATCCACA
1 TACAAGC-TTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACT
22222962 CCATATTTCTCAATACAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAACTTTCCAT
65 CCATATTTCTCAATACAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAACTTTCCAT
* * * * *
22223027 TTATTTTCAATTTGTACTCATTGATAAGATTATAAATGAAATATATATAATAATATTGGTGATAA
130 TTATTTTCGATTTATAATCATTGATAAGATTATAAATGAAATACATATAATAATATTGATGATAA
22223092 TA
195 TA
22223094 AGTGTCACGA
Statistics
Matches: 346, Mismatches: 74, Indels: 13
0.80 0.17 0.03
Matches are distributed among these distances:
230 5 0.01
231 213 0.62
232 128 0.37
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.37
Consensus pattern (232 bp):
TACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTC
CATATTTCTCAATACAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAACTTTCCATT
TATTTTCGATTTATAATCATTGATAAGATTATAAATGAAATACATATAATAATATTGATGATAAT
ATCTTATCAAAATAATAATTATTCATTGATAAACCAT
Found at i:22223855 original size:2 final size:2
Alignment explanation
Indices: 22223845--22223885 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
22223835 ACATATTTAC
* *
22223845 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22223886 CCCATCATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22223947 original size:20 final size:20
Alignment explanation
Indices: 22223890--22223952 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
22223880 TATATACCCA
*
22223890 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
*
22223909 CCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
22223929 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
22223949 TCAT
1 TCAT
22223953 GCGCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.30, C:0.41, G:0.03, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:22223999 original size:43 final size:43
Alignment explanation
Indices: 22223951--22224069 Score: 168
Period size: 43 Copynumber: 2.8 Consensus size: 43
22223941 TCACCAGCTC
** * *
22223951 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATC-CTCGGCTT
22223994 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
* *
22224037 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
22224070 ACATAATTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.19, C:0.38, G:0.21, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
Found at i:22227511 original size:37 final size:37
Alignment explanation
Indices: 22227461--22227538 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
22227451 CATATGCATT
*
22227461 CATCATCATGTGTGCACTCCCTACTTGCACAC-TCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
22227498 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
22227535 CATC
1 CATC
22227539 CTTACACAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 37 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.37, G:0.10, T:0.28
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
Found at i:22229307 original size:232 final size:231
Alignment explanation
Indices: 22228969--22229400 Score: 580
Period size: 231 Copynumber: 1.9 Consensus size: 231
22228959 TGATGAAGTT
* * * *
22228969 AAAATGCTCTTATCTTTTCAATGGATAGCATCCACATCACATTTCCCAATGCAAACATCTAATTA
1 AAAATGCTCTTATCATGTCAATAGATAGCATCCACATCACATTTCCCAATGCAAACATCCAATTA
* * * * * *
22229034 TGATTGGTTTTAATCAAGAACAACAAAGCTTTCAATTTATTTTTGATTTATAAACATTTATAATA
66 TGATAGGTGTTAACCAAGAACAACAAAGCTTTCAATTTA-TTTCGATTTATAAACATTTAAAAGA
* * *
22229099 TTATAAATGAATTACATATCATAATATTGATGATAATATGTTATCAAAATAATATTTATTCATTG
130 TTATAAATGAAATACATATAATAATATTGATGATAATATGTTATCAAAATAATAATTATTCATTG
22229164 ACAAACTATTACAAGCTTTTGAAGGTATAACAAACTC
195 ACAAACTATTACAAGCTTTTGAAGGTATAACAAACTC
* * * * * * *
22229201 AAAATGCTCTTTTCATGTCAATATATATCATCCAC-TCCACATTTTCTAATGCAATCATCCACTT
1 AAAATGCTCTTATCATGTCAATAGATAGCATCCACAT-CACATTTCCCAATGCAAACATCCAATT
* *
22229265 ATGATAGGTGTTAACCAAGAACAACAATA-CTTTCCATTTATTTCGATTTATAATCATTTAAAAG
65 ATGATAGGTGTTAACCAAGAACAACAA-AGCTTTCAATTTATTTCGATTTATAAACATTTAAAAG
* * * *
22229329 ATTATAAATGAAATATATATAATAATATTGATGATACTATGTTATCAAAATGATAATTATTTATT
129 ATTATAAATGAAATACATATAATAATATTGATGATAATATGTTATCAAAATAATAATTATTCATT
*
22229394 GATAAAC
194 GACAAAC
22229401 CATCGAAGCT
Statistics
Matches: 171, Mismatches: 27, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
231 85 0.50
232 85 0.50
233 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (231 bp):
AAAATGCTCTTATCATGTCAATAGATAGCATCCACATCACATTTCCCAATGCAAACATCCAATTA
TGATAGGTGTTAACCAAGAACAACAAAGCTTTCAATTTATTTCGATTTATAAACATTTAAAAGAT
TATAAATGAAATACATATAATAATATTGATGATAATATGTTATCAAAATAATAATTATTCATTGA
CAAACTATTACAAGCTTTTGAAGGTATAACAAACTC
Found at i:22230041 original size:232 final size:229
Alignment explanation
Indices: 22229490--22230595 Score: 996
Period size: 232 Copynumber: 4.8 Consensus size: 229
22229480 TGCAAATAGC
* * * * * *
22229490 TTTT-GATTTATAGTCATTTATAATATTATAAATGAATTATAAATCACAATATTGATCATACTAT
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
* * * * * ** * **
22229554 GTCATCAAAATGATCATTATTCTTTGACAAATGATTACATGGATTCAAAGGCATGATAAACTTAA
66 GTTATCAAAATAATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAA
* * * * *
22229619 AATGCTCTTTTCTTTTCAACT-AATAGCATCCACTTCACGTTTCCCAATGA-AAACATCTAATTA
131 AATGCTCTTTTCTTTT-AA-TGGATAGCATCCACTTCACATTTCCCAAT-ACCAACATCCATTTA
* ** * **
22229682 TGATCA-TTTTTATTCAAGAAAAACAAAGCTTTTGATTTA
193 TGAT-AGGTTTTAAACAAGAACAA-AAAGC-TTCCATTTA
** * * * * *
22229721 TTTTTTTAGTTATAATCATTTACAAAAATT-TAACTGAATTATATATCACAATATTGATGATAAT
1 -TTTTCGATTTATAATCATTTA-TAAGATTATAAATGAATTATATATCATAATATTGATGATAAT
* * *
22229785 ATGTTATCCAAATGATAATTATTCATTGATAAA-TAGTTACAAGCTTTCAAAGGCATGATAAACT
64 ATGTTATCAAAATAATAATTATTCATTGATAAACCA-TTACAAGCTTTCAAAGGCATGATAAACT
* * * * *
22229849 TAAAATGCTCTTGTCTTCTTAATGGATACCATCCATTTCACATTTCGCAATGCCAACATCCATTT
128 TAAAATGCTCTTTTCTT-TTAATGGATAGCATCCACTTCACATTTCCCAATACCAACATCCATTT
* *
22229914 ATGATAGGTTTGAACCAAGAACAATAATA-CTTCCAATTTA
192 ATGATAGGTTTTAAACAAGAACAA-AA-AGCTTCC-ATTTA
* * * * * *
22229954 TCTTCGACTTATAATCATTTTTAAGATTTTAAATGAATTATTTATCATAATATTGATGGTAATAT
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
* * * * * *
22230019 GTTATTAAAATAATATTTATTCATTGATAAACTATTACAAGATTTCGAAGGCATGATAAATTTAA
66 GTTATCAAAATAATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAA
* *** * ** * **
22230084 AATGCTCTTTTCTTATAAATGGATAGCATTTGCTTCACTTTTTTCACTATAAACATCCAATTT-T
131 AATGCTCTTTTCTT-TTAATGGATAGCATCCACTTCACATTTCCCAATACCAACATCC-ATTTAT
* * **
22230148 GATAGGTTTTAATCAAGAACAACAAAGTTTTTGATTTA
194 GATAGGTTTTAAACAAGAACAA-AAAG-CTTCCATTTA
** * * *
22230186 TTTTTTATTTATAATCATTCATTAGATTATAAATGAATTATATATCATAACATTGATGATAATAT
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
* ** * * * *
22230251 GTTATTAAAATGTTAATTATTCATTTGATAAACAATTATAGGCTTTCAAAGGCATGACAAACTTA
66 GTTATCAAAATAATAATTATTCA-TTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTA
* * * * *
22230316 AAATGCACTTTT-TTGTTAATAGATAGCATCCAC-TCTACGTTTCCCTATACCAACATCCAATTA
130 AAATGCTCTTTTCTT-TTAATGGATAGCATCCACTTC-ACATTTCCCAATACCAACATCCATTTA
* *
22230379 TGATAGCTTTTAAACAAGGCAA-ACAAAGCTTTCCATTTA
193 TGATAGGTTTTAAACAA-G-AACAAAAAGC-TTCCATTTA
*
22230418 TTTTCGATTTATAATCATTTATAAGATTATAAATGAAATATATATCATAATATTG-TGGATAATA
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGAT-GATAATA
* * * * ** *
22230482 TTTTATCAAAATATTAAATATTCATTGGTAAACCATTACAAGCATTGGAAA-GCATGGTAAACTT
65 TGTTATCAAAATAATAATTATTCATTGATAAACCATTACAAGC-TTTCAAAGGCATGATAAACTT
* *
22230546 AAAATGCTCTTTTCTTTCCAATGGATAGCATCCACATCACATTTCCCAAT
129 AAAATGCTCTTTTCTTT-TAATGGATAGCATCCACTTCACATTTCCCAAT
22230596 GCAAGTATGT
Statistics
Matches: 709, Mismatches: 140, Indels: 50
0.79 0.16 0.06
Matches are distributed among these distances:
231 51 0.07
232 421 0.59
233 227 0.32
234 10 0.01
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (229 bp):
TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
GTTATCAAAATAATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGGCATGATAAACTTAA
AATGCTCTTTTCTTTTAATGGATAGCATCCACTTCACATTTCCCAATACCAACATCCATTTATGA
TAGGTTTTAAACAAGAACAAAAAGCTTCCATTTA
Found at i:22230471 original size:464 final size:463
Alignment explanation
Indices: 22229490--22230596 Score: 1245
Period size: 464 Copynumber: 2.4 Consensus size: 463
22229480 TGCAAATAGC
* * * * ** *
22229490 TTTT-GATTTATAGTCATTTATAATATTATAAATGAATTATAAATCACAATATTGATCATACTAT
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGGTAATAT
* * * * * *
22229554 GTCATCAAAATGATCATTATTCTTTGACAAA-TGATTACATGGATTCAAAGGCATGATAAACTTA
66 GTTATCAAAATAAT-ATTATTCATTGATAAACT-ATTACA-AGATTCGAAGGCATGATAAACTTA
* * *
22229618 AAATGCTCTTTTCTTTTCAACT-AATAGCATCCACTTCACGTTTCCCAATGAAAACATCTAATTA
128 AAATGCTCTTTTC-TTTCAAATGGATAGCATCCACTTCACGTTTCCCAATGAAAACATCCAATTA
* *
22229682 TGATCATTTTTATTCAAGAAAAACAAAGCTTTTGATTTATTTTTTTAGTTATAATCATTTACAAA
192 TGATCAGTTTTAATCAAGAAAAACAAAGCTTTTGATTTATTTTTTTAGTTATAATCATTTACAAA
* * *
22229747 AATTTAACTGAATTATATATCACAATATTGATGATAATATGTTATCCAAATGATAATTATTCATT
257 AATTTAAATGAATTATATATCACAACATTGATGATAATATGTTATCAAAATGATAATTATTCATT
* * * * *
22229812 GATAAATAGTTACAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTGTCTTCTTAATGGATA
322 GATAAACAATTACAAGCTTTCAAAGGCATGACAAACTTAAAATGCACTTGTCTTCTTAATAGATA
* * * * * * *
22229877 CCATCCATTTCACATTTCGCAATGCCAACATCCATTTATGATAGGTTTGAACCAAGAACAATAAT
387 CCATCCATCTCACATTTCCCAATACCAACATCCAATTATGATAGCTTTGAAACAAGAACAATAAA
22229942 ACTTCCAATTTA
452 ACTTCCAATTTA
* * * * *
22229954 TCTTCGACTTATAATCATTTTTAAGATTTTAAATGAATTATTTATCATAATATTGATGGTAATAT
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGGTAATAT
* *
22230019 GTTATTAAAATAATATTTATTCATTGATAAACTATTACAAGATTTCGAAGGCATGATAAATTTAA
66 GTTATCAAAATAATA-TTATTCATTGATAAACTATTACAAGA-TTCGAAGGCATGATAAACTTAA
*** * ** * *
22230084 AATGCTCTTTTCTTAT-AAATGGATAGCATTTGCTTCACTTTTTTCACT-ATAAACATCCAATTT
129 AATGCTCTTTTCTT-TCAAATGGATAGCATCCACTTCACGTTTCCCAATGA-AAACATCCAATTA
* * *
22230147 TGAT-AGGTTTTAATCAAGAACAACAAAGTTTTTGATTTA-TTTTTTATTTATAATCA-TT-CAT
192 TGATCA-GTTTTAATCAAGAAAAACAAAGCTTTTGATTTATTTTTTTAGTTATAATCATTTACA-
* * * * *
22230208 TAGATTATAAATGAATTATATATCATAACATTGATGATAATATGTTATTAAAATGTTAATTATTC
255 AAAATT-TAAATGAATTATATATCACAACATTGATGATAATATGTTATCAAAATGATAATTATTC
* * * *
22230273 ATTTGATAAACAATTATAGGCTTTCAAAGGCATGACAAACTTAAAATGCACTT-TTTTGTTAATA
319 A-TTGATAAACAATTACAAGCTTTCAAAGGCATGACAAACTTAAAATGCACTTGTCTTCTTAATA
* * * * *
22230337 GATAGCATCCA-CTCTACGTTTCCCTATACCAACATCCAATTATGATAGCTTTTAAACAAG-GCA
383 GATACCATCCATCTC-ACATTTCCCAATACCAACATCCAATTATGATAGCTTTGAAACAAGAACA
22230400 A-ACAAAGCTTTCC-ATTTA
447 ATA-AAA-C-TTCCAATTTA
*
22230418 TTTTCGATTTATAATCATTTATAAGATTATAAATGAAATATATATCATAATATTG-TGGATAATA
1 TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGG-TAATA
* * * * * * * *
22230482 TTTTATCAAAATATTAAATATTCATTGGTAAACCATTACAAGCATTGGAAAGCATGGTAAACTTA
65 TGTTATCAAAATAAT-ATTATTCATTGATAAACTATTACAAG-ATTCGAAGGCATGATAAACTTA
* * *
22230547 AAATGCTCTTTTCTTTCCAATGGATAGCATCCACATCACATTTCCCAATG
128 AAATGCTCTTTTCTTTCAAATGGATAGCATCCACTTCACGTTTCCCAATG
22230597 CAAGTATGTC
Statistics
Matches: 533, Mismatches: 90, Indels: 39
0.81 0.14 0.06
Matches are distributed among these distances:
462 3 0.01
463 17 0.03
464 286 0.54
465 226 0.42
466 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (463 bp):
TTTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGGTAATAT
GTTATCAAAATAATATTATTCATTGATAAACTATTACAAGATTCGAAGGCATGATAAACTTAAAA
TGCTCTTTTCTTTCAAATGGATAGCATCCACTTCACGTTTCCCAATGAAAACATCCAATTATGAT
CAGTTTTAATCAAGAAAAACAAAGCTTTTGATTTATTTTTTTAGTTATAATCATTTACAAAAATT
TAAATGAATTATATATCACAACATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATA
AACAATTACAAGCTTTCAAAGGCATGACAAACTTAAAATGCACTTGTCTTCTTAATAGATACCAT
CCATCTCACATTTCCCAATACCAACATCCAATTATGATAGCTTTGAAACAAGAACAATAAAACTT
CCAATTTA
Found at i:22244753 original size:232 final size:231
Alignment explanation
Indices: 22244331--22246555 Score: 2320
Period size: 232 Copynumber: 9.6 Consensus size: 231
22244321 GCAAATAGTA
* ** * *
22244331 TTCGATTTACTTTCAATTTATAGTCATTTATAAGATTATAAATGAATTAAATATCATAAATATTG
1 TTCGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCAT-AATATTG
* ** * *
22244396 ATCATAATATGTTATTGAAATGATAATTATTCATTGATAAACCATTATAAGCCTTT-GAAAGCAT
65 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAG-CTTTCGAAGGCAT
* *
22244460 GATAAACTTAAAATGCTCTTTTCTTTTCAATGAATAGCATCCACTTGACGTTTTCCAATGCAAAC
129 GATAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACG-TTTCCAATGCAAAC
**
22244525 ATCCAATTATGATAGGTTTTAATGAAGAACAACAAAGCT
193 ATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
* * *
22244564 TTCGATTTATTTTTGATTTATAATCATTTACAAGAATT-TAAATGAATTATATATTATAACATTG
1 TTCGATTTATTTTTGATTTATAATCATTTATAAG-ATTATAAATGAATTATATATCATAATATTG
* * * * * *
22244628 ATGATAATATGTTATCCAAATGACAATTATTCATTGATAAATCGTTACAAGCATTCAAAGGCATG
65 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCATG
* * * * * *
22244693 ATAAACTTAAAATGCTCTTGTATTTTTAATGGATAGCATCCATTTCATGTTTCACAATGC-AGCA
130 ATAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTTC-CAATGCAAACA
22244757 TCC-ATTGATGATAGGTTTTAACCAAGAACAACAATA-CT
194 TCCAATT-ATGATAGGTTTTAACCAAGAACAACAA-AGCT
* * * * * * *
22244795 TTCGATTTATCTATGATTCATAATCAATTATAAGATTATATATGAATTATATATTATAATATAGA
1 TTCGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * *
22244860 TGACAATATGTTATCAAAACGATAATTATTCATTGATAAACCATTACAAACATTCGAAGGCATGA
66 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCATGA
* * * * *** * * *
22244925 TATACTTAAAATTCTATTTTATTTTCAATGGATAGCATCTGTTTGATGTTTCCTAATGTAAACAT
131 TAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTTCC-AATGCAAACAT
* **
22244990 CCAATTATGTTAGGTTTTAATTAAGAACAACATAA-CTT
195 CCAATTATGATAGGTTTTAACCAAGAACAACA-AAGC-T
* ** * * *
22245028 TTCTATTTATTGCCT-ATTTATAAAT-ATTTATAAAATTATAAATGAATTATATAACATGATATT
1 TTCGATTTATT-TTTGATTTAT-AATCATTTATAAGATTATAAATGAATTATATATCATAATATT
* * * * * * *
22245091 CATGATAATATGTTATCAAAATGTTAATTATTCATTTAAAAACCATTCCAAGCTTTCTAAAGCAT
64 GATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCAT
* * *
22245156 GATAAACTT-AAATGCAT-TTTTCTTGTCAATGGATAGCATCCACTTCATGTTTGCCAATGCAAG
129 GATAAACTTAAAATGC-TCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTT-CCAATGCAAA
* * **
22245219 CATCCAACTGTGATAGGTTTTAACCAAGAACAATGAA-CTT
192 CATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGC-T
* *
22245259 TTCCATTTATTTTCT-ATTTATAATCCTTTATAAGATTATAAATGAATTACATATATCATAATAT
1 TTCGATTTATTTT-TGATTTATAATCATTTATAAGATTATAAATGAATT--ATATATCATAATAT
* * * * *
22245323 TGATGAGAATATGTTATCAAAAGGATAATTATTTATTGATAAACCATGACAAG-TATTTGAAGGC
63 TGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCT-TTCGAAGGC
* * * *
22245387 TTGATAAACTTAAAATGCTCTTTTCTTTTTAATGGATAACATCCACTTCATGTTTCCCAATGCAA
127 ATGATAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTT-CCAATGCAA
* * *
22245452 ACATCCAATTATGATAGGTTTTAATCATGAACAATAAAGCT
191 ACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
* * * * * *
22245493 TTCAATTTA-TTTTGATTTATAAACATTTACAAGATCATAAATGAACTACATATCATAATATTGA
1 TTCGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA
* * *
22245557 TGATAATATGTTACCAAAATGATAATTATTTATTGATAAACCATTACAGGCTTTCGAAGGCATGA
66 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCATGA
* * * * * * * *
22245622 TAAACATAAAATGTTGTTTTCTTCTCAATGGATAGCTTCCACTCCACGTTT-CATAGCGCAAATA
131 TAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTTCCA-A-TGCAAACA
* * *
22245686 -CTCAATCATGATAGGTTATAATCAAGAACAACAAAGCT
194 TC-CAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
* ** *
22245724 TTACG-TTTGTTTTCAATTTATAATAATTTATAAGATTATAAATGAATTATATATATCATAATAT
1 TT-CGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAA-T-TATATATCATAATAT
* * * *
22245788 TGATGATAATATGTTATCAAAATGGTAACTATTCATTGATAAATCATTACAAGCTTTC-AAAGCT
63 TGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGC-
* * * * * * *
22245852 ATGATAAACTTAAAATACACATTTATTGTCAATGGATAACATCCACTTCACGTTTCCTAATGCCA
127 ATGATAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTTCC-AATGCAA
* * *
22245917 ACATTCAATTATGATAGGTTTTAGCCAAGAACAACAAAACT
191 ACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
** ** * * *
22245958 TTCCTTTTATTTTCCATTCATAATCATTTAGAAGGA-TATAAATGAATTATACATCATAATATTG
1 TTCGATTTATTTTTGATTTATAATCATTTATAA-GATTATAAATGAATTATATATCATAATATTG
* * * * * * * * *
22246022 TTGATAAGATATTATCAAAATGGTAATTATTCATTCATAAATCATTGCAAGCATTCGAAGGCATT
65 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCATG
* * * * ** *
22246087 ATCAA-TGTAAAACGCTCTTTTCTTTTCAATCGATAGTATCCACTTCACGTTTCCCAAAACAAGC
130 ATAAACT-TAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTT-CCAATGCAAAC
22246151 ATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
193 ATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
* * * * *
22246190 TTTGATTTATTTTCGATTTAAAATCATTTTTAAGATTATAAATGAATTATATATCATAATATTTA
1 TTCGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * *
22246255 TG-TCAATATGCTATCTAAATGATAATTATTCATTGATAAACAATTACAGGCTTTCGAAGGCATG
66 TGAT-AATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCATG
* * *
22246319 ATAAACTTAAAATGTTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTCCCTAATGCAAACA
130 ATAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTTCC-AATGCAAACA
*
22246384 TCCAATTATGATAGGTTTTAACCAAGAACAATAAAGCT
194 TCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
* * * *
22246422 TTCGATTTA----T-A---AT-A--GTTTACAAGATTATAAATGAATTATATATCATAATGTTTA
1 TTCGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA
* * ** * * * * * * * *
22246476 TGATAAAATGTTACCTGAACGATAATTATTTAATGATAAACCATTAGATG-TTTCAAATGGTATC
66 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAA-GGCATG
22246540 ATAAACTTAAAATGCT
130 ATAAACTTAAAATGCT
22246556 ATTGTAGTAC
Statistics
Matches: 1664, Mismatches: 281, Indels: 106
0.81 0.14 0.05
Matches are distributed among these distances:
220 6 0.00
221 93 0.06
222 1 0.00
223 1 0.00
224 1 0.00
227 1 0.00
229 2 0.00
230 12 0.01
231 404 0.24
232 583 0.35
233 278 0.17
234 276 0.17
235 5 0.00
236 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (231 bp):
TTCGATTTATTTTTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA
TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCGAAGGCATGA
TAAACTTAAAATGCTCTTTTCTTTTCAATGGATAGCATCCACTTCACGTTTCCAATGCAAACATC
CAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
Found at i:22245715 original size:697 final size:691
Alignment explanation
Indices: 22244344--22246554 Score: 2493
Period size: 697 Copynumber: 3.2 Consensus size: 691
22244334 GATTTACTTT
* * * * *
22244344 CAATTTATAGTCATTTATAAGATTATAAATGAATTAAATATCATAAATATTGATCATAATATGTT
1 CAATTTATAATAATTTATAAGATTATAAATGAATTATATAACAT-AATATTGATGATAATATGTT
** * *
22244409 ATTGAAATGATAATTATTCATTGATAAACCATTATAAGCCTTTGAAAGCATGATAAACTTAAAAT
65 ATCAAAATGATAATTATTCATTGATAAACCATTACAAG-CTTTCAAAGCATGATAAACTTAAAAT
* * *
22244474 GC-TCTTTTCTTTTCAATGAATAGCATCCACTTGACGTTTTCCAATGCAAACATCCAATTATGAT
129 GCAT-TTTTCTTGTCAATGGATAGCATCCACTTCACG-TTTCCAATGC-AACATCCAATTATGAT
** * *
22244538 AGGTTTTAATGAAGAACAACAAAGCTTTCGATTTATTTT-TGATTTATAATCATTTACAAGAATT
191 AGGTTTTAACCAAGAACAA-AAAACTTTCCATTTATTTTCT-ATTTATAATCATTTACAAG-ATT
* * * * *
22244602 -TAAATGAATTATATATTATAACATTGATGATAATATGTTATCCAAATGACAATTATTCATTGAT
253 ATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAAGGATAATTATTCATTGAT
* * * * * *
22244666 AAATCGTTACAAGCATTCAAAGGCATGATAAACTTAAAATGCTCTTGTATTTTTAATGGATAGCA
318 AAATCATGACAAGCATTCGAAGGCTTGATAAACTTAAAATGCTCTTTTCTTTTTAATGGATAGCA
* *
22244731 TCCATTTCATGTTTCACAATGC-AGCATCC-ATTGATGATAGGTTTTAACCAAGAACAACAATA-
383 TCCACTTCATGTTTCCCAATGCAAGCATCCAATT-ATGATAGGTTTTAACCAAGAACAACAA-AG
* * * * * * *
22244793 CTTTCGATTTATCTATGATTCATAATCAATTATAAGATTATATATGAATTATATATTATAATATA
446 CTTTCGATTTAT-TTTGATTTATAAACATTTATAAGATTATAAATGAATTATATATCATAATATT
* * ** *
22244858 GATGACAATATGTTATCAAAACGATAATTATTCATTGATAAACCATTACAAACATTCGAAGGCAT
510 GATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAGGCTTTCGAAGGCAT
* * * *** * * *
22244923 GATATACTTAAAAT-TCTATTTTATTTTCAATGGATAGCATCTGTTTGATGTTTCCTAATGTAAA
575 GATAAACTTAAAATGT-TATTTTCTTCTCAATGGATAGCATCCACTTCACGTTTCCTAATGCAAA
* * *
22244987 CATCCAATTATGTTAGGTTTTAATTAAGAACAACATAA-CTTTTCTATTTATTGC
639 CATCCAATTATGATAGGTTTTAATCAAGAACAACA-AAGCTTTAC-ATTTATTGC
* * * *
22245041 CTATTTATAA-ATATTTATAAAATTATAAATGAATTATATAACATGATATTCATGATAATATGTT
1 CAATTTATAATA-ATTTATAAGATTATAAATGAATTATATAACATAATATTGATGATAATATGTT
* * * *
22245105 ATCAAAATGTTAATTATTCATTTAAAAACCATTCCAAGCTTTCTAAAGCATGATAAACTT-AAAT
65 ATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTC-AAAGCATGATAAACTTAAAAT
* * *
22245169 GCATTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTGCCAATGCAAGCATCCAACTGTGATA
129 GCATTTTTCTTGTCAATGGATAGCATCCACTTCACGTTT-CCAATGCAA-CATCCAATTATGATA
** * *
22245234 GGTTTTAACCAAGAACAATGAACTTTTCCATTTATTTTCTATTTATAATCCTTTATAAGATTATA
192 GGTTTTAACCAAGAACAAAAAAC-TTTCCATTTATTTTCTATTTATAATCATTTACAAGATTATA
* *
22245299 AATGAATTACATATATCATAATATTGATGAGAATATGTTATCAAAAGGATAATTATTTATTGATA
256 AATGAATT--ATATATCATAATATTGATGATAATATGTTATCAAAAGGATAATTATTCATTGATA
* * * *
22245364 AACCATGACAAGTATTTGAAGGCTTGATAAACTTAAAATGCTCTTTTCTTTTTAATGGATAACAT
319 AATCATGACAAGCATTCGAAGGCTTGATAAACTTAAAATGCTCTTTTCTTTTTAATGGATAGCAT
* * * *
22245429 CCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTAATCATGAACAATAAAGCTT
384 CCACTTCATGTTTCCCAATGCAAGCATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTT
* * * * *
22245494 TCAATTTATTTTGATTTATAAACATTTACAAGATCATAAATGAACTACATATCATAATATTGATG
449 TCGATTTATTTTGATTTATAAACATTTATAAGATTATAAATGAATTATATATCATAATATTGATG
* *
22245559 ATAATATGTTACCAAAATGATAATTATTTATTGATAAACCATTACAGGCTTTCGAAGGCATGATA
514 ATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAGGCTTTCGAAGGCATGATA
* * * * * ** *
22245624 AACATAAAATGTTGTTTTCTTCTCAATGGATAGCTTCCACTCCACGTTTCATAGCGCAAATA-CT
579 AACTTAAAATGTTATTTTCTTCTCAATGGATAGCATCCACTTCACGTTTCCTAATGCAAACATC-
* * * * **
22245688 CAATCATGATAGGTTATAATCAAGAACAACAAAGCTTTACGTTTGTTTT
643 CAATTATGATAGGTTTTAATCAAGAACAACAAAGCTTTACATTTATTGC
22245737 CAATTTATAATAATTTATAAGATTATAAATGAATTATATATATCATAATATTGATGATAATATGT
1 CAATTTATAATAATTTATAAGATTATAAATGAATTATATA-A-CATAATATTGATGATAATATGT
* * *
22245802 TATCAAAATGGTAACTATTCATTGATAAATCATTACAAGCTTTCAAAGCTATGATAAACTTAAAA
64 TATCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGC-ATGATAAACTTAAAA
* ** * * *
22245867 TACACATTTATTGTCAATGGATAACATCCACTTCACGTTTCCTAATGCCAACATTCAATTATGAT
128 TGCATTTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCC-AATG-CAACATCCAATTATGAT
* * * * *
22245932 AGGTTTTAGCCAAGAACAACAAAACTTTCCTTTTATTTTCCATTCATAATCATTTAGAAGGA-TA
191 AGGTTTTAACCAAGAACAA-AAAACTTTCCATTTATTTTCTATTTATAATCATTTACAA-GATTA
* * * * *
22245996 TAAATGAATTATACATCATAATATTGTTGATAAGATATTATCAAAATGG-TAATTATTCATTCAT
254 TAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAA-GGATAATTATTCATTGAT
* * * *
22246060 AAATCATTG-CAAGCATTCGAAGGCATT-ATCAA-TGTAAAACGCTCTTTTCTTTTCAATCGATA
318 AAATCA-TGACAAGCATTCGAAGGC-TTGATAAACT-TAAAATGCTCTTTTCTTTTTAATGGATA
* * **
22246122 GTATCCACTTCACGTTTCCCAAAACAAGCATCCAATTATGATAGGTTTTAACCAAGAACAACAAA
380 GCATCCACTTCATGTTTCCCAATGCAAGCATCCAATTATGATAGGTTTTAACCAAGAACAACAAA
* *
22246187 GCTTTTGATTTATTTTCGATTTA-AAATCATTTTTAAGATTATAAATGAATTATATATCATAATA
445 GCTTTCGATTTATTTT-GATTTATAAA-CATTTATAAGATTATAAATGAATTATATATCATAATA
* * * *
22246251 TTTATG-TCAATATGCTATCTAAATGATAATTATTCATTGATAAACAATTACAGGCTTTCGAAGG
508 TTGATGAT-AATATGTTATCAAAATGATAATTATTCATTGATAAACCATTACAGGCTTTCGAAGG
* * *
22246315 CATGATAAACTTAAAATGTTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTCCCTAATGCA
572 CATGATAAACTTAAAATGTTATTTTCTTCTCAATGGATAGCATCCACTTCACGTTTCCTAATGCA
* *
22246380 AACATCCAATTATGATAGGTTTTAACCAAGAACAATAAAGCTTT-C-------G-
637 AACATCCAATTATGATAGGTTTTAATCAAGAACAACAAAGCTTTACATTTATTGC
* * * * * *
22246426 --ATTTATAATAGTTTACAAGATTATAAATGAATTATATATCATAATGTTTATGATAAAATGTTA
1 CAATTTATAATAATTTATAAGATTATAAATGAATTATATAACATAATATTGATGATAATATGTTA
* ** * * * * * * *
22246489 CCTGAACGATAATTATTTAATGATAAACCATTAGATG-TTTCAAATGGTATCATAAACTTAAAAT
66 TCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAA--GCATGATAAACTTAAAAT
22246553 GC
129 GC
22246555 TATTGTAGTA
Statistics
Matches: 1282, Mismatches: 197, Indels: 82
0.82 0.13 0.05
Matches are distributed among these distances:
684 7 0.01
685 63 0.05
686 1 0.00
687 36 0.03
694 10 0.01
695 114 0.09
696 111 0.09
697 511 0.40
698 306 0.24
699 115 0.09
700 8 0.01
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (691 bp):
CAATTTATAATAATTTATAAGATTATAAATGAATTATATAACATAATATTGATGATAATATGTTA
TCAAAATGATAATTATTCATTGATAAACCATTACAAGCTTTCAAAGCATGATAAACTTAAAATGC
ATTTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCCAATGCAACATCCAATTATGATAGGTT
TTAACCAAGAACAAAAAACTTTCCATTTATTTTCTATTTATAATCATTTACAAGATTATAAATGA
ATTATATATCATAATATTGATGATAATATGTTATCAAAAGGATAATTATTCATTGATAAATCATG
ACAAGCATTCGAAGGCTTGATAAACTTAAAATGCTCTTTTCTTTTTAATGGATAGCATCCACTTC
ATGTTTCCCAATGCAAGCATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTCGATTT
ATTTTGATTTATAAACATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
GTTATCAAAATGATAATTATTCATTGATAAACCATTACAGGCTTTCGAAGGCATGATAAACTTAA
AATGTTATTTTCTTCTCAATGGATAGCATCCACTTCACGTTTCCTAATGCAAACATCCAATTATG
ATAGGTTTTAATCAAGAACAACAAAGCTTTACATTTATTGC
Found at i:22247983 original size:42 final size:42
Alignment explanation
Indices: 22247944--22248023 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
22247934 TATTGACTTG
22247944 GCTATGTGCCAGTAGGAGTGCACATAAGCCGATGATGACTCA
1 GCTATGTGCCAGTAGGAGTGCACATAAGCCGATGATGACTCA
* * *
22247986 GCTATGTGCGAGTGGGAGTGCGCATAAGCCGATGATGA
1 GCTATGTGCCAGTAGGAGTGCACATAAGCCGATGATGA
22248024 TGATGACCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.21
Consensus pattern (42 bp):
GCTATGTGCCAGTAGGAGTGCACATAAGCCGATGATGACTCA
Found at i:22264887 original size:3 final size:3
Alignment explanation
Indices: 22264879--22264904 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22264869 AGAGCTCAAG
22264879 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
22264905 CTGAAGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22288625 original size:74 final size:74
Alignment explanation
Indices: 22288547--22288744 Score: 263
Period size: 74 Copynumber: 2.7 Consensus size: 74
22288537 CAGACAAAAT
*
22288547 GCTCTTAGTTGACTAACTATGCTTCTTAGTAGATTAAGTCTTCTTTGTCTTGAAATTGAAATTTC
1 GCTCTTAGTTGACTAACCATGCTTCTTAGTAGATTAAGTCTTCTTTGTCTTGAAATTGAAATTTC
*
22288612 TGGCAGTGA
66 TAGCAGTGA
* * * * * *
22288621 GCTCTTAGTTGACTAACCGTGCTTCTTAGTTGGTTAAGT-TCTCTCTGTCTTGTAATTGAGATTT
1 GCTCTTAGTTGACTAACCATGCTTCTTAGTAGATTAAGTCT-TCTTTGTCTTGAAATTGAAATTT
*
22288685 CTAGCAGTGT
65 CTAGCAGTGA
* ** *
22288695 GCTCTTAGTTGACTAACCATGCTTCTAAGCCGACTAAGTCTTCTTTGTCT
1 GCTCTTAGTTGACTAACCATGCTTCTTAGTAGATTAAGTCTTCTTTGTCT
22288745 GACAATCTGC
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
73 1 0.01
74 104 0.98
75 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (74 bp):
GCTCTTAGTTGACTAACCATGCTTCTTAGTAGATTAAGTCTTCTTTGTCTTGAAATTGAAATTTC
TAGCAGTGA
Found at i:22289501 original size:23 final size:23
Alignment explanation
Indices: 22289471--22289545 Score: 107
Period size: 23 Copynumber: 3.2 Consensus size: 23
22289461 TCCTAAATTA
22289471 CCCTTAAATTACTTTTACTTTCT
1 CCCTTAAATTACTTTTACTTTCT
22289494 CCCTTAAATTA-TTTCTACTTTCT
1 CCCTTAAATTACTTT-TACTTTCT
* *
22289517 CCCCTAAATTACTTCTACTTTCTT
1 CCCTTAAATTACTTTTACTTTC-T
22289541 CCCTT
1 CCCTT
22289546 TTTTGTCACC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
22 3 0.07
23 36 0.78
24 7 0.15
ACGTcount: A:0.20, C:0.31, G:0.00, T:0.49
Consensus pattern (23 bp):
CCCTTAAATTACTTTTACTTTCT
Found at i:22292101 original size:27 final size:27
Alignment explanation
Indices: 22292071--22292156 Score: 63
Period size: 27 Copynumber: 3.1 Consensus size: 27
22292061 ATATAGACCA
22292071 CCACCAGTCATCAGCTCATGTGCACTC
1 CCACCAGTCATCAGCTCATGTGCACTC
* * * *
22292098 CCACACCGAACAT-GGCTGGCAT-TACGAC--
1 CCAC-CAG-TCATCAGCT--CATGTGC-ACTC
22292126 CCACCAGTCATCAGCTCATGTGCACTC
1 CCACCAGTCATCAGCTCATGTGCACTC
22292153 CCAC
1 CCAC
22292157 ACTGCACATA
Statistics
Matches: 42, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
25 5 0.12
26 5 0.12
27 13 0.31
28 9 0.21
29 5 0.12
30 5 0.12
ACGTcount: A:0.24, C:0.41, G:0.16, T:0.19
Consensus pattern (27 bp):
CCACCAGTCATCAGCTCATGTGCACTC
Found at i:22292104 original size:29 final size:29
Alignment explanation
Indices: 22292072--22292158 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
22292062 TATAGACCAC
22292072 CACCAGTCATCAGCTCATGTGCACTCCCA
1 CACCAGTCATCAGCTCATGTGCACTCCCA
* * **
22292101 CACC-GAACAT-GGCTGGCAT-T--ACGACC-
1 CACCAG-TCATCAGCT--CATGTGCACTCCCA
22292127 CACCAGTCATCAGCTCATGTGCACTCCCA
1 CACCAGTCATCAGCTCATGTGCACTCCCA
22292156 CAC
1 CAC
22292159 TGCACATAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 18
0.61 0.12 0.27
Matches are distributed among these distances:
25 3 0.07
26 8 0.20
27 8 0.20
28 8 0.20
29 11 0.27
30 3 0.07
ACGTcount: A:0.25, C:0.40, G:0.16, T:0.18
Consensus pattern (29 bp):
CACCAGTCATCAGCTCATGTGCACTCCCA
Found at i:22292116 original size:56 final size:54
Alignment explanation
Indices: 22292025--22292172 Score: 217
Period size: 55 Copynumber: 2.7 Consensus size: 54
22292015 CCAACGGTCC
*
22292025 TCAGCTCATGTGCCCTCCCACACCGCACATAGCTGGATATA-GACCACCACCAGTCA
1 TCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAT-TACGA-C-CCACCAGTCA
* *
22292081 TCAGCTCATGTGCACTCCCACACCGAACATGGCTGGCATTACGACCCACCAGTCA
1 TCAGCTCATGTGCACTCCCACACCGCACATAGCTGG-ATTACGACCCACCAGTCA
*
22292136 TCAGCTCATGTGCACTCCCACACTGCACATAGCTGGA
1 TCAGCTCATGTGCACTCCCACACCGCACATAGCTGGA
22292173 ATCACCCGTC
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
54 1 0.01
55 43 0.51
56 36 0.43
57 4 0.05
ACGTcount: A:0.26, C:0.38, G:0.18, T:0.19
Consensus pattern (54 bp):
TCAGCTCATGTGCACTCCCACACCGCACATAGCTGGATTACGACCCACCAGTCA
Found at i:22296969 original size:35 final size:35
Alignment explanation
Indices: 22296901--22296973 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
22296891 TTTACTCAGC
*
22296901 TCATGTGCACTCCCTACACGCACAAGGCCATATCA
1 TCATGTGCACTCCCTACACGCACAAGGCAATATCA
* ***
22296936 TCATGTGCACTCCCTACATGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACGCACAAGGCAATATCA
22296971 TCA
1 TCA
22296974 CACGTACTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (35 bp):
TCATGTGCACTCCCTACACGCACAAGGCAATATCA
Found at i:22297029 original size:19 final size:19
Alignment explanation
Indices: 22297005--22297048 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22296995 TTACTGGCAT
22297005 GTGCACACCCACACCGCAC
1 GTGCACACCCACACCGCAC
* *
22297024 GTGCACTCTCACACCGCAC
1 GTGCACACCCACACCGCAC
*
22297043 ATGCAC
1 GTGCAC
22297049 GATTTTAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.25, C:0.48, G:0.16, T:0.11
Consensus pattern (19 bp):
GTGCACACCCACACCGCAC
Found at i:22298658 original size:43 final size:43
Alignment explanation
Indices: 22298605--22298729 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 43
22298595 TCATTCATCA
* *
22298605 TCATGTGCACTCCCTACACGCACATAACC-GAGTCATCATCGGC
1 TCATGCGCACTCCCTACACGCACATAACCTG-GTCATCATCAGC
* *
22298648 TTATGCGCACTCCCTAC-CGGCACATAGCCTGGTCATCATCAGC
1 TCATGCGCACTCCCTACAC-GCACATAACCTGGTCATCATCAGC
* *
22298691 TCATGTGCACTCCC-ACATCGCACAT-AGCTGGGTCATCAT
1 TCATGCGCACTCCCTACA-CGCACATAACCT-GGTCATCAT
22298730 TATCACACAA
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
42 5 0.07
43 62 0.90
44 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (43 bp):
TCATGCGCACTCCCTACACGCACATAACCTGGTCATCATCAGC
Found at i:22299957 original size:21 final size:20
Alignment explanation
Indices: 22299929--22299969 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
22299919 TGAAATGATT
22299929 TTGGTGAT-TTTAAAAGGTTA
1 TTGGTGATATTT-AAAGGTTA
22299949 TTGGCTGATATTTAAAGGTTA
1 TTGG-TGATATTTAAAGGTTA
22299970 GAAATGTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 12 0.63
22 3 0.16
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.44
Consensus pattern (20 bp):
TTGGTGATATTTAAAGGTTA
Found at i:22302211 original size:2 final size:2
Alignment explanation
Indices: 22302204--22302249 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
22302194 ATGGAAAGTA
22302204 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22302246 CT CT
1 CT CT
22302250 AAAATGTCCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:22303675 original size:19 final size:19
Alignment explanation
Indices: 22303651--22303689 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
22303641 GGTAGGAAGG
22303651 TGAAAATAGCATGGGAGCA
1 TGAAAATAGCATGGGAGCA
* *
22303670 TGAAAATGGCGTGGGAGCA
1 TGAAAATAGCATGGGAGCA
22303689 T
1 T
22303690 AAAGGAGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.36, T:0.18
Consensus pattern (19 bp):
TGAAAATAGCATGGGAGCA
Found at i:22311879 original size:40 final size:38
Alignment explanation
Indices: 22311835--22311940 Score: 131
Period size: 38 Copynumber: 2.7 Consensus size: 38
22311825 CACACCCGAC
* * * *
22311835 TCATGTACATCCCCCCACATCATGCATATAGCCGGTGCCA
1 TCATGTGCATCCCCCCACATCGTGCACA-A-CCAGTGCCA
* *
22311875 TCATGTGCATCCCCCCACATTGTGCACAATCAGTGCCA
1 TCATGTGCATCCCCCCACATCGTGCACAACCAGTGCCA
*
22311913 TCCTGTGCATCCCCCCACATCGTGCACA
1 TCATGTGCATCCCCCCACATCGTGCACA
22311941 CGGGCACTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 33 0.57
39 1 0.02
40 24 0.41
ACGTcount: A:0.23, C:0.40, G:0.15, T:0.23
Consensus pattern (38 bp):
TCATGTGCATCCCCCCACATCGTGCACAACCAGTGCCA
Found at i:22312364 original size:129 final size:129
Alignment explanation
Indices: 22312134--22312391 Score: 471
Period size: 129 Copynumber: 2.0 Consensus size: 129
22312124 ATAAAACCAT
22312134 TTAGCAAAAGCTTGTTCCCAAGACACTTGTTTTAAGATAAAGTTATATAAAATCATTCAAATGCT
1 TTAGCAAAAGCTTGTTCCCAAGACACTTGTTTTAAGATAAAGTTATATAAAATCATTCAAATGCT
* * * *
22312199 TTGTACAGAACAGTCACATTCCCAAAATGATTTTGAAATGCATTTCACTCACTTGACAAAACTA
66 TTGCACAAAACAGTCACATTCCCAAAATGATTTTGAAATGCAGTTCACTCACCTGACAAAACTA
*
22312263 TTAGCAAAAGCTTGTTCCCAAGACACTTGTTTTAAGATAAAGTTGTATAAAATCATTCAAATGCT
1 TTAGCAAAAGCTTGTTCCCAAGACACTTGTTTTAAGATAAAGTTATATAAAATCATTCAAATGCT
22312328 TTGCACAAAACAGTCACATTCCCAAAATGATTTTGAAATGCAGTTCACTCACCTGACAAAACTA
66 TTGCACAAAACAGTCACATTCCCAAAATGATTTTGAAATGCAGTTCACTCACCTGACAAAACTA
22312392 GCACCAACAA
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 124 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (129 bp):
TTAGCAAAAGCTTGTTCCCAAGACACTTGTTTTAAGATAAAGTTATATAAAATCATTCAAATGCT
TTGCACAAAACAGTCACATTCCCAAAATGATTTTGAAATGCAGTTCACTCACCTGACAAAACTA
Found at i:22319539 original size:36 final size:35
Alignment explanation
Indices: 22319422--22319601 Score: 233
Period size: 36 Copynumber: 5.2 Consensus size: 35
22319412 CAAGCTCATG
*
22319422 ATTAAAATTGTTTAATTAAGT--TTTGCCTAATTA
1 ATTAAAATTGTTTAATTAAGTCATTGGCCTAATTA
* *
22319455 ATT-AAATTATTTAATTAAGCCATTGGCCTAATTA
1 ATTAAAATTGTTTAATTAAGTCATTGGCCTAATTA
*
22319489 ATT-AAATTGTTTAATTAAGTCATTAGGCCTAGTTA
1 ATTAAAATTGTTTAATTAAGTCATT-GGCCTAATTA
**
22319524 ATTAAAATTGTTTAATTAAGTCATTGGGCCTAATCG
1 ATTAAAATTGTTTAATTAAGTCATT-GGCCTAATTA
* *
22319560 ATTAAAATTGTTTAATTAAGTTATTGGGCCTAATTG
1 ATTAAAATTGTTTAATTAAGTCATT-GGCCTAATTA
22319596 ATTAAA
1 ATTAAA
22319602 TTAAACAATT
Statistics
Matches: 131, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
32 15 0.11
33 3 0.02
34 33 0.25
35 12 0.09
36 68 0.52
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (35 bp):
ATTAAAATTGTTTAATTAAGTCATTGGCCTAATTA
Found at i:22319612 original size:35 final size:36
Alignment explanation
Indices: 22319537--22319617 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 36
22319527 AAAATTGTTT
* ****
22319537 AATTAAGTCATTGGGCCTAATCGATTAAAATTGTTT
1 AATTAAGTTATTGGGCCTAATCGATTAAAATTAAAC
*
22319573 AATTAAGTTATTGGGCCTAATTGATT-AAATTAAAC
1 AATTAAGTTATTGGGCCTAATCGATTAAAATTAAAC
22319608 AATTAAGTTA
1 AATTAAGTTA
22319618 ACTGGGCTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
35 15 0.38
36 24 0.62
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (36 bp):
AATTAAGTTATTGGGCCTAATCGATTAAAATTAAAC
Found at i:22321184 original size:21 final size:21
Alignment explanation
Indices: 22321152--22321210 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
22321142 CAAAGCTTCC
22321152 AAAG-GAGAAAGAAGAAATGAA
1 AAAGAGAGAAAGAAGAAA-GAA
22321173 AGAA-AGA-AAAG-AGAAAGAA
1 A-AAGAGAGAAAGAAGAAAGAA
22321192 AAAGAGAGAAAGGAAGAAA
1 AAAGAGAGAAA-GAAGAAA
22321211 AAGCTTGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
18 2 0.06
19 7 0.22
20 8 0.25
21 6 0.19
22 9 0.28
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (21 bp):
AAAGAGAGAAAGAAGAAAGAA
Found at i:22321201 original size:14 final size:15
Alignment explanation
Indices: 22321157--22321211 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
22321147 CTTCCAAAGG
22321157 AGAAAGAAGAA-ATGAA
1 AGAAAGAA-AAGA-GAA
22321173 AGAAAGAAAAGAGAA
1 AGAAAGAAAAGAGAA
*
22321188 AGAAA-AAGAGAGAA
1 AGAAAGAAAAGAGAA
*
22321202 AGGAAGAAAA
1 AGAAAGAAAA
22321212 AGCTTGGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 12 0.35
15 13 0.38
16 9 0.26
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (15 bp):
AGAAAGAAAAGAGAA
Found at i:22334679 original size:36 final size:36
Alignment explanation
Indices: 22334637--22334730 Score: 170
Period size: 36 Copynumber: 2.6 Consensus size: 36
22334627 ATGAAACAAT
22334637 TTAATTAAACAATTTTAATCAACTAGGCCCAATAAC
1 TTAATTAAACAATTTTAATCAACTAGGCCCAATAAC
* *
22334673 TTAATTAAACAATTTTAATCAATTAGGCCTAATAAC
1 TTAATTAAACAATTTTAATCAACTAGGCCCAATAAC
22334709 TTAATTAAACAATTTTAATCAA
1 TTAATTAAACAATTTTAATCAA
22334731 GTGCTTGAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (36 bp):
TTAATTAAACAATTTTAATCAACTAGGCCCAATAAC
Found at i:22338359 original size:42 final size:41
Alignment explanation
Indices: 22338300--22338379 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 41
22338290 TAAGTATCAT
22338300 TGATGTCCAATCTCAATGATACATTGACTAGGAACATTNATC
1 TGATGTCCAATCTCAATGATACATTGACTAGGAACATT-ATC
*
22338342 TGATGTCCAATCTCAATGATACATTGACTAGGACCATT
1 TGATGTCCAATCTCAATGATACATTGACTAGGAACATT
22338380 TTGAGATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (41 bp):
TGATGTCCAATCTCAATGATACATTGACTAGGAACATTATC
Found at i:22341857 original size:15 final size:15
Alignment explanation
Indices: 22341832--22341890 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
22341822 GATCAAATGG
22341832 AAGAAAGGAAAAAGGA
1 AAGAAA-GAAAAAGGA
*
22341848 AAGAAAG-AAAGGAGA
1 AAGAAAGAAAAAG-GA
* *
22341863 AAGAAAAAAAAAAGA
1 AAGAAAGAAAAAGGA
*
22341878 AAGGAAGAAAAAG
1 AAGAAAGAAAAAG
22341891 CTTGGTTTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 4 0.12
15 21 0.62
16 9 0.26
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAGAAAGAAAAAGGA
Found at i:22344592 original size:13 final size:14
Alignment explanation
Indices: 22344559--22344594 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
22344549 TTAGTTTAAA
*
22344559 TTTTGGTTAATTAG
1 TTTTAGTTAATTAG
22344573 TTTTAGTTAATTAG
1 TTTTAGTTAATTAG
22344587 -TTTAGTTA
1 TTTTAGTTA
22344595 TTTGAATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.25, C:0.00, G:0.17, T:0.58
Consensus pattern (14 bp):
TTTTAGTTAATTAG
Found at i:22349712 original size:42 final size:42
Alignment explanation
Indices: 22349653--22349777 Score: 196
Period size: 42 Copynumber: 3.0 Consensus size: 42
22349643 TGTTAATGTG
* *
22349653 GACCCGGCTATGTGCGAGTAGAAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* *
22349695 GACCCGACTATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
**
22349737 GACCCGGCTATGTGCGAGTGGGAGTGGGCATAAGCCGTTGC
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
22349778 ATATGAGATG
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.35, T:0.22
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
Found at i:22349825 original size:2 final size:2
Alignment explanation
Indices: 22349818--22349860 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
22349808 ATGATGATTG
22349818 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22349860 A
1 A
22349861 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22351833 original size:60 final size:60
Alignment explanation
Indices: 22351712--22351835 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 60
22351702 GAGATTCAGT
* * * * ** **
22351712 GAAATTGTAACCTAGAAACAGTAGGTTTTTCGCTATAGCGAGAATGAATTTTGCTGTAGC
1 GAAATTGTAACCCAGAAACAGAAAGTTTTTCGCTACAGCGAGAATGAATTTCACTACAGC
*
22351772 GAAATTGTAACCCAGAAACAGAAAGTTTCTT-GCTGCAGCGAGAATGAATTTCACTACAGC
1 GAAATTGTAACCCAGAAACAGAAAGTTT-TTCGCTACAGCGAGAATGAATTTCACTACAGC
22351832 GAAA
1 GAAA
22351836 AGCTACGGTG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 52 0.96
61 2 0.04
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (60 bp):
GAAATTGTAACCCAGAAACAGAAAGTTTTTCGCTACAGCGAGAATGAATTTCACTACAGC
Found at i:22351874 original size:21 final size:22
Alignment explanation
Indices: 22351848--22351889 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
22351838 CTACGGTGTC
22351848 ATTCTCGCTGCAGCGA-AAATG
1 ATTCTCGCTGCAGCGAGAAATG
*
22351869 ATTCTCGCTGTAGCGAGAAAT
1 ATTCTCGCTGCAGCGAGAAAT
22351890 AGGGCACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
ATTCTCGCTGCAGCGAGAAATG
Found at i:22352208 original size:43 final size:43
Alignment explanation
Indices: 22352132--22352250 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 43
22352122 TCATCAGCTC
* * * * * *
22352132 ATGCACACTCCTTACTCGCATATGGCTGGGTCATCACT-GGGTT
1 ATGCGCACTCCTTACTCGCACATAGCCGAGTCATC-CTCGGCTT
* *
22352175 ATGCGTACTCCTTACTCGCACATAACCGAGTCATCCTCGGCTT
1 ATGCGCACTCCTTACTCGCACATAGCCGAGTCATCCTCGGCTT
* * *
22352218 ATGCGCACTCCCTACTCACACATAGCCAAGTCA
1 ATGCGCACTCCTTACTCGCACATAGCCGAGTCA
22352251 ATGTCATTAC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 2 0.03
43 60 0.97
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCGCACTCCTTACTCGCACATAGCCGAGTCATCCTCGGCTT
Found at i:22355013 original size:12 final size:12
Alignment explanation
Indices: 22354981--22355014 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22354971 TGTTCAACCA
22354981 CAATTTCTTTTT
1 CAATTTCTTTTT
**
22354993 CAACATCTTTTT
1 CAATTTCTTTTT
22355005 CAATTTCTTT
1 CAATTTCTTT
22355015 CTTATAAGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (12 bp):
CAATTTCTTTTT
Found at i:22356056 original size:171 final size:170
Alignment explanation
Indices: 22355760--22356460 Score: 836
Period size: 171 Copynumber: 4.1 Consensus size: 170
22355750 ATCATTGGTA
*
22355760 GTTTCCCGAGGTAAACATTCAGTTATAAACTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAA
1 GTTTCCCGAGGTAAACATTCAATTATAAACTGTTTTAACAAAAAATGT-AAAAAATTCAACTTAA
* * *
22355825 AATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGAGTGACT
65 AATCAATAATGAGATTATAAAACTATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATGAGTGACT
* *
22355890 ATAAATGAACTTTTCTTGTCAATCGATGGCTTTCGCTTCAT
130 ATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAC
* * * * * * *
22355931 GTTTCCCGAGGTAAATATTTAATTATAATCTATTTCAATAAAAAATATAAAATAATTCAACTTAA
1 GTTTCCCGAGGTAAACATTCAATTATAAACTGTTTTAACAAAAAATGTAAAA-AATTCAACTTAA
* * * * * * *
22355996 AATCAGTAATGAGATTTTAAAATTATTTAAAGCTAGCAATAAGGTTTTCCAAGACATGAGTGACT
65 AATCAATAATGAGATTATAAAACTATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATGAGTGACT
** * * *
22356061 ATAAATGGACTTTTCTCATGAATCGATGTCTTTTGCTTCAC
130 ATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAC
** * * * ** * *
22356102 GTTTCTTGAGGCAAACATTCAATTAT-AATTTTGTTTAATGAATAATGTAATAAAATTAAACTTA
1 GTTTCCCGAGGTAAACATTCAATTATAAACTGT-TTTAACAAAAAATGTAA-AAAATTCAACTTA
* * * *
22356166 AAATCAATAACGAGACTATAAAACAATTTAAAGCGA-CTAATAAGGCTTTCGAAGGCATGGGTGA
64 AAATCAATAATGAGATTATAAAACTATTTAAAGCGAGC-AATAAGGCTTTCGAAGGCATGAGTGA
* * ** *
22356230 CTATAAATGGACTTTTCCTT-TCAA-CGGAGGGTTTTAACCTCAC
128 CTATAAATGGACTTTT-CTTGTCAATC-GATGGCTTTCGCTTCAC
22356273 GTTTCCCGAGGTAAACATTCAATTATAAACTGTTTTAACAAAAAAT-TCCAAAAAATTCAACTTA
1 GTTTCCCGAGGTAAACATTCAATTATAAACTGTTTTAACAAAAAATGT--AAAAAATTCAACTTA
* * * * *
22356337 AAATCAATAATGAGATTATAAACCTATTTAGAGCGAGTAATGAGGCTGTCGAAGGCATGAGTGAC
64 AAATCAATAATGAGATTATAAAACTATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATGAGTGAC
*
22356402 TATAAATGGACTTTTCTTGTCAATTGATGGCTTTCGCTTCAC
129 TATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAC
*
22356444 GTTTCCCGAGTTAAACA
1 GTTTCCCGAGGTAAACA
22356461 ACCNNNNNNN
Statistics
Matches: 436, Mismatches: 82, Indels: 24
0.80 0.15 0.04
Matches are distributed among these distances:
170 13 0.03
171 413 0.95
172 10 0.02
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (170 bp):
GTTTCCCGAGGTAAACATTCAATTATAAACTGTTTTAACAAAAAATGTAAAAAATTCAACTTAAA
ATCAATAATGAGATTATAAAACTATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATGAGTGACTA
TAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAC
Found at i:22357166 original size:35 final size:32
Alignment explanation
Indices: 22357127--22357198 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
22357117 TTAATTGTTT
*
22357127 AATTTAATTAATTAGCCCCCATGACTTAATTAAAC
1 AATTTAATTAATTAG-CCACA--ACTTAATTAAAC
* *
22357162 AATTTAGTTAATTAGGCACAACTTAATTAAAC
1 AATTTAATTAATTAGCCACAACTTAATTAAAC
22357194 AATTT
1 AATTT
22357199 TAATCAAGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 17 0.50
34 3 0.09
35 14 0.41
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (32 bp):
AATTTAATTAATTAGCCACAACTTAATTAAAC
Found at i:22358990 original size:171 final size:171
Alignment explanation
Indices: 22358400--22361432 Score: 2397
Period size: 170 Copynumber: 17.8 Consensus size: 171
22358390 ATGGAAACAC
* * * * * *
22358400 ATTCAATTTAAAATCATTTCATAAAGTTATAAAACCACTTAAAATGAGTGATAAAGCATTT-GAA
1 ATTCAATTCAAAATCATTT-ATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGC-TTTCGAA
* * * * * * * * * * *
22358464 GCCTTAAGTGACTATAAATAGAATTCTCTTGTCAATGGGTAGCTTTTGCTACACGTTTC-CTAAT
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AAT
* * * ** * *
22358528 TCAAACA-TCTAATTATGATTTGTTATAAAGAAAAAT-AACAAAA
128 GCAAACATTC-AATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* ** * * * * * * * *
22358571 TTTTGATTTAAAATGATTAAT-AAGTGTAAAAAACCATTTAAAGTGAGCAACTAGCCTTGCGAAG
1 ATTCAATTCAAAATCATTTATAAAGT-TATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAG
* * * * * *
22358635 GCATGAGTGACTATAAATGGACTTTGCTTATTAATGGATGGATTTCGCTTCACGTTTCCCAATGC
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGC
* * * ** * *
22358700 CAACATTCGATTATAATCTGTTTTAAATAGAAATGTAAAAAC
130 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
** * ** ** *
22358742 ATTCAATT-----T--TTTATAAAGTTATAAAATAACTTAAAGCAAGTAATTAGGCTTTTGAAGG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * * *
22358800 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCAATGCG
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCA
** * * *
22358865 AATGTTTAATTATGATCTATTTGAACCAGAAATGAAAAAAA
131 AACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * **
22358906 ATTCAGTTCAAAATTATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAATA
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * * * * * * * *
22358971 CATGAGTAATTACAAATGGACTTTTCTTTTCAATAGATGCCTTTCGCTACATGTCTC-CTGATGC
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGC
* * * * * **
22359035 AGATATCCAATTTTGATGTGTTTTAATGA-ATAATGAAAAAAA
130 AAACATTCAATTATGATCTGTTTTAACCAGA-AATGAAAAAAA
* * * * * * * ** * * *
22359077 ATTCAAATCCAAATAATTTATAAGGCTATAAAATCGTTTAAAGCAAGTAACTAGGATTTCGTAGG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * * * *
22359142 CATGAGCGACTATAAATGGACTTTTCTTGTCAATGGATGGCTCTCGCTTCACGTATCTCAATGCG
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCA
* * *
22359207 AACATTCAATTATGAACTGTTTTAA-CAGAAA-CAAAAACA
131 AACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * *
22359246 ATTCATTTCAAAATCATTTATAAAGTTATAAAACTATTTAAAGTGAATAACAAGGCCTTCGAAGG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * * * * ** *
22359311 CATGGGTGATTATAAATGAACTTTTCTTGTCAATGGATGGTTTTTGCTTCCCGTTTC-CTAATGA
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGC
* ** * * *
22359375 AAACATTCAATTATGATTTGTTTTAAGTACAAATGTAAAACA
130 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * * * * *
22359417 ATTCAATT-TACATCATTTATAAATTTATAAAACAACTTAAAGCGAGTAACTAGGCTTTCGAAGG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * * * * * *
22359481 CATGAATGACTATAAGTGCACTTTTCTTGTCTATGGATGACTTTCACTTCATGTTTCTCGATGCA
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCA
* * * * * *
22359546 AA-AGTCCAATTGTCATCCG-TTTAACAAAAAATGAAAAAAAA
131 AACA-TTCAATTATGATCTGTTTTAACCAGAAATG-AAAAAAA
* * * * * *
22359587 ATTCAATTTAAAAT-AGCTTTATAAAGTTATAAAATCACTTAAAATGAGTGACAAGGCATTT-AA
1 ATTCAATTCAAAATCA--TTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGC-TTTCGA
* * ** * * *
22359650 AGGTATGAGTGACTAGAAACAGATTTTTCTTGTCAAT-GAGTGGCTTTCGCTACATGTTTCTCGA
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCATGTTTCTCAA
* * * * * *
22359714 TACAGACATTCAATTATGATTTGTTTTAACCAAAAACGAGAAAAA
127 TGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * * * **
22359759 ATTCATTTCCAAATCATTTTTAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAAA
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * *
22359824 CATGAGTGACTATAAACGGACTTTTCTTGTCAAAT-GATGGCTTTCGCTTCATGTTTCTCGATAC
66 CATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCATGTTTCTCAATGC
22359888 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
130 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * * **
22359930 ATTCAGTTCAAAATCA-TTCTAAAGTTATAAAACTATTTAAAGTGAGTAACAAGGCCTTCGAAAA
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
* * *
22359994 CATGAGTGACTATAGATGGACTTTTCTTGTAAATGGATGGCTTTTGCTTCATGTTTC-CTAATGC
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGC
* * * *
22360058 GAACATTCAATTATGATTTGTTTTAACCAGAAATGTAAAATA
130 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * ** *
22360100 ATTCAATTTAAAATCATTTATAAAGTTATAAAACAACTTAAA-TCGA-TAATTAGGCTTTGGAAG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGT-GAGTAACAAGGCTTTCGAAG
* * * * * * * * *
22360163 GCATGGGTGAGTGTAAGTTGACTTTTCTTGTCGATGGATGACTTTCGCTTCACGTTTCTCAATGA
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGC
* * * * * ** * *
22360228 AAACGTCCAACTATCACCCATTTTAACCAAAAAT-TAAAAAA
130 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * * * * * * * *
22360269 ATTCAATTTAAAATAATTTTATAAAGTTATAGAATCACTGAAAATGGGTGACAAGGCATTCGAAG
1 ATTCAATTCAAAATCA-TTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAG
* * * * * *
22360334 GCATGAGTGACAATAAA-GAAACTTTTCTTGTCAATGGGTGGCTTTCGCTACATGTTCCTAAATG
65 GCATGAGTGACTATAAATG-GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATG
* * * * *
22360398 CAAACATCCAATTAGGATGTGTTTAAACGA-ATAATGAAAAAAA
129 CAAACATTCAATTATGATCTGTTTTAACCAGA-AATGAAAAAAA
* * * * * * ** *
22360441 ATTTTGAA-TCCACATAATTTAT-AAGACTATAAAACTATTTAAAGTGAGTAAGTAGGATTTCGA
1 A--TTCAATTCAAAATCATTTATAAAG-TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGA
* * * * *
22360504 AGGCATGAGCGACTATAAATGGACTTTTCTTCTGAATGGATAGCTTTCGCTTCATGTTTCTCGAT
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAT
* * *
22360569 GCGAACATTCAATTATGATGTGTTTTAACC-GAAAACG-AAAAAA
128 GCAAACATTCAATTATGATCTGTTTTAACCAG-AAATGAAAAAAA
* * * * * * *
22360612 ATTCAGTTCAAAATCATTTTTAAAGTTAT-GAACTCATTTAAAGCGAGTAATAAGGCCTTCAAAG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAAC-CATTTAAAGTGAGTAACAAGGCTTTCGAAG
* * * * * * *
22360676 CCATAAGTTACTATAAATGGA-TATTTCTTGTCAATCGATGCCTTTCGCTTCAAGTTTC-CTGAT
65 GCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AAT
* *
22360739 G-AGAACATTTAATTATGATATGTTTTAACCAGAAATGAAAAAAA
128 GCA-AACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* ** * *
22360783 ATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAACCGAG-AACTA-GTTCTTCGAAG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCT-TTCGAAG
* * * *
22360846 GAATGAGTGACTATAAATGGACTTTT-TTATCAATGGATGGCATTCGCTTCATGTTTCTTAATGC
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGC
* * * *
22360910 AACCATTCAATTATGATCTGTTTAAACTAGAAATG-CAAAAA
130 AAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * ** * **
22360951 ATTCATTTAAAAATCATTTATAAAGTTAGAAAATAACTTAAAGCT-AGTAATTAGGCTTTCGAAG
1 ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAG-TGAGTAACAAGGCTTTCGAAG
* * ** * * * *
22361015 GTATGAGTGACTGTAAATGGACTTTTCTTGTCAATGGATGATTTTTGCTTCACGTTTCTCGATAC
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGC
* * *
22361080 AAACA-TCTAATTACGATCCGTTTTAACCAAAAATG-AAAAAA
130 AAACATTC-AATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * * *
22361121 ATTCAATTTAAAATCATTTTCTAAAGTTATAAAACCACTTAAAATGAGTCACAAGGCATTT-GAA
1 ATTCAATTCAAAATCA-TTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGC-TTTCGAA
* * * * * * * *
22361185 GGCATAAGTGATTAAAAATAGACTTTTCTAGTCAATGGGTGGCTTT-GGTTACATGTTTC-CTGA
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CATGTTTCTC-AA
* * * * * *
22361248 TGCAAACATCCAATTATGATGTCTTTTAACAAAAAATAAAAAAAA
127 TGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
* * * * ** *
22361293 ATTTAAAT-AAAATAATTTAT-AAGACTATAAAACCATTTAAAGAAAGTAACTAGGCTTTCGAAG
1 ATTCAATTCAAAATCATTTATAAAG-TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAG
** * * * ** *
22361356 GTGTGAGCGACTATAAATGGACATTTCTTGTCAATGGTTGGCTTTTACTTCATGTTTCTCGATGC
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGC
* *
22361421 GAACATTGAATT
130 AAACATTCAATT
22361433 TGTTGGCTCC
Statistics
Matches: 2261, Mismatches: 522, Indels: 159
0.77 0.18 0.05
Matches are distributed among these distances:
164 128 0.06
165 4 0.00
166 1 0.00
168 44 0.02
169 284 0.13
170 807 0.36
171 709 0.31
172 255 0.11
173 25 0.01
174 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (171 bp):
ATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGG
CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCA
AACATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAA
Found at i:22360203 original size:683 final size:682
Alignment explanation
Indices: 22358600--22361432 Score: 2723
Period size: 683 Copynumber: 4.2 Consensus size: 682
22358590 ATAAGTGTAA
* * * *
22358600 AAAACCATTTAAAGTGAGCAACTA-GCCTTGCGAAGGCATGAGTGACTATAAATGGACTTTGCTT
1 AAAACTATTTAAAGTGAGTAACAAGGCCTT-CGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * * * * **
22358664 ATTAATGGATGGATTTCGCTTCACGTTTCCCAATGCCAACATTCGATTATAATCTGTTTTAAATA
65 GTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCGAACATTCAATTATGATTTGTTTTAACCA
* * *
22358729 GAAATGTAAAAACATTCAA-TT---T--TTTATAAAGTTATAAAATAACTTAAAGCAAGTAATTA
130 GAAATGTAAAAA-ATTCAATTTAAATCATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTA
* *
22358788 GGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACG
194 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCACTTCACG
* * * ** * ** * * * *
22358853 TTTCCCAATGCGAATGTTTAATTATGATCTATTTGAACCAGAAATGAAAAAAAATTCAGTTCAAA
259 TTTCTCAATGCAAAAGTCCAATTATCATCCGTTTAAACCAAAAATGAAAAAAAATTCAATTTAAA
* * * * ** * *
22358918 ATTA-TTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAATACATGAGTAATT
324 A-TACTTTATAAAGTTATAAAATCACTTAAAATGAGTAACAAGGCATTTGAAGGCATGAGTGACT
* * * * * * * *
22358982 ACAAATGGACTTTTCTTTTCAAT-AGATGCCTTTCGCTACATGTCTC-CTGATGCAGATATCCAA
388 AGAAATAGACTTTTCTTGTCAATGAGATGGCTTTCGCTACATGTTTCTC-GATACAAACATCCAA
* ** * ** *
22359045 TTTTGATGTGTTTTAATGAATAATGAAAAAAAATTCAAATCCAAATAATTTATAAGGCTATAAAA
452 TTATGATGTGTTTTAACCAAAAATGAAAAAAAATTCATTTCCAAATAATTTATAAAGCTATAAAA
* * * * *
22359110 TCGTTTAAAGCAAGTAACTAGGATTTCGTAGGCATGAGCGACTATAAATGGACTTTTCTTGTCAA
517 CCATTTAAAGCGAGTAACAAGGATTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTGTCAA
* * * * * *
22359175 TGGATGGCTCTCGCTTCACGTATCTCAATGCGAACATTCAATTATGAACTGTTTTAA-CAGAAA-
582 TGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATTCAATTATGATCTGTTTTAACCAGAAAT
* * *
22359238 CAAAAACAATTCATTTCAAAATCATTTATAAAGTTAT
647 GAAAAAAAATTCAGTTCAAAATCATTT-TAAAGTTAT
* * * *
22359275 AAAACTATTTAAAGTGAATAACAAGGCCTTCGAAGGCATGGGTGATTATAAATGAACTTTTCTTG
1 AAAACTATTTAAAGTGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * ** ** *
22359340 TCAATGGATGGTTTTTGCTTCCCGTTTCCTAATGAAAACATTCAATTATGATTTGTTTTAAGTAC
66 TCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCGAACATTCAATTATGATTTGTTTTAACCAG
* *
22359405 AAATGTAAAACAATTCAATTTACATCATTTATAAATTTATAAAACAACTTAAAGCGAGTAACTAG
131 AAATGTAAAA-AATTCAATTTAAATCATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTAG
* * * * *
22359470 GCTTTCGAAGGCATGAATGACTATAAGTGCACTTTTCTTGTCTATGGATGACTTTCACTTCATGT
195 GCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCACTTCACGT
* * *
22359535 TTCTCGATGCAAAAGTCCAATTGTCATCCGTTT-AACAAAAAATGAAAAAAAAATTCAATTTAAA
260 TTCTCAATGCAAAAGTCCAATTATCATCCGTTTAAACCAAAAATG-AAAAAAAATTCAATTTAAA
* * *
22359599 ATAGCTTTATAAAGTTATAAAATCACTTAAAATGAGTGACAAGGCATTTAAAGGTATGAGTGACT
324 ATA-CTTTATAAAGTTATAAAATCACTTAAAATGAGTAACAAGGCATTTGAAGGCATGAGTGACT
* * * *
22359664 AGAAACAGATTTTTCTTGTCAATGAG-TGGCTTTCGCTACATGTTTCTCGATACAGACATTCAAT
388 AGAAATAGACTTTTCTTGTCAATGAGATGGCTTTCGCTACATGTTTCTCGATACAAACATCCAAT
* * * * * *
22359728 TATGATTTGTTTTAACCAAAAACGAGAAAAAATTCATTTCCAAATCATTTTTAAAGTTATAAAAC
453 TATGATGTGTTTTAACCAAAAATGAAAAAAAATTCATTTCCAAATAATTTATAAAGCTATAAAAC
** ** * *
22359793 CATTTAAAGCGAGTAACAAGGCCTTCGAAAACATGAGTGACTATAAACGGACTTTTCTTGTCAAA
518 CATTTAAAGCGAGTAACAAGGATTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTGTC-AA
*
22359858 T-GATGGCTTTCGCTTCATGTTTCTCGATACAAACATTCAATTATGATCTGTTTTAACCAGAAAT
582 TGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATTCAATTATGATCTGTTTTAACCAGAAAT
*
22359922 GAAAAAAAATTCAGTTCAAAATCATTCTAAAGTTAT
647 GAAAAAAAATTCAGTTCAAAATCATTTTAAAGTTAT
** *
22359958 AAAACTATTTAAAGTGAGTAACAAGGCCTTCGAAAACATGAGTGACTATAGATGGACTTTTCTTG
1 AAAACTATTTAAAGTGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* *
22360023 TAAATGGATGGCTTTTGCTTCATGTTTCCTAATGCGAACATTCAATTATGATTTGTTTTAACCAG
66 TCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCGAACATTCAATTATGATTTGTTTTAACCAG
* *
22360088 AAATGTAAAATAATTCAATTTAAAATCATTTATAAAGTTATAAAACAACTTAAATCGA-TAATTA
131 AAATGTAAAA-AATTCAATTT-AAATCATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTA
* * * * * * * *
22360152 GGCTTTGGAAGGCATGGGTGAGTGTAAGTTGACTTTTCTTGTCGATGGATGACTTTCGCTTCACG
194 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCACTTCACG
* * * * *
22360217 TTTCTCAATG-AAAACGTCCAACTATCACCCATTTTAACCAAAAAT-TAAAAAAATTCAATTTAA
259 TTTCTCAATGCAAAA-GTCCAATTATCATCCGTTTAAACCAAAAATGAAAAAAAATTCAATTTAA
* * * * * *
22360280 AATAATTTTATAAAGTTATAGAATCACTGAAAATGGGTGACAAGGCATTCGAAGGCATGAGTGAC
323 AAT-ACTTTATAAAGTTATAAAATCACTTAAAATGAGTAACAAGGCATTTGAAGGCATGAGTGAC
* * * * * * ** *
22360345 AATAAAGAAACTTTTCTTGTCAATG-GGTGGCTTTCGCTACATGTTCCTAAATGCAAACATCCAA
387 TAGAAATAGACTTTTCTTGTCAATGAGATGGCTTTCGCTACATGTTTCTCGATACAAACATCCAA
* * * * *
22360409 TTAGGATGTGTTTAAACGAATAATGAAAAAAAATT--TTGAATCCACATAATTTAT-AAGACTAT
452 TTATGATGTGTTTTAACCAAAAATGAAAAAAAATTCATT---TCCAAATAATTTATAAAG-CTAT
* * ** *
22360471 AAAACTATTTAAAGTGAGTAAGTAGGATTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTC
513 AAAACCATTTAAAGCGAGTAACAAGGATTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTG
* * * *
22360536 TGAATGGATAGCTTTCGCTTCATGTTTCTCGATGCGAACATTCAATTATGATGTGTTTTAACC-G
578 TCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATTCAATTATGATCTGTTTTAACCAG
*
22360600 AAAACG-AAAAAAATTCAGTTCAAAATCATTTTTAAAGTTAT
643 -AAATGAAAAAAAATTCAGTTCAAAATCA-TTTTAAAGTTAT
* * * * * * *
22360641 -GAACTCATTTAAAGCGAGTAATAAGGCCTTCAAAGCCATAAGTTACTATAAATGGA-TATTTCT
1 AAAACT-ATTTAAAGTGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT-TTTCT
* * * * * * * *
22360704 TGTCAATCGATGCCTTTCGCTTCAAGTTTCCTGATGAGAACATTTAATTATGATATGTTTTAACC
64 TGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCGAACATTCAATTATGATTTGTTTTAACC
* * * * * *
22360769 AGAAATGAAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAACCGAG-AAC
129 AGAAATG-TAAAAAATTCAATT-TAAATCATTTATAAAGTTATAAAACAACTTAAAGCGAGTAAC
* * * * * *
22360833 TA-GTTCTTCGAAGGAATGAGTGACTATAAATGGACTTTT-TTATCAATGGATGGCATTCGCTTC
192 TAGGCT-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCACTTC
* * * * * * * * *
22360896 ATGTTTCTTAATGCAACCA-TTCAATTATGATCTGTTTAAACTAGAAATG-CAAAAAATTC-ATT
256 ACGTTTCTCAATGCAA-AAGTCCAATTATCATCCGTTTAAACCAAAAATGAAAAAAAATTCAATT
* * * ** *
22360958 TAAAA-ATCATTTATAAAGTTAGAAAATAACTTAAAGCT-AGTAATTAGGC-TTTCGAAGGTATG
320 TAAAATA-C-TTTATAAAGTTATAAAATCACTTAAA-ATGAGTAACAAGGCATTT-GAAGGCATG
* ** * * *
22361020 AGTGACT-GTAAATGGACTTTTCTTGTCAATG-GATGATTTTTGCTTCACGTTTCTCGATACAAA
381 AGTGACTAG-AAATAGACTTTTCTTGTCAATGAGATGGCTTTCGCTACATGTTTCTCGATACAAA
* * ** * * *
22361083 CATCTAATTACGATCCGTTTTAACCAAAAATG-AAAAAAATTCAATTT-AAAATCATTTTCTAAA
445 CATCCAATTATGATGTGTTTTAACCAAAAATGAAAAAAAATTC-ATTTCCAAAT-AATTTATAAA
* * ** * * * * * *
22361146 GTTATAAAACCACTTAAAATGAGTCACAAGGCATTT-GAAGGCATAAGTGATTAAAAATAGACTT
508 GCTATAAAACCATTTAAAGCGAGTAACAAGG-ATTTCGAAGGCATGAGCGACTATAAATGGACTT
* * * * * *
22361210 TTCTAGTCAATGGGTGGCTTT-GGTTACATGTTTC-CTGATGCAAACATCCAATTATGATGTCTT
572 TTCTTGTCAATGGATGGCTTTCGCTT-CATGTTTCTC-GATGCAAACATTCAATTATGATCTGTT
* * * * ** * *
22361273 TTAACAAAAAATAAAAAAAAATTTAAAT-AAAAT-AATTTATAAGACTAT
635 TTAACCAGAAATGAAAAAAAATTCAGTTCAAAATCATTTTA-AAG-TTAT
* ** * * ** * *
22361321 AAAACCATTTAAAGAAAGTAACTAGGCTTTCGAAGGTGTGAGCGACTATAAATGGACATTTCTTG
1 AAAACTATTTAAAGTGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * *
22361386 TCAATGGTTGGCTTTTACTTCATGTTT-CTCGATGCGAACATTGAATT
66 TCAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCGAACATTCAATT
22361433 TGTTGGCTCC
Statistics
Matches: 1773, Mismatches: 328, Indels: 109
0.80 0.15 0.05
Matches are distributed among these distances:
675 119 0.07
676 8 0.00
678 4 0.00
679 15 0.01
680 221 0.12
681 272 0.15
682 502 0.28
683 562 0.32
684 70 0.04
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (682 bp):
AAAACTATTTAAAGTGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCGAACATTCAATTATGATTTGTTTTAACCAG
AAATGTAAAAAATTCAATTTAAATCATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTAGG
CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCACTTCACGTT
TCTCAATGCAAAAGTCCAATTATCATCCGTTTAAACCAAAAATGAAAAAAAATTCAATTTAAAAT
ACTTTATAAAGTTATAAAATCACTTAAAATGAGTAACAAGGCATTTGAAGGCATGAGTGACTAGA
AATAGACTTTTCTTGTCAATGAGATGGCTTTCGCTACATGTTTCTCGATACAAACATCCAATTAT
GATGTGTTTTAACCAAAAATGAAAAAAAATTCATTTCCAAATAATTTATAAAGCTATAAAACCAT
TTAAAGCGAGTAACAAGGATTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTGTCAATGGA
TGGCTTTCGCTTCATGTTTCTCGATGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGAAA
AAAAATTCAGTTCAAAATCATTTTAAAGTTAT
Found at i:22361789 original size:18 final size:19
Alignment explanation
Indices: 22361768--22361806 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
22361758 TAGAAGACAG
22361768 AGATAAC-TTAGTCGACTA
1 AGATAACGTTAGTCGACTA
*
22361786 AGATATCGGTTAGTCGACTA
1 AGATAAC-GTTAGTCGACTA
22361806 A
1 A
22361807 AACCATTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (19 bp):
AGATAACGTTAGTCGACTA
Found at i:22362278 original size:35 final size:33
Alignment explanation
Indices: 22362239--22362359 Score: 111
Period size: 35 Copynumber: 3.6 Consensus size: 33
22362229 GTTGATCCCG
*
22362239 TGAAAAATCATTGTTGTAGGTTATGGTTGAGCCTT
1 TGAAAAACCATT-TTG-AGGTTATGGTTGAGCCTT
* * * *
22362274 TGAAAAACCACTTTG-GGTTTTGATTGAGCCTG
1 TGAAAAACCATTTTGAGGTTATGGTTGAGCCTT
* *
22362306 TGAAAAACCATTATGAAAGGTTGTGGTTGAGCCTT
1 TGAAAAACCATTTTG--AGGTTATGGTTGAGCCTT
* *
22362341 TGAAAACCCACTTTG-GGTT
1 TGAAAAACCATTTTGAGGTT
22362360 TTAATTGATA
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
32 31 0.44
34 3 0.04
35 36 0.51
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (33 bp):
TGAAAAACCATTTTGAGGTTATGGTTGAGCCTT
Found at i:22362303 original size:32 final size:32
Alignment explanation
Indices: 22362265--22362367 Score: 118
Period size: 32 Copynumber: 3.1 Consensus size: 32
22362255 TAGGTTATGG
22362265 TTGAGCCTTTGAAAAACCACTTTGGGTTTTGA
1 TTGAGCCTTTGAAAAACCACTTTGGGTTTTGA
* * *
22362297 TTGAGCCTGTGAAAAACCA-TTATGAAAGGTTGTGG
1 TTGAGCCTTTGAAAAACCACTT-TG---GGTTTTGA
* *
22362332 TTGAGCCTTTGAAAACCCACTTTGGGTTTTAA
1 TTGAGCCTTTGAAAAACCACTTTGGGTTTTGA
22362364 TTGA
1 TTGA
22362368 TATCGAGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
31 2 0.03
32 29 0.50
35 25 0.43
36 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (32 bp):
TTGAGCCTTTGAAAAACCACTTTGGGTTTTGA
Found at i:22362309 original size:67 final size:67
Alignment explanation
Indices: 22362219--22362394 Score: 201
Period size: 67 Copynumber: 2.6 Consensus size: 67
22362209 AAGTTAGTTG
* * * * *
22362219 TTGGGTTTTGGTTGATCCCGTGAAAAATCATTGTTG-TAGGTTATGGTTGAGCCTTTGAAAAACC
1 TTGGGTTTTGATTGAGCCCGTGAAAAACCATT-ATGAAAGGTTATGGTTGAGCCTTTGAAAAACC
22362283 ACT
65 ACT
* * *
22362286 TTGGGTTTTGATTGAGCCTGTGAAAAACCATTATGAAAGGTTGTGGTTGAGCCTTTGAAAACCCA
1 TTGGGTTTTGATTGAGCCCGTGAAAAACCATTATGAAAGGTTATGGTTGAGCCTTTGAAAAACCA
22362351 CT
66 CT
* *** * * *
22362353 TTGGGTTTTAATTGATATCGAGAAAAACTATTGTGAAAGGTT
1 TTGGGTTTTGATTGAGCCCGTGAAAAACCATTATGAAAGGTT
22362395 TCGGCTGAGC
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
66 2 0.02
67 90 0.98
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (67 bp):
TTGGGTTTTGATTGAGCCCGTGAAAAACCATTATGAAAGGTTATGGTTGAGCCTTTGAAAAACCA
CT
Found at i:22366139 original size:43 final size:43
Alignment explanation
Indices: 22366091--22366218 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 43
22366081 AGGTTTTACA
** * *
22366091 CAGCTCATGTGCACTCCCTACTTGCACATGGCCGGGTCATCAT
1 CAGCTCATGTGCACTCCCTACACGCACATAGCTGGGTCATCAT
*
22366134 CAGCTCATGTGCACT-CTTACACCGCACATAGCTGGGTCATCAT
1 CAGCTCATGTGCACTCCCTACA-CGCACATAGCTGGGTCATCAT
*
22366177 TAGCTCATGTGCACTCCC-ACACGCACATAGCTGGGTCATCAT
1 CAGCTCATGTGCACTCCCTACACGCACATAGCTGGGTCATCAT
22366219 TATCACACAA
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 25 0.33
43 50 0.66
44 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.25
Consensus pattern (43 bp):
CAGCTCATGTGCACTCCCTACACGCACATAGCTGGGTCATCAT
Found at i:22368165 original size:171 final size:171
Alignment explanation
Indices: 22367878--22369985 Score: 1852
Period size: 171 Copynumber: 12.5 Consensus size: 171
22367868 GGACCAATAG
* * * *
22367878 AATTATGATCTGTTTTACCTTGAAATGAAAGAAAGTTCAATTTAAAATCATTTATAAAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * * * *
22367943 AACCACTTAAAGCGAGTAAGTAGGCTTTCGAATGCATGAGTGACTATAAATGGACTTTTCTTCTT
66 AACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* *
22368008 AATGGATGGCTTTTGCTTTACATTTCCCAATGCAAACATTC
131 AATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * * *
22368049 AATTATGATCTGTTTTAATTTGAAATGAAAAAAAATTTAGTTCAAAATCATTTCTAAAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * * * * *
22368114 AACCATTTAAAGCGAGTAA-TAAGTTCTTCAAAGGCATGAGTGACCATAAATGGACTTATCATGT
66 AACCATTTAAAGCGAGTAACTAGGCT-TTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * ** * ** *
22368178 CAATGAATGGCATTCACTTCATGTTTCCTAATGTGAACATTT
130 CAATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * * *
22368220 AATTATGATCTGTTTAAACCAAAAATGTAAAAAAATTCATTTTAAAATCATTTATAAAGTTAAAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
** * * * ** * * *
22368285 AATAACTTAAAGCAAGTAACTAGGCTTTTGAAGATATAAGTGACTATAAATGGACTTCTCTTGTC
66 AACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* ** * * *
22368350 AATGAATGATTTTTGCTTCACATTTCTCAATGCAAA-AATC
131 AATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
** * * * * * *
22368390 TAATTGCGATCTGTTTTCACAAAAAATGAAAACAAATTCAGTTTAAAATCATTTTCTAAAGTTAT
1 -AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCA-TTTATAAAGTTAT
** * * * * * *
22368455 AAAACCATTTAAAATGAGTCA-TAAGGCATTCAAAGGCATAAGTGACTATAAAAAGACTTTTCTA
64 AAAACCATTTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * ** * *
22368519 GTCAATGGGT-GATTT-TTTTACACGTTTCCCAATGCAAACATCC
128 GTCAATGGATGGCTTTCGCTT-CACATTTCCCAATGCAAACATTC
* * * * *
22368562 AATTATGATGTGTTTTAAC---AAA--AAAAAAATTTGAA-TTAAAATAATTTAT-AAGACTATA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATA
* * ** *
22368620 AAACCATTTAAAGCAAGTAACTAGGCTTTTGAAGGCATGAGCAACTATAAAT-GAACTTTTGTTG
65 AAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTG
** *
22368684 TC-A---AT-G-----G-TTCATGTTTCCGAATGCAAACA-TC
129 TCAATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * * *
22368715 GAATTATGATCTGTTTTAGCTAGAAATGAAAGAAAGTTCAATTTATAATAATTTATAAATTTATA
1 -AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATA
* * * * **
22368780 AAACCACTTAAAGTGAGTAAGTAGGCTTTCGAACGCATGAGTGACTATAAATAGACTTTTCTTCC
65 AAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * ** **
22368845 CAATCGATGGCTTTCACTTCACGTTTCCTGATGTGAACATTC
130 CAATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * * *
22368887 GATTACGATTTGTTTTAATTAGAAACGTAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * * * * *
22368952 AACCACTTAAAGCTAGTAACTAGGCTTTTGAATGTATGAGTGACTATAAATAGACTTTTCTTATT
66 AACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * ** * *
22369017 AGTGGATGGCTTTCACTTCACGTTTTCTGATACGAACATTC
131 AATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * *
22369058 AATTATGATCTGTTTTAATTAGAAATGTAAAACAATTCAATTTAAAATCATTTATAAAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * * *
22369123 AATCACTTAAATCGAGTAACTAGGCTTTCAAAGGCAAT-AGTGACTATGAATAGACTTTTCTTGT
66 AACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGC-ATGAGTGACTATAAATAGACTTTTCTTGT
* *
22369187 CAATGGATGGCGTTT-GCCTCACATTTCCCAATACAAACATTC
130 CAATGGATGGC-TTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * *
22369229 AATTATGAT-TCGTTTTAACCA-AGAAGGAAAAAAAATTCAGTTCAAAATCATTTATAAAGTTAA
1 AATTATGATCT-GTTTTAACTAGA-AATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
** * * * * * *
22369292 AAAACTGTTTAAAGCGAATAACAAGGTCTTT-GAAGTCATGAG-AAGCTATAAATGGATTTTTCT
64 AAAACCATTTAAAGCGAGTAACTAGG-CTTTCGAAGGCATGAGTGA-CTATAAATAGACTTTTCT
** * *
22369355 TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACATTC
127 TGTCAATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * * * * *
22369400 AATTATAATTTGTTATAACCAAAAATGTAAAAATATTCAATTTAAAATTATTTATAAAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * *
22369465 AACAACTTAAAGCGAGTAACTAGGCTTTCAAAGGCAT-AGGTGACTATAAATAGACTTTTCTAGT
66 AACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA-GTGACTATAAATAGACTTTTCTTGT
* * * * *
22369529 CAATGGGT-TCTTTTG-TT-ACATGTTTCCCGATGCAAACATCC
130 CAATGGATGGCTTTCGCTTCACA--TTTCCCAATGCAAACATTC
* * * * *
22369570 AATTATGATGTGTTTTAA-TAAAAAATGAAAAAAAATTGAA-TTAAAATAATTTAT-AAGACTAT
1 AATTATGATCTGTTTTAACT-AGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAG-TTAT
* * * * * * *
22369632 CAAACGATTTAAAGCAAGTAATTAGGCTTTCGAAGGCATGAGTGA-TGTAAGTAGACTTTTCGTG
64 AAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* *
22369696 TTAATGGATGGCTTTCACTTCACATTTCCCAATGCAAACATTC
129 TCAATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * * * * *
22369739 AATTATGATCTATTTAAACTAGAAA-CAAAAAAAATTCAGTTCAAAATCATTTTTACAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * * *
22369803 AACCATTTCAAGTGACTAA-TAAGGCCTTCGAAGGCATGAGTGACTATAAACAGACTTTTCTTGT
66 AACCATTTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* **
22369867 CAATGGATGGCTTTCGCTTCATATTTCCCAATGTGAACATTC
130 CAATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
* * * *
22369909 AATTATAATCTGTTTTAACTAGAAAT-ACAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAA
1 AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* *
22369973 AACAATTGAAAGC
66 AACCATTTAAAGC
22369986 ANNNNNNNNN
Statistics
Matches: 1553, Mismatches: 326, Indels: 117
0.78 0.16 0.06
Matches are distributed among these distances:
153 1 0.00
154 35 0.02
155 2 0.00
157 3 0.00
159 10 0.01
160 72 0.05
161 4 0.00
163 5 0.00
164 59 0.04
165 10 0.01
166 9 0.01
168 41 0.03
169 145 0.09
170 198 0.13
171 874 0.56
172 85 0.05
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
AATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
AACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
AATGGATGGCTTTCGCTTCACATTTCCCAATGCAAACATTC
Found at i:22368820 original size:160 final size:154
Alignment explanation
Indices: 22368542--22368839 Score: 366
Period size: 160 Copynumber: 1.9 Consensus size: 154
22368532 TTTTTTACAC
* * *
22368542 GTTTCCCAATGCAAACATCCAATTATGATGTGTTTTAACAAAAAAAAAATTTGAATTAAAATAAT
1 GTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAAAAAAGTTCAATTAAAATAAT
* * *
22368607 TTATAAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTGAAGGCATGAGCAACTATAAAT
66 TTATAAGACTATAAAACCACTTAAAGCAAGTAACTAGGCTTTCGAACGCATGAGCAACTATAAAT
22368672 -GAACTTTTGTTGTCAATGGTTCAT
131 AG-ACTTTTGTTGTCAATGGTTCAT
* * * *
22368696 GTTTCCGAATGCAAACATCGAATTATGATCTGTTTTAGCTAGAAATGAAAGAAAGTTCAATTTAT
1 GTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAAC-A-AAA--AAA-AAAGTTCAA-TTAA
* ** * **
22368761 AATAATTTATAA-ATTTATAAAACCACTTAAAGTGAGTAAGTAGGCTTTCGAACGCATGAGTGAC
60 AATAATTTATAAGA-CTATAAAACCACTTAAAGCAAGTAACTAGGCTTTCGAACGCATGAGCAAC
22368825 TATAAATAGACTTTT
124 TATAAATAGACTTTT
22368840 CTTCCCAATC
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
154 35 0.29
155 1 0.01
156 3 0.03
158 3 0.03
159 8 0.07
160 69 0.57
161 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (154 bp):
GTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAAAAAAGTTCAATTAAAATAAT
TTATAAGACTATAAAACCACTTAAAGCAAGTAACTAGGCTTTCGAACGCATGAGCAACTATAAAT
AGACTTTTGTTGTCAATGGTTCAT
Found at i:22370495 original size:170 final size:171
Alignment explanation
Indices: 22370020--22370624 Score: 478
Period size: 170 Copynumber: 3.5 Consensus size: 171
22370010 NNNNNNNNCG
* * * * * ** *
22370020 AACATACAATTATTATTTGTTTTAACCA-AAA-ACATAAAAAATTCAATTTAAAATCATTTATAA
1 AACATTCAATTATGATCTATTTTAACCAGAAATA-AAAAAAAATTCAGCTCAAAATCATTTATAA
* * * ** * * * * *
22370083 AGTTATAAAACAACTTAAAGTGAGTAACTAGGCTTTCAAAGGTATGAGTGACTATAAGT-GAACT
65 AGTCATAAAACCATTTAAAGCAAGTAACTAAGCCTTCAAAGGCATGAGCGACTATAAATAG-ACT
* * * * ***
22370147 TTTCTTGTCAATGGATGACTTTCAC--CATGTGTTTCAAAATGCA
129 TTTCTTGCCAATGGATGGCTTTCACTTCA--CGTTCCCTCATGCA
* * * * * * * *
22370190 AACA-TCAAATTACGATGTGTTTTAA-CAAATAATGAAAAAAAACATT-TGAATCCAAATAATTT
1 AACATTC-AATTATGATCTATTTTAACCAGA-AAT-AAAAAAAA-ATTCAG-CTCAAAATCATTT
* ** * * * * ** * *
22370252 AT-AAGACTATAAAACTGTCTAAAGCGAGTAATTAGGATTTCGAAGGCATGAGCGACTATAAATG
61 ATAAAGTC-ATAAAACCATTTAAAGCAAGTAACTAAGCCTTCAAAGGCATGAGCGACTATAAATA
* **
22370316 GATTTTTCTT-CTCAATGGATGGCTTTTGCTTCACGTTTCCC-CATGCA
125 GACTTTTCTTGC-CAATGGATGGCTTTCACTTCACG-TTCCCTCATGCA
*
22370363 AACATTCAATTATGATCTATTTTAACCA-AAATAAAAAAAAATTCAGCTCAAAATCATTTTTAAA
1 AACATTCAATTATGATCTATTTTAACCAGAAATAAAAAAAAATTCAGCTCAAAATCATTTATAAA
* *
22370427 GTCATAAAACCATTTAAAGCAATTAACTAAGCCTTCAAAGGCATGAGTGACTATAAATAGACTTT
66 GTCATAAAACCATTTAAAGCAAGTAACTAAGCCTTCAAAGGCATGAGCGACTATAAATAGACTTT
* * **
22370492 TCTTGCCAATGGATGGCTTTCACTTCATGTTCCCTGATGTG
131 TCTTGCCAATGGATGGCTTTCACTTCACGTTCCCTCATGCA
* * * * *
22370533 AACATTCAATTATGATCTATTTTATCTAGAAATGAAAACAAATTCAGTTCAAAATCATTTATAAA
1 AACATTCAATTATGATCTATTTTAACCAGAAATAAAAAAAAATTCAGCTCAAAATCATTTATAAA
*
22370598 GTTATAAAACCATTTAAAGCAAGTAAC
66 GTCATAAAACCATTTAAAGCAAGTAAC
22370625 AATATTAAGC
Statistics
Matches: 346, Mismatches: 69, Indels: 39
0.76 0.15 0.09
Matches are distributed among these distances:
169 8 0.02
170 136 0.39
171 73 0.21
172 12 0.03
173 107 0.31
174 8 0.02
175 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (171 bp):
AACATTCAATTATGATCTATTTTAACCAGAAATAAAAAAAAATTCAGCTCAAAATCATTTATAAA
GTCATAAAACCATTTAAAGCAAGTAACTAAGCCTTCAAAGGCATGAGCGACTATAAATAGACTTT
TCTTGCCAATGGATGGCTTTCACTTCACGTTCCCTCATGCA
Found at i:22379037 original size:171 final size:169
Alignment explanation
Indices: 22378273--22379435 Score: 799
Period size: 171 Copynumber: 6.8 Consensus size: 169
22378263 TATTATTCAT
* * * * ** *
22378273 GAGTGACTATAAATGGACTTTTTTTGTTAATGGATGGCGTTCGCTTCATGTTTCTTAAAGCAAAC
1 GAGTGACTATAAAT-GACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCGATGCAAAC
* * * * * *
22378338 ATTCAATTATGATCTGTTTAAAGCAGGAATAT-AAAAAAATACATTTTAAAATCATTTATAAAGT
65 ATCCAATTATGATCTGTTTTAA-CA-AAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGT
* * * * *
22378402 TAGAAAACAACTTAAAGTGAGTAATTAGACTCTCAAAGGTAT
128 TATAAAACAACTTAAAGTGAGTAACTAGGCTTTCAAAGGTAA
* * * * * *
22378444 GAATGA-TAGTAAATGGACTTTTTTTGTCAAAGGATGATTTTTGCTTTATGTTTCTCGATGCAAA
1 GAGTGACTA-TAAAT-GACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCGATGCAAA
* * * * *
22378508 CATCCAATTATGATCCGTTTTATCCAAAAATGAAAAAGCAATTCAGTTTAAAATCATTTTCTAAA
64 CATCCAATTATGATCTGTTTTAACAAAAAATGAAAAA--AATTCAATTTAAAATCA-TTTATAAA
* * * * * *
22378573 GTTATAAAACCACTTATAA-TGATTCACAAGGCATTCAAAGGTGTA
126 GTTATAAAACAACTTA-AAGTGAGTAACTAGGCTTTCAAAGGT-AA
* * * *
22378618 -AGTGACTATAAATAGACTTTTCTAGTCAATGGGTGACTTTGGCTACATGTTTC-CTGATGCAAA
1 GAGTGACTATAAAT-GACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTC-GATGCAAA
* * *
22378681 CATCCAATTATGATGTGTTTTAACAAAAAATGAAAAAAAATTTTGAA-TTAAAATAATTTAT-AA
64 CATCCAATTATGATCTGTTTTAACAAAAAATG-AAAAAAA--TTCAATTTAAAATCATTTATAAA
* * * * ** *
22378744 GACTATAAAACCATTTAAAATGAGTAACTAGGCTTTTGAAGGTAT
126 G-TTATAAAACAACTTAAAGTGAGTAACTAGGCTTTCAAAGGTAA
* * * * * * * ** *
22378789 GAGCGACTATAAATTGACTTTTATTATCAATGGATGGCTTTCACTTCATATTTCTTGATGTGAAT
1 GAGTGACTATAAA-TGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCGATGCAAAC
* * * * * * * *
22378854 AGT-GAATTATGATCTGTTCTAGCTAGAAATGAAAGAAAGTTGAATTTAAAATTATTTATAAAGT
65 A-TCCAATTATGATCTGTTTTAACAAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGT
* * * * *
22378918 TATAAAACAACATAAAGTGAGTAGCTAGGCTTTCGAATGCAA
128 TATAAAACAACTTAAAGTGAGTAACTAGGCTTTCAAAGGTAA
* * * * *
22378960 GAGTGACTATAAATGCACTTTTCTTGTCAATGGATGACTTTTGCTTCATGTTTCTCAAAGCGAGC
1 GAGTGACTATAAATG-ACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCGATGCAAAC
* ** * *
22379025 ATCCAGTTATGATCCATTTTAACAAAAAATGAAAACAATTCAGTTTAAAATCATTTTATAAAGTT
65 ATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAATTCAATTTAAAATCA-TTTATAAAGTT
** * * * *
22379090 ATAAAATTACTTGAAA-TGAGTGACAAGGCATTCAAAGGTAT
129 ATAAAACAACTT-AAAGTGAGTAACTAGGCTTTCAAAGGTAA
* * * * * *
22379131 GAGTGACTAGAAATAGACTTTGCTTGTCAAT-AAGTGGCTTTCGGTACATGTTTC-CTGAATGCA
1 GAGTGACTATAAAT-GACTTTTCTTGTCAATGGA-TGACTTTCGCTTCATGTTTCTC-G-ATGCA
* * ** * * * ** *
22379194 AACATCCAATTATGATGTGTTTGAATGAATAATTAAAAAAATTCAAATCCAAATAATTTAT-AAG
62 AACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAG
* * ** * * * * *
22379258 ACTATTAAATC-GTTTAAAGTGAGTAAGTAGGATTTCAAATGCAT
127 -TTA-TAAAACAACTTAAAGTGAGTAACTAGGCTTTCAAAGGTAA
* * * * ** * *
22379302 CAGCT-ACTATAAATCGACTTTTCCTATCAATAGATGGTTTTGGCTTCATGTTT-TCCGATACAA
1 GAG-TGACTATAAAT-GACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCT-CGATGCAA
* * * *
22379365 ACATTCAATTATGATCTGTTTTAAATAAAAAAGTTAGAAAAATTCAATTTAAAATCATTTATAAA
63 ACATCCAATTATGATCTGTTTT-AACAAAAAA-TGAAAAAAATTCAATTTAAAATCATTTATAAA
22379430 GTTATA
126 GTTATA
22379436 TGTCATGACC
Statistics
Matches: 763, Mismatches: 190, Indels: 78
0.74 0.18 0.08
Matches are distributed among these distances:
169 4 0.01
170 62 0.08
171 351 0.46
172 208 0.27
173 126 0.17
174 12 0.02
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (169 bp):
GAGTGACTATAAATGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCGATGCAAACA
TCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
AAAACAACTTAAAGTGAGTAACTAGGCTTTCAAAGGTAA
Found at i:22385135 original size:22 final size:21
Alignment explanation
Indices: 22385110--22385150 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22385100 ACCTTTTTTT
*
22385110 CACTTGTTTCCTGGAATTTTCA
1 CACTT-TTCCCTGGAATTTTCA
*
22385132 CACTTTTCCCTTGAATTTT
1 CACTTTTCCCTGGAATTTT
22385151 TCCACCTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.24, G:0.10, T:0.49
Consensus pattern (21 bp):
CACTTTTCCCTGGAATTTTCA
Found at i:22385687 original size:19 final size:19
Alignment explanation
Indices: 22385665--22385703 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22385655 TATGGGGTTT
*
22385665 TTAAATTCTCAATTTCATC
1 TTAAAATCTCAATTTCATC
* *
22385684 TTAAAATCTCTATTTGATC
1 TTAAAATCTCAATTTCATC
22385703 T
1 T
22385704 AGTTCGAGGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.18, G:0.03, T:0.49
Consensus pattern (19 bp):
TTAAAATCTCAATTTCATC
Found at i:22402856 original size:22 final size:21
Alignment explanation
Indices: 22402831--22402875 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
22402821 AATTCACCAC
22402831 ATTGATGCTAAATCACTATA-TA
1 ATTGAT-CTAAATC-CTATACTA
*
22402853 ATTGATTTAAATCCTATACTA
1 ATTGATCTAAATCCTATACTA
22402874 AT
1 AT
22402876 GCATGGTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 10 0.48
22 6 0.29
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (21 bp):
ATTGATCTAAATCCTATACTA
Found at i:22403502 original size:20 final size:19
Alignment explanation
Indices: 22403477--22403516 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
22403467 CGCGAATTCC
22403477 CCTTTGAATTTTCTACTTTT
1 CCTTTGAATTTTCT-CTTTT
**
22403497 CCTTTGGTTTTTCTCTTTT
1 CCTTTGAATTTTCTCTTTT
22403516 C
1 C
22403517 TTCCTTACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.07, C:0.23, G:0.07, T:0.62
Consensus pattern (19 bp):
CCTTTGAATTTTCTCTTTT
Found at i:22416602 original size:21 final size:20
Alignment explanation
Indices: 22416578--22416625 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
22416568 ATCTTACCTT
*
22416578 TTTTTCACTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
22416599 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
22416620 TTTTTC
1 TTTTTC
22416626 CACCTAGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:22416625 original size:22 final size:22
Alignment explanation
Indices: 22416583--22416623 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22416573 ACCTTTTTTT
*
22416583 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22416605 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22416624 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22417696 original size:172 final size:169
Alignment explanation
Indices: 22417314--22420553 Score: 695
Period size: 172 Copynumber: 19.1 Consensus size: 169
22417304 GGGCTTGACA
* * * * * ** * *
22417314 ATAAATGGACTTTTATTATCAATGGATGGCTTTTGCTTCATGTTTCCTAATGCGAACATTCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
* * *
22417379 ATGATCTGTTTTAACTAGAAATGAAAAAAAATCTGTTCAAATCATTTATAAAGTTATAAAACCAT
66 ATGATCTGTTTTAACTAGAAATGAAAAAAAATCTGTTAAAATCATTTATAAAGTTATAAAACAAC
* * * * * **
22417444 TTAAAGTGAGTAACAAGGTCTTCGAAGGCATGAGTGGCT
131 TCAAAGTCAGTAACAAGCTCTTCAAAGACATGAGTAACT
*
22417483 ATAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
*
22417548 ATGATCTGTTTTAACTAGAAAT-ATAAAACAATTCAAT-TTAAAATCATTTATAAAGTTATAAAA
66 ATGATCTGTTTTAACTAGAAATGA-AAAA-AAATC--TGTTAAAATCATTTATAAAGTTAT-AAA
*
22417611 ACAACTCAAAGTCAGTAACTACGCT-TTCAAAGACATGAGTAACT
126 ACAACTCAAAGTCAGTAAC-AAGCTCTTCAAAGACATGAGTAACT
* * * * * **
22417655 ATAAGTGGACTTTTCTTGTTAGTATATGACTTTCGCTTCACATTTCCCAATGC-AA-ATGTCCAA
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACAT-T-CAA
* * * * ** * *
22417718 TTATGAACCGTTTTATCCA-AAACTGAAAAAAAATTCAATTCAAAATAATTTTATAAATTTATAA
64 TTATGATCTGTTTTAACTAGAAA-TGAAAAAAAA-TCTGTT-AAAATCA-TTTATAAAGTTATAA
* * * * * * *
22417782 AATC-ACAT-AAAATGAGTGATAAGGCAT-TT-GAAGACATTAGTGACT
125 AA-CAAC-TCAAAGTCAGTAACAA-GC-TCTTCAAAGACATGAGTAACT
* ** * * * * ** * *
22417827 ATAAATAGACTTTTCTTGTTGATGGGTGGCTTTCG-TT-ACTTGTTTCCCAATGCAAACATCCAA
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACAT-TTT-CTGATGCGAACATTCAA
* * ** * *
22417890 TTATGATGTGTTTGAA-T-GAATAATGAAAAAAAAAT-TCGAATCCAAATAATTTAT-AAGACTA
64 TTATGATCTGTTTTAACTAG-A-AATG-AAAAAAAATCT-G--TTAAAATCATTTATAAAG-TTA
*** * * **
22417951 TAAAACCGTTTAAAG-CGAGT---AAG----T--AGGATTTGAGCT-ACT
122 TAAAACAACTCAAAGTC-AGTAACAAGCTCTTCAAAGACATGAG-TAACT
* * * * * * * *
22417990 ATAAATGGACTTTTTTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCGATGCGAACATTCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
* * * * * * * *
22418055 ATGATCAGTTTCAACCAAAAATGAAAAGAAATTTAGTTCAAAATCATTTAAAGCAAG-TA-ACAA
66 ATGATCTGTTTTAACTAGAAATGAAAAAAAATCT-GTT-AAAATCATTTATA--AAGTTATAAAA
*** * * * ** * **
22418118 GTTCTTCGAAGGCA-TGA-GTGACT-AT-AAATGGAC-T---TTTCTT
127 CAAC-TCAAAGTCAGTAACAAG-CTCTTCAAA--GACATGAGTAAC-T
* * ** * * *** * *
22418158 GTCAATGGA-TGGTGTTCGT--AT-CATG--TTTC-CTAATGCGAACATTCAATTAT--GATC-T
1 ATAAATGGACTTTTCTT-GTCAATAGATGACTTTCGCT--T-C--ACATTTTCTGATGCGAACAT
* ** * ***
22418213 GT---TTA--AAC-CATAT-A-T-GTAAA--AAAATTCAT-T-TTAAAAATCATTTATAAAGTTA
60 -TCAATTATGATCTGTTTTAACTAG-AAATGAAAAAAAATCTGTT-AAAATCATTTATAAAGTTA
* * * * * * * ** * *
22418265 GAAAATAACTTAAA-ACGAGTAACTAG-GCTTCTGAAGGTATAAGTGACT
122 TAAAACAACTCAAAGTC-AGTAACAAGCTCTTC-AAAGACATGAGTAACT
* * * * * * *
22418313 GTAAATAGACTTTTCTTATCAATTGATGATTTTTGCTT--CATGTTTCTTGATGCAAACA-TCTA
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACAT-TTTC-TGATGCGAACATTC-A
* * * * * * *
22418375 ATTATGATCCGTTTTAACCA-AAATGAAAAAATATTCAGTTTGAAATAATTTTTCTAAAGTTATA
63 ATTATGATCTGTTTTAACTAGAAATGAAAAAA-AATCTG-TTAAAATCA--TTTATAAAGTTATA
* * * * * * * * *
22418439 AAACCACTTAAAATGAGTCACAAGGCAT-TT-GAAGGCATAAGTGACT
124 AAACAACTCAAAGTCAGTAACAA-GC-TCTTCAAAGACATGAGTAACT
* * * * * * * *
22418485 ATAAATAGAC-TTTCTAGTCAATGGGTGGCTTTTGC-T-ACATGTTTCTCGATGCAAACATCCAA
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACAT-TTTCT-GATGCGAACATTCAA
* * * * * * * * *
22418547 TTATAATGTGTTGTAACAAAAAATGAAAAACAATTTTGAATTAAAATAATTTAT-AAGACTATAA
64 TTATGATCTGTTTTAACTAGAAATGAAAAA-AAATCTG--TTAAAATCATTTATAAAG-TTATAA
* * * * * * * **
22418611 AGCTATTTAAAG-CAAGTAACTAGGCT-TTCGAAGGCATGAGCGACT
125 AACAACTCAAAGTC-AGTAAC-AAGCTCTTCAAAGACATGAGTAACT
* * * * ** * **
22418656 ATAAATGGACTTTTCTTGTTAATGGATGGCTTTCACTT--CATGTTTCCAATGCGAGCATTGGAT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACAT-TTTCTGATGCGAACATTCAAT
* * * ** ** *
22418719 TATGATTTGTTTTAGCAAGAAATGAAAGAAAGTTCAATTCAAAATTATTTATAAAGTTATAAAAC
65 TATGATCTGTTTTAACTAGAAATGAAA-AAAAATCTGTT-AAAATCATTTATAAAGTTATAAAAC
* * * * * *
22418784 TACAT-AGAGTGAGTAACTAAGCT-TTCGAACGA-ATGGGTGACT
128 AAC-TCAAAGTCAGTAAC-AAGCTCTTC-AAAGACATGAGTAACT
* * * * * * * *
22418826 ATGAATGGACTTTTGTTCTTAATGGATGGCTTTCGCTTTACATTTCCTGATGCGAACATTCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
* * *
22418891 ATGATCTCTTTTAATTAGAAATGTAAAAAAAATTCAAT-TTAAAATCAATTATAAAGTTATAAAA
66 ATGATCTGTTTTAACTAGAAATG-AAAAAAAA-TC--TGTTAAAATCATTTATAAAGTTATAAAA
* * *
22418955 TC-ACTTAAAG-CGAGTAACTAGACT-TTCAAATG-CATGAGTGACT
127 -CAACTCAAAGTC-AGTAACAAG-CTCTTCAAA-GACATGAGTAACT
** * * * * *
22418998 ATAAATAAACTTTTTCTTATCAATGGATGGCTTTTGCTTCACA-TTTCTTGATGTGAACATTCAA
1 ATAAATGGAC-TTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTC-TGATGCGAACATTCAA
* * * ** * *
22419062 TGATCATATGTTTTAACTAGATTTGAAAAAAAATTTAGTCCAAAATCATTTATAAAGTTA-AAAA
64 TTATGATCTGTTTTAACTAGAAATGAAAAAAAATCT-GT-TAAAATCATTTATAAAGTTATAAAA
* * * ** ** ** * **
22419126 CCAA-TTAAAGTGAGTAGCAAGGGCTTTGAAGGTATGAGCAGTT
127 -CAACTCAAAGTCAGTAACAAGCTCTTCAAAGACATGAGTAACT
* * * **
22419169 ATAAATGGACTTTTCTTGCCAATGGATGGA-TTTCGCTTCAC-GTTTCACAATGCGAACATTCAA
1 ATAAATGGACTTTTCTTGTCAATAGAT-GACTTTCGCTTCACATTTTC-TGATGCGAACATTCAA
* * **
22419232 TTATGATCTGTTTTAACCAGAAATGTAAAAAAATTCAAT-TTAAAATCATTTATAAAGCCATAAA
64 TTATGATCTGTTTTAACTAGAAATG-AAAAAAAATC--TGTTAAAATCATTTATAAAGTTATAAA
* * * *
22419296 ACAACTTAAAG-CAAGTAACTAGGCT-TTCAAAGGCATGAGTGACT
126 ACAACTCAAAGTC-AGTAAC-AAGCTCTTCAAAGACATGAGTAACT
* * * * * * ** * *
22419340 A-AAATTGACTTTTGTTGTCAATGGATGGCTTTCGCTTCA-AGTTCCCAATG-AAACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
* * * * *
22419402 AGGATCCGTTTTAACCAAAAATGAAAAAAATTCAAT-TTAAAATCATTTTATAAAGTTATAAAAC
66 ATGATCTGTTTTAACTAGAAATGAAAAAAAATC--TGTTAAAATCA-TTTATAAAGTTATAAAAC
* * * * * * * *
22419466 CACAT-AAAATGAGTGAGAAGGCAT-TT-GAAGGCATGAGTGACT
128 AAC-TCAAAGTCAGTAACAA-GC-TCTTCAAAGACATGAGTAACT
* * * *
22419508 ATAAATAGACTTTTCTTGTCAAT-GGTGGA-TTTCGC--CACATGTTTCCTGATGCAAACATCCA
1 ATAAATGGACTTTTCTTGTCAATAGAT-GACTTTCGCTTCACAT-TTT-CTGATGCGAACATTCA
* * * * * * *
22419569 ATTATGATGTGGTTTAACAAAAAAT-AAAATAAAATTTTGATTTAAAATAATTTAT-AAGACTAT
63 ATTATGATCTGTTTTAACTAGAAATGAAAA-AAAA-TCTG--TTAAAATCATTTATAAAG-TTAT
* * * * * * *
22419632 GAAACCATTTAAAG-CAAGTAACTAGGCGT-TT-AAAGGCATGAGTGACT
123 AAAACAACTCAAAGTC-AGTAAC-AAGC-TCTTCAAAGACATGAGTAACT
* * * * * ** **
22419679 ATAAATGGACTTTTCTTTTTAATGGATGGCTTTCACTT--CATGTTTCCAATGC-AAGCATTGGA
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACAT-TTTCTGATGCGAA-CATTCAA
* * ** ** *
22419741 TTATGATTTGTTTTAGCTAGAAATGAAAGAAAGTTCAATTCAAAATTATTTATAAAGTTATAAAA
64 TTATGATCTGTTTTAACTAGAAATGAAA-AAAAATCTGTT-AAAATCATTTATAAAGTTATAAAA
* * * * * *
22419806 CTATA-T-AGAG-CGAGTACCTAGGCT-TTCGAACG-CATGGGTGACT
127 C-A-ACTCAAAGTC-AGTAAC-AAGCTCTTC-AAAGACATGAGTAACT
* * * * * * * * *
22419849 ATGAATGGACTTTTGTTCTCAATGGATGGCTTTCGCTTTATAGTTCCTGATGCGAACATTCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
* * *
22419914 ATGATATGTTTTAATTAGAAATGTAAAAAAAATTCAAT-TTAAAATCAATTATAAAGTTATTAAA
66 ATGATCTGTTTTAACTAGAAATG-AAAAAAAA-TC--TGTTAAAATCATTTATAAAGTTA-TAAA
* * * * * *
22419978 TC-ACTTAAAG-CGAGTAACGAGACT-TCCGAATG-CATGAGTGACT
126 ACAACTCAAAGTC-AGTAACAAG-CTCTTC-AAAGACATGAGTAACT
* * * * * * * *
22420021 ATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACA-TTTCTTGTTACAAACATTCAAT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTC-TGATGCGAACATTCAAT
* * *
22420085 TATAATCTGTTTTAACTAGAACTGAAAAAAAATTCTGTTCAAAATCATTTATGAAGTTATAAAAC
65 TATGATCTGTTTTAACTAGAAATGAAAAAAAA-TCTGTT-AAAATCATTTATAAAGTTATAAAAC
* * * * * ** **
22420150 CATTTAAAGTGC-GTAACAAAGGCT-TT-GAAGGCATGAACAGTT
128 AACTCAAAGT-CAGTAAC-AA-GCTCTTCAAAGACATGAGTAACT
* * * * * ** * *
22420192 CTAAATGGACCTTTCTTGTCAATGGACGGCTTTCGCTTCATGTTTCCTAATGCGAACATTCAATT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
* * * * * *
22420257 ATGACCTATTTTAACCAAAAATGTAAAAAAAATTCAAT-TTAAAATGATTTATAAAGTCATAAAA
66 ATGATCTGTTTTAACTAGAAATG-AAAAAAAA-TC--TGTTAAAATCATTTATAAAGTTATAAAA
* * ** *
22420321 CAACTTAAAG-CAAGTAACTAAGCT-TTCTAAGGTATGAGTGACT
127 CAACTCAAAGTC-AGTAAC-AAGCTCTTCAAAGACATGAGTAACT
* * * * * ** * *
22420364 A-AAATTGACTTTTGTTGTCAATGGATGGCTTTCGCTT--CATGTTCCCAATG-AAACATCCAAT
1 ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACAT-TTTCTGATGCGAACATTCAAT
* * * * * **
22420425 TATGATCCGTTTTAACCAAAAAT-TAAAAAATTCAATTCAAAATCATTTTATAAAGTTATAAAAC
65 TATGATCTGTTTTAACTAGAAATGAAAAAAAATCTGTT-AAAATCA-TTTATAAAGTTATAAAAC
* * * * * * * *
22420489 CACAT-AAAATGAGTGAGAATGCAT-TT-GAAGGCATGAGTGACT
128 AAC-TCAAAGTCAGTAACAA-GC-TCTTCAAAGACATGAGTAACT
*
22420531 ATAAATAGACTTTTCTTGTCAAT
1 ATAAATGGACTTTTCTTGTCAAT
22420554 GGTGGATTTC
Statistics
Matches: 2309, Mismatches: 533, Indels: 459
0.70 0.16 0.14
Matches are distributed among these distances:
150 4 0.00
151 6 0.00
152 22 0.01
153 2 0.00
154 6 0.00
155 16 0.01
156 9 0.00
157 6 0.00
158 6 0.00
159 2 0.00
160 5 0.00
161 6 0.00
162 26 0.01
163 82 0.04
164 13 0.01
165 20 0.01
166 15 0.01
167 88 0.04
168 119 0.05
169 164 0.07
170 352 0.15
171 592 0.26
172 616 0.27
173 126 0.05
174 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (169 bp):
ATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTTCTGATGCGAACATTCAATT
ATGATCTGTTTTAACTAGAAATGAAAAAAAATCTGTTAAAATCATTTATAAAGTTATAAAACAAC
TCAAAGTCAGTAACAAGCTCTTCAAAGACATGAGTAACT
Found at i:22418646 original size:171 final size:170
Alignment explanation
Indices: 22418122--22420697 Score: 1979
Period size: 171 Copynumber: 15.1 Consensus size: 170
22418112 TAACAAGTTC
22418122 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-TGTTCG-TATCATGTT
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTCGCT-TCATGTT
* * * * * * *
22418185 TC-CTAATGCGAACATTCAATTATGATCTGTTTAAACCATATATGTAAAAAAA-TTCATTTTAAA
64 TCTC-GATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAATTTCA-ATT-AA
* * ** *
22418248 AATCATTTATAAAGTTAGAAAATAACTTAAAACGAGTAACTAGGC-
125 AATAATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * * * * * ** *
22418293 TTCTGAAGGTATAAGTGACTGTAAATAGACTTTTCTTATCAATTGATGATTTTTGCTTCATGTTT
1 TTC-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT
* * * * *
22418358 CTTGATGCAAACA-TCTAATTATGATCCGTTTTAAC-CAAAATG-AAAAAATATTCAGTTTGAAA
65 CTCGATGCAAACATTC-AATTATGATCTGTTTTAACTAAAAATGAAAAAAAT-TTCA-ATTAAAA
* ** * *
22418420 TAATTTTTCTAAAGTTATAAAACCACTTAAAATGAGTCACAAGGCAT
127 TAA--TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-T
* * * * * *
22418467 TT-GAAGGCATAAGTGACTATAAATAGAC-TTTCTAGTCAATGGGTGGCTTTTGCTACATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * * * *
22418530 TCGATGCAAACATCCAATTATAATGTGTTGTAACAAAAAATGAAAAACAATTTTGAATTAAAATA
66 TCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAAAA-AA-TTTCAATTAAAATA
* * * * *
22418595 ATTTAT-AAGACTATAAAGCTATTTAAAGCAAGTAACTAGGCT
129 ATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * *
22418637 TTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCACTTCATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * ** * * * * *
22418702 -CAATGCGAGCATTGGATTATGATTTGTTTTAGC-AAGAAATGAAAGAAAGTTCAATTCAAAATT
66 TCGATGCAAACATTCAATTATGATCTGTTTTAACTAA-AAATGAAAAAAATTTCAATT-AAAATA
* * * * *
22418765 ATTTATAAAGTTATAAAACTACATAGAGTGAGTAACTAAGCT
129 ATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * * * * * *
22418807 TTCGAACGAATGGGTGACTATGAATGGACTTTTGTTCTTAATGGATGGCTTTCGCTTTACAT-TT
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGC-TT-CATGTT
* * * * * *
22418871 CCT-GATGCGAACATTCAATTATGATCTCTTTTAATTAGAAATGTAAAAAAAATTCAATTTAAAA
64 TCTCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAATTTCAA-TTAAAA
* *
22418935 TCAA-TTATAAAGTTATAAAATCACTTAAAGCGAGTAACTAGACT
127 T-AATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * ** * * **
22418979 TTCAAATGCATGAGTGACTATAAATAAACTTTTTCTTATCAATGGATGGCTTTTGCTTCACATTT
1 TTCGAAGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT
* ** * * * * ** * *
22419044 CTTGATGTGAACATTCAATGATCATATGTTTTAACTAGATTTGAAAAAAAATTT-AGTCCAAAAT
65 CTCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAATTTCAAT-TAAAAT
* * * * *
22419108 CATTTATAAAGTTA-AAAACCAATTAAAGTGAGTAGCAAGGGCT
128 AATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTA-GGCT
* * * * * *
22419151 TT-GAAGGTATGAG-CAGTTATAAATGGACTTTTCTTGCCAATGGATGGATTTCGCTTCACGTTT
1 TTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT
* * * * *
22419214 CACAATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAA-TTCAATTTAAAAT
65 CTCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAATTTCAA-TTAAAAT
* ** * *
22419278 CATTTATAAAGCCATAAAACAACTTAAAGCAAGTAACTAGGCT
128 AATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * * *
22419321 TTCAAAGGCATGAGTGACTA-AAATTGACTTTTGTTGTCAATGGATGGCTTTCGCTTCAAG-TTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * * * *
22419384 CCAATG-AAACATCCAATTAGGATCCGTTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCA
66 TCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTTCAA-TTAAAAT-A
* * ** * **
22419447 TTTTATAAAGTTATAAAACCACATAAAATGAGTGAGAAGGCAT
129 ATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-T
* * **
22419490 TT-GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG-TGGATTTCGCCACATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * * * * *
22419553 -CTGATGCAAACATCCAATTATGATGTGGTTTAACAAAAAATAAAATAAAATTTTGATTTAAAAT
66 TC-GATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAA-AAAA-TTTCAATTAAAAT
* * * *
22419617 AATTTAT-AAGACTATGAAACCATTTAAAGCAAGTAACTAGGCGT
128 AATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGC-T
* * * *
22419661 TT-AAAGGCATGAGTGACTATAAATGGACTTTTCTTTTTAATGGATGGCTTTCACTTCATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * ** * * * * * *
22419725 -CAATGCAAGCATTGGATTATGATTTGTTTTAGCTAGAAATGAAAGAAAGTTCAATTCAAAATTA
66 TCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTTCAATT-AAAATAA
* * *
22419789 TTTATAAAGTTATAAAACTA-TATAGAGCGAGTACCTAGGCT
130 TTTATAAAGTTATAAAACCACT-TAAAGCGAGTAACTAGGCT
* * * * * * *
22419830 TTCGAACGCATGGGTGACTATGAATGGACTTTTGTTCTCAATGGATGGCTTTCGCTTTATAGTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT-GTTT
* * * * *
22419895 CT-GATGCGAACATTCAATTATGATATGTTTTAATTAGAAATGTAAAAAAAATTCAATTTAAAAT
65 CTCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAATTTCAA-TTAAAAT
* * * *
22419959 CAA-TTATAAAGTTATTAAATCACTTAAAGCGAGTAACGAGACT
128 -AATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * * * * **
22420002 TCCGAATGCATGAGTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACATTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * * * * * ** *
22420067 TTGTTACAAACATTCAATTATAATCTGTTTTAACTAGAACTGAAAAAAAATTCTGTTCAAAATCA
66 TCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTTCAATT-AAAATAA
* * * * *
22420132 TTTATGAAGTTATAAAACCATTTAAAGTGCGTAACAAAGGCT
130 TTTATAAAGTTATAAAACCACTTAAAGCGAGTAAC-TAGGCT
** * * * *
22420174 TT-GAAGGCATGA-ACAGTTCTAAATGGACCTTTCTTGTCAATGGACGGCTTTCGCTTCATGTTT
1 TTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT
* * * * * *
22420237 C-CTAATGCGAACATTCAATTATGACCTATTTTAACCAAAAATGTAAAAAAAATTCAATTTAAAA
65 CTC-GATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAATTTCAA-TTAAAA
* * * * *
22420301 TGATTTATAAAGTCATAAAACAACTTAAAGCAAGTAACTAAGCT
127 TAATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
* * * *
22420345 TTCTAAGGTATGAGTGACTA-AAATTGACTTTTGTTGTCAATGGATGGCTTTCGCTTCATG-TTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * * * *
22420408 CCAATG-AAACATCCAATTATGATCCGTTTTAACCAAAAAT-TAAAAAA-TTCAATTCAAAATCA
66 TCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTTCAATT-AAAAT-A
* * ** * ** *
22420470 TTTTATAAAGTTATAAAACCACATAAAATGAGTGAGAATGCAT
129 ATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-T
* * *
22420513 TT-GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG-TGGATTTCGCTACATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
* * * * * * *
22420576 -CTGATGCAAACA-TCCATATATGATGTGGTTTAACAAAAAATAAAATAAAATTTTGATTTAAAA
66 TC-GATGCAAACATTCAAT-TATGATCTGTTTTAACTAAAAATGAAA-AAAA-TTTCAATTAAAA
* * *
22420639 TAATTTAT-AAGACTATAAAACCATTTAAAGCAAGTAACTAGGCT
127 TAATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCT
**
22420683 TTTAAAGGCATGAGT
1 TTCGAAGGCATGAGT
22420698 NNNNNNNNNN
Statistics
Matches: 1904, Mismatches: 414, Indels: 174
0.76 0.17 0.07
Matches are distributed among these distances:
165 2 0.00
166 10 0.01
167 86 0.05
168 122 0.06
169 114 0.06
170 366 0.19
171 611 0.32
172 490 0.26
173 95 0.05
174 7 0.00
175 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
TCGATGCAAACATTCAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTTCAATTAAAATAAT
TTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT
Found at i:22419205 original size:343 final size:341
Alignment explanation
Indices: 22418125--22420697 Score: 2033
Period size: 343 Copynumber: 7.5 Consensus size: 341
22418115 CAAGTTCTTC
* * **
22418125 GAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAATGGATGG-TGTTCG-TATCATGTTTC
1 GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCT-TTCGCT-TCACATTTC
* * * * *
22418187 CTAATGCGAACATTCAATTATGATCTGTTTAAACCATATATGT-AAAAAAATTCATTTTAAAAAT
64 CTGATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTT-AAAAT
* * * * * * * * * *
22418251 CATTTATAAAGTTAGAAAATAACTTAAAACGAGTAACTAGGC-TTCTGAAGGTATAAGTGACTGT
128 CAATTATAAAGTTATAAAA-CACTTAAAGCAAGTAACTAGACTTTC-AAAGGCATGAGTGACTAT
* * ** * ** **
22418315 AAATAGACTTTTCTTATCAATTGATGATTTTTGCTTCATGTTTCTTGATGCAAACA-TCTAATTA
191 AAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAATG-AAACATTC-AATTA
* * * * ** * *
22418379 TGATCCGTTTTAACCA-AAATGAAAAAATATTCAGTTTGAAATAATTTTTCTAAAGTTATAAAAC
254 TGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCA--TTTATAAAGTTATAAAAC
* *
22418443 CACTTAAAATGAGTCA-CAAGGCATTT
317 CAATTAAAGTGAGT-AGCAAGGC-TTT
* * * * * * * *
22418469 GAAGGCATAAG-TGACTATAAATAGAC-TTTCTAGTCAATGGGTGGCTTTTGC-T-ACATGTTTC
1 GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCGCTTCACAT-TTCC
* * * * * * * * *
22418530 TCGATGCAAACATCCAATTATAATGTGTTGTAACAAAAAATG-AAAAACAATTTTGAA-TTAAAA
65 T-GATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAA-AA-ATTCAATTTAAAA
* * * * * *
22418593 T-AATT-TATAAGACTATAAAGCTATTTAAAGCAAGTAACTAGGCTTTCGAAGGCATGAGCGACT
127 TCAATTATA-AAG-TTATAAAAC-ACTTAAAGCAAGTAACTAGACTTTCAAAGGCATGAGTGACT
* * * ** * * **
22418656 ATAAATGGACTTTTCTTGTTAATGGATGGCTTTCACTTCATGTTTC-CAATGCGAGCATTGGATT
189 ATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAATG-AAACATTCAATT
* * * * * * *
22418720 ATGATTTGTTTTAGCAAGAAATGAAAGAAAGTTCAATTCAAAATTATTTATAAAGTTATAAAACT
253 ATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACC
* *
22418785 ACA-TAGAGTGAGTAACTAA-GCTTT
318 A-ATTAAAGTGAGTAGC-AAGGCTTT
* * ** * * * *
22418809 CGAACGAATG-GGTGACTATGAATGGACTTTTGTT-CTTAATGGATGGCTTTCGCTTTACATTTC
1 -GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGC-CAATGGATGGCTTTCGCTTCACATTTC
* **
22418872 CTGATGCGAACATTCAATTATGATCTCTTTTAATTAGAAATGTAAAAAAAATTCAATTTAAAATC
64 CTGATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTAAAATC
* *
22418937 AATTATAAAGTTATAAAATCACTTAAAGCGAGTAACTAGACTTTCAAATGCATGAGTGACTATAA
129 AATTATAAAGTTATAAAA-CACTTAAAGCAAGTAACTAGACTTTCAAAGGCATGAGTGACTATAA
** * ** * * *
22419002 ATAAACTTTTTCTTATCAATGGATGGCTTTTGCTTCACATTTCTTGATGTGAACATTCAATGATC
193 ATGGAC-TTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAATG-AAACATTCAATTATG
* ** * * *
22419067 ATATGTTTTAACTAGATTTGAAAAAAAATTTAGTCCAAAATCATTTATAAAGTTA-AAAACCAAT
256 ATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCAAT
22419131 TAAAGTGAGTAGCAAGGGCTTT
321 TAAAGTGAGTAGCAA-GGCTTT
* * * *
22419153 GAAGGTATGAGCAG-TTATAAATGGACTTTTCTTGCCAATGGATGGATTTCGCTTCACGTTTCAC
1 GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCGCTTCACATTTC-C
*
22419217 -AATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGT-AAAAAAATTCAATTTAAAATCA
65 TGATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTAAAATCA
* ** *
22419280 TTTATAAAGCCATAAAACAACTTAAAGCAAGTAACTAGGCTTTCAAAGGCATGAGTGACTA-AAA
130 ATTATAAAGTTATAAAAC-ACTTAAAGCAAGTAACTAGACTTTCAAAGGCATGAGTGACTATAAA
* * * * * * *
22419344 TTGACTTTTGTTGTCAATGGATGGCTTTCGCTTCA-AGTTCCCAATGAAACATCCAATTAGGATC
194 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAATGAAACATTCAATTATGATC
* * * *
22419408 CGTTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTTATAAAGTTATAAAACCACA-T
259 TGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCA-TTTATAAAGTTATAAAACCA-ATT
*
22419471 AAAATGAGTGAG-AAGGCATTT
322 AAAGTGAGT-AGCAAGGC-TTT
* * * *
22419492 GAAGGCATGAG-TGACTATAAATAGACTTTTCTTGTCAATGG-TGGATTTCGC--CACATGTTTC
1 GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCGCTTCACA--TTTC
* * * * ** **
22419553 CTGATGCAAACATCCAATTATGATGTGGTTTAA-CA-AAAAATAAAATAAAATTTTGATTTAAAA
64 CTGATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAA-AAAA-TTCAATTTAAAA
* * * *
22419616 T-AATT-TATAAGACTATGAAACCATTTAAAGCAAGTAACTAGGCGTTT-AAAGGCATGAGTGAC
127 TCAATTATA-AAG-TTAT-AAAACACTTAAAGCAAGTAACTAGAC-TTTCAAAGGCATGAGTGAC
* * * ** * **
22419678 TATAAATGGACTTTTCTTTTTAATGGATGGCTTTCACTTCATGTTTC-CAATGCAAGCATTGGAT
188 TATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAATG-AAACATTCAAT
* * * * *
22419742 TATGATTTGTTTTAGCTAGAAATGAAAGAAAGTTCAATTCAAAATTATTTATAAAGTTATAAAA-
252 TATGATCTGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAAC
* * * * *
22419806 CTATATAGAGCGAGTACCTAGGCTTT
317 CAAT-TAAAGTGAGTAGCAAGGCTTT
* ** * * * * *
22419832 CGAACGCATG-GGTGACTATGAATGGACTTTTGTT-CTCAATGGATGGCTTTCGCTTTATAGTTC
1 -GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGC-CAATGGATGGCTTTCGCTTCACATTTC
* **
22419895 CTGATGCGAACATTCAATTATGATATGTTTTAATTAGAAATGTAAAAAAAATTCAATTTAAAATC
64 CTGATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTAAAATC
* * * * * *
22419960 AATTATAAAGTTATTAAATCACTTAAAGCGAGTAACGAGACTTCCGAATGCATGAGTGACTATAA
129 AATTATAAAGTTA-TAAAACACTTAAAGCAAGTAACTAGACTTTCAAAGGCATGAGTGACTATAA
* * *** * *
22420025 ATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACATTTCTTGTTACAAACATTCAATTATAA
193 ATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAAT-GAAACATTCAATTATGA
* ** * *
22420090 TCTGTTTTAACTAGAACTGAAAAAAAATTCTGTTCAAAATCATTTATGAAGTTATAAAACCATTT
257 TCTGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCAATT
* *
22420155 AAAGTGCGTAACAAAGGCTTT
322 AAAGTGAGTAGC-AAGGCTTT
* * * * * * **
22420176 GAAGGCATGAACAG-TTCTAAATGGACCTTTCTTGTCAATGGACGGCTTTCGCTTCATGTTTCCT
1 GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCGCTTCACATTTCCT
* * * * * *
22420240 AATGCGAACATTCAATTATGACCTATTTTAACCAAAAATGTAAAAAAAATTCAATTTAAAATGAT
66 GATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTAAAATCAA
* * *
22420305 TTATAAAGTCATAAAACAACTTAAAGCAAGTAACTA-AGCTTTCTAAGGTATGAGTGACTA-AAA
131 TTATAAAGTTATAAAAC-ACTTAAAGCAAGTAACTAGA-CTTTCAAAGGCATGAGTGACTATAAA
* * * * *
22420368 TTGACTTTTGTTGTCAATGGATGGCTTTCGCTT--CATGTTCCCAATGAAACATCCAATTATGAT
194 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACAT-TTCTCAATGAAACATTCAATTATGAT
* * * *
22420431 CCGTTTTAACCAAAAAT--TAAAAAATTCAATTCAAAATCATTTTATAAAGTTATAAAACCACA-
258 CTGTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCA-TTTATAAAGTTATAAAACCA-AT
* *
22420493 TAAAATGAGTGAG-AATGCATTT
321 TAAAGTGAGT-AGCAAGGC-TTT
* * * * * **
22420515 GAAGGCATGAG-TGACTATAAATAGACTTTTCTTGTCAATGG-TGGATTTCGCTACATGTTTCCT
1 GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCGCTTCACATTTCCT
* * * * ** **
22420578 GATGCAAACA-TCCATATATGATGTGGTTTAA-CA-AAAAATAAAATAAAATTTTGATTTAAAAT
66 GATGCGAACATTCAAT-TATGATCTGTTTTAACCAGAAATGTAAAA-AAAA-TTCAATTTAAAAT
* * * *
22420640 -AATT-TATAAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCATGAGT
128 CAATTATA-AAG-TTATAAAA-CACTTAAAGCAAGTAACTAGACTTTCAAAGGCATGAGT
22420698 NNNNNNNNNN
Statistics
Matches: 1779, Mismatches: 358, Indels: 190
0.76 0.15 0.08
Matches are distributed among these distances:
336 17 0.01
337 42 0.02
338 200 0.11
339 178 0.10
340 118 0.07
341 158 0.09
342 404 0.23
343 533 0.30
344 126 0.07
345 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (341 bp):
GAAGGCATGAGCAGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCGCTTCACATTTCCT
GATGCGAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTAAAATCAA
TTATAAAGTTATAAAACACTTAAAGCAAGTAACTAGACTTTCAAAGGCATGAGTGACTATAAATG
GACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTCAATGAAACATTCAATTATGATCTG
TTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCAATTAAAG
TGAGTAGCAAGGCTTT
Found at i:22424118 original size:171 final size:169
Alignment explanation
Indices: 22423452--22433994 Score: 7134
Period size: 171 Copynumber: 61.9 Consensus size: 169
22423442 TAAAATTTTG
* * * * *
22423452 ATTTAAAATAATTTAT-AAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCATG
1 ATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * *
22423516 AGTGACTATAAATGGACTTTTCTTGTTAATAGATGGCTTTC-ATATCATGTTTTC-AATGCGAGC
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-TCATGTTTCCTAATGCGAAC
** * * *
22423579 ATTGGATTATGATTTGTTTTAGCTAGAAATGAAAGAAAGTTCA
128 ATTCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAATTCA
* * * *
22423622 ATTTAAAATTATTTATAAAGTTATAAAACTACATAAAGCGAGTAACTAGCCTTTCGAAGGCATTG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCA-TG
* * * * *
22423687 -GTGACTATGAATGGACTTTTGTTCTCAATTGATGGCTTTCGCTTTACAT-TTT-CTGATGCGAA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGC-TT-CATGTTTCCTAATGCGAA
* *
22423749 CATTCAATTATGATCTGTTTTAATTAGAAATATAAAAAAAAATTCA
127 CATTCAATTATGATCTGTTTTAACTAG-AA-AT-GAAAAAAATTCA
* * * *
22423795 ATTTAAAATCAATTATAAAGTTATAAAAACCACTTAAAGCGAGTAACTAGACTTTCAAATGCATG
1 ATTTAAAATCATTTATAAAGTTAT-AAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATG
** * * * * ** * *
22423860 AGTGACTATAAATAAACTTTTTTTTATCAATGGATGGTTTTTGCTTCACATTTCTTGATGCGAAC
64 AGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAAC
* *
22423925 ATTCAATTATAATCTGTTTTAACTAGAACTGAAAAGAAATTCA
128 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAA-AAATTCA
* * * * *
22423968 GTTAAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGGCTTTGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTA-GGCTTTGAAGGCATGA
* * * * *
22424033 G-CAGTTATAAATGGA-TCTTTCTTGTTAATGGACGGCTTTCGCTTCACGTTTCCTAATGCGAAC
65 GTGA-CTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAAC
* *
22424096 ATTCAATTATGATCTATTTTAACCAGAAATGTAAAAAAATTCA
128 ATTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * * * * * *
22424139 ATTTAAAATGATTTATAAAGTCATAAAACAATTTAAAGCAAGTAACTAGGCTTTCAAAGGCATGG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* * * *
22424204 GTGACTA-AAATTGACTTTTATTGTCAATGGATGGCTTTCGCTTCATG-TTCCCAATG-AAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* ** * * *
22424266 CCAATTATGATCCATTTTAACCAAAAATGAAAAATATTCA
130 TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* ** * **
22424306 ATTTAAAATCATTTTATAAAGTTATAAAACCACATAAAATGAGTGAGAAGGCATTTGAAGGCATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * * *
22424371 AGTGACTATAAATAGACTGTTCTTGTCAATGG-TGGATTTCGCTACATGTTTCCTGATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * * * * * **
22424435 TCCAATTTTGATGTGGTTTAACAAAAAATAAAATAAAATTTTG
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAA-TTCA
* * * * *
22424478 ATTTAAAATAATTTAT-AAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCATG
1 ATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * * * * * *
22424542 AGTAACTATAAATGAACTTTTCTTGTTAATGAATAGCTTTCACTTCATGTTTCC-CATACGAGCA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
** * * **
22424606 TTGGATTATGATATGTTTTAGCTAGAAAAAAAAAGAAAGTTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAA-AAA-TTCA
* * * * *
22424649 ATTTAAAATTATTTATAAAGTTATAAAACCACATAAAGCGAGTAACTAGGCTTTCGAACGTATGG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* * * * * ** * *
22424714 GTGACTATGAATGTACTTTTGTTCTCAATGGATGGCTTTCACTTCACATTTCCTCATGTGAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* **
22424779 TCAATTATGATCTGTTTTAATTAGAAAAACAAAAAAAATTCA
130 TCAATTATGATCTGTTTTAACTAG--AAATGAAAAAAATTCA
* * *
22424821 ATTTAAAATCAATTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGACTTTTGAATGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATGA
* * * * * * * *
22424886 GTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCTTGATGTGAACAC
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* * *
22424951 TCAATTATGATTTGTTTTAGCTAGAAATGAAAAGAAATTGA
130 TCAATTATGATCTGTTTTAACTAGAAATGAAAA-AAATTCA
* * ** * *
22424992 GTTCAAAATCATTTATAAAGTTATAAAACCGTTTAAAGTGAGTAACAAAGGCTTTGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAAC-TAGGCTTTGAAGGCATGA
* * * * *
22425057 GCGACTATAAATAGACCTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCGAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
*
22425122 TCAATTATCATCTGTTTTAAGCT-GAAATGTAAAAACAATT-A
130 TCAATTATGATCTGTTTTAA-CTAGAAATG-AAAAA-AATTCA
* ** * * * *
22425163 ATATAAAATCATTTATAAAGTTATAAAACTGCTTGAAGCGAATAACTAGGTTTTCGAAGGAATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
** * * * *
22425228 GCAACTATAAATTGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTCCCAATG-AAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* *
22425291 CCAATTATGATCTATTTTAACTA-AAATTGAAATAAAACTTCA
130 TCAATTATGATCTGTTTTAACTAGAAA-TGAAA-AAAA-TTCA
* * * ** * ** *
22425333 ATTCAAAATCATTTTATAAAGTTATAAAAACACATAAAATGAGTGAGAAGGCATTTGAAGCCATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * * * * *
22425398 AGTTACTATAAATAGACTTTT-TTGGTCAATGGGTAGATTTTGCTTCATGTTTCCTGATGCAAAC
64 AGTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAAC
* * * * **
22425462 ATCCAATTATGATGTGGTTTAAC-AGAAAATAAAATAAAATTTTG
128 ATTCAATTATGATCTGTTTTAACTAG-AAATGAAA-AAAA-TTCA
* * ** * *
22425506 ATTTAAAATAATTTAT-AAGACTATAAAAAAACTTAAAGCGAGTAACAAGGCCTTCGAAGGCATG
1 ATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATG
* * * ** * *
22425570 AGCGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTC-CTTCATGTTTCCTGGTGCAAATA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
*
22425634 TTCAATTATGATATGTTTTAACTAGAAATGAAAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATG--AAAAAAATTCA
* * * * *
22425677 ATTCAAAATAATTTATAAAGTTATAAAACCATTTAAAGCGAGTAGA-AAGGCCTTTAAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA-ACTAGG-CTTTGAAGGCATG
* * * * *** *
22425741 AGCGACTATAAATGGACCTTTCTTGTCAATAGATGGCTTTCACTTCACAATTCCCAATGCGAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* *
22425806 TTTAATTATGATCTGTTTTAACCAGAAATGTAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * * * * * *
22425848 ATTTAAAATCGTTTTTAAAGTTA-AAAACAACTTAAAGTGAGCAACTAGACTTTCGAAGGCATAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* ** * * * *
22425912 GCGACTATAAATTAATTTTTCTTGTTAATGGATGGCTTTCACTTCATGTTTTCC-AATG-AAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATG-TTTCCTAATGCGAACA
* * *
22425975 TCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * * ** * *
22426017 ATTCAAAATCATTTTATAAATTTATAAAACCACATAAAATGAGTGACAAGGCATTTGAAGGCATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
*** * * * *
22426082 AGTGACTATAAAAATACTTTTCTTGTCAATGGGTGGCTTTCGCTACATGTTTCCTGATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * ** * * *
22426147 TCCAATTAGGATTTACTTTGACCAGAAATGAAAAAAATTTA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * *
22426188 GTTGAAAGTCATTTATAAAGTTATAAAACGATTTAAAGC-----A--A-G---T--A--CATGAG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTGAAGGCATGAG
* * * ** * * *
22426238 CGACTATAAATGGACTTTTCTTATCTATGGATAACTTTCGCTTCATATATACC-AATGCAAACAT
66 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGT-TTCCTAATGCGAACAT
*
22426302 TCAATTATGATCTATTTTAACTAGAAATGTAAAAAAAATTCA
130 TCAATTATGATCTGTTTTAACTAGAAATG--AAAAAAATTCA
* ** * * ** * * ** *
22426344 ATATAACTTGATTTATAAAGTTATAAAACTACTTAAAATGAGTGACAAGGCATTCAAAGGCATAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATGA
* * * * * * *** * **
22426409 GTGACTGTAAATAGACTTTTCTTGTGAATAGATAGCTTTTGCTTCACACTTCCGAA-GCGAGTAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* * *
22426473 TCAATTACGATATGTTTTAACTAGAAAT-AAAGAAAA-TAA
130 TCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAATTCA
* * * * * * *
22426512 ATTTAAAATCATTTATAAAGTTGTAAAACTATTTAAAGTGTGTAATTAGGCCTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * * *
22426577 GTGGCTATAAATAGACTTTTCTTGCCAATGGATAGCTTTTGCTTCACGTTT-CTCAATGCGAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAACA
* *
22426641 TTCAATTATGATCTATTTTAACCAGAAATGAAAAAAATT-A
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * *
22426681 GTTCAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGTGTAA-TAAGGCCTTTGAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGG-CTTTGAAGGCATG
* * * * ** *
22426745 AGTGGCTATAAATAGACTTTTCTTATCAATGGATGGTTTTCGCTTCACATTTCCTAATGTGAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * *
22426810 TTCAATTATGATCAGTCTTAACCAGAAATGTAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * * * *
22426852 ATTTAAAATCATTTATAAAGTTAGAAAACTACTTAAAGCGAGAAACTAGGTTTTCGTAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* ** * ** * *
22426917 GTGACTATAAATGGACTTTTCTTATCAATCAATGGTTTTTTCTTCACGTTTCCT-ATGCAAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* * * *
22426981 CCAGTTATGATCCGTTTTAAATAGAAATGAAAAAAATTCA
130 TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
** **** * * *
22427021 ATTTAAAATCATTTTATAAAGTTATAAAATGACTTAAAATTTGTGACAAGGCATTTGAAGGTATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * *
22427086 AGTGACTA-CAATAGACTTTTCTTGTCAATGGGTGGCTTTCG-TTACATGTTTCCTGATGCAAAC
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CATGTTTCCTAATGCGAAC
* * * * *
22427149 ATCCAA-TATGATGTGTTATAAC-AAAAACTGAAAAAAATATTTTGA
128 ATTCAATTATGATCTGTTTTAACTAGAAA-TG-AAAAAA-A--TTCA
* ** * * *
22427194 A-TTAAAATAATTTATAAAACTATAAAACCATTTAAAGTGAGTAACTAAGCTTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* * * * ** * * *
22427258 G-CAGCTATAAATTGACTTTTCTTGTCAATGGATGGCGTTCACTTCACATTTCCTGATGTGAACT
65 GTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * *
22427322 TTGAATTATTATCTGTTTTATCTAGAAATGAAAGAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAATTCA
* * * * * *
22427364 A-TT----T-ATTTATAAAGTTATAAAACCA-TTGAGAGCTAATAACAAGGTCTTCGAAGACATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTT-AAAGCGAGTAACTAGG-CTTTGAAGGCATG
* * ** * * *
22427422 AGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCACTTCACATTTTCGAATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* *
22427487 TTCAATTATGATATGTTTTAACCAGAAATGTAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * ** * * *
22427529 ATTTCAAATCATTTTATAAAGTTATAAAACCTCTTAAAATGAGTGACAAGGC-ATGAAGGCATGA
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTGAAGGCATGA
* * * * * * * *
22427593 ATGACTATTAATGGACTTTTCTTGTCAATGGATGGTTTTTGTTTTATGTTTCCTGATGCAAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* *
22427658 CCAATTATGATCTGTTTTAATTAGAAATGAAAAAACATTCA
130 TCAATTATGATCTGTTTTAACTAGAAATGAAAAAA-ATTCA
* * *
22427699 ATTTAAAATCATTTTATAAAGTTATGAAAA-CACTT-AAGATGAGTGACAAGGCATTTGAAGGCA
1 ATTTAAAATCA-TTTATAAAGTTAT-AAAACCACTTAAAG-CGAGTAACTAGGC-TTTGAAGGCA
* * * * * * * *
22427762 TGAGTGACTATAAATAGAGTTTTCTTGTAAATAGG-TGGCTTTCACTACATGTTTACTGATGTGA
62 TGAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCATGTTTCCTAATGCGA
* * * *
22427826 ACA-TCTAATTATGATATGTTTTAACCA-AATATGTAAAACATGTCA
126 ACATTC-AATTATGATCTGTTTTAACTAGAA-ATGAAAAAAAT-TCA
* * * *
22427871 ATTTAAAATCATTTATAAAAG-TA-AAAACTCATTTAAAGCAAGTAACTAGCCTTTCAAAGGCAT
1 ATTTAAAATCATTTAT-AAAGTTATAAAAC-CACTTAAAGCGAGTAACTAGGCTTT-GAAGGCAT
* ** ** * * *
22427934 AAGCAACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCACGTTTCCTGATGTGAAC
63 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAAC
* * *
22427999 ATTGAATTACT-ATCTATTTTAGCTAGAAATGAAAGAAAATTCA
128 ATTCAATTA-TGATCTGTTTTAACTAGAAATGAAA-AAAATTCA
* * *
22428042 ATTTAAAATCATTTATAAAGTTATAAAACTACTTAAAGTGAGTAACTATGCTTTTGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATGA
* * * * * * *
22428107 GTGACTATAAATAGAATTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTTAATGCAAACAC
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* * * * * *
22428172 CCAATTTATGTTCCGTTTCAACCAAAAATGAAAAGAAATTCA
130 TCAA-TTATGATCTGTTTTAACTAGAAATGAAAA-AAATTCA
** * * *
22428214 ATTTAAAATCATTTTATAAAGTTATAAAACCACTTAAAATGAGTGACAAGGTATTTGAAGGCATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATG
** * * * *
22428279 AGTGACTATAAAAAGACTTTTCTTGTCAATGGGTGGCTTTCACTACATGTTTACTAATGCGAAC-
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * * **
22428343 CTCTAATTATGATATGTTTTAACCAAAAAATGAAAAAAATGTTG
129 TTC-AATTATGATCTGTTTTAA-CTAGAAATGAAAAAAAT-TCA
* * * * * *
22428387 ATTTAAAATCATTTATAATAG-TA-AAAACCATTTGAAGTGAGTACCTAGCCTTTCGAAAGCATG
1 ATTTAAAATCATTTATAA-AGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATG
* ** * **
22428450 AGTGACTATAAATGGA-TTTTGCTTGTCAATAGATGGCTTTCGCTTCACATTGCCCGATGCGAAC
64 AGTGACTATAAATGGACTTTT-CTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAAC
* *
22428514 ATTCGATTA-GA--TGCTTTTAACCAGAAATGTAAAAAAATTCA
128 ATTCAATTATGATCTG-TTTTAACTAGAAATG-AAAAAAATTCA
* * * *
22428555 ATTTAAAATCATTTATAAAGTTATAAAACAAGC-TGAAGCGAGTAATTAGGCTTTTGAAGGCGTG
1 ATTTAAAATCATTTATAAAGTTATAAAACCA-CTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * ** ** *
22428619 AGTGACTATAAATGGAATTTTCTTATCAACGGATGGCTTTCGCTTCACATTTCCCCATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * * * *
22428684 TCCAATTAT-ATTTCGTTTCAACCAAAAATGAAAAAATAATCA
129 TTCAATTATGATCT-GTTTTAACTAGAAATGAAAAAA-ATTCA
* ** * * **
22428726 ATTTAAAATCATTTTATGAAGTTATAAAACCACTTAAAATGAGTGACAAGGCATTCAAAGGCATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * * * *
22428791 AGTGACTATAAATTGACTTCTCTTGTCAATGGGTGGCTTTCGCTACACGTTTTCTAATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * * * **
22428856 -TCTAATTATGTTTTCTTTTAACCAAAAATGAAAAAAAATGTTG
129 TTC-AATTATGATCTGTTTTAACTAGAAATG-AAAAAAAT-TCA
* * * * * *
22428899 GTTTAAAATCATTTATATGAG-TA-AAAATCCATTTAAAGTGAGTAACTAGCCTTTTGAAGGTAT
1 ATTTAAAATCATTTATA-AAGTTATAAAA-CCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCAT
* * * * * *
22428962 GAATGACTATAAATAGACTTTGCTTG-CTAATGGATAGCTTTTGCTTCATGTTTCCCAATGCGAA
63 GAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAA
** **
22429026 CATTTGATTATGATCTGTTTTAA-TCA-AAATTGTGAAAAA---A
127 CATTCAATTATGATCTGTTTTAACT-AGAAA-TGAAAAAAATTCA
** * **
22429066 ATTT--AATTTTTTATAAAGTTATAAAA-TAGCTTAAAGTAAGTAACTAGGCTTTTGAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCA-CTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * *
22429128 AGTGACTATAAATAGACTTTTCTTGTCAAT-GATGGCTTTTGCTTCACGTTT-CTCAATGCAAAC
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAAC
* *
22429191 TTTCAATTATGATTTGTTTTAACTAGAAATGAAAAAAAATT--
128 ATTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * *
22429232 ATGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCAT
1 AT-TT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCAT
* * *
22429297 GAGTGACTATAAATGGACTTTTCTTGTCAAT-GATGGCTTTTGCTTCACGTTT-CTCAATGCAAA
63 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAA
* *
22429360 CTTTCAATTATGATTTGTTTTAACTAGAAATGAAAAAAAATT--
127 CATTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * *
22429402 ATGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCAT
1 AT-TT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCAT
* * * *
22429467 GAGTGACTATAAATGGACTTTTCTTATCAATGGATGGTTTTCACTTCACT-TTCCCTAATGCGAA
63 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCCTAATGCGAA
* * * * *
22429531 CATTCAATGATAATATGTTTTAACTAAAAATAAAAAAAATTCA
127 CATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * * * * *
22429574 ATTCAAAATCAATTATAAAGTTATAAAACCATTTAAAGAGAGTAACAAGGTTTTCGAAGACATAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* ** * * * ***
22429639 GTGACTATAAATGGACTTTTTCTTATCAATGGATTCCTTTTGCTTCACGTTTCCCGAA-AAAAAC
65 GTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CCTAATGCGAAC
* * * * *
22429703 ATTTAATTATGATCTATTTGAACCAGAAACGAAAACAAAATTCA
128 ATTCAATTATGATCTGTTTTAACTAGAAATG-AAA-AAAATTCA
* * * * * **
22429747 GTTTAAAATCATTTGTAAAGTTATAAAACCATTTAAAGCAAGT-AGT-GGCAAT-AA---ATGAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTGAAGGCATG-A
* ** * * ** ** ** ** * * * *** **
22429806 CTTTTCTTCTCAATGGA--TGGCTT-TCGCTTCATGTTTTTTGATGCGACCATT-C-AATTAAGA
65 -GTGAC-TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC-ATGTTTCCTAA-TGCGA
* * * ** ** ** * * * ** *
22429866 TATATTTTAACTA-GAAATG--AAAAAAATAATTCAAAATCATTTATAA
126 -ACA-TTCAATTATGATCTGTTTTAACTAGAAATGAAAA--AAAT-TCA
* ** ** *
22429912 ACTTATAAAA-CTATTTAAAGCAAG-TA-ACAAGGC-CTTCGAAAGGGCTAAGTGAGTATAAAAT
1 A-TT-TAAAATC-ATTTATA--AAGTTATA-AAACCACTT--AAA--GC-----GAGTA-ACTAG
* * ** * * * * ** * * ** * ** *
22429973 TCAGTTTAAAATCATTTA-TGATCCATTCACTTCACGTTTCCTGATGCAAAAG-T-TCAAT-GAT
50 GC--TTTGAAGGCA-TGAGTGA-CTA-TAAATGGACTTTTCTTG-T-CAATGGATGGCTTTCGCT
** ** * *
22430034 GATC-TGTTT--TAAT-CAGAA-ATGTCAA--AAAATTCAATTTAAAATCATTTACAAAGTTGAA
108 --TCATGTTTCCTAATGC-GAACAT-TCAATTATGA-TCTGTTT-TAA-C---TAGAAA--TGAA
* *
22430092 AACAACTTAA
161 AA-AAATTCA
** ** * ** * *** * *** *
22430102 AGCTACTATCTAGGCTTT-TGAAGGCAT-GAGTGACTATAAA-TG-G--ACTTTTCTTGTCAATG
1 ATTTAAAATC-A---TTTATAAAGTTATAAAACCACT-TAAAGCGAGTAACTAGGCTT-TGAA-G
* * * * ** * * * *
22430161 G-ATGACTTTCACT-T-CAT-G--TTTCTCCATG-CAA-ACAT-CCAATTGT-GATCCGT-TTTA
59 GCATGA--GTGACTATAAATGGACTTT-T-CTTGTCAATGGATGGC--TT-TCGCTTCATGTTT-
* * * ** * * * *
22430215 ACCAAAATG-GAAAAAAATTTAATTTAAAATC-ATTTT--CTA-AAGT-TATAAAATT--
116 -CC-TAATGCG---AACATTCAA-TTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * * ** ** * * * *
22430267 ACTTAAAATGAGTGATAAGGCATT-CGAAGGCA--TAAA-TGATTATAAATA-GCATTCGAAGGC
1 ATTTAAAATCATTTATAAAG--TTATAAAACCACTTAAAGCGA--GTAACTAGGC-TTTGAAGGC
* * * * * * * * *
22430327 ATAAGTGATTATAAATAGACTTTTCTTTTCAATGTG-TAGCTTTTGCTACAAGTTT-CTCGATGC
61 ATGAGTGACTATAAATGGACTTTTCTTGTCAATG-GATGGCTTTCGCTTCATGTTTCCT-AATGC
* ** * * * **
22430390 AAACACCCAATCATGATGTGTTTTAA-TGAAAAATGAAAAAAAAATTTG
124 GAACATTCAATTATGATCTGTTTTAACT-AGAAATG--AAAAAAATTCA
* * ** **
22430438 ATTTAAAATAATTTAT-AAGTCTATAAAACCATTTAAAGTAAGTAACTAGGCTTTCGATTGCATG
1 ATTTAAAATCATTTATAAAGT-TATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATG
*** * * * * * *
22430502 AACAACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTTATGTTTACTGATGCGCACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * *
22430567 TTGAATTATGATCTGTTTGACCTAGAAATGAGAGAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGA-AAAAAATTCA
* * * * * * *
22430609 ATTTAAAATCATTTATAAAGTTATAAAATCACTTAAAGTGAGTGACAAGGCCCTCGAAAGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * *
22430674 GTGACTATAAATGGACTTTTCTTG-CAAATGGATGGCTTTTGCTTCACGTTT-CTCGATGCAAAC
65 GTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAAC
* * * * *
22430737 ATCCAATCATGATCTGTTTTGA-TAAAAAATGAAGACAAATTCA
128 ATTCAATTATGATCTGTTTTAACT-AGAAATGAA-AAAAATTCA
* * * * * * *
22430780 ATTTAAAATTATTTATAAAGTTATAAAATCACTCTAAA-TGAGTGA-TAACGCATTCGAAGACAT
1 ATTTAAAATCATTTATAAAGTTATAAAACCACT-TAAAGCGAGTAACT-AGGC-TTTGAAGGCAT
* * * * * *
22430843 GAGTAACTATAACTGGAATTTTTTTATGC-ATGGATGGCTATT-GCTTCATGTTTCCTTATGC-A
63 GAGTGACTATAAATGGACTTTTCTTGT-CAATGGATGGCT-TTCGCTTCATGTTTCCTAATGCGA
* * *
22430905 AAATTCAATTATGATCTGTTTTAACCAGGAACAT-AAAACAATTCA
126 ACATTCAATTATGATCTGTTTTAACTA-GAA-ATGAAAAAAATTCA
* * * * * * *
22430950 GTTCAAAATCATTTATAGAGTTATAAAACCATTTAAAGCAAGTAACAAGGCCTTTGAAGCCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * * * *
22431015 GTGACAATAAATAGACCTTTCTTGTCGATGGATAGCTTCCGCTTCATGTTTTCC-CATGCGAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATG-TTTCCTAATGCGAACA
* * *
22431079 TTCAATTATGATATGTTTTAACCACAAATGAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * *
22431120 ATTCAAAATCATTTATAAAGTTATAAAGCAACTTAAAGCAAGTAACTAGGCTTTCAAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* * * * *
22431185 ATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTTGATGTGAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* * *
22431250 TGAATTATGATCTGTTTTAGCTAGAAATGAAAGAAAATTCT
130 TCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAATTCA
* * * * *
22431291 ATTTAAAATCATTTGTAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCCATCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * * *
22431356 GTGACTATACATAGACTTTTCTTATCAATGGATGGCTTTCGTTTCACGTTT-CTCAATGTGAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAACA
**
22431420 TTTGATTATGATCTGTTTTAA-T-GCAAAATGTAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAG--AAATG-AAAAAAATTCA
* * * * * * * *
22431462 ATTTAAAATCCTTTATGAACTT-TGGAAACAACTTAAAGCTAATAACTAGGCTTTTGAATGCATG
1 ATTTAAAATCATTTATAAAGTTAT-AAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * *
22431526 AGTGACTATAAATGGACTTTTCTTGTCTATGGATGGCTTTCACTTCACGTTTCCTGATGCTAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* ** *
22431591 TTGAATTATGATCCATTTTAGCTATG-AATGAAAGAAAATTCA
129 TTCAATTATGATCTGTTTTAACTA-GAAATGAAA-AAAATTCA
* * * *
22431633 ATTTAAAATCATTTATAAAGTTGTAAAACCACTTAAAGTGAGTAACAAGGTCTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * * * ** *
22431698 GTGACTATAAATAGACTTTTCTAGTCAATGGGTGGC-TTCTACTACACGTTTATTGATGCGAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCATGTTTCCTAATGCGAACA
* * * * * *
22431762 TTCAACTATGATATGCTTTAACCAAAAATGAAAAAATTTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * * * * *
22431803 ATTAAAAATCATTTGTAGGAG-TAAAAAACCATTTAAAGCGAGTAATTAGCCTTTCGAAGGCATA
1 ATTTAAAATCATTTATA-AAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATG
* * * *
22431867 AGTGATTATAAATAGACTTTGCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCGAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
** * *
22431932 TTTGATTATGATATGTTTTAACTAGAAATGTCAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* * * * * * *
22431974 ATTTAAAATCATTTATAAAATTATAAAACAACTTAAAGAGAGTAATTAGGCATTTGAAAGTAAGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATGA
* * * * * **
22432039 GTGACTATAAATGGACTTTTCTTGTCAATGGATAAG-TTTTGCTTCACGTTTCTTGATGTAAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * * *
22432103 TCCAATTATGATCTATTTTAACCAAAAATGAAAAAACATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAA-ATTCA
* * ** * ** ** *
22432145 ATTCAAAA-CGATTTATAAAGTTATAAAACCACTCAAAATGAGTGAGAAGGCATTAAAAGGCAAG
1 ATTTAAAATC-ATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATG
* * * * *
22432209 AGTGACTATAAACTAGATTTTTCTTATGAATGGATGGCTTTCTCTTGACAT-TTTCC-AATGCGA
64 AGTGACTATAAA-TGGACTTTTCTTGTCAATGGATGGCTTTCGCTT--CATGTTTCCTAATGCGA
* * *
22432272 ACATTCAATTATGTTCTATTTTAACCAGAAATGAACAAAAATTCA
126 ACATTCAATTATGATCTGTTTTAACTAGAAATGAA-AAAAATTCA
* * * * * *
22432317 GTTCAAAATTATTTATAAAGTTATAAAACCATTTAAAGTGAGTAA-TAAGGCCTTCGAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGG-CTTTGAAGGCATG
* * * * * * *
22432381 AGTAATTATAAATGGACTTTTCTTATCAATGAATGGCTTTTGCTTCACGTTTCCCAATGCGAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* *
22432446 TTCAATTATGATATGTTTTAACCAGAAATGAAAAAAATTTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAA-TTCA
* ** * * * * * ** * *
22432488 ATTCAAAGCCATTTATAAAGTTATAAAATCATTTAAAGAGACTAACAAGGCCTTCAAAGGCGTAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * *
22432553 GTGACT-TGAAATGGACTTCTCTTGTCAATCGATGGCTGTCGCTTCACGTTT-CTAGATGTGAAC
65 GTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTA-ATGCGAAC
* *
22432616 ATTCAATTATGATATGTTTTAACTAGAAATGTAAAAAATTCA
128 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
** *
22432658 ATTTAAAATCATTTATAAAGTTATAAAATAACTTAAA-CTGAGTAACTAGGCTTTCGAAGGTATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC-GAGTAACTAGGCTTT-GAAGGCATG
* * * ** * **
22432722 AGTGACTATTAATGGACTTTTCTTGTCAATGGATGG-GTTCTGCTTCAAGTTTTTTCATGTAAAC
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCATGTTTCCTAATGCGAAC
* * * *
22432786 A-TCTAATTATGATCCGTTTTAACCACAAATGAATAAACATTCA
128 ATTC-AATTATGATCTGTTTTAACTAGAAATGAA-AAAAATTCA
** * * * * * ** *
22432829 ATCCAAAATGATTTATAAAGTTATAAAACTACTCAAAACGAGTGAGAAGGCATTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTGAAGGCATGA
* * * * * **
22432894 GTGACTATAAATGGACTTTTCTTGTGAATGGACGGCTTTCACTTCACGTTT-TTCAATGTAAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAACA
* *
22432958 TTCAATTATGATCTGTTTTAACCAGAAATAAAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAAT-GAAAAAAATTCA
* * * * *
22433000 CTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTTGAAGGCATAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * * *
22433065 GTGACTATAAATGCACTTTTCTTGTCAATGTATAGCTTTTGCTTCACGTTT-CTCGATGCGAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAACA
* * * * * *
22433129 TCCAATCATGATTTGTTTTAACCAAAAAT-AAAAAAAATCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * ** * * * * *
22433169 ATTGAAAATGATTTATAAAGTTACAAAGCCACTTAAAATGAGTGACAAGGCCTTCGAATGTATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATGA
* * * * * * *
22433234 ATAACTATAAATGCAC-TTTCTTGTGAATGGATGTCTTTCGCTTCATGTTT-CTCAAGGCAAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAACA
* * * * * *
22433297 TGCAATCATGATCTGTTTTAACCAAAAATAAAAAAAATACCCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAAT--TCA
* * * * * * *
22433340 ATTGAAAATGATATATAAAGTTATAAAACCATTTAAAACGAGTGA-TGAGGTCTTCGAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGG-CTTTGAAGGCATG
* * * * * * *
22433404 AGTGACTATAAATGGACTTTTCTTGTTAGTGGATGGTTTTCGCTTCACGTTTTCTGATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
*
22433469 TTCAATTATGATCTGTTTTAACTAGAAATATAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAAT-GAAAAAAATTCA
* * * *
22433511 ATTCAAAATCATTTATAAAGTTATAAAACAACTTAAACCAAGTAACTAGGCTTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTT-GAAGGCATGA
* * * * * * * *
22433576 GTGACTATAAATAGACCTTTCTTGTCAATGAATGGCTTTCACTTCACGTTTCTTGATGCAAACAT
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACAT
* * * *
22433641 TGAATTATGATCTGTTTTAGCTAGAAATGTGAGAAAATT-A
130 TCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA
* **
22433681 TATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCCAAGGCATG
1 -ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTGAAGGCATG
* * * * * * *
22433746 AGTAACTATAAATAGACTTTTCTTGTTAATGGATGGCTTTCGCTTGACGTTTCTTGATGCGAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACA
* * *
22433811 TCCAATCATGATTTGTTTTAACT----A-GAAAAAAATTCA
129 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
* * * * * * * * *
22433847 ATTCAAAATCATTTACAAAGTTATAAAACCATTTAAAGTGAGTAACAAAGCCTTCGAAGGTAAGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAAC-TAGGCTTTGAAGGCATGA
** * * * ** *
22433912 AAGACAATAAATGGATTTTTCTTGTCAATGGATGACTTTTACTTCATGTTT-CTCGATGCGAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCGAACA
* *
22433976 TTCAATTACGATCTATTTT
129 TTCAATTATGATCTGTTTT
22433995 TGTCACGACC
Statistics
Matches: 8269, Mismatches: 1653, Indels: 907
0.76 0.15 0.08
Matches are distributed among these distances:
154 76 0.01
155 3 0.00
156 40 0.00
158 1 0.00
161 8 0.00
162 9 0.00
163 20 0.00
164 71 0.01
165 358 0.04
166 51 0.01
167 63 0.01
168 320 0.04
169 628 0.08
170 1463 0.18
171 3240 0.39
172 1284 0.16
173 380 0.05
174 75 0.01
175 62 0.01
176 10 0.00
177 5 0.00
178 8 0.00
179 7 0.00
180 3 0.00
181 7 0.00
182 4 0.00
183 5 0.00
184 7 0.00
185 5 0.00
186 14 0.00
187 2 0.00
188 6 0.00
189 12 0.00
190 10 0.00
191 4 0.00
192 8 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (169 bp):
ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTGAAGGCATGAG
TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCGAACATT
CAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCA
Found at i:22425274 original size:342 final size:339
Alignment explanation
Indices: 22423452--22433994 Score: 8201
Period size: 341 Copynumber: 30.9 Consensus size: 339
22423442 TAAAATTTTG
* * * * **
22423452 ATTTAAAATAATTTAT-AAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCATG
1 ATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * * *
22423516 AGTGACTATAAATGGACTTTTCTTGTTAATAGATGGCTTTC-ATATCATGTTT-TCAATGCGAGC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-TCACGTTTCTCGATGCGAAC
** * * * * *
22423579 ATTGGATTATGATTTGTTTTAGCTAGAAATGAAAGAAAGTTCAATTTAAAATTATTTATAAAGTT
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAATTCAATTCAAAATCATTTATAAAGTT
* * * * * * *
22423644 ATAAAACTACATAAAGCGAGTAACTAGCCTTTCGAAGGCATTG-GTGACTATGAATGGACTTTTG
193 ATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCA-TGAGTGACTATAAATGGACTTTTC
* * * * * *
22423708 TTCTCAATTGATGGCTTTCGCTTTACATTTTCTGATGCGAACATTCAATTATGATCTGTTTTAAT
256 TTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA-
* *
22423773 TAGAAATATAAAAAAAAATTCA
320 CAGAAATGT--AAAAAAATTCA
* * * *
22423795 ATTTAAAATCAATTATAAAGTTATAAAAACCACTTAAAGCGAGTAACTAGACTTTCAAATGCATG
1 ATTTAAAATCATTTATAAAGTTAT-AAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
** * * * * * *
22423860 AGTGACTATAAATAAACTTTTTTTTATCAATGGATGGTTTTTGCTTCACATTTCTTGATGCGAAC
65 AGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAAC
* * * *
22423925 ATTCAATTATAATCTGTTTTAACTAGAACTGAAAAGAAATTCAGTTAAAAATCATTTATAAAGTT
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAA-AAATTCAATTCAAAATCATTTATAAAGTT
* * *
22423990 ATAAAACCATTTAAAGTGAGTAACAAGGGCTTTGAAGGCATGAG-CAGTTATAAATGGA-TCTTT
193 ATAAAACCACTTAAAGTGAGTAACAA-GGCTTTGAAGGCATGAGTGA-CTATAAATGGACT-TTT
* * *
22424053 CTTGTTAATGGACGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTATTTTAA
255 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA
22424118 CCAGAAATGTAAAAAAATTCA
320 -CAGAAATGTAAAAAAATTCA
* * * * * * *
22424139 ATTTAAAATGATTTATAAAGTCATAAAACAATTTAAAGCAAGTAACTAGGCTTTCAAAGGCATGG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
22424204 GTGACTA-AAATTGACTTTTATTGTCAATGGATGGCTTTCGCTTCATG-TTCCCAATG-AAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
* ** * * * *
22424266 CCAATTATGATCCATTTTAACCAAAAATGAAAAATATTCAATTTAAAATCATTTTATAAAGTTAT
131 TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCA-TTTATAAAGTTAT
* * * * * *
22424331 AAAACCACATAAAATGAGTGAGAAGGCATTTGAAGGCATGAGTGACTATAAATAGACTGTTCTTG
195 AAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * * * *
22424396 TCAATGG-TGGATTTCGCTACATGTTTCCTGATGCAAACATCCAATTTTGATGTGGTTTAACAAA
259 TCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAAC-AG
* **
22424460 AAAT-AAAATAAAATTTTG
323 AAATGTAAA-AAAA-TTCA
* * * * **
22424478 ATTTAAAATAATTTAT-AAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCATG
1 ATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * * * * * * *
22424542 AGTAACTATAAATGAACTTTTCTTGTTAATGAATAGCTTTCACTTCATGTTTC-CCATACGAGCA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
** * * ** * *
22424606 TTGGATTATGATATGTTTTAGCTAGAAAAAAAAAGAAAGTTCAATTTAAAATTATTTATAAAGTT
130 TTCAATTATGATCTGTTTTAACTAGAAATGAAAA-AAA-TTCAATTCAAAATCATTTATAAAGTT
* * * * * * * * *
22424671 ATAAAACCACATAAAGCGAGTAACTAGGCTTTCGAACGTATGGGTGACTATGAATGTACTTTTGT
193 ATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * *
22424736 TCTCAATGGATGGCTTTCACTTCACATTTCCTCATGTGAACATTCAATTATGATCTGTTTTAATT
257 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA-C
***
22424801 AGAAAAACAAAAAAAATTCA
321 AG-AAATGTAAAAAAATTCA
* * * *
22424821 ATTTAAAATCAATTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGACTTTTGAATGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
22424886 GTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCTTGATGTGAACAC
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
* * * *
22424951 TCAATTATGATTTGTTTTAGCTAGAAATGAAAAGAAATTGAGTTCAAAATCATTTATAAAGTTAT
131 TCAATTATGATCTGTTTTAACTAGAAATGAAAA-AAATTCAATTCAAAATCATTTATAAAGTTAT
** * * *
22425016 AAAACCGTTTAAAGTGAGTAACAAAGGCTTTGAAGGCATGAGCGACTATAAATAGACCTTTCTTG
195 AAAACCACTTAAAGTGAGTAAC-AAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * *
22425081 TCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCGAACATTCAATTATCATCTGTTTTAAGCTG
259 TCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA-CAG
22425146 AAATGTAAAAACAATT-A
323 AAATGTAAAAA-AATTCA
* ** * * * *
22425163 ATATAAAATCATTTATAAAGTTATAAAACTGCTTGAAGCGAATAACTAGGTTTTCGAAGGAATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
** * * * *
22425228 GCAACTATAAATTGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTCCCAATG-AAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
* *
22425291 CCAATTATGATCTATTTTAACTA-AAATTGAAATAAAACTTCAATTCAAAATCATTTTATAAAGT
131 TCAATTATGATCTGTTTTAACTAGAAA-TGAAA-AAAA-TTCAATTCAAAATCA-TTTATAAAGT
* * * * * * * *
22425355 TATAAAAACACATAAAATGAGTGAGAAGGCATTTGAAGCCATGAGTTACTATAAATAGACTTTT-
192 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * * * * *
22425419 TTGGTCAATGGGTAGATTTTGCTTCATGTTTCCTGATGCAAACATCCAATTATGATGTGGTTTAA
256 TT-GTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA
* **
22425484 CAGAAAAT-AAAATAAAATTTTG
320 CAG-AAATGTAAA-AAAA-TTCA
* * ** * *
22425506 ATTTAAAATAATTTAT-AAGACTATAAAAAAACTTAAAGCGAGTAACAAGGCCTTCGAAGGCATG
1 ATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * * * *
22425570 AGCGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTC-CTTCATGTTTC-CTGGTGCAAAT
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCGAAC
* *
22425633 ATTCAATTATGATATGTTTTAACTAGAAATGAAAAAAAAATTCAATTCAAAATAATTTATAAAGT
129 ATTCAATTATGATCTGTTTTAACTAGAAATG--AAAAAAATTCAATTCAAAATCATTTATAAAGT
* * * * *
22425698 TATAAAACCATTTAAAGCGAGTAGA-AAGGCCTTTAAAGGCATGAGCGACTATAAATGGACCTTT
192 TATAAAACCACTTAAAGTGAGTA-ACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTT
* * ** * *
22425762 CTTGTCAATAGATGGCTTTCACTTCACAATTCCCAATGCGAACATTTAATTATGATCTGTTTTAA
255 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA
22425827 CCAGAAATGTAAAAAAATTCA
320 -CAGAAATGTAAAAAAATTCA
* * * * * * *
22425848 ATTTAAAATCGTTTTTAAAGTTA-AAAACAACTTAAAGTGAGCAACTAGACTTTCGAAGGCATAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* ** * * * * * *
22425912 GCGACTATAAATTAATTTTTCTTGTTAATGGATGGCTTTCACTTCATGTTT-TCCAATG-AAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CGATGCGAACA
* * * *
22425975 TCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTCAAAATCATTTTATAAATTT
130 TTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCAATTCAAAATCA-TTTATAAAGTT
* * * ***
22426040 ATAAAACCACATAAAATGAGTGACAAGGCATTTGAAGGCATGAGTGACTATAAAAATACTTTTCT
193 ATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * * * * * *
22426105 TGTCAATGGGTGGCTTTCGCTACATGTTTCCTGATGCAAACATCCAATTAGGATTTACTTTGACC
257 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCT-GTTTTAAC
*
22426170 AGAAATG-AAAAAAATTTA
321 AGAAATGTAAAAAAATTCA
* * * * *
22426188 GTTGAAAGTCATTTATAAAGTTATAAAACGATTTAAAGC-----A--A-G---T---A--CATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * ** ** * * *
22426237 GCGACTATAAATGGACTTTTCTTATCTATGGATAACTTTCGCTTCATATATAC-CAATGCAAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGT-TTCTCGATGCGAACA
* ** *
22426301 TTCAATTATGATCTATTTTAACTAGAAATGTAAAAAAAATTCAATAT-AACTTGATTTATAAAGT
130 TTCAATTATGATCTGTTTTAACTAGAAATG--AAAAAAATTCAAT-TCAAAATCATTTATAAAGT
* * * ** * * *
22426365 TATAAAACTACTTAAAATGAGTGACAAGGCATTCAAAGGCATAAGTGACTGTAAATAGACTTTTC
192 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * ** * ** * *
22426430 TTGTGAATAGATAGCTTTTGCTTCACACTTCCGAA-GCGAGTATTCAATTACGATATGTTTTAAC
256 TTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAAC
*
22426494 TAGAAA--TAAAGAAAA-TAA
321 -AGAAATGTAAA-AAAATTCA
* * * * * * *
22426512 ATTTAAAATCATTTATAAAGTTGTAAAACTATTTAAAGTGTGTAATTAGGCCTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
22426577 GTGGCTATAAATAGACTTTTCTTGCCAATGGATAGCTTTTGCTTCACGTTTCTCAATGCGAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
* * *
22426642 TCAATTATGATCTATTTTAACCAGAAATGAAAAAAATT-AGTTCAAAATCATTTATAAAGTTATA
131 TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTATA
* * * * * * * *
22426706 AAACTATTTAAAGCGTGTAATAAGGCCTTTGAAGGCATGAGTGGCTATAAATAGACTTTTCTTAT
196 AAACCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * *
22426771 CAATGGATGGTTTTCGCTTCACATTTCCTAATGTGAACATTCAATTATGATCAGTCTTAACCAGA
260 CAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA-CAGA
22426836 AATGTAAAAAAATTCA
324 AATGTAAAAAAATTCA
* * * * *
22426852 ATTTAAAATCATTTATAAAGTTAGAAAACTACTTAAAGCGAGAAACTAGGTTTTCGTAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* ** * ** * *
22426917 GTGACTATAAATGGACTTTTCTTATCAATCAATGGTTTTTTCTTCACGTTTC-CTATGCAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
* * * * *
22426981 CCAGTTATGATCCGTTTTAAATAGAAATGAAAAAAATTCAATTTAAAATCATTTTATAAAGTTAT
131 TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCA-TTTATAAAGTTAT
** * ** * * * *
22427046 AAAATGACTTAAAATTTGTGACAAGGCATTTGAAGGTATGAGTGACTA-CAATAGACTTTTCTTG
195 AAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * *
22427110 TCAATGGGTGGCTTTCG-TTACATGTTTCCTGATGCAAACATCCAA-TATGATGTGTTATAACAA
259 TCAATGGATGGCTTTCGCTT-CACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAACAG
* *
22427173 AAACTGAAAAAAATATTTTGA
323 AAA-TGTAAAAAA-A--TTCA
* ** * * *
22427194 A-TTAAAATAATTTATAAAACTATAAAACCATTTAAAGTGAGTAACTAAGCTTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
22427258 G-CAGCTATAAATTGACTTTTCTTGTCAATGGATGGCGTTCACTTCACATTTC-CTGATGTGAAC
66 GTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCGAAC
* * * *
22427321 TTTGAATTATTATCTGTTTTATCTAGAAATGAAAGAAAATTCAATT-----T-ATTTATAAAGTT
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAA-AAAATTCAATTCAAAATCATTTATAAAGTT
* * * * *
22427380 ATAAAACCA-TTGAGAGCT-AATAACAAGGTCTTCGAAGACATGAGTGACTATAAATGGACTTCT
193 ATAAAACCACTT-AAAG-TGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * *
22427443 CTTGTCAATGGATGGCTTTCACTTCACATTTTCGAATGCAAACATTCAATTATGATATGTTTTAA
255 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA
22427508 CCAGAAATGTAAAAAAATTCA
320 -CAGAAATGTAAAAAAATTCA
* * ** * * *
22427529 ATTTCAAATCATTTTATAAAGTTATAAAACCTCTTAAAATGAGTGACAAGGC-AT-GAAGGCATG
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * * * * *
22427592 AATGACTATTAATGGACTTTTCTTGTCAATGGATGGTTTTTGTTTTATGTTTC-CTGATGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCGAAC
* * *
22427656 ATCCAATTATGATCTGTTTTAATTAGAAATGAAAAAACATTCAATTTAAAATCATTTTATAAAGT
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAA-ATTCAATTCAAAATCA-TTTATAAAGT
* * *
22427721 TATGAAAA-CACTT-AAGATGAGTGACAAGGCATTTGAAGGCATGAGTGACTATAAATAGAGTTT
192 TAT-AAAACCACTTAAAG-TGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * *
22427784 TCTTGTAAATAGG-TGGCTTTCACTACATGTTTACTGATGTGAACA-TCTAATTATGATATGTTT
254 TCTTGTCAAT-GGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTC-AATTATGATCTGTTT
*
22427847 TAACCA-AATATGT-AAAACATGTCA
317 TAA-CAGAA-ATGTAAAAAAAT-TCA
* * * *
22427871 ATTTAAAATCATTTATAAAAG-TA-AAAACTCATTTAAAGCAAGTAACTAGCCTTTCAAAGGCAT
1 ATTTAAAATCATTTAT-AAAGTTATAAAAC-CACTTAAAGCGAGTAACTAGGCTTTCGAAGGCAT
* ** ** *
22427934 AAGCAACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCACGTTTC-CTGATGTGAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCGAA
* * * *
22427998 CATTGAATTACT-ATCTATTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAG
128 CATTCAATTA-TGATCTGTTTTAACTAGAAATGAAA-AAAATTCAATTCAAAATCATTTATAAAG
* * * * *
22428062 TTATAAAACTACTTAAAGTGAGTAACTATGCTTTTGAAGGCATGAGTGACTATAAATAGAATTTT
191 TTATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTT
* * * ** * * *
22428127 CTTGTCAATGGATGGCTTTTGCTTCACGTTTCTTAATGCAAACACCCAATTTATGTTCCGTTTCA
255 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAA-TTATGATCTGTTTTA
*
22428192 ACCAAAAATG-AAAAGAAATTCA
319 A-CAGAAATGTAAAA-AAATTCA
** * * *
22428214 ATTTAAAATCATTTTATAAAGTTATAAAACCACTTAAAATGAGTGACAAGG-TATTTGAAGGCAT
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT-TTCGAAGGCAT
** * * * * *
22428278 GAGTGACTATAAAAAGACTTTTCTTGTCAATGGGTGGCTTTCACTACATGTTTACT-AATGCGAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CTCGATGCGAA
* * * * ** *
22428342 C-CTCTAATTATGATATGTTTTAACCAAAAAATGAAAAAAATGTTGATTTAAAATCATTTATAAT
128 CATTC-AATTATGATCTGTTTTAA-CTAGAAATGAAAAAAAT-TCAATTCAAAATCATTTATAA-
* * * * * *
22428406 AG-TA-AAAACCATTTGAAGTGAGTACCTAGCCTTTCGAAAGCATGAGTGACTATAAATGGA-TT
189 AGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTT
* * * ** *
22428468 TTGCTTGTCAATAGATGGCTTTCGCTTCACATTGCCCGATGCGAACATTCGATTA-GA--TGCTT
253 TT-CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTG-TT
22428530 TTAACCAGAAATGTAAAAAAATTCA
316 TTAA-CAGAAATGTAAAAAAATTCA
* * * * *
22428555 ATTTAAAATCATTTATAAAGTTATAAAACAAGC-TGAAGCGAGTAATTAGGCTTTTGAAGGCGTG
1 ATTTAAAATCATTTATAAAGTTATAAAACCA-CTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * * * *
22428619 AGTGACTATAAATGGAATTTTCTTATCAACGGATGGCTTTCGCTTCACATTTCCCCATGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
* * * * * * * *
22428684 TCCAATTAT-ATTTCGTTTCAACCAAAAATGAAAAAATAATCAATTTAAAATCATTTTATGAAGT
130 TTCAATTATGATCT-GTTTTAACTAGAAATGAAAAAA-ATTCAATTCAAAATCA-TTTATAAAGT
* * ** * *
22428748 TATAAAACCACTTAAAATGAGTGACAAGGCATTCAAAGGCATGAGTGACTATAAATTGACTTCTC
192 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * *
22428813 TTGTCAATGGGTGGCTTTCGCTACACGTTTTCTAATGCAAACA-TCTAATTATGTTTTCTTTTAA
256 TTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTC-AATTATGATCTGTTTTAA
* * **
22428877 CCAAAAATGAAAAAAAATGTTG
320 -CAGAAATGTAAAAAAAT-TCA
* * * * * * *
22428899 GTTTAAAATCATTTATATGAG-TA-AAAATCCATTTAAAGTGAGTAACTAGCCTTTTGAAGGTAT
1 ATTTAAAATCATTTATA-AAGTTATAAAA-CCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCAT
* * * * * * * *
22428962 GAATGACTATAAATAGACTTTGCTTG-CTAATGGATAGCTTTTGCTTCATGTTTCCCAATGCGAA
64 GAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAA
** *
22429026 CATTTGATTATGATCTGTTTTAA-TCA-AAATTGTGAAAAAAATTTAATT-----T--TTTATAA
128 CATTCAATTATGATCTGTTTTAACT-AGAAA---TGAAAAAAATTCAATTCAAAATCATTTATAA
* * * *
22429082 AGTTATAAAA-TAGCTTAAAGTAAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATAGACT
189 AGTTATAAAACCA-CTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACT
* * * *
22429146 TTTCTTGTCAAT-GATGGCTTTTGCTTCACGTTT-CTCAATGCAAACTTTCAATTATGATTTGTT
252 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-AATGCGAACATTCAATTATGATCTGTT
*
22429209 TTAACTAGAAATGAAAAAAAATT--
316 TTAAC-AGAAATGTAAAAAAATTCA
* * *
22429232 ATGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCAT
1 AT-TT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCAT
* * *
22429297 GAGTGACTATAAATGGACTTTTCTTGTCAAT-GATGGCTTTTGCTTCACGTTTCTCAATGCAAAC
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAAC
* * *
22429361 TTTCAATTATGATTTGTTTTAACTAGAAATGAAAAAAAATT-ATGTTCAAAATCATTTATAAAGT
129 ATTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCA-ATTCAAAATCATTTATAAAGT
* * *
22429425 TATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
192 TATAAAACCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * *
22429490 TTATCAATGGATGGTTTTCACTTCAC-TTTCCCTAATGCGAACATTCAATGATAATATGTTTTAA
256 TTGTCAATGGATGGCTTTCGCTTCACGTTT-CCTAATGCGAACATTCAATTATGATCTGTTTTAA
* *
22429554 CTAAAAAT-AAAAAAAATTCA
320 C-AGAAATGTAAAAAAATTCA
* * * * * * * *
22429574 ATTCAAAATCAATTATAAAGTTATAAAACCATTTAAAGAGAGTAACAAGGTTTTCGAAGACATAA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* ** * * ****
22429639 GTGACTATAAATGGACTTTTTCTTATCAATGGATTCCTTTTGCTTCACGTTTCCCGAAAAAAACA
66 GTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
* * * * * * * *
22429704 TTTAATTATGATCTATTTGAACCAGAAACGAAAACAAAATTCAGTTTAAAATCATTTGTAAAGTT
130 TTCAATTATGATCTGTTTTAACTAGAAATG-AAA-AAAATTCAATTCAAAATCATTTATAAAGTT
* * *
22429769 ATAAAACCA--T----T---T-A-AA-GC----AA-G--T-AGTGGCAATAAATGAACTTTTCTT
193 ATAAAACCACTTAAAGTGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * ** * * * * *
22429814 CTCAATGGATGGCTTTCGCTTCATGTTTTTTGATGCGACCATTCAATTAAGATATATTTTAACTA
258 GTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAAC-A
22429879 GAAATG-AAAAAAA-T-A
322 GAAATGTAAAAAAATTCA
* * * * * * *
22429894 ATTCAAAATCATTTATAAACTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCGAAAGGGC-T
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCG-AA-GGCAT
* * ** * * * *
22429958 AAGTGAGTATAAAATTCAGTTTAAAATCATT-T--AT-GAT-CCATTCACTTCACGTTTC-CTGA
64 GAGTGACTAT-AAATGGACTTT----TC-TTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GA
* * * *
22430017 TGC-AAAAGTTCAATGATGATCTGTTTTAA-TCAGAAATGTCAAAAAATTCAATTTAAAATCATT
122 TGCGAACA-TTCAATTATGATCTGTTTTAACT-AGAAATG-AAAAAAATTCAATTCAAAATCATT
* * * * * *
22430080 TACAAAGTT-GAAAACAACTTAAAGCT-ACTATCTAGGCTTTTGAAGGCATGAGTGACTATAAAT
184 TATAAAGTTATAAAACCACTTAAAG-TGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAAT
* * * * * * *
22430143 GGACTTTTCTTGTCAATGGATGACTTTCACTTCATGTTT-CTCCATGCAAACATCCAATTGTGAT
247 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-AATGCGAACATTCAATTATGAT
* * *
22430207 CCGTTTTAACCA-AAATGGAAAAAAATTTA
311 CTGTTTTAA-CAGAAATGTAAAAAAATTCA
* ** ** * *
22430236 ATTTAAAATCATTTTCTAAAGTTATAAAATTACTTAAAATGAGTGA-TAAGGCATTCGAAGGCAT
1 ATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGGCTTTCGAAGGCAT
* * * * * ** * * ** * * ** *
22430300 AAATGATTATAAATAG-C-ATTCGAAGGCATAAGTGAT-TATAAATAGACTTTTC-TTT-TCAAT
64 GAGTGACTATAAATGGACTTTTC-TTGTCA-ATG-GATGGCT--TTCG-CTTCACGTTTCTCGAT
* * * * * * * *** * *
22430360 GTGTAGCTTTTGCTA-CAAGTTTCTCGATGCAAAC-ACCCAATCATGATGTGTTTTAATGAAAAA
123 GCG-AAC-ATT-CAATTATG-ATCT-G-TTTTAACTA--GAA--ATGA--------AA--AAAAT
* *** * * * *
22430423 TGAAAAAAAAATTTGATTTAAAATAATTTATAAGTCTATAAAACCATTTAAAGTAAGTAACTAGG
168 TCAATTCAAAA--TCA-TT----T-A--TA-AAGT-TATAAAACCACTTAAAGTGAGTAACAAGG
** *** * * * *
22430488 CTTTCGATTGCATGAACAACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTTATGTT
221 CTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
* * * * * * *
22430553 TACTGATGCGCACATTGAATTATGATCTGTTTGACCTAGAAATG-AGAGAAAATTCA
285 TCCTAATGCGAACATTCAATTATGATCTGTTTTAAC-AGAAATGTA-AAAAAATTCA
* * * * ** *
22430609 ATTTAAAATCATTTATAAAGTTATAAAATCACTTAAAGTGAGTGACAAGGCCCTCGAAAGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* *
22430674 GTGACTATAAATGGACTTTTCTTG-CAAATGGATGGCTTTTGCTTCACGTTTCTCGATGCAAACA
66 GTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
* * * * * * *
22430738 TCCAATCATGATCTGTTTTGA-TAAAAAATGAAGACAAATTCAATTTAAAATTATTTATAAAGTT
130 TTCAATTATGATCTGTTTTAACT-AGAAATGAA-AAAAATTCAATTCAAAATCATTTATAAAGTT
* * * * * * * * * *
22430802 ATAAAATCACTCTAAA-TGAGTGATAACGCATTCGAAGACATGAGTAACTATAACTGGAATTTTT
193 ATAAAACCACT-TAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * *
22430866 TTATGC-ATGGATGGCTATT-GCTTCATGTTTCCTTATGC-AAAATTCAATTATGATCTGTTTTA
256 TTGT-CAATGGATGGCT-TTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTA
* ** *
22430928 ACCAGGAACATAAAACAATTCA
319 A-CAGAAATGTAAAAAAATTCA
* * * * * * *
22430950 GTTCAAAATCATTTATAGAGTTATAAAACCATTTAAAGCAAGTAACAAGGCCTTT-GAAGCCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTCGAAGGCATG
* * * * * * * *
22431014 AGTGACAATAAATAGACCTTTCTTGTCGATGGATAGCTTCCGCTTCATGTTT-TCCCATGCGAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CGATGCGAAC
* * *
22431078 ATTCAATTATGATATGTTTTAACCACAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTA
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTA
* * ** * * *
22431143 TAAAGCAACTTAAAGCAAGTAACTAGGCTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTT
194 TAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * *
22431208 GTCAATGGATGGCTTTCACTTCATGTTTCTTGATGTGAACATTGAATTATGATCTGTTTTAGCTA
258 GTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAAC-A
*
22431273 GAAATG-AAAGAAAATTCT
322 GAAATGTAAA-AAAATTCA
* * * **
22431291 ATTTAAAATCATTTGTAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCCATCGAAGGCATGA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
22431356 GTGACTATACATAGACTTTTCTTATCAATGGATGGCTTTCGTTTCACGTTTCTCAATGTGAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
** * * * *
22431421 TTGATTATGATCTGTTTTAA-T-GCAAAATGTAAAAAAATTCAATTTAAAATCCTTTATGAACTT
131 TCAATTATGATCTGTTTTAACTAG--AAATG-AAAAAAATTCAATTCAAAATCATTTATAAAGTT
* * * * *
22431484 -TGGAAACAACTTAAAGCT-AATAACTAGGCTTTTGAATGCATGAGTGACTATAAATGGACTTTT
193 AT-AAAACCACTTAAAG-TGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * ** *
22431547 CTTGTCTATGGATGGCTTTCACTTCACGTTTCCTGATGCTAACATTGAATTATGATCCATTTTAG
255 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAA
22431612 CTATG-AATG-AAAGAAAATTCA
320 C-A-GAAATGTAAA-AAAATTCA
* * *
22431633 ATTTAAAATCATTTATAAAGTTGTAAAACCACTTAAAGTGAGTAACAAGG-TCTTCGAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCT-TTCGAAGGCATG
* * * * * * *
22431697 AGTGACTATAAATAGACTTTTCTAGTCAATGGGTGGC-TTCTACTACACGTTTATTGATGCGAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCGATGCGAAC
* * * * * * * * *
22431761 ATTCAACTATGATATGCTTTAACCAAAAATGAAAAAATTTCAATTAAAAATCATTTGTAGGAG-T
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCATTTATA-AAGTT
* * * ** * * * * *
22431825 AAAAAACCATTTAAAGCGAGTAATTAGCCTTTCGAAGGCATAAGTGATTATAAATAGACTTTGCT
193 ATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCT
* * ** *
22431890 TGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCGAACATTTGATTATGATATGTTTTAACT
257 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAAC-
*
22431955 AGAAATGTCAAAAAATTCA
321 AGAAATGTAAAAAAATTCA
* * * * * * *
22431974 ATTTAAAATCATTTATAAAATTATAAAACAACTTAAAGAGAGTAATTAGGCATTT-GAAAGTAAG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTCGAAGGCATG
* * * **
22432038 AGTGACTATAAATGGACTTTTCTTGTCAATGGATAAG-TTTTGCTTCACGTTTCTTGATGTAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTCACGTTTCTCGATGCGAAC
* * * *
22432102 ATCCAATTATGATCTATTTTAACCAAAAATGAAAAAACATTCAATTCAAAA-CGATTTATAAAGT
129 ATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAA-ATTCAATTCAAAATC-ATTTATAAAGT
* * * * ** * * *
22432166 TATAAAACCACTCAAAATGAGTGAGAAGGCATTAAAAGGCAAGAGTGACTATAAACTAGATTTTT
192 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAA-TGGACTTTT
* * * * * * *
22432231 CTTATGAATGGATGGCTTTCTCTTGACATTTTCC-AATGCGAACATTCAATTATGTTCTATTTTA
255 CTTGTCAATGGATGGCTTTCGCTTCAC-GTTTCCTAATGCGAACATTCAATTATGATCTGTTTTA
22432295 ACCAGAAATG-AACAAAAATTCA
319 A-CAGAAATGTAA-AAAAATTCA
* * * * * *
22432317 GTTCAAAATTATTTATAAAGTTATAAAACCATTTAAAGTGAGTAA-TAAGGCCTTCGAAGGCATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGGCTTTCGAAGGCATG
* * * * * * *
22432381 AGTAATTATAAATGGACTTTTCTTATCAATGAATGGCTTTTGCTTCACGTTTCCCAATGCGAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
* * **
22432446 TTCAATTATGATATGTTTTAACCAGAAATGAAAAAAATTTCAATTCAAAGCCATTTATAAAGTTA
130 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAA-TTCAATTCAAAATCATTTATAAAGTTA
* * * * ** * * *
22432511 TAAAATCATTTAAAGAGACTAACAAGGCCTTCAAAGGCGTAAGTGACT-TGAAATGGACTTCTCT
194 TAAAACCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTAT-AAATGGACTTTTCT
* * * *
22432575 TGTCAATCGATGGCTGTCGCTTCACGTTT-CTAGATGTGAACATTCAATTATGATATGTTTTAAC
257 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTA-ATGCGAACATTCAATTATGATCTGTTTTAAC
22432639 TAGAAATGT-AAAAAATTCA
321 -AGAAATGTAAAAAAATTCA
** *
22432658 ATTTAAAATCATTTATAAAGTTATAAAATAACTTAAA-CTGAGTAACTAGGCTTTCGAAGGTATG
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC-GAGTAACTAGGCTTTCGAAGGCATG
* * * * **
22432722 AGTGACTATTAATGGACTTTTCTTGTCAATGGATGG-GTTCTGCTTCAAGTTTTTTC-ATGTAAA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACG-TTTCTCGATGCGAA
* * * * * *
22432785 CA-TCTAATTATGATCCGTTTTAACCACAAATGAATAAACATTCAATCCAAAATGATTTATAAAG
128 CATTC-AATTATGATCTGTTTTAACTAGAAATGAA-AAAAATTCAATTCAAAATCATTTATAAAG
* * ** * * *
22432849 TTATAAAACTACTCAAAACGAGTGAGAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTT
191 TTATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * **
22432914 CTTGTGAATGGACGGCTTTCACTTCACGTTT-TTCAATGTAAACATTCAATTATGATCTGTTTTA
255 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-AATGCGAACATTCAATTATGATCTGTTTTA
**
22432978 ACCAGAAATAAAAAAAAATTCA
319 A-CAGAAATGTAAAAAAATTCA
* * * * *
22433000 CTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTT-GAAGGCATA
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGG-CTTTCGAAGGCATG
* * * *
22433064 AGTGACTATAAATGCACTTTTCTTGTCAATGTATAGCTTTTGCTTCACGTTTCTCGATGCGAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
* * * * * * * * *
22433129 TCCAATCATGATTTGTTTTAACCAAAAAT-AAAAAAAATCAATTGAAAATGATTTATAAAGTTAC
130 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTAT
* * * * * * * * *
22433193 AAAGCCACTTAAAATGAGTGACAAGGCCTTCGAATGTATGAATAACTATAAATGCAC-TTTCTTG
195 AAAACCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * *
22433257 TGAATGGATGTCTTTCGCTTCATGTTT-CTCAAGGCAAACATGCAATCATGATCTGTTTTAACCA
259 TCAATGGATGGCTTTCGCTTCACGTTTCCT-AATGCGAACATTCAATTATGATCTGTTTTAA-CA
* * *
22433321 AAAAT-AAAAAAAATACCCA
322 GAAATGTAAAAAAAT--TCA
* * * * * *
22433340 ATTGAAAATGATATATAAAGTTATAAAACCATTTAAAACGAGTGA-TGAGG-TCTTCGAAGGCAT
1 ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGGCT-TTCGAAGGCAT
* * * *
22433403 GAGTGACTATAAATGGACTTTTCTTGTTAGTGGATGGTTTTCGCTTCACGTTT-TCTGATGCAAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCGAA
*
22433467 CATTCAATTATGATCTGTTTTAACTAGAAATATAAAAAAATTCAATTCAAAATCATTTATAAAGT
128 CATTCAATTATGATCTGTTTTAACTAGAAAT-GAAAAAAATTCAATTCAAAATCATTTATAAAGT
* *** * * *
22433532 TATAAAACAACTTAAACCAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACCTTTC
192 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * *
22433597 TTGTCAATGAATGGCTTTCACTTCACGTTTCTTGATGCAAACATTGAATTATGATCTGTTTTAGC
256 TTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAAC
* *
22433662 TAGAAATGTGAGAAAATT-A
321 -AGAAATGTAAAAAAATTCA
* * *
22433681 TATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCCAAGGCATG
1 -ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * *
22433746 AGTAACTATAAATAGACTTTTCTTGTTAATGGATGGCTTTCGCTTGACGTTTCTTGATGCGAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACA
* * * *
22433811 TCCAATCATGATTTGTTTTAACT----A-GAAAAAAATTCAATTCAAAATCATTTACAAAGTTAT
130 TTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTAT
* * * * * ** * *
22433871 AAAACCATTTAAAGTGAGTAACAAAGCCTTCGAAGGTAAGAAAGACAATAAATGGATTTTTCTTG
195 AAAACCACTTAAAGTGAGTAAC-AAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* ** * * * *
22433936 TCAATGGATGACTTTTACTTCATGTTT-CTCGATGCGAACATTCAATTACGATCTATTTT
259 TCAATGGATGGCTTTCGCTTCACGTTTCCT-AATGCGAACATTCAATTATGATCTGTTTT
22433995 TGTCACGACC
Statistics
Matches: 8165, Mismatches: 1619, Indels: 839
0.77 0.15 0.08
Matches are distributed among these distances:
319 6 0.00
320 81 0.01
321 59 0.01
322 91 0.01
323 6 0.00
324 43 0.01
325 76 0.01
326 127 0.02
327 19 0.00
328 2 0.00
329 1 0.00
330 3 0.00
331 4 0.00
332 6 0.00
333 13 0.00
334 57 0.01
335 181 0.02
336 246 0.03
337 260 0.03
338 150 0.02
339 359 0.04
340 1042 0.13
341 1554 0.19
342 1518 0.19
343 1180 0.14
344 519 0.06
345 93 0.01
346 181 0.02
347 9 0.00
348 2 0.00
350 3 0.00
351 2 0.00
352 2 0.00
354 10 0.00
355 1 0.00
356 1 0.00
357 2 0.00
359 11 0.00
361 2 0.00
362 2 0.00
363 4 0.00
365 2 0.00
366 3 0.00
367 3 0.00
368 5 0.00
369 9 0.00
370 11 0.00
371 14 0.00
372 158 0.02
373 29 0.00
374 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (339 bp):
ATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCGAACAT
TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTATA
AAACCACTTAAAGTGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
AATGGATGGCTTTCGCTTCACGTTTCCTAATGCGAACATTCAATTATGATCTGTTTTAACAGAAA
TGTAAAAAAATTCA
Found at i:22428927 original size:19 final size:21
Alignment explanation
Indices: 22428903--22428943 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
22428893 ATGTTGGTTT
*
22428903 AAAAT-CATTTATA-TGAGTA
1 AAAATCCATTTAAAGTGAGTA
22428922 AAAATCCATTTAAAGTGAGTA
1 AAAATCCATTTAAAGTGAGTA
22428943 A
1 A
22428944 CTAGCCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 7 0.37
21 7 0.37
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (21 bp):
AAAATCCATTTAAAGTGAGTA
Found at i:22430318 original size:29 final size:29
Alignment explanation
Indices: 22430286--22430344 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
22430276 GAGTGATAAG
22430286 GCATTCGAAGGCATAAATGATTATAAATA
1 GCATTCGAAGGCATAAATGATTATAAATA
*
22430315 GCATTCGAAGGCATAAGTGATTATAAATA
1 GCATTCGAAGGCATAAATGATTATAAATA
22430344 G
1 G
22430345 ACTTTTCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.27
Consensus pattern (29 bp):
GCATTCGAAGGCATAAATGATTATAAATA
Found at i:22445836 original size:11 final size:11
Alignment explanation
Indices: 22445811--22445839 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
22445801 AATTGGAAGA
22445811 AAATTGGAGTT
1 AAATTGGAGTT
22445822 -AATTGGAGTT
1 AAATTGGAGTT
22445832 AAATTGGA
1 AAATTGGA
22445840 CATATTGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.34
Consensus pattern (11 bp):
AAATTGGAGTT
Found at i:22447610 original size:22 final size:22
Alignment explanation
Indices: 22447580--22447623 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
22447570 TTGTATTGAT
* *
22447580 ATCAGAGCTTTTGGTTTTAAAG
1 ATCAAAGCTTTTGGGTTTAAAG
22447602 ATCAAAGCTTTTGGGTTTAAAG
1 ATCAAAGCTTTTGGGTTTAAAG
22447624 TTGTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (22 bp):
ATCAAAGCTTTTGGGTTTAAAG
Found at i:22462371 original size:171 final size:171
Alignment explanation
Indices: 22462073--22462667 Score: 586
Period size: 171 Copynumber: 3.6 Consensus size: 171
22462063 GCCAAAAAAG
* *
22462073 ATCCAATTATGATCCGTTTTAACCAAAAATGAATAAAAATTCAATTTAAAATCATTTATAAAGTT
1 ATCCAATTATGATCCGTTTTAACCAAAAATGAATAAAAATTCAATTTAAAATAACTTATAAAGTT
* * * *
22462138 ATAAAACCACTTAAAGCAAATAACAAGGCTTTCGAAGGTATGAGTGA-TGATAAATTGACTTTTC
66 ATAAAACCACTTAAAGCAAGTAACAAGGCTTTCAAAGCTATGAGTGACT-ATAAATGGACTTTTC
*
22462202 TTGTCAATGGATGGCTTTTGCTTCACGTTTCTTAGTGCAAAC
130 TTGTCAATGGATGGCTTTTGCTTCACATTTCTTAGTGCAAAC
* * * *
22462244 ATCCAATTATGATCCATTTAAACCAAAAGTGAATAAAAATTCAATTTCAAATAACTTATAAAGTT
1 ATCCAATTATGATCCGTTTTAACCAAAAATGAATAAAAATTCAATTTAAAATAACTTATAAAGTT
*
22462309 ATAAAACCACTTAAAGCAAGTGACAAGGCTTTCAAAGCTATGAGTGACTATAAATGGACTTTTCT
66 ATAAAACCACTTAAAGCAAGTAACAAGGCTTTCAAAGCTATGAGTGACTATAAATGGACTTTTCT
* * * * ** *
22462374 TGTTAGTGGGTGGCTTTCG-TTACACATTTC-CCGATGCGAAC
131 TGTCAATGGATGGCTTTTGCTT-CACATTTCTTAG-TGCAAAC
** * ** ** * * *
22462415 ATCCAATTATGATGTGTTTTAACAAAAAATGAA-AATATTTTTGATTTAACACAATTTAT-AAGA
1 ATCCAATTATGATCCGTTTTAACCAAAAATGAATAA-AAATTCAATTTAAAATAACTTATAAAG-
* *
22462478 CTATAAAACCA-TT--------T-A-AA-G--TTCGAAGGC-ATGAGTGACTATAAATGGA-TTT
64 TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTC-AAAGCTATGAGTGACTATAAATGGACTTT
* *
22462527 TCTTGTCAATGGATAGCTTTTGCTTCACATTT-TCTAATGCAAAC
128 TCTTGTCAATGGATGGCTTTTGCTTCACATTTCT-TAGTGCAAAC
* * ** * * * *
22462571 ATCTAATCATGATCCGTTTTAGTCAAAAATGAATAAAAATTTAATTTAAAATTATTTATAAAATT
1 ATCCAATTATGATCCGTTTTAACCAAAAATGAATAAAAATTCAATTTAAAATAACTTATAAAGTT
* *
22462636 ATAAAACCACTTAAAGCGAGTAACAAAGCTTT
66 ATAAAACCACTTAAAGCAAGTAACAAGGCTTT
22462668 TGTACTCATT
Statistics
Matches: 340, Mismatches: 59, Indels: 51
0.76 0.13 0.11
Matches are distributed among these distances:
156 86 0.25
157 30 0.09
158 4 0.01
159 1 0.00
160 2 0.01
161 1 0.00
162 1 0.00
165 1 0.00
166 1 0.00
167 2 0.01
168 1 0.00
170 12 0.04
171 197 0.58
172 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (171 bp):
ATCCAATTATGATCCGTTTTAACCAAAAATGAATAAAAATTCAATTTAAAATAACTTATAAAGTT
ATAAAACCACTTAAAGCAAGTAACAAGGCTTTCAAAGCTATGAGTGACTATAAATGGACTTTTCT
TGTCAATGGATGGCTTTTGCTTCACATTTCTTAGTGCAAAC
Found at i:22462639 original size:156 final size:157
Alignment explanation
Indices: 22462348--22462651 Score: 346
Period size: 156 Copynumber: 1.9 Consensus size: 157
22462338 TTTCAAAGCT
* * * * * *
22462348 ATGAGTGACTATAAATGGACTTTTCTTGTTAGTGGGTGGCTTTCGTTACACATTTCCCGATGCGA
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGTTACACATTTCCCAATGCAA
* ** ** * * *
22462413 ACATCCAATTATGATGTGTTTTAACAAAAAATGAAAATATTTTTGATTTAACACAATTTATAAGA
66 ACATCCAATCATGATCCGTTTTAACAAAAAATGAAAATAAATTTAATTTAAAACAATTTATAAAA
*
22462478 CTATAAAACCATTTAAAGTTCGAAGGC
131 CTATAAAACCACTTAAAGTTCGAAGGC
* * *
22462505 ATGAGTGACTATAAATGGA-TTTTCTTGTCAATGGATAGCTTTTGCTT-CACATTTTCTAATGCA
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCG-TTACACATTTCCCAATGCA
* * **
22462568 AACATCTAATCATGATCCGTTTTAGTC-AAAAATGAATAA-AAATTTAATTTAAAATTATTTATA
65 AACATCCAATCATGATCCGTTTTA-ACAAAAAATGAA-AATAAATTTAATTTAAAACAATTTATA
*
22462631 AAATTATAAAACCACTTAAAG
128 AAACTATAAAACCACTTAAAG
22462652 CGAGTAACAA
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
156 97 0.80
157 24 0.20
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (157 bp):
ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGTTACACATTTCCCAATGCAA
ACATCCAATCATGATCCGTTTTAACAAAAAATGAAAATAAATTTAATTTAAAACAATTTATAAAA
CTATAAAACCACTTAAAGTTCGAAGGC
Found at i:22463029 original size:161 final size:162
Alignment explanation
Indices: 22462673--22465089 Score: 696
Period size: 171 Copynumber: 14.3 Consensus size: 162
22462663 GCTTTTGTAC
* * * *** * * *
22462673 TCATTCATAAGATTATAAAACCA-TTAAAACAAGTAACTAGGCTTTTGTATGCATGAGTGACTAT
1 TCATTTATAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTAT
* * * * * * * *
22462737 AAAT-AGACTTTTCTTATCAATGGGTGACATTCACAGCATGTTTCCTGATGCAAACATCCAATTA
66 AAATGA-ACTTTTCTTATCAATGGATGGCTTTCGCA-CACGCTTCCTAATGCAAACATCAAATTA
* * **
22462801 TGGTCTACTTTAATCAACAAT-GAAAACAATTTTGATTTAAAA
129 T-G---A---TAA-CAAAAATGGAAAACAA-ATCAATTTAAAA
* * *
22462843 TAATTTATAAGACTAA-AAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAAGCAAGAGTGACTA
1 TCATTTATAAG-CTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTA
* * *
22462907 TAAATGAATTTTTCTTATCAATGGATGGCTTTCGCAACAGGCTTCCTAATGTAAACATCAAATTA
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGC-ACACGCTTCCTAATGCAAACATCAAATTA
*
22462972 TGA-AA-AAAAATGGAAAACAAATCAATTTAAAC
129 TGATAACAAAAATGGAAAACAAATCAATTTAAAA
* * *
22463004 TCATTTATAAGGTAATAAAACCATTTAAAATGAGTGACTAGGCTTTCGAAGGCATGAGTGACTAT
1 TCATTTATAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTAT
* * * * *
22463069 AAAT-AGACTTTTCTT-GCTAATGGATGGCTTTTGCCACACACTTCCTAATGCAAGCATCTAATT
66 AAATGA-ACTTTTCTTATC-AATGGATGGCTTTCG-CACACGCTTCCTAATGCAAACATCAAATT
* ** *
22463132 ATGATTTTTTTAACTGAAAA-CAAAAAAAAATTCAATTTAAAA
128 ATGA------TAAC-AAAAATGGAAAACAAA-TCAATTTAAAA
* * *
22463174 TCATTGCTA-AAGCT-ATAAAACCACTTAAAGTGAGTAACAAGGC-TTCGAAGGCATGAGTGGCT
1 TCATT--TATAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACT
* * * * * * * * * *
22463236 ATAAAT-AGACATTTCTTATCAATGGGTGACTTTTGTTATACGTTTCCTAATGCGAACAACCAAT
64 ATAAATGA-ACTTTTCTTATCAATGGATGGCTTTCG-CACACGCTTCCTAATGCAAACATCAAAT
*
22463300 TATGATGTGTTTTAACCAAAAAT-GAAAGACAATTCAATTTAAAA
127 TATGA-------TAA-CAAAAATGGAAA-ACAAATCAATTTAAAA
* * * * * * *
22463344 TCATTTAGAAAG-TTATAAAACCACTGAAAGTGAGTAACAAGG-TTTCAAAGGCATCAGTGACTA
1 TCATTTA-TAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTA
* * * * *
22463407 TAAATGAAATTTTCTTGTCAATGGATGGCTTTCGCTCATG-TTTCTAATGCAAACATCTAAGTAT
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGCACACGCTTCCTAATGCAAACATC-AA--AT
* * * * * *
22463471 GATCTGTTTCAACCAAAAATGGAATAGAAGTACAATTTAAAC
127 --TATG-AT-AA-CAAAAATGGAAAACAAAT-CAATTTAAAA
* * *
22463513 TCATTCATAAGATTATAAAACCATTTACAA-TGAGTAACTAGGCTTTCGAAGGCATGAGTGACTA
1 TCATTTATAAGCTAATAAAACCATTTA-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTA
* * * * * * * * ** * *
22463577 TAAATGGACTTTTGTTGTCAATAGG-TGGCTTTTGCTTCAAGTTTCCCAATGTGAACATCCAATG
65 TAAATGAACTTTTCTTATCAAT-GGATGGCTTTCGC-ACACGCTTCCTAATGCAAACATCAAATT
* **** * * *
22463641 ATGGT--C-TGTTTTG--ATCAAA--AA-TGAAAA
128 ATGATAACAAAAATGGAAAACAAATCAATTTAAAA
* * *
22463668 TAATTTATAAGACTAA-AAACCCATTTAAAGTGAGTGACTAGGCGTTT-GAAGGCATGAGTGACT
1 TCATTTATAAG-CTAATAAAACCATTTAAAGTGAGTAACTAGGC-TTTCGAAGGCATGAGTGACT
* * * ** * ** **
22463731 ATAAATGGACTTTTCTTGTCAATTGATGGCTTTCGTTTCACGTTTCCCGATGTGAACATTC-AAT
64 ATAAATGAACTTTTCTTATCAATGGATGGCTTTCG-CACACGCTTCCTAATGCAAACA-TCAAAT
* * *
22463795 TATGATTTGTTGTAAGCAAAAATGAAAAACGATTCAATTTAAAA
127 TATGA-------TAA-CAAAAATGGAAAACAAATCAATTTAAAA
* * ** * *
22463839 TCATTTATAAAG-TTATAAAACCACTTAAAGCAAGTAA-TAAGACTTTCGAAGCCATGAGTGACT
1 TCATTTAT-AAGCTAATAAAACCATTTAAAGTGAGTAACT-AGGCTTTCGAAGGCATGAGTGACT
* * * * * * *
22463902 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATG-TTTCTCAATGTAAACATCAAAT
64 ATAAATGAACTTTTCTTATCAATGGATGGCTTTCGC-ACACGCTTCCT-AATGCAAACATCAAAT
* * * * * *
22463966 TATGATCTATTTTATTCAAAAGT-AAAAAAAAAGTACAATATGAAC
127 TATGA--TA----A--CAAAAATGGAAAACAAA-T-CAATTTAAAA
* * * * * * * * *
22464011 TTATTCATAAGATTATAAAACCATTTAAAATGAGTAACTAGACTTTCTCAA-GCAAGAGTGACTG
1 TCATTTATAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTC-GAAGGCATGAGTGACTA
* ** * * * * * * * * * * * * *
22464075 TAAGTGGTCTTTTATTGTCAGTGGATAGCATTAGCTTCTCGTTTCATGATGCAAATATCCAATTA
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGC-ACACGCTTCCTAATGCAAACATCAAATT-
* * * *
22464140 CAATCTGGTTTAACCCAAAAT-GAAAA-AAATTCAATTCAAAG
128 --A--T-G-ATAA-CAAAAATGGAAAACAAA-TCAATTTAAAA
* * * * * * ** *
22464181 TCATTTATAAAG-TTATAACACCACTTAAAGCGAGTAACAAGGCTTTCAAAACCATTAGTGA-TA
1 TCATTTAT-AAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACT-
* * * * * * * *
22464244 ATAAAT-AGGCTTTTGTTGTCAATGGGTTGCTTTCACTACACGTTTCCCAATGCAAACATCCAAT
64 ATAAATGA-ACTTTTCTTATCAATGGATGGCTTTCGC-ACACGCTTCCTAATGCAAACAT-CAA-
* *
22464308 TATGATATGTTTAAACCAAAAAT--AAAAAAAACTTCAATTTAAAA
125 -AT--TATG-AT-AA-CAAAAATGGAAAACAAA--TCAATTTAAAA
* ** * *
22464352 TCATTTATAAGACTAA-AAAATCATTTAAAGCAAGTAACTAGGCTTTTGAAGGTATGAGTGACTA
1 TCATTTATAAG-CTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTA
* * * * ** * * **
22464416 TAAATGGACTTTTCTTGTTAATGGATGGCTTTTGCTTTAC-ATTTCTCAATAAAAACATCCAATG
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGC-ACACGCTTCCT-AATGCAAACAT-CAA--
* * * *
22464480 ATGATGTGTTTTAAGCCAAAAT-GAACAA-AATTCAATTTAAAA
125 AT--TATG--ATAA-CAAAAATGGAA-AACAAATCAATTTAAAA
** * * * * * * * ** *
22464522 TCATTTATAAAATGATAAAACCACTTAAAG-CATGTAACAAGGCATTCAAAGGTAAAAGTCACTA
1 TCATTTATAAGCTAATAAAACCATTTAAAGTGA-GTAACTAGGCTTTCGAAGGCATGAGTGACTA
* * * * * * * * *
22464586 TCAATGAACTTTTCTTATCAAAT-GACGGCTTACGCTTCATGTTTCTTGATGCGAACATCCAATG
65 TAAATGAACTTTTCTTATC-AATGGATGGCTTTCGC-ACACGCTTCCTAATGCAAACAT-CAA--
* * *
22464650 ATGATTTGTTATAAGCAAAAATGAAAAAAAAATCAATTTAAAA
125 AT--TATG--ATAA-CAAAAATGGAAAACAAATCAATTTAAAA
* * * * * * * *
22464693 TCATTTATAAAG-TTATAAAACCACTTAAAGTGACTAACAAGGCTTTTGAAGCCATCAGTGAATA
1 TCATTTAT-AAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTA
* * * * ** * * * * *
22464757 TAAATGGACTTTTTTTGTCAATGTATTACTTTCGCTTCATG-TTTCTCAATGCAAACATCCAATG
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGC-ACACGCTTCCT-AATGCAAACATCAAATT
* * * *
22464821 ATGATCTATTTTCACCATAAAT-GAAAAAAAATTCAACTTACAA
128 ATGA--TA-----A-CAAAAATGGAAAACAAA-TCAATTTAAAA
* * ** * *
22464864 TCATTTATAATG-TTATAAAACCAGTTAAAGCAAGTAA-TAGGGCATTCAAAGGCATGAGTGACT
1 TCATTTATAA-GCTAATAAAACCATTTAAAGTGAGTAACTA-GGCTTTCGAAGGCATGAGTGACT
* * *** * * * * * *
22464927 ATAAAT-AGATTTTTCTTTTCAATGGACAACTCTCGTTAAATGTTTCCTAATGTAAACATCAAAT
64 ATAAATGA-ACTTTTCTTATCAATGGATGGCTTTCG-CACACGCTTCCTAATGCAAACATCAAAT
* *
22464991 TATGATAAATTTTAAACAAAAAT-GAAAAAAAATTCAATTTAAAG
127 TATG----A---T-AACAAAAATGGAAAACAAA-TCAATTTAAAA
* * * * *
22465035 TCATTTATAAGATAACAAAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGCAT
1 TCATTTATAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCAT
22465090 TAGTAATCAT
Statistics
Matches: 1721, Mismatches: 382, Indels: 287
0.72 0.16 0.12
Matches are distributed among these distances:
154 3 0.00
155 106 0.06
156 9 0.01
159 2 0.00
160 5 0.00
161 123 0.07
162 11 0.01
163 2 0.00
164 1 0.00
165 1 0.00
166 9 0.01
167 4 0.00
168 40 0.02
169 141 0.08
170 480 0.28
171 614 0.36
172 146 0.08
173 14 0.01
175 3 0.00
176 2 0.00
177 4 0.00
178 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (162 bp):
TCATTTATAAGCTAATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTAT
AAATGAACTTTTCTTATCAATGGATGGCTTTCGCACACGCTTCCTAATGCAAACATCAAATTATG
ATAACAAAAATGGAAAACAAATCAATTTAAAA
Found at i:22463285 original size:169 final size:170
Alignment explanation
Indices: 22462984--22465401 Score: 1191
Period size: 171 Copynumber: 14.3 Consensus size: 170
22462974 AAAAAAAATG
* * * * * * *
22462984 GAAAACAAA-TCAATTTAAACTCATT-TATAAGGTAATAAAACCATTTAAAATGAGTGACTAGGC
1 GAAAAAAAATTCAATTTAAAATCATTCTATAA-GTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * **
22463047 TTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG-CTAATGGATGGCTTTTGCCACACACT
65 TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTC-AATGGATGGCTTTTGTCATACGTT
* **
22463111 TCCTAATGCAAGCATCTAATTATGAT-TTTTTTAACTGAAAAC
129 TCCTAATGCAA-CATCTAATTATGATCTGTTTTAACCAAAAAC
* *
22463153 AAAAAAAAATTCAATTTAAAATCATTGCTA-AAGCTATAAAACCACTTAAAGTGAGTAACAAGGC
1 GAAAAAAAATTCAATTTAAAATCATT-CTATAAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * * *
22463217 -TTCGAAGGCATGAGTGGCTATAAATAGACATTTCTTATCAATGGGTGACTTTTGTTATACGTTT
65 TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTCATACGTTT
* * * *
22463281 CCTAATGCGAACAACCAATTATGATGTGTTTTAACCAAAAAT
130 CCTAATGC-AACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * *
22463323 GAAAGACAATTCAATTTAAAATCATT-TAGAAAGTTATAAAACCACTGAAAGTGAGTAACAAGG-
1 GAAAAAAAATTCAATTTAAAATCATTCTA-TAAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * *
22463386 TTTCAAAGGCATCAGTGACTATAAAT-GAAATTTTCTTGTCAATGGATGGCTTTCGCTCAT--GT
65 TTTCGAAGGCATGAGTGACTATAAATAGACA-TTTCTTGTCAATGGATGGCTTTTG-TCATACGT
* * *
22463448 TT-CTAATGCAAACATCTAAGTATGATCTGTTTCAACCAAAAATG
128 TTCCTAATGC-AACATCTAATTATGATCTGTTTTAACCAAAAA-C
* * * * * * *
22463492 GAATAGAAGTACAATTTAAACTCATTC-ATAAGATTATAAAACCATTTACAA-TGAGTAACTAGG
1 GAAAAAAAATTCAATTTAAAATCATTCTATAAG-TTATAAAACCACTTA-AAGTGAGTAACAAGG
* * *
22463555 CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTTGTCAATAGG-TGGCTTTTGCTTCA-A-
64 CTTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAAT-GGATGGCTTTTG--TCATAC
* * * * * * * *
22463617 GTTTCCCAATGTGAACATCCAATGATGGTCTGTTTTGATCAAAAAT
126 GTTTCCTAATG-CAACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * *** ** * * *
22463663 G----AAAA-T-AATTTATAA-GA--CTAAAAACCCATTTAA--A-GT---G--AGTGACTAGGC
1 GAAAAAAAATTCAATTTAAAATCATTCT-ATAAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * * *
22463711 GTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTCGT-TTCACGT
65 -TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTCAT-ACGT
** * * * * *
22463774 TTCCCGATGTGAACAT-TCAATTATGATTTGTTGTAAGCAAAAAT
128 TTCCTAATG-CAACATCT-AATTATGATCTGTTTTAACCAAAAAC
** ** * *
22463818 GAAAAACGATTCAATTTAAAATCATT-TATAAAGTTATAAAACCACTTAAAGCAAGTAATAAGAC
1 GAAAAAAAATTCAATTTAAAATCATTCTAT-AAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * *
22463882 TTTCGAAGCCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAT--GT
65 TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTG--TCATACGT
* * * ** **
22463945 TT-CTCAATGTAAACATCAAATTATGATCTATTTTATTCAAAAGT
128 TTCCT-AATG-CAACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * * * * * * * *
22463989 AAAAAAAAAGTACAATATGAACTTATTC-ATAAGATTATAAAACCATTTAAAATGAGTAACTAGA
1 GAAAAAAAA-TTCAATTTAAAATCATTCTATAAG-TTATAAAACCACTTAAAGTGAGTAACAAGG
* * * * * * * * * * * *
22464053 CTTTCTCAA-GCAAGAGTGACTGTAAGTGGTCTTTTATTGTCAGTGGATAGCATTAGCTTC-T-C
64 CTTTC-GAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTG--TCATAC
* * * * ** * * *
22464115 GTTTCATGATGCAAATATCCAATTACAATCTGGTTTAACCCAAAAT
126 GTTTCCTAATGC-AACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * *
22464161 G-AAAAAAATTCAATTCAAAGTCATT-TATAAAGTTATAACACCACTTAAAGCGAGTAACAAGGC
1 GAAAAAAAATTCAATTTAAAATCATTCTAT-AAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* ** * * * * * * ** *
22464224 TTTCAAAACCATTAGTGA-TAATAAATAGGCTTTTGTTGTCAATGGGTTGC-TTTCACTACACGT
65 TTTCGAAGGCATGAGTGACT-ATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTC-ATACGT
* * * *
22464287 TTCCCAATGCAAACATCCAATTATGATATGTTTAAACCAAAAA-
128 TTCCTAATGC-AACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * * * ** *
22464330 TAAAAAAAACTTCAATTTAAAATCATT-TATAAGACTAAAAAATCATTTAAAGCAAGTAACTAGG
1 GAAAAAAAA-TTCAATTTAAAATCATTCTATAAG-TTATAAAACCACTTAAAGTGAGTAACAAGG
* * * * * * *
22464394 CTTTTGAAGGTATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTTG-CTTTACAT
64 CTTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTC-ATACGT
** * * * *
22464458 TT-CTCAATAAAAACATCCAATGATGATGTGTTTTAAGCC-AAAAT
128 TTCCT-AAT-GCAACATCTAATTATGATCTGTTTTAA-CCAAAAAC
* * * *
22464502 G-AACAAAATTCAATTTAAAATCATT-TATAAAATGATAAAACCACTTAAAG-CATGTAACAAGG
1 GAAAAAAAATTCAATTTAAAATCATTCTAT-AAGTTATAAAACCACTTAAAGTGA-GTAACAAGG
* * * ** * * * * * **
22464564 CATTCAAAGGTAAAAGTCACTATCAAT-GAACTTTTCTTATCAAAT-GACGGCTTACGCTTCAT-
64 CTTTCGAAGGCATGAGTGACTATAAATAG-ACATTTCTTGTC-AATGGATGGCTTTTG--TCATA
* * * * * * * *
22464626 -GTTTCTTGATGCGAACATCCAATGATGATTTGTTATAAGCAAAAAT
125 CGTTTCCTAATGC-AACATCTAATTATGATCTGTTTTAACCAAAAAC
* *
22464672 GAAAAAAAAATCAATTTAAAATCATT-TATAAAGTTATAAAACCACTTAAAGTGACTAACAAGGC
1 GAAAAAAAATTCAATTTAAAATCATTCTAT-AAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * * * * * * ** *
22464736 TTTTGAAGCCATCAGTGAATATAAATGGACTTTTTTTGTCAATGTATTACTTTCGCTTCAT--GT
65 TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTG--TCATACGT
* * * * * *
22464799 TT-CTCAATGCAAACATCCAATGATGATCTATTTTCACCATAAAT
128 TTCCT-AATGC-AACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * ** * *
22464843 GAAAAAAAATTCAACTTACAATCATT-TATAATGTTATAAAACCAGTTAAAGCAAGTAATAGGGC
1 GAAAAAAAATTCAATTTAAAATCATTCTATAA-GTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * ** * *** * * * * *
22464907 ATTCAAAGGCATGAGTGACTATAAATAGATTTTTCTTTTCAATGGACAACTCTCGTTAAATGTTT
65 TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTCATACGTTT
* * *** * *
22464972 CCTAATGTAAACATCAAATTATGATAAATTTTAAACAAAAAT
130 CCTAATG-CAACATCTAATTATGATCTGTTTTAACCAAAAAC
* * * * * *
22465014 GAAAAAAAATTCAATTTAAAGTCATT-TATAAGATAACAAAACTATTTAAAGCGAGTAACAAGGC
1 GAAAAAAAATTCAATTTAAAATCATTCTATAAG-TTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * * * *
22465078 TTTCGAAGGCATTAGT-AATCAT-AATGGA-TTTGTTTTGTCAATGGATAGAC-TTTGCTTCAT-
65 TTTCGAAGGCATGAGTGACT-ATAAATAGACATT-TCTTGTCAATGGAT-GGCTTTTG--TCATA
* * * * * *
22465138 -GTTTCCCAATGTGAACATCCAATGATGTTCTGTTTTCACCAAAAA-
125 CGTTTCCTAATG-CAACATCTAATTATGATCTGTTTTAACCAAAAAC
* **
22465183 -TAAAAAAATTCAATTTAAAATCATT-TATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGAA
1 GAAAAAAAATTCAATTTAAAATCATTCTAT-AAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
* * * * ** * * * *
22465246 ATTCGAAGGGATGAGTGACTATAAATGGACTTTTCTTGTCAAAAGATGACTTTCG-CTTCACATT
65 TTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTCAT-ACGTT
* * * * * *
22465310 T-CTCGATGGGAACATCCAATGATGATTTGTTTTAAGCAAAAA-
129 TCCT-AAT-GCAACATCTAATTATGATCTGTTTTAACCAAAAAC
*
22465352 -AAAAAAAATTCAATTTAAAATAATT-TATAAAGTTATAAAACCACTTAAAG
1 GAAAAAAAATTCAATTTAAAATCATTCTAT-AAGTTATAAAACCACTTAAAG
22465402 CGATGAGTGA
Statistics
Matches: 1741, Mismatches: 394, Indels: 228
0.74 0.17 0.10
Matches are distributed among these distances:
153 1 0.00
154 2 0.00
155 94 0.05
156 3 0.00
159 2 0.00
160 2 0.00
161 9 0.01
162 3 0.00
163 11 0.01
164 4 0.00
165 8 0.00
166 3 0.00
167 3 0.00
168 108 0.06
169 251 0.14
170 498 0.29
171 574 0.33
172 159 0.09
173 5 0.00
174 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (170 bp):
GAAAAAAAATTCAATTTAAAATCATTCTATAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCT
TTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGTCATACGTTTC
CTAATGCAACATCTAATTATGATCTGTTTTAACCAAAAAC
Found at i:22463378 original size:170 final size:171
Alignment explanation
Indices: 22462977--22463666 Score: 665
Period size: 170 Copynumber: 4.1 Consensus size: 171
22462967 AATTATGAAA
* * * * * * *
22462977 AAAAATGGAAA-ACAAATCAATTTAAACTCATTTATAAGGTAATAAAACCATTTAAAATGAGTGA
1 AAAAAT-GAAAGACAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAA
* *
22463041 CTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG-CTAATGGATGGCTTTTGC-C
65 CAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTC-AATGGATGGCTTTTGCTC
* ** * * *
22463104 ACACACTTCCTAATGC-AAGCATCTAATTATGAT-TTTTTTAACT
129 ATA-GTTTCCTAATGCGAA-CATCCAATTATGATCTGTTTTAACC
* ** * * ** *
22463147 GAAAACAAAAAAAAATTCAATTTAAAATCATTGCTAAAGCTATAAAACCACTTAAAGTGAGTAAC
1 AAAAATGAAAGACAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
* * * * *
22463212 AAGGC-TTCGAAGGCATGAGTGGCTATAAATAGACATTTCTTATCAATGGGTGACTTTTG-TTAT
66 AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGCTCAT
* *
22463275 ACGTTTCCTAATGCGAACAACCAATTATGATGTGTTTTAACC
131 A-GTTTCCTAATGCGAACATCCAATTATGATCTGTTTTAACC
* *
22463317 AAAAATGAAAGACAATTCAATTTAAAATCATTTAGAAAGTTATAAAACCACTGAAAGTGAGTAAC
1 AAAAATGAAAGACAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
* * * *
22463382 AAGG-TTTCAAAGGCATCAGTGACTATAAAT-GAAATTTTCTTGTCAATGGATGGCTTTCGCTCA
66 AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACA-TTTCTTGTCAATGGATGGCTTTTGCTCA
* * * *
22463445 T-GTTT-CTAATGCAAACATCTAAGTATGATCTGTTTCAACC
130 TAGTTTCCTAATGCGAACATCCAATTATGATCTGTTTTAACC
* * * * *
22463485 AAAAATGGAATAGA-AGTACAATTTAAACTCATTCAT-AAGATTATAAAACCATTTACAA-TGAG
1 AAAAAT-GAA-AGACAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTA-AAGTGAG
* * * *
22463547 TAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTTGTCAATAGG-TGGCTTTTG
62 TAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAAT-GGATGGCTTTTG
* * * * * *
22463611 CTTCA-AGTTTCCCAATGTGAACATCCAATGATGGTCTGTTTTGATC
126 C-TCATAGTTTCCTAATGCGAACATCCAATTATGATCTGTTTTAACC
22463657 AAAAATGAAA
1 AAAAATGAAA
22463667 ATAATTTATA
Statistics
Matches: 425, Mismatches: 77, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
168 38 0.09
169 126 0.30
170 213 0.50
171 17 0.04
172 31 0.07
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (171 bp):
AAAAATGAAAGACAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGATGGCTTTTGCTCAT
AGTTTCCTAATGCGAACATCCAATTATGATCTGTTTTAACC
Found at i:22463815 original size:155 final size:155
Alignment explanation
Indices: 22463519--22463822 Score: 416
Period size: 155 Copynumber: 2.0 Consensus size: 155
22463509 AAACTCATTC
*
22463519 ATAAGATTATAAAACCATTTACAATGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGG
1 ATAAGACTATAAAACCATTTACAATGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * *
22463584 ACTTTTGTTGTCAATAGGTGGCTTTTGCTTCAAGTTTCCCAATGTGAACATCCAATGATGGTCTG
66 ACTTTTCTTGTCAATAGATGGCTTTCGCTTCAAGTTTCCCAATGTGAACATCCAATGATGATCTG
* * *
22463649 TTTTGATCAAAAATGAAAATAATTT
131 TTGTAAGCAAAAATGAAAATAATTT
*
22463674 ATAAGACTA-AAAACCCATTTA-AAGTGAGTGACTAGGCGTTT-GAAGGCATGAGTGACTATAAA
1 ATAAGACTATAAAA-CCATTTACAA-TGAGTAACTAGGC-TTTCGAAGGCATGAGTGACTATAAA
* * * * * *
22463736 TGGACTTTTCTTGTCAATTGATGGCTTTCGTTTCACGTTTCCCGATGTGAACATTCAATTATGAT
63 TGGACTTTTCTTGTCAATAGATGGCTTTCGCTTCAAGTTTCCCAATGTGAACATCCAATGATGAT
*
22463801 TTGTTGTAAGCAAAAATGAAAA
128 CTGTTGTAAGCAAAAATGAAAA
22463823 ACGATTCAAT
Statistics
Matches: 130, Mismatches: 16, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
154 6 0.05
155 121 0.93
156 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (155 bp):
ATAAGACTATAAAACCATTTACAATGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGG
ACTTTTCTTGTCAATAGATGGCTTTCGCTTCAAGTTTCCCAATGTGAACATCCAATGATGATCTG
TTGTAAGCAAAAATGAAAATAATTT
Found at i:22463861 original size:495 final size:496
Alignment explanation
Indices: 22463190--22464094 Score: 1226
Period size: 495 Copynumber: 1.8 Consensus size: 496
22463180 CTAAAGCTAT
*
22463190 AAAACCACTTAAAGTGAGTAACAAGGCTTCGAAGGCATGAGTGGCTATAAATAGACATTTCTTAT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTAT
* * * *
22463255 CAATGGGTGACTTTTGTTATACGTTTCCTAATGCGAACAACCAATTATGATGTGTTTTAACCAAA
66 CAATGGATGACTTTCGTTATACGTTTCCCAATGCGAACAACCAATTATGATGTGTTGTAACCAAA
* **
22463320 AATGAAAGACAATTCAATTTAAAATCATTTAGAAAGTTATAAAACCACTGAAAGTGAGTAACAAG
131 AATGAAAAACAATTCAATTTAAAATCATTTAGAAAGTTATAAAACCACTGAAAGCAAGTAACAAG
* *
22463385 -GTTTCAAAGGCATCAGTGACTATAAATGAAATTTTCTTGTCAATGGATGGCTTTCGC-TCATGT
196 ACTTTCAAAGCCATCAGTGACTATAAATGAAATTTTCTTGTCAATGGATGGCTTTCGCTTCATGT
* * ** * * *
22463448 TTCT-AATGCAAACATCTAAGTATGATCTGTTTCAACCAAAAATGGAATAGAAGTACAATTTAAA
261 TTCTCAATGCAAACATCAAAGTATGATCTATTTCAACCAAAAATAAAAAAAAAGTACAATATAAA
* * * *
22463512 CTCATTCATAAGATTATAAAACCATTTACAATGAGTAACTAGGCTTTC-GAAGGCATGAGTGACT
326 CTCATTCATAAGATTATAAAACCATTTAAAATGAGTAACTAGACTTTCTCAA-GCAAGAGTGACT
*
22463576 ATAAATGGACTTTTGTTGTCAATAGGTGGCTTTTGCTTCAAGTTTCCCAATGTGAACATCCAATG
390 ATAAATGGACTTTTATTGTCAATAGGTGGCTTTTGCTTCAAGTTTCCCAATGTGAACATCCAATG
22463641 ATGGTCTGTTTTGATCAAAAATGAAAATAATTTATAAGACTA
455 ATGGTCTGTTTTGATCAAAAATGAAAATAATTTATAAGACTA
* * * * * *
22463683 AAAACCCATTTAAAGTGAGTGACTAGGCGTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
1 AAAA-CCACTTAAAGTGAGTAACAAGGC-TTCGAAGGCATGAGTGACTATAAATAGACATTTCTT
* * * * * ** * *
22463748 GTCAATTGATGGCTTTCGTT-TCACGTTTCCCGATGTGAACATTCAATTATGATTTGTTGTAAGC
64 ATCAATGGATGACTTTCGTTAT-ACGTTTCCCAATGCGAACAACCAATTATGATGTGTTGTAACC
* * * *
22463812 AAAAATGAAAAACGATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAAT
128 AAAAATGAAAAACAATTCAATTTAAAATCATTTAGAAAGTTATAAAACCACTGAAAGCAAGTAAC
* * * * *
22463877 AAGACTTTCGAAGCCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA
193 AAGACTTTCAAAGCCATCAGTGACTATAAATGAAATTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * ** *
22463942 TGTTTCTCAATGTAAACATCAAATTATGATCTATTTTATTCAAAAGTAAAAAAAAAGTACAATAT
258 TGTTTCTCAATGCAAACATCAAAGTATGATCTATTTCAACCAAAAATAAAAAAAAAGTACAATAT
* *
22464007 GAACTTATTCATAAGATTATAAAACCATTTAAAATGAGTAACTAGACTTTCTCAAGCAAGAGTGA
323 AAACTCATTCATAAGATTATAAAACCATTTAAAATGAGTAACTAGACTTTCTCAAGCAAGAGTGA
* * *
22464072 CTGTAAGTGGTCTTTTATTGTCA
388 CTATAAATGGACTTTTATTGTCA
22464095 GTGGATAGCA
Statistics
Matches: 348, Mismatches: 57, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
493 4 0.01
494 21 0.06
495 142 0.41
496 50 0.14
497 10 0.03
498 119 0.34
499 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (496 bp):
AAAACCACTTAAAGTGAGTAACAAGGCTTCGAAGGCATGAGTGACTATAAATAGACATTTCTTAT
CAATGGATGACTTTCGTTATACGTTTCCCAATGCGAACAACCAATTATGATGTGTTGTAACCAAA
AATGAAAAACAATTCAATTTAAAATCATTTAGAAAGTTATAAAACCACTGAAAGCAAGTAACAAG
ACTTTCAAAGCCATCAGTGACTATAAATGAAATTTTCTTGTCAATGGATGGCTTTCGCTTCATGT
TTCTCAATGCAAACATCAAAGTATGATCTATTTCAACCAAAAATAAAAAAAAAGTACAATATAAA
CTCATTCATAAGATTATAAAACCATTTAAAATGAGTAACTAGACTTTCTCAAGCAAGAGTGACTA
TAAATGGACTTTTATTGTCAATAGGTGGCTTTTGCTTCAAGTTTCCCAATGTGAACATCCAATGA
TGGTCTGTTTTGATCAAAAATGAAAATAATTTATAAGACTA
Found at i:22463969 original size:171 final size:171
Alignment explanation
Indices: 22463683--22465404 Score: 1462
Period size: 171 Copynumber: 10.1 Consensus size: 171
22463673 TATAAGACTA
* * * *
22463683 AAAACCCATTTAAAGTGAGTGACTAGGCGTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCT
1 AAAA-CCACTTAAAGCGAGTAACAAGGC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * ** * * * *
22463747 TGTCAATTGATGGCTTTCGTTTCACGTTTCCCGATGTGAACATTCAATTATGATTTGTTGTAAGC
64 TGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACC
**
22463812 AAAAATGAAAAACGATTCAATTTAAAATCATTTATAAAGTTAT
129 AAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * *
22463855 AAAACCACTTAAAGCAAGTAATAAGACTTTCGAAGCCATGAGTGACTATAAATGGACTTTTCTTG
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * **
22463920 TCAATGGATGGCTTTTGCTTCATGTTTCTCAATGTAAACATCAAATTATGATCTATTTTATTCAA
66 TCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACCAA
* * * * * * * *
22463985 AAGTAAAAAAAAAGTACAATATGAACTTATTCAT-AAGATTAT
131 AAATGAAAAAAAA-TTCAATTTAAAATCATTTATAAAG-TTAT
* ** * * * * * * * *
22464027 AAAACCATTTAAAATGAGTAACTAGACTTTCTCAA-GCAAGAGTGACTGTAAGTGGTCTTTTATT
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTC-GAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * * ** * *
22464091 GTCAGTGGATAGCATTAGCTTC-TCGTTTCAT-GATGCAAATATCCAATTACAATCTGGTTTAAC
65 GTCAATGGATGGCTTTCGCTTCAT-GTTTC-TCAATGCAAACATCCAATGATGATTTGTTTTAAC
* * *
22464154 CCAAAATG-AAAAAAATTCAATTCAAAGTCATTTATAAAGTTAT
128 CAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * ** * *
22464197 AACACCACTTAAAGCGAGTAACAAGGCTTTCAAAACCATTAGTGA-TAATAAATAGG-CTTTTGT
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACT-ATAAAT-GGACTTTTCT
* * * * * * * * *
22464260 TGTCAATGGGTTGCTTTCACTACACGTTTCCCAATGCAAACATCCAATTATGATATGTTTAAACC
64 TGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACC
* *
22464325 AAAAAT-AAAAAAAACTTCAATTTAAAATCATTTAT-AAGACTAA
129 AAAAATGAAAAAAAA-TTCAATTTAAAATCATTTATAAAG-TTAT
* * * * * *
22464368 AAAATCATTTAAAGCAAGTAACTAGGCTTTTGAAGGTATGAGTGACTATAAATGGACTTTTCTTG
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * ** ** *
22464433 TTAATGGATGGCTTTTGCTTTACATTTCTCAATAAAAACATCCAATGATGATGTGTTTTAAGCC-
66 TCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAA-CCA
* * *
22464497 AAAATG-AACAAAATTCAATTTAAAATCATTTATAAAATGAT
130 AAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * ** * * *
22464538 AAAACCACTTAAAGC-ATGTAACAAGGCATTCAAAGGTAAAAGTCACTATCAATGAACTTTTCTT
1 AAAACCACTTAAAGCGA-GTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * ** * * *
22464602 ATCAAAT-GACGGCTTACGCTTCATGTTTCTTGATGCGAACATCCAATGATGATTTGTTATAAGC
65 GTC-AATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACC
*
22464666 AAAAATGAAAAAAAAATCAATTTAAAATCATTTATAAAGTTAT
129 AAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * * *
22464709 AAAACCACTTAAAGTGACTAACAAGGCTTTTGAAGCCATCAGTGAATATAAATGGACTTTTTTTG
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* ** * * * *
22464774 TCAATGTATTACTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATCTATTTTCACCAT
66 TCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACCAA
* * *
22464839 AAATGAAAAAAAATTCAACTTACAATCATTTATAATGTTAT
131 AAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * * * * *
22464880 AAAACCAGTTAAAGCAAGTAATAGGGCATTCAAAGGCATGAGTGACTATAAATAGATTTTTCTTT
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
*** * * * * * *** *
22464945 TCAATGGACAACTCTCG-TTAAATGTTTC-CTAATGTAAACATCAAATTATGATAAATTTTAAAC
66 TCAATGGATGGCTTTCGCTT-CATGTTTCTC-AATGCAAACATCCAATGATGATTTGTTTTAACC
* * *
22465008 AAAAATGAAAAAAAATTCAATTTAAAGTCATTTAT-AAGATAAC
129 AAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAG-TTAT
* * * * *
22465051 AAAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATTAGT-AATCAT-AATGGA-TTTGTTT
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACT-ATAAATGGACTTT-TCT
* * ** *
22465113 TGTCAATGGATAGACTTT-GCTTCATGTTTCCCAATGTGAACATCCAATGATG-TTCTGTTTTCA
64 TGTCAATGGAT-GGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATT-TGTTTTAA
22465176 CCAAAAAT--AAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
127 CCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* *** *
22465219 AAAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGGATGAGTGACTATAAATGGACTTTTCTTG
1 AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
** * ** * ** *
22465284 TCAAAAGATGACTTTCGCTTCACATTTCTCGATGGGAACATCCAATGATGATTTGTTTTAAGCAA
66 TCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACCAA
*
22465349 AAA--AAAAAAAATTCAATTTAAAATAATTTATAAAGTTAT
131 AAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
22465388 AAAACCACTTAAAGCGA
1 AAAACCACTTAAAGCGA
22465405 TGAGTGAACA
Statistics
Matches: 1227, Mismatches: 281, Indels: 87
0.77 0.18 0.05
Matches are distributed among these distances:
168 71 0.06
169 123 0.10
170 315 0.26
171 591 0.48
172 124 0.10
173 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATTTGTTTTAACCAA
AAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
Found at i:22464528 original size:341 final size:337
Alignment explanation
Indices: 22463664--22470487 Score: 2104
Period size: 341 Copynumber: 20.1 Consensus size: 337
22463654 ATCAAAAATG
* * * *
22463664 AAAATAATTTATAAGACTAAAAACCCATTTAAAGTGAGTGACTAGGCGTTTGAAGGCATGAGTGA
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
* * * ** *
22463729 CTATAAATGGACTTTTCTTGTCAATTGATGGCTTTCG-TTTCACGTTTCCCGATGTGAACATTCA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTT-ACGTTTCTCAATGCAAACATCCA
* * * * *
22463793 ATTATGATTTGTTGTAAGCAAAAATGAAAAACGATTCAATTTAAAATCATTTATAAAGTTATAAA
130 ATGATGATCTGTTTTAA-CCAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAA
* * * *
22463858 ACCACTTAAAGCAAGTAATAAGACTTTCGAAGCCATGAGTGACTATAAATGGACTTTTCTTGTCA
193 ACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGTCA
* * * * **
22463923 ATGGATGGCTTTTGCTTCATGTTTCTCAATGTAAACATCAAATTATGATCTAT-TTTATTCAAAA
257 ATGGAT-GCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGA--TATGTTTAAACAAAA
* * * *
22463987 GTAAAAAAAAAGTACAATAT
319 ATGAAAAAAAA-TTCAATTT
* * * * * * * * * *
22464007 GAACTTATTCATAAGATTATAAAACCATTTAAAATGAGTAACTAGACTTTCTCAA-GCAAGAGTG
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTT-TGAAGGCATGAGTG
* * * * * * * * * *
22464071 ACTGTAAGTGGTCTTTTATTGTCAGTGGATAGCATTAGCTTCT-CGTTTCAT-GATGCAAATATC
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-TACGTTTC-TCAATGCAAACATC
* ** * * *
22464134 CAATTACAATCTGGTTTAACCCAAAATGAAAAAAATTCAATTCAAAGTCATTTATAAAGTTATAA
128 CAATGATGATCTGTTTTAA-CCAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAA
* * * * * * *
22464199 CACCACTTAAAGCGAGTAACAAGGCTTTCAAAACCATTAGTGA-TAATAAATAGGCTTTTGTTGT
192 AACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACT-ATAAAT-GACTTTTCTTGT
* * * *
22464263 CAATGGGTTGCTTTCACTACACGTTTCCCAATGCAAACATCCAATTATGATATGTTTAAACCAAA
255 CAAT-GGATGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATGTTTAAA-CAAA
22464328 AAT-AAAAAAAACTTCAATTT
318 AATGAAAAAAAA-TTCAATTT
* ** *
22464348 AAAATCATTTATAAGACTAAAAAATCATTTAAAGCAAGTAACTAGGCTTTTGAAGGTATGAGTGA
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
* * * **
22464413 CTATAAATGGACTTTTCTTGTTAATGGATGGCTTTTGCTTTACATTTCTCAATAAAAACATCCAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCAA
* * * *
22464478 TGATGATGTGTTTTAAGCCAAAATGAACAAAATTCAATTTAAAATCATTTATAAAATGATAAAAC
131 TGATGATCTGTTTTAA-CCAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAAC
* ** ** * * *
22464543 CACTTAAAGCATGTAACAAGGCATTCAAAGGTAAAAGTCACTATCAATGAACTTTTCTTATCAAA
195 CACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAATG-ACTTTTCTTGTC-AA
* * * *** * * * * *
22464608 T-GACGGCTTACGCTTCATGTTTCTTGATGCGAACATCCAATGATGATTTGTTATAAGCAAAAAT
258 TGGA-TGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATGTT-TAAACAAAAAT
*
22464672 GAAAAAAAAATCAATTT
321 GAAAAAAAATTCAATTT
* * * * * * *
22464689 AAAATCATTTATAA-AGTTATAAAACCACTTAAAGTGACTAACAAGGCTTTTGAAGCCATCAGTG
1 AAAATCATTTATAAGA-CTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * ** * *
22464753 AATATAAATGGACTTTTTTTGTCAATGTATTACTTTCGCTTCATGTTTCTCAATGCAAACATCCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCA
* * * * *
22464818 ATGATGATCTATTTTCACCATAAATGAAAAAAAATTCAACTTACAATCATTTATAATGTTATAAA
130 ATGATGATCTGTTTTAACCA-AAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAA
* * * * * *
22464883 ACCAGTTAAAGCAAGTAATAGGGCATTCAAAGGCATGAGTGACTATAAATAGATTTTTCTTTTCA
193 ACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGTCA
** * * * * *
22464948 ATGGACAACTCTCGTTAAATGTTTCCTAATGTAAACATCAAATTATGATAAAT-TTTAAACAAAA
257 ATGGA-TGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGAT--ATGTTTAAACAAAA
22465012 ATGAAAAAAAATTCAATTT
319 ATGAAAAAAAATTCAATTT
* * * * * *
22465031 AAAGTCATTTATAAGA-TAACAAAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATTAGT-
1 AAAATCATTTATAAGACTAA-AAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * * **
22465094 AATCAT-AATGGA-TTTGTTTTGTCAATGGATAGACTTT-GCTTCATGTTTCCCAATGTGAACAT
65 ACT-ATAAATGGACTTT-TCTTGTCAATGGAT-GGCTTTCGCTTTACGTTTCTCAATGCAAACAT
* *
22465156 CCAATGATGTTCTGTTTTCACCAAAAAT-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATA
127 CCAATGATGATCTGTTTTAACC-AAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATA
** ** * **
22465220 AAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGGATGAGTGACTATAAATGGACTTTTCTTGT
191 AAACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGT
** * ** * * ** * * * *
22465285 CAAAAGATGACTTTCGCTTCACATTTCTCGATGGGAACATCCAATGATGATTTGTTTTAAGCAAA
255 CAATGGATG-CTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATG-TTTAAACAAA
22465350 AA--AAAAAAAATTCAATTT
318 AATGAAAAAAAATTCAATTT
* * * *
22465368 AAAATAATTTATAA-AGTTATAAAACCACTTAAAGCGATGAGTGAACATAAATGGACTTTT----
1 AAAATCATTTATAAGA-CTAAAAAACCATTTAAA--G-TGAGT-AAC-T--A-GG-CTTTTGAAG
* * ** * * ** ** ** ** *
22465428 -C-T---TGTCAATGGATTG-CTTTCCTT-TC-ATGTTTCTCAAT-GC-AAAC--ATC-CAATG-
56 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGC
** * ** * * **** * ** * * *
22465479 -ATGAT-CTATTTTTACCAAAAATGAA--AAAAAAAAATAGCTTAAAATC-ATTTATAAT-GTTA
121 AAACATCCAATGATGATC-TGTTTTAACCAAAATGAAA-A----AAATTCAATTTAAAATCATT-
* * ** * * * **
22465538 TAAAACCACTTAGAGTAATAGGGCA-TTCAAAGGCATGGTGACTTTAAATGGACTTTTC-TTGCC
179 TATAA--AGTT--A-TAA-A-ACCACTT-AAA-GCA-AGTAAC----AA-GG-C-ATTCAAAGCC
* * * * * * ** *
22465601 AATGAATGACTTTTGCAA-CACATTTCCCAATG-CAA-ACAT-CAAATTAT-GAT-CTAT-TTTA
227 -ATGAGTGAC-TAT-AAATGAC-TTT-TC-TTGTCAATGGATGC---TT-TCGCTAC-ATGTTT-
* * * *
22465659 ACCAAAAATG-AAA-A--AAATTCAT-CTAT-TTTAACCAAAAATG-AAAAAAATTCAATTC
280 -CC--CAATGCAAACATCAAATT-ATGATATGTTTAAACAAAAATGAAAAAAAATTCAATTT
* * * * * **
22465714 AAAGTTATATATAAGA-TAATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATTTGT-
1 AAAATCATTTATAAGACTAA-AAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * * * **
22465777 AGTTATAAATGG-CTTTTTTTGTCAATGGATAGAC-TTCGCTTCATGTTCCCCAATGTGAACATC
65 A-CTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTTACGTTTCTCAATGCAAACATC
* *
22465840 CAATGAT-ATTTTGTTTTAACCAAAAATAAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTA
128 CAATGATGA-TCTGTTTTAACC-AAAAT--GAAAAAAATTCAATTTAAAATCATTTATAAAGTTA
* ** * *
22465904 TAAAACCACTTAAAGCGAGTAACAAGAAATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
189 TAAAACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTT
** * * ** * * * * * *
22465969 GTCAAAAGATGAATTTCGCTTCACATTTCTCAATGCGAACATCCAATGATTATTTGTTTTAAGA-
253 GTCAATGGATG-CTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATG-TTTAA-AC
*
22466033 AAAAATGAAAAAAAAATCAATTT
315 AAAAATGAAAAAAAATTCAATTT
* * * * ***
22466056 AAAATAATTTATAA-AGTTATAAAACCACTTAAAGCAATGAGTGAACATAAATGGACTTTTCTTG
1 AAAATCATTTATAAGA-CTAAAAAACCATTTAAAG---TGAGT-AAC-T--A-GG-CTTTTGAAG
* * * *** ** * * ** * *** * * *
22466120 TCAATGGATTG-CTTTCCTTTCA-TGTTTC---TCAACGCA-AAC-ATCAAATGATG-ATCT-AA
56 GC-AT-GAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAA
* ** * ** * * * ** * * *
22466176 TTTTGCCAA-A---AATGAAAAAC-AATTTAGCTTAAAATCATTTATAATGT---TATAAAACCA
118 ---TGCAAACATCCAATGATGATCTGTTTTAAC-CAAAATGA-AAAAAAT-TCAATTTAAAATCA
* * ** * * * ** * * ** *** *
22466233 -CT-TAAAGTGAGTAACAGGGCATTTTAAG-ACA-TGA-GTGAC-TTTAAATGGACTTTTCTTGC
177 TTTATAAAGTTA-TAA-A-ACCACTTAAAGCA-AGTAACAAGGCATTCAAA--G-CCATGAGTGA
* * * * ** * *
22466292 CAATAGATGAC--TT-TTGT-AA--CA--CATTTC-CCA-ATG---CAAACAT-C-AA-ATTATG
235 CTATAAATGACTTTTCTTGTCAATGGATGC-TTTCGCTACATGTTTCCCA-ATGCAAACATCA-A
* **** * * **
22466341 ATCTAT--TTTAACCAAA-AATGAA--AAAAAATATTCAATAC
297 AT-TATGATATGTTTAAACAA-AAATGAAAAAAAATTCAATTT
* ** * ** * *
22466379 AAAGTCATTTATAAGA-TAATAAAACCATTTACTGTGAGTAACAAGGCTTTCAAAGGCATCAATG
1 AAAATCATTTATAAGACTAA-AAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * *
22466443 ACTATAAATGGA-TTTT-TTTTCCAATGGATGGCTTTTGCTTCATGTTTCTCGATGCGAACATCC
65 ACTATAAATGGACTTTTCTTGT-CAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCC
* * * * *
22466506 AATGATTATCTATTTTAACCAAAAATGAAGAAAA-TAAATTTAAAATCACTTATAAAGTTATAAA
129 AATGATGATCTGTTTTAACC-AAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAA
* ** * * *
22466570 ATCACTTAAAGTGAGT-ACAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTATCTTGTCA
193 ACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGTC-
* * * * * ** ** *
22466634 AAGGACGAGAGC-GTCGCGAC--G-GT--CGGTGGTAACA-C---TCATGCATA----TAAACAA
256 AATG--GA-TGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATG-ATATGTTTAAACAA
* * ** *
22466685 ATTCAATTTAAAATTATTTATAAAGTTAT
317 A---AA-TGAAAA-AAAAT-TCAA-TT-T
* * * * * * * * * * **
22466714 AAAACCACTTAAAGAGAGTAACAAAGC-TTTCGAAGACATGAATGATTA--CAAATTG-A--C-T
1 AAAATCATTTATA-AGACTAAAAAACCATTT--AA-A-GTGAGTAACTAGGC-TTTTGAAGGCAT
** * * * * ** ** * ** * **
22466772 ---TTTCTTGTCAATGGA--TTACTT-ACGTTTCAT-G-TTTCTCAATATG-AACATCCAATG--
60 GAGTGAC-TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTC-T-CAATGCA
** * ** * * * * ** * * ** * * * * * *
22466826 ATGAT-CTATTTTCACCAG---AAATGAAAA-GAAATTCAACTT-AAAAT-CATTTA-TAATGAG
122 AACATCCAATGATGATCTGTTTTAACCAAAATGAAA--AAAATTCAATTTAAAATCATTTATAAA
* * * ** * * * * * **
22466883 GTTATAGAACCATTTCAAGTGAGTAATAGGGCTTTCGAAGGCATGAGTGACTGCAAATGGACTTT
185 GTTATAAAACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTT
** * *
22466948 TC-TAACGAATGGATGACTTTC-ATAACATGTTTTCCCAATNCAAACATCAAATTATGATCTAT-
249 TCTTGTC-AATGGATG-CTTTCGCT-ACATG-TTTCCCAATGCAAACATCAAATTATGA--TATG
* * *
22467010 TTTAACCAAAAAT-AAAAAAGTATT-GATTT
308 TTTAAACAAAAATGAAAAAA-AATTCAATTT
* * ** * **
22467039 AAAATAATTTATAAGACTATAAAACCATTTAAAGCAAGTAACTATGCTTCCGAAGGCATGAGTGA
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
* ***
22467104 CTATAAATAGG-CTTTTCTTGTTAATGGATGGCTTTCG-TTTCACGGTTT-T-AGATTTGAACAT
66 CTATAAAT-GGACTTTTCTTGTCAATGGATGGCTTTCGCTTT-AC-GTTTCTCA-ATGCAAACAT
* * ** * *
22467165 CCAATGATGATCTGTTTTCACTACAAATGAAAAACAATTCAACGTAATATCATTTATAATGTTAT
127 CCAATGATGATCTGTTTTAACCA-AAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTAT
** *
22467230 AAAACCACTTAAAGCGAA-TAACAAGGCATTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
190 AAAACCACTTAAAGC-AAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTT
* ** * * * *
22467294 GTCAAAGGATGGCTTTCGCTTGATGTTT-CCAGATGCAAATATCAAATTCTAATATGTTTCAACC
253 GTCAATGGAT-GCTTTCGCTACATGTTTCCCA-ATGCAAACATCAAATTATGATATGTTT-AAAC
* * *
22467358 AAAAATGGAAAAGAAGTACAATTT
315 AAAAAT-GAAAAAAAATTCAATTT
* * * * * * * *
22467382 AAACTTATTCATAAGATTATAAAATCATTTAAAATGAGTAACTAGGCTTTCGAAGGCATGAGTGA
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
** * * * * * * * *
22467447 CTATAAATAAACTTTTCTTGTCAATGGATAGCATTCACTTAATGTTTCCCAATACAAATATCCAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCAA
* * ** ** * * * * *
22467512 TAACGATCCATTTTAAGCTTAAATGAAAAAAAATTTAGTTTGAAATCATTTATAAAATCATAAAA
131 TGATGATCTGTTTTAA-CCAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAA
* * * * * * * *
22467577 CCATTTAAAATG-AA-AAATAAGGCTTTCGAAGCCTTAAGTGGCTATAAATGGACTTTTCTTGTC
194 CCACTT-AAA-GCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGTC
* * * * * * *
22467640 AATGGGTGACTTTCGTTACATGTTTCCCAATGCGAACATTC-GATTATGATCTATTTTAACTAAA
256 AATGGATG-CTTTCGCTACATGTTTCCCAATGCAAACA-TCAAATTATGATATGTTTAAAC-AAA
*
22467704 AATGAAAAAAAATT-GATTT
318 AATGAAAAAAAATTCAATTT
* * * * ** * *
22467723 AAAATAATTTATAAGACTATAAAGCCGTTTAAAGCCAGTAACTAGGCTTTCGAAGCCATGAGTGA
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
* * ** * * * *
22467788 CTATAAACGGACTTTTCTTGTCCATAGG-TGGCTTTCGCTACACCTCTCTCAATGTAAACATCTA
66 CTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCA
* * * ** *
22467852 ATTATGATCTATTTTATCTGTAAATGAAAAAAAAAATT-AATTTAAAATCATTTATAGTA-TTAT
130 ATGATGATCTGTTTTAAC-CAAAATG---AAAAAAATTCAATTTAAAATCATTTATA-AAGTTAT
* * * * * ** * *
22467915 AAAATCACTTAATATG--ACTAATAAGGCTTTCGAAGGTATGAGTTACTACAAATGGACTTTTCT
190 AAAACCACTTAA-A-GCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCT
* **
22467978 TGTCAATGGATAGCATTT-GCTTCACAT-TTT-CCAATGCAAATATCAAATTATGATCCGTTTCA
252 TGTCAATGGAT-GC-TTTCGC-T-ACATGTTTCCCAATGCAAACATCAAATTATGATATGTTT-A
* * * * *
22468040 AGCATAAACG-AAAAACATTCAAATT
312 AACAAAAATGAAAAAAAATTCAATTT
** * * * * *
22468065 AAAATCATTTATGAA-TTTATAAAGCCACTTAAAGCGAGTAA-TAAGGCTTTCGAA-GCTATGAG
1 AAAATCATTTAT-AAGACTAAAAAACCATTTAAAGTGAGTAACT-AGGCTTTTGAAGGC-ATGAG
* * * **
22468127 T-AGCTATAAATGGACTTTTCTTATCAATTGG-TGGGTTTCGCTATACGTTTCTCAATGTGAACA
63 TGA-CTATAAATGGACTTTTCTTGTCAA-TGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACA
* * * * *
22468190 TCCAATTATGATCTTTTTTAACCAAAAATGGAAAAAAAATACAATTTAAACTCATTCATAATA-T
126 TCCAATGATGATCTGTTTTAACC-AAAAT-G-AAAAAAATTCAATTTAAAATCATTTATAA-AGT
* * * * *
22468254 TATAAAAACA-TTAAAACAAGTCACTAA-GCTTTCAAAGGCATGAGTGACTATAAATAGACTTTT
187 TATAAAACCACTTAAAGCAAGTAAC-AAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTT
* * * ** * * * * *
22468317 CTTGTTAGTGGATAGCATTT-GCTTCACATTTCCTAATGTAAATATCCAATTACGAT-TCGTTTT
250 CTTGTCAATGGAT-GC-TTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATAT-G-TTT
* *
22468380 AAGC-AAAAT--AAAAAAATTTAATTT
311 AAACAAAAATGAAAAAAAATTCAATTT
** * * * * * * *
22468404 AAAATCATTTATAAGGTTAGAAAACCAATTAAAGCGAGTAACAAGGCTTTTGAAGCCAAGAGTGG
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
* * * * ** * * * * *
22468469 CGATAAATGGACTTTTCTTATCAATGGATGGGTTTTGCTACAC-ATTCCCTAAAGCGAACATCTA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTC-AATGCAAACATCCA
* * * * * * * *
22468533 ATTATAATATGTTTTATCCAAACATTAAAAAAAATT-GATTCAAAAT-AGTTTATAAGACTT-TA
130 ATGATGATCTGTTTTAACCAAA-A-TGAAAAAAATTCAATTTAAAATCA-TTTATAA-AGTTATA
* * * ** * *
22468595 AAACCATTTAAAG-AGTGTAAC--TGCACTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCT
191 AAACCACTTAAAGCA-AGTAACAAGGCA--TTCAAAGCCATGAGTGACTATAAAT-GACTTTTCT
* * ** * * * * * * * *
22468657 TGTCAATGGACAGCTTTCGCAACACATTCCCCACTACAAACTTCCAATTATGATCTGTTTTAACC
252 TGTCAATGGA-TGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATGTTTAAACA
*
22468722 AAAATGAAAAAAAA-TCAATCT
316 AAAATGAAAAAAAATTCAATTT
* * * * * *
22468743 AAAATCATTTATCAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAAGCATGAGTG
1 AAAATCATTTAT-AAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * ** **
22468807 ACTATAAATGGACTTTTGTTGTCAATGGATGGCTTTTGCTTCATGTGTCTTGATGTGAACATCCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCA
* *
22468872 ATGACGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAA
130 ATGATGATCTGTTTTAACC-AAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAA
* * * * * * *
22468937 ACCACTTAAAGCGAGTAACAAAGCAATAAAAGGCATGAGTGACAATAAATGGACTTTTCTTGACA
193 ACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGTCA
* * *
22469002 ATGGATAGCGTTCGCTTCATGTTTCCCAATGCAAACATCAAATTATGATATGTTTTAATCAAAAA
257 ATGGAT-GCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATG-TTTAAACAAAAA
*
22469067 TGAAAAAAAAAAGTACAATTT
320 TG--AAAAAAAA-TTCAATTT
* * * * * *
22469088 AAACTCATTCATAAGACTACAAAACCATTTGGAA-TGAGTAACTATGCTTTTGAATGCATGAGTG
1 AAAATCATTTATAAGACTAAAAAACCATTT-AAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * * * ** *
22469152 ACTATAAATGGAATTTTCTTGTGAATGAATAGCATTT-GCTTCACTTTTTTTGATGCAAATATCC
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTTACGTTTCTCAATGCAAACATCC
* * * ** * *
22469216 AATTACGATCCGTTTTAAGTAAAAATGAAAAACAAATTCACTTTATAATCATTTATAAAGTTATA
129 AATGATGATCTGTTTTAA-CCAAAATG-AAAA-AAATTCAATTTAAAATCATTTATAAAGTTATA
** * * * * *
22469281 AAACCACTTAAAGTGAGTAACAAGGCTTTCAAATCCATGACTGAATATAAATAGACATTTCTTGT
191 AAACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGT
* * * * * ** * * * * * *
22469346 CAATGGATTACTTTTGCTTCATATTTCTCAATGTGAACATCCAATGATAATCTATG-TTCATCAT
255 CAATGGA-TGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGA--TATGTTTAAACAA
*
22469410 AAATGAAAAAAAA-TCAACTT
317 AAATGAAAAAAAATTCAATTT
* * * * * * * * ** *
22469430 AAAATCATTTATAATG--TTATAAACCACTTACAGTGAGCAACAAGACATTCCAAGGAATGAGTG
1 AAAATCATTTATAA-GACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * ** *
22469493 ATTATAAATGGA-TTTT-TTTTCAATGGATGGCTTTCGCTTCACGTTTCTTGATGCGAACATCCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCA
** *
22469556 ATGATGATCTGTTTTAATGAAAAATGAAAAAAATTCAATTTGAAATCATTTATAAAGTTATAAAA
130 ATGATGATCTGTTTTAA-CCAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAA
* * * * * *
22469621 CAACTTAAAGCAAGTAACAAAGCATTCGAAGGCATGAGCGACTATAAATGGACCTTTCTTGTCAA
194 CCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGTC-A
* * ** * * * * * *
22469686 AT-GACGGTTTTCATTTCATGTTTCCCAATGCAAACATCAAGTTATAATCTATTTTAACTAAAAA
257 ATGGA-TGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATGTTTAAAC-AAAAA
* * *
22469750 TGAAAACGAAGTAT-AGTTT
320 TGAAAA-AAAAT-TCAATTT
* * * * * * * ** *
22469769 AAACTCATTCATAAGATTACAGAACCATTTATAA-CGAGTAACTAGACTTTCAAAGGAATGAGTG
1 AAAATCATTTATAAGACTAAAAAACCATTTA-AAGTGAGTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * *
22469833 ACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCACTTCACGTTT-TCTGATGCAAATATCC
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTC-AATGCAAACATCC
* * ** * * * *
22469897 AATTACGATCCATTTTAAGCTAAAATGAAAAAAAAAAT-AGTTTGAAATCATTTATAAAGTTATA
129 AATGATGATCTGTTTTAA-CCAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATA
** * ** * *
22469961 AAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGCCGTAAGTGACTATAAATGGACTTTTCTTGT
191 AAACCACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAAT-GACTTTTCTTGT
* ** * * * *
22470026 CAATGGGTGGCTTTCATTACATGTTTCTCAATGCGAGTA-ATC-GATTATGATATGTTTTAACCA
255 CAATGGAT-GCTTTCGCTACATGTTTCCCAATGC-A-AACATCAAATTATGATATG-TTTAAACA
* **
22470089 AAAATG-AAAAAATTTTGATTT
316 AAAATGAAAAAAAATTCAATTT
* * * * * * * * * * *
22470110 AAAATAATTTATAGGACTATAAAATCATTTAAAGCGAGTAACTCGACTTTCGAAGCCATGAGCGG
1 AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
* * ** * ***
22470175 CTATAAATGGACTTTTCTTGTCCATAGG-TGGCTTTTGCTACACCTTTCTCAAAATAAACATCCA
66 CTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCA
* ** *
22470239 ATTACAATCTATTTTATA-CAGAAATGGAAACAAAATT-AATTTAAAATCATTTAT-AAGATTAT
130 ATGATGATCTGTTTTA-ACCA-AAAT-GAAA-AAAATTCAATTTAAAATCATTTATAAAG-TTAT
* * * * * * * *
22470301 AAAATCATTTAATGCAACTAACAAGCCTTTCGAAAGCC-TAAGTGACTATAAATGGACTTTTTTT
190 AAAACCACTTAAAGCAAGTAACAAGGCATTC-AAAGCCATGAGTGACTATAAAT-GACTTTTCTT
* * * * ** * * *
22470365 ATTAATGGATGGCTTTCACTTCACATTTCCCAATGCGAACATCAAATTATGATCTGTTTCAACCA
253 GTCAATGGAT-GCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATGTTT-AAACA
*
22470430 AAAATGAAGAAAAAAAAATACAATTT
316 AAAAT---G-AAAAAAAATTCAATTT
* * * *
22470456 AAACTCATTTATAAGATTATAAAACCACTTAA
1 AAAATCATTTATAAGACTAAAAAACCATTTAA
22470488 TCTTATAAGA
Statistics
Matches: 4772, Mismatches: 1270, Indels: 875
0.69 0.18 0.13
Matches are distributed among these distances:
312 6 0.00
313 8 0.00
314 7 0.00
315 7 0.00
316 7 0.00
317 6 0.00
318 5 0.00
319 16 0.00
320 32 0.01
321 61 0.01
322 57 0.01
323 57 0.01
324 15 0.00
325 27 0.01
326 27 0.01
327 17 0.00
328 27 0.01
329 23 0.00
330 34 0.01
331 28 0.01
332 23 0.00
333 14 0.00
334 18 0.00
335 34 0.01
336 22 0.00
337 220 0.05
338 150 0.03
339 511 0.11
340 254 0.05
341 1049 0.22
342 846 0.18
343 530 0.11
344 71 0.01
345 156 0.03
346 245 0.05
347 26 0.01
348 33 0.01
349 18 0.00
350 14 0.00
351 12 0.00
352 8 0.00
353 9 0.00
354 3 0.00
355 12 0.00
356 16 0.00
357 2 0.00
358 4 0.00
359 1 0.00
360 4 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (337 bp):
AAAATCATTTATAAGACTAAAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGA
CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCTCAATGCAAACATCCAA
TGATGATCTGTTTTAACCAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACC
ACTTAAAGCAAGTAACAAGGCATTCAAAGCCATGAGTGACTATAAATGACTTTTCTTGTCAATGG
ATGCTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATATGTTTAAACAAAAATGAAAA
AAAATTCAATTT
Done.