Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 59 of 93
Found at i:22465683 original size:30 final size:30
Alignment explanation
Indices: 22465649--22465709 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
22465639 TCAAATTATG
22465649 ATCTATTTTAACCAAAAATGAAAAAAATTC
1 ATCTATTTTAACCAAAAATGAAAAAAATTC
22465679 ATCTATTTTAACCAAAAATGAAAAAAATTC
1 ATCTATTTTAACCAAAAATGAAAAAAATTC
22465709 A
1 A
22465710 ATTCAAAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.30
Consensus pattern (30 bp):
ATCTATTTTAACCAAAAATGAAAAAAATTC
Found at i:22465997 original size:686 final size:678
Alignment explanation
Indices: 22464999--22466635 Score: 2348
Period size: 686 Copynumber: 2.4 Consensus size: 678
22464989 ATTATGATAA
* * *
22464999 ATTTTAAACAAAAATGAAAAAAAATTCAATTTAAAGTCATTTATAAGATAACAAAACTATTTAAA
1 ATTTT-AACAAAAATG-AAAAAAATTCAATTCAAAGTCATTTATAAGATAATAAAACCATTTAAA
* * *
22465064 GCGAGTAACAAGGCTTTCGAAGGCATTAGTAATCAT-AATGGATTTGTTTTGTCAATGGATAGAC
64 GTGAGTAACAAGGCTTTCGAAGGCATTTGT-ATTATAAATGGATTT-TTTTGTCAATGGATAGAC
*
22465128 TTTGCTTCATGTTTCCCAATGTGAACATCCAATGATGTTCTGTTTTCACCAAAAATAAAAAAATT
127 TTTGCTTCATGTTTCCCAATGTGAACATCCAATGAT-TTCTGTTTTAACCAAAAATAAAAAAATT
*
22465193 CAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGGAT
191 CAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGCAT
* * *
22465258 GAGTGACTATAAATGGACTTTTCTTGTCAAAAGATGACTTTCGCTTCACATTTCTCGATGGGAAC
256 GAGTGACTATAAATGGACTTTTCTTGTCAAAAGATGAATTTCGCTTCACATTTCTCAATGCGAAC
* *
22465323 ATCCAATGATGATTTGTTTTAAGCAAAAA-AAAAAAAATTCAATTTAAAATAATTTATAAAGTTA
321 ATCCAATGATGATTTGTTTTAAGAAAAAAGAAAAAAAAATCAATTTAAAATAATTTATAAAGTTA
*
22465387 TAAAACCACTTAAAGCGATGAGTGAACATAAATGGACTTTTCTTGTCAATGGATTGCTTTCCTTT
386 TAAAACCACTTAAAGCAATGAGTGAACATAAATGGACTTTTCTTGTCAATGGATTGCTTTCCTTT
* * *
22465452 CATGTTTCTCAATGCAAACATCCAATGATGATCTATTTTTACCAAAAATGAAAAAAAAAAATAGC
451 CATGTTTCTCAACGCAAACATCAAATGATGATCTAATTTTACCAAAAATG-AAAAAAAAAATAGC
* *
22465517 TTAAAATCATTTATAATGTTATAAAACCACTT-A-GAGTAATAGGGCATTCAAAGGCATG-GTGA
515 TTAAAATCATTTATAATGTTATAAAACCACTTAAGGAGTAACAGGGCATTCAAAGACATGAGTGA
22465579 CTTTAAATGGACTTTTCTTGCCAAT-GAATGACTTTTGCAACACATTTCCCAATGCAAACATCAA
580 CTTTAAATGGACTTTTCTTGCCAATAG-ATGACTTTTGCAACACATTTCCCAATGCAAACATCAA
22465643 ATTATGATCTATTTTAACCAAAAATGAAAAAAATTCATCT
644 ATTATGATCTATTTTAACCAAAAATGAAAAAAA---A--T
* *
22465683 ATTTTAACCAAAAATGAAAAAAATTCAATTCAAAGTTATATATAAGATAATAAAACCATTTAAAG
1 ATTTTAA-CAAAAATGAAAAAAATTCAATTCAAAGTCATTTATAAGATAATAAAACCATTTAAAG
*
22465748 TGAGTAACAAGGCTTTCGAAGGCATTTGTAGTTATAAATGGCTTTTTTTGTCAATGGATAGACTT
65 TGAGTAACAAGGCTTTCGAAGGCATTTGTA-TTATAAATGGATTTTTTTGTCAATGGATAGACTT
* * *
22465813 CGCTTCATGTTCCCCAATGTGAACATCCAATGATATTTTGTTTTAACCAAAAATAAAAAAAAAAT
129 TGCTTCATGTTTCCCAATGTGAACATCCAATGAT-TTCTGTTTTAACCAAAAAT---AAAAAAAT
*
22465878 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGAAATTCGAAGGCA
190 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGCA
22465943 TGAGTGACTATAAATGGACTTTTCTTGTCAAAAGATGAATTTCGCTTCACATTTCTCAATGCGAA
255 TGAGTGACTATAAATGGACTTTTCTTGTCAAAAGATGAATTTCGCTTCACATTTCTCAATGCGAA
*
22466008 CATCCAATGATTATTTGTTTTAAGAAAAAATGAAAAAAAAATCAATTTAAAATAATTTATAAAGT
320 CATCCAATGATGATTTGTTTTAAGAAAAAA-GAAAAAAAAATCAATTTAAAATAATTTATAAAGT
22466073 TATAAAACCACTTAAAGCAATGAGTGAACATAAATGGACTTTTCTTGTCAATGGATTGCTTTCCT
384 TATAAAACCACTTAAAGCAATGAGTGAACATAAATGGACTTTTCTTGTCAATGGATTGCTTTCCT
* * **
22466138 TTCATGTTTCTCAACGCAAACATCAAATGATGATCTAATTTTGCCAAAAATGAAAAACAATTTAG
449 TTCATGTTTCTCAACGCAAACATCAAATGATGATCTAATTTTACCAAAAATGAAAAAAAAAATAG
**
22466203 CTTAAAATCATTTATAATGTTATAAAACCACTTAAAGTGAGTAACAGGGCATTTTAAGACATGAG
514 CTTAAAATCATTTATAATGTTATAAAACCACTT-AAG-GAGTAACAGGGCATTCAAAGACATGAG
*
22466268 TGACTTTAAATGGACTTTTCTTGCCAATAGATGACTTTTGTAACACATTTCCCAATGCAAACATC
577 TGACTTTAAATGGACTTTTCTTGCCAATAGATGACTTTTGCAACACATTTCCCAATGCAAACATC
22466333 AAATTATGATCTATTTTAACCAAAAATGAAAAAAAAT
642 AAATTATGATCTATTTTAACCAAAAATGAAAAAAAAT
**
22466370 A--TT--C------------AA-T--A--CAAAGTCATTTATAAGATAATAAAACCATTTACTGT
1 ATTTTAACAAAAATGAAAAAAATTCAATTCAAAGTCATTTATAAGATAATAAAACCATTTAAAGT
* * * *
22466414 GAGTAACAAGGCTTTCAAAGGCATCAATG-ACTATAAATGGATTTTTTT-TCCAATGGAT-GGCT
66 GAGTAACAAGGCTTTCGAAGGCAT--TTGTATTATAAATGGATTTTTTTGT-CAATGGATAGAC-
* * * * *
22466476 TTTGCTTCATGTTTCTCGATGCGAACATCCAATGATTATCTATTTTAACCAAAAATGAAGAAAA-
127 TTTGCTTCATGTTTCCCAATGTGAACATCCAATGATT-TCTGTTTTAACCAAAAAT-AAAAAAAT
* * * **
22466540 TAAATTTAAAATCACTTATAAAGTTATAAAATCACTTAAAGTGAGT-ACAAGGCATTCGAAGGCA
190 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGCA
*
22466604 TGAGTGACTATAAATGGACTTATCTTGTCAAA
255 TGAGTGACTATAAATGGACTTTTCTTGTCAAA
22466636 GGACGAGAGC
Statistics
Matches: 874, Mismatches: 60, Indels: 61
0.88 0.06 0.06
Matches are distributed among these distances:
661 47 0.05
662 42 0.05
663 6 0.01
664 4 0.00
665 126 0.14
666 1 0.00
667 3 0.00
669 1 0.00
670 2 0.00
682 2 0.00
683 145 0.17
684 21 0.02
685 2 0.00
686 161 0.18
687 45 0.05
688 144 0.16
689 2 0.00
691 21 0.02
692 98 0.11
693 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.32
Consensus pattern (678 bp):
ATTTTAACAAAAATGAAAAAAATTCAATTCAAAGTCATTTATAAGATAATAAAACCATTTAAAGT
GAGTAACAAGGCTTTCGAAGGCATTTGTATTATAAATGGATTTTTTTGTCAATGGATAGACTTTG
CTTCATGTTTCCCAATGTGAACATCCAATGATTTCTGTTTTAACCAAAAATAAAAAAATTCAATT
TAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGAAATTCGAAGGCATGAGTG
ACTATAAATGGACTTTTCTTGTCAAAAGATGAATTTCGCTTCACATTTCTCAATGCGAACATCCA
ATGATGATTTGTTTTAAGAAAAAAGAAAAAAAAATCAATTTAAAATAATTTATAAAGTTATAAAA
CCACTTAAAGCAATGAGTGAACATAAATGGACTTTTCTTGTCAATGGATTGCTTTCCTTTCATGT
TTCTCAACGCAAACATCAAATGATGATCTAATTTTACCAAAAATGAAAAAAAAAATAGCTTAAAA
TCATTTATAATGTTATAAAACCACTTAAGGAGTAACAGGGCATTCAAAGACATGAGTGACTTTAA
ATGGACTTTTCTTGCCAATAGATGACTTTTGCAACACATTTCCCAATGCAAACATCAAATTATGA
TCTATTTTAACCAAAAATGAAAAAAAAT
Found at i:22466046 original size:171 final size:170
Alignment explanation
Indices: 22465684--22466090 Score: 473
Period size: 171 Copynumber: 2.4 Consensus size: 170
22465674 AATTCATCTA
* * * * * * *
22465684 TTTTAACCAAAAATG-AAAAAAATTCAATTCAAAGTTATATAT-AAGATAATAAAACCATTTAAA
1 TTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATAATTTATAAAG-TTATAAAACCACTTAAA
* *** ** * * **
22465747 GTGAGTAACAAGGCTTTCGAAGGCATTTGTAGTTATAAATGGCTTTTTTTGTCAATGGATAGACT
65 GCGAGTAACAAGAAATTCGAAGGCATGAGTAGCTATAAATGGCTTTTCTTGTCAAAAGATAGACT
** *
22465812 TCGCTTCATGTTCCCCAATGTGAACATCCAATGATATTTTG
130 TCGCTTCACATTCCCCAATGCGAACATCCAATGATATTTTG
* * *
22465853 TTTTAACCAAAAATAAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAA
1 TTTTAACAAAAAAT-GAAAAAAAATTCAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAA
22465918 GCGAGTAACAAGAAATTCGAAGGCATGAGT-GACTATAAATGGACTTTTCTTGTCAAAAGAT-GA
65 GCGAGTAACAAGAAATTCGAAGGCATGAGTAG-CTATAAATGG-CTTTTCTTGTCAAAAGATAG-
* * *
22465981 ATTTCGCTTCACATTTCTCAATGCGAACATCCAATGAT-TATTTG
127 ACTTCGCTTCACATTCCCCAATGCGAACATCCAATGATAT-TTTG
* *
22466025 TTTTAAGAAAAAATGAAAAAAAAATCAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAG
1 TTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAG
22466090 C
66 C
22466091 AATGAGTGAA
Statistics
Matches: 203, Mismatches: 28, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
169 14 0.07
170 1 0.00
171 122 0.60
172 66 0.33
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (170 bp):
TTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAG
CGAGTAACAAGAAATTCGAAGGCATGAGTAGCTATAAATGGCTTTTCTTGTCAAAAGATAGACTT
CGCTTCACATTCCCCAATGCGAACATCCAATGATATTTTG
Found at i:22467858 original size:170 final size:170
Alignment explanation
Indices: 22466683--22470487 Score: 2637
Period size: 171 Copynumber: 22.2 Consensus size: 170
22466673 GCATATAAAC
* * * *
22466683 AAATTCAATTTAAAATTATTTATAA-AGTTATAAAACCACTTAAAGAGAGTAACAAAGCTTTCGA
1 AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGA
* * * * * ** * * *
22466747 AGACATGAATGATTACAAATTGACTTTTCTTGTCAATGGATTACTTACGTTTCATGTTTCTCAAT
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAT
*** * * * * * *
22466812 ATGAACATCCAATGATGATCTATTTTCACCAGAAATGAAAAG
129 GCAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* * * * *
22466854 AAATTCAACTTAAAATCATTTATAATGAGGTTATAGAACCATTTCAAGTGAGTAA-TAGGGCTTT
1 AAATT-AATTTAAAATCATTTATAA-GA--TTATAAAACCACTTAAAGCGAGTAACTA-GGCTTT
** ** * * * *
22466918 CGAAGGCATGAGTGACTGCAAATGGACTTTTC-TAACGAATGGATGACTTTC-ATAACATGTTTT
61 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCT-TCACG-TTT
* * * * *
22466981 CCCAATNCAAACATCAAATTATGATCTATTTTAACCAAAAAT-AAAAA
123 CTCAATGCAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* * * * * * * *
22467028 AGTATTGATTTAAAATAATTTATAAGACTATAAAACCATTTAAAGCAAGTAACTATGCTTCCGAA
1 A-AATTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
* *
22467093 GGCATGAGTGACTATAAATAGG-CTTTTCTTGTTAATGGATGGCTTTCGTTTCACGGTTT-T-AG
65 GGCATGAGTGACTATAAAT-GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAC-GTTTCTCA-
*** * * *
22467155 ATTTGAACATCCAATGATGATCTGTTTTCACTACAAATGAAAAA
127 ATGCAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* ** * * *
22467199 CAATTCAACGTAATATCATTTATAATG-TTATAAAACCACTTAAAGCGAATAACAAGGCATTT-G
1 AAATT-AATTTAAAATCATTTATAA-GATTATAAAACCACTTAAAGCGAGTAACTAGGC-TTTCG
* * *
22467262 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAAGGATGGCTTTCGCTTGATGTTTC-CAG
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-
* * * * * * * *
22467326 ATGCAAATATCAAATTCTAATATGTTTCAACCAAAAATGGAAAAG
127 ATGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-GAAAAA
* * * * * * * **
22467371 AAGTACAATTTAAACTTATTCATAAGATTATAAAATCATTTAAAATGAGTAACTAGGCTTTCGAA
1 AAAT-TAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
** * * * * * * *
22467436 GGCATGAGTGACTATAAATAAACTTTTCTTGTCAATGGATAGCATTCACTTAATGTTTCCCAATA
65 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATG
* * * ** *
22467501 CAAATATCCAATAACGATCCATTTTAAGCT-TAAATGAAAAA
130 CAAACATCCAATTATGATCTGTTTTAA-CTAAAAATGAAAAA
* * * * * ** * *
22467542 AAATTTAGTTTGAAATCATTTATAAAATCATAAAACCATTTAAAATGA-AAAATAAGGCTTTCGA
1 AAA-TTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACT-AGGCTTTCGA
* * * * * * * *
22467606 AGCCTTAAGTGGCTATAAATGGACTTTTCTTGTCAATGGGTGACTTTCG-TTACATGTTTCCCAA
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCTCAA
* * * *
22467670 TGCGAACATTCGATTATGATCTATTTTAACTAAAAATGAAAAA
128 TGCAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* * * * ** *
22467713 AAATTGATTTAAAATAATTTATAAGACTATAAAGCCGTTTAAAGCCAGTAACTAGGCTTTCGAAG
1 AAATTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAG
* * * * * *
22467778 CCATGAGTGACTATAAACGGACTTTTCTTGTCCATAGG-TGGCTTTCGCTACACCTCTCTCAATG
66 GCATGAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCACGTTTCTCAATG
* * * * **
22467842 TAAACATCTAATTATGATCTATTTTATCTGTAAATGAAAAAAA
130 CAAACATCCAATTATGATCTGTTTTAACTAAAAATG--AAAAA
* * *
22467885 AAATTAATTTAAAATCATTTAT-AGTATTATAAAATCACTTAATA-TGACTAA-TAAGGCTTTCG
1 AAATTAATTTAAAATCATTTATAAG-ATTATAAAACCACTTAA-AGCGAGTAACT-AGGCTTTCG
* * * * *
22467947 AAGGTATGAGTTACTACAAATGGACTTTTCTTGTCAATGGATAGCATTT-GCTTCACATTT-TCC
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCT-C
* * * * * *
22468010 AATGCAAATATCAAATTATGATCCGTTTCAAGC-ATAAACG-AAAA
126 AATGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAATGAAAAA
* * * *
22468054 ACATTCAAATTAAAATCATTTATGAA-TTTATAAAGCCACTTAAAGCGAGTAA-TAAGGCTTTCG
1 AAATT-AATTTAAAATCATTTAT-AAGATTATAAAACCACTTAAAGCGAGTAACT-AGGCTTTCG
* *
22468117 AA-GCTATGAGT-AGCTATAAATGGACTTTTCTTATCAATTGG-TGGGTTTCGCTAT-ACGTTTC
63 AAGGC-ATGAGTGA-CTATAAATGGACTTTTCTTGTCAA-TGGATGGCTTTCGCT-TCACGTTTC
** * *
22468178 TCAATGTGAACATCCAATTATGATCTTTTTTAACCAAAAATGGAAAAA
124 TCAATGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-GAAAAA
* * * * * * * * * *
22468226 AAATACAATTTAAACTCATTCATAATATTATAAAAACA-TTAAAACAAGTCACTAAGCTTTCAAA
1 AAAT-TAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
* * * * *
22468290 GGCATGAGTGACTATAAATAGACTTTTCTTGTTAGTGGATAGCATTT-GCTTCACATTTC-CTAA
65 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCTC-AA
* * *
22468353 TGTAAATATCCAATTACGAT-TCGTTTTAAGC--AAAAT-AAAAA
128 TGCAAACATCCAATTATGATCT-GTTTTAA-CTAAAAATGAAAAA
* * * * * *
22468394 AATTTAATTTAAAATCATTTATAAGGTTAGAAAACCAATTAAAGCGAGTAACAAGGCTTTTGAAG
1 AAATTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAG
* * * * * * * * * * *
22468459 CCAAGAGTGGCGATAAATGGACTTTTCTTATCAATGGATGGGTTTTGCTACAC-ATTCCCTAAAG
66 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AATG
* * * * * * * *
22468523 CGAACATCTAATTATAATATGTTTTATCCAAACATTAAAAA
130 CAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* * * * * * *
22468564 AAATTGATTCAAAAT-AGTTTATAAGACTT-TAAAACCATTTAAAGAGTGTAACT-GCACTTTTG
1 AAATTAATTTAAAATCA-TTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACTAG-GCTTTCG
* ** ** * * * *
22468626 AAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGACAGCTTTCGCAACACATTCCCCAC
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
* * *
22468691 TACAAACTTCCAATTATGATCTGTTTTAAC-CAAAATGAAAAA
128 TGCAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* *
22468733 AAATCAATCTAAAATCATTTATCAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
1 AAATTAATTTAAAATCATTTAT-AAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
* * * * * **
22468797 AGCATGAGTGACTATAAATGGACTTTTGTTGTCAATGGATGGCTTTTGCTTCATGTGTCTTGATG
65 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATG
** * * * *
22468862 TGAACATCCAATGACGATCTATTTTAACCAAAAATGAAAAA
130 CAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* * ** **
22468903 AAATTCAATTTAAAATCATTTATAA-AGTTATAAAACCACTTAAAGCGAGTAACAAAGCAATAAA
1 AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGA
* * * * * *
22468967 AGGCATGAGTGACAATAAATGGACTTTTCTTGACAATGGATAGCGTTCGCTTCATGTTTCCCAAT
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAT
* *
22469032 GCAAACATCAAATTATGATATGTTTTAA-TCAAAAATGAAAAAAA
129 GCAAACATCCAATTATGATCTGTTTTAACT-AAAAATG--AAAAA
* * * * * * * * * *
22469076 AAAGTACAATTTAAACTCATTCATAAGACTACAAAACCATTTGGAA-TGAGTAACTATGCTTTTG
1 AAA-T-TAATTTAAAATCATTTATAAGATTATAAAACCACTT-AAAGCGAGTAACTAGGCTTTCG
* * * * * * * **
22469140 AATGCATGAGTGACTATAAATGGAATTTTCTTGTGAATGAATAGCATTT-GCTTCACTTTTTTTG
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCTCA
* * * *
22469204 ATGCAAATATCCAATTACGATCCGTTTTAAGTAAAAATGAAAAA
127 ATGCAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
* * * * *
22469248 CAAATTCACTTTATAATCATTTATAA-AGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCA
1 -AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCG
** * * * * ** * **
22469312 AATCCATGACTGAATATAAATAGACATTTCTTGTCAATGGATTACTTTTGCTTCATATTTCTCAA
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
** * * * * * *
22469377 TGTGAACATCCAATGATAATCTATGTTCA-TCATAAATGAAAAA
128 TGCAAACATCCAATTATGATCTGTTTTAACT-AAAAATGAAAAA
* * * * * * * * *
22469420 AAATCAACTTAAAATCATTTATAATG-TTAT-AAACCACTTACAGTGAGCAACAAGACATTCCAA
1 AAATTAATTTAAAATCATTTATAA-GATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
* * * **
22469483 GGAATGAGTGATTATAAATGGA-TTTT-TTTTCAATGGATGGCTTTCGCTTCACGTTTCTTGATG
65 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATG
* *
22469546 CGAACATCCAATGATGATCTGTTTTAA-TGAAAAATG-AAAA
130 CAAACATCCAATTATGATCTGTTTTAACT-AAAAATGAAAAA
* * * * * *
22469586 AAATTCAATTTGAAATCATTTATAA-AGTTATAAAACAACTTAAAGCAAGTAACAAAGCATTCGA
1 AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGA
* * * * ** * *
22469650 AGGCATGAGCGACTATAAATGGACCTTTCTTGTCAAAT-GACGGTTTTCATTTCATGTTTCCCAA
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCAA
* * *
22469714 TGCAAACAT-CAAGTTATAATCTATTTTAACTAAAAATGAAAACG
128 TGCAAACATCCAA-TTATGATCTGTTTTAACTAAAAATGAAAA-A
* * * * * * * * *
22469758 AAGTATAGTTTAAACTCATTCATAAGATTACAGAACCATTTATAA-CGAGTAACTAGACTTTCAA
1 AAAT-TAATTTAAAATCATTTATAAGATTATAAAACCACTTA-AAGCGAGTAACTAGGCTTTCGA
* * * * *
22469822 AGGAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCACTTCACGTTT-TCTGA
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AA
* * **
22469886 TGCAAATATCCAATTACGATCCATTTTAAGCT-AAAATGAAAAAA
128 TGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAATG-AAAAA
* * * * * *
22469930 AAAATAGTTTGAAATCATTTATAA-AGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
1 AAATTAATTTAAAATCATTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA
* * * * * *
22469994 GCCGTAAGTGACTATAAATGGACTTTTCTTGTCAATGGGTGGCTTTC-ATTACATGTTTCTCAAT
65 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCTCAAT
* * * *
22470058 GCGAGTA-AT-CGATTATGATATGTTTTAACCAAAAATGAAAAA
129 GC-A-AACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
** * * * * * * * *
22470100 ATTTTGATTTAAAATAATTTATAGGACTATAAAATCATTTAAAGCGAGTAACTCGACTTTCGAAG
1 AAATTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAG
* * * * * * * **
22470165 CCATGAGCGGCTATAAATGGACTTTTCTTGTCCATAGG-TGGCTTTTGCTACACCTTTCTCAAAA
66 GCATGAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCACGTTTCTCAATG
* ** * * *
22470229 TAAACATCCAATTACAATCTATTTTATAC-AGAAATGGAAACA
130 CAAACATCCAATTATGATCTGTTTTA-ACTAAAAAT-GAAAAA
* * * * * * * *
22470271 AAATTAATTTAAAATCATTTATAAGATTATAAAATCATTTAATGCAACTAACAAGCCTTTCGAAA
1 AAATTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAG
* * * * * * * *
22470336 GCCTAAGTGACTATAAATGGACTTTTTTTATTAATGGATGGCTTTCACTTCACATTTCCCAATGC
66 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGC
* * * *
22470401 GAACATCAAATTATGATCTGTTTCAACCAAAAATGAAGAAAAAA
131 AAACATCCAATTATGATCTGTTTTAACTAAAAAT---G-AAAAA
* *
22470445 AAATACAATTTAAACTCATTTATAAGATTATAAAACCACTTAA
1 AAAT-TAATTTAAAATCATTTATAAGATTATAAAACCACTTAA
22470488 TCTTATAAGA
Statistics
Matches: 2822, Mismatches: 670, Indels: 280
0.75 0.18 0.07
Matches are distributed among these distances:
166 8 0.00
167 112 0.04
168 139 0.05
169 199 0.07
170 628 0.22
171 854 0.30
172 542 0.19
173 41 0.01
174 219 0.08
175 80 0.03
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (170 bp):
AAATTAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAG
GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGC
AAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA
Found at i:22468490 original size:339 final size:341
Alignment explanation
Indices: 22466687--22470487 Score: 2120
Period size: 341 Copynumber: 11.1 Consensus size: 341
22466677 ATAAACAAAT
* * * * *
22466687 TCAATTTAAAATTATTTATAAAGTTATAAAACCACTTAAAGAGAGTAACAAAGCTTTCGAAGACA
1 TCAATTTAAAATCATTTATCAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCA
* * * * * ** * * * * *
22466752 TGAATGATTACAAATTGACTTTTCTTGTCAATGGATTACTTACGTTTCATGTTTCTCAATATGAA
66 TGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTACACGTTTCTCAATGTGAA
* * * * * *
22466817 CATCCAATGATGATCTATTTTCACCAGAAATGAAAAGAAATTCAACTTAAAATCATTTATAATGA
131 CATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATAAT-A
* * * * *** * * **
22466882 GGTTATAGAACCATTTCAAGTGAGTAA-TAGGGCTTTCGAAGGCATGAGTGACTGCAAATGGACT
195 -CTTATAAAACCACTTAAAACAAGTAACTA-AGCTTTCAAAGGCATGAGTGACTATAAATGGACT
** * * * *
22466946 TTTC-TAACGAATGGAT-G-ACTTT-CATAACATGTTTTCCCAATNCAAACATCAAATTATGA-T
258 TTTCTTGTC-AATGGATAGCA-TTTGCTTCACA---TTTCCCAATGCAAATATCAAATTATGATT
* * *
22467006 CTATTTTAACCAAAAAT-AAAAAAGTA
318 C-GTTTTAAGC-AAAATGAAAAAA-AA
** * * * * * * * *
22467032 TTGATTTAAAATAATTTAT-AAGACTATAAAACCATTTAAAGCAAGTAACTATGCTTCCGAAGGC
1 TCAATTTAAAATCATTTATCAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCC
* * * * *
22467096 ATGAGTGACTATAAATAGG-CTTTTCTTGTTAATGGATGGCTTTCGTTTCACGGTTT-T-AGATT
65 ATGAGTGACTATAAAT-GGACTTTTCTTATCAATGGATGGCTTTCGCTACAC-GTTTCTCA-ATG
* * * * * * * ** *
22467158 TGAACATCCAATGATGATCTGTTTTCACTACAAATGAAAAACAATTCAACGTAATATCATTTATA
127 TGAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATA
* * *
22467223 AT-GTTATAAAACCACTTAAAGCGAA-TAAC-AAGGCATTT-GAAGGCATGAGTGACTATAAATG
192 ATACTTATAAAACCACTTAAAAC-AAGTAACTAA-GC-TTTCAAAGGCATGAGTGACTATAAATG
* * * ** * *
22467284 GACTTTTCTTGTCAAAGGATGGC-TTTCGCTTGATGTTT-CCAGATGCAAATATCAAATTCTAAT
254 GACTTTTCTTGTCAATGGATAGCATTT-GCTTCACATTTCCCA-ATGCAAATATCAAATTATGAT
* * * *
22467347 AT-GTTTCAACCAAAAATGGAAAAGAAG
317 -TCGTTTTAAGC-AAAAT-GAAAAAAAA
* * * * * ** * *
22467374 TACAATTTAAACTTATTCAT-AAGATTATAAAATCATTTAAAATGAGTAACTAGGCTTTCGAAGG
1 T-CAATTTAAAATCATTTATCAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGC
** * * * * * * **
22467438 CATGAGTGACTATAAATAAACTTTTCTTGTCAATGGATAGCATTCACTTA-ATGTTTCCCAATAC
64 CATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGC-TACACGTTTCTCAATGT
* * * * * * ** ** * *
22467502 AAATATCCAATAACGATCCATTTTAAGCTTAAATGAAAAAAAATTTAGTTTGAAATCATTTATAA
128 GAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATAA
* * * * * * * * * *
22467567 -AATCATAAAACCATTTAAAATGAA--AAATAAGGCTTTCGAAGCCTTAAGTGGCTATAAATGGA
193 TACTTATAAAACCACTTAAAA-CAAGTAACTAA-GCTTTCAAAGGCATGAGTGACTATAAATGGA
* *
22467629 CTTTTCTTGTCAATGGGT-G-ACTTT-CGTT-ACATGTTTCCCAATGCGAACAT-TC-GATTATG
256 CTTTTCTTGTCAATGGATAGCA-TTTGC-TTCACA--TTTCCCAATGC-AA-ATATCAAATTATG
*
22467688 A-TCTATTTTAA-CTAAAAATGAAAAAAAA
315 ATTC-GTTTTAAGC--AAAATGAAAAAAAA
** * * * ** * *
22467716 TTGATTTAAAATAATTTAT-AAGACTATAAAGCCGTTTAAAGCCAGTAACTAGGCTTTCGAAGCC
1 TCAATTTAAAATCATTTATCAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCC
* * * * * *
22467780 ATGAGTGACTATAAACGGACTTTTCTTGTCCATAGG-TGGCTTTCGCTACACCTCTCTCAATGTA
65 ATGAGTGACTATAAATGGACTTTTCTTATCAAT-GGATGGCTTTCGCTACACGTTTCTCAATGTG
* * *** * * *
22467844 AACATCTAATTATGATCTATTTTATCTGTAAATGAAAAAAAAAATTAATTTAAAATCATTTATAG
129 AACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATA-CAATTTAAAATCATTTATAA
* * ** * * * * *
22467909 TA-TTATAAAATCACTTAATATGACTAA-TAAGGCTTTCGAAGGTATGAGTTACTACAAATGGAC
193 TACTTATAAAACCACTTAAAACAAGTAACTAA-GCTTTCAAAGGCATGAGTGACTATAAATGGAC
* *
22467972 TTTTCTTGTCAATGGATAGCATTTGCTTCACATTTTCCAATGCAAATATCAAATTATGATCCGTT
257 TTTTCTTGTCAATGGATAGCATTTGCTTCACATTTCCCAATGCAAATATCAAATTATGATTCGTT
* * * *
22468037 TCAAGCATAAACGAAAAACAT
322 TTAAGCA-AAATGAAAAAAAA
* * * * * *
22468058 TCAAATTAAAATCATTTATGAATTTATAAAGCCACTTAAAGCGAGTAATAAGGCTTTCGAAGCTA
1 TCAATTTAAAATCATTTATCAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCA
* *
22468123 TGAGT-AGCTATAAATGGACTTTTCTTATCAATTGG-TGGGTTTCGCTATACGTTTCTCAATGTG
66 TGAGTGA-CTATAAATGGACTTTTCTTATCAA-TGGATGGCTTTCGCTACACGTTTCTCAATGTG
* * *
22468186 AACATCCAATTATGATCTTTTTTAACCAAAAATGGAAAAAAAATACAATTTAAACTCATTCATAA
129 AACATCCAATTATGATCTATTTTAACCAAAAAT-GAAAAAAAATACAATTTAAAATCATTTATAA
* * *
22468251 TA-TTATAAAAACA-TTAAAACAAGTCACTAAGCTTTCAAAGGCATGAGTGACTATAAATAGACT
193 TACTTATAAAACCACTTAAAACAAGTAACTAAGCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * *
22468314 TTTCTTGTTAGTGGATAGCATTTGCTTCACATTTCCTAATGTAAATATCCAATTACGATTCGTTT
258 TTTCTTGTCAATGGATAGCATTTGCTTCACATTTCCCAATGCAAATATCAAATTATGATTCGTTT
*
22468379 TAAGCAAAAT-AAAAAAAT
323 TAAGCAAAATGAAAAAAAA
* * * *
22468397 TTAATTTAAAATCATTTAT-AAGGTTAGAAAACCAATTAAAGCGAGTAACAAGGCTTTTGAAGCC
1 TCAATTTAAAATCATTTATCAA-GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCC
* * * * * * * * *
22468461 AAGAGTGGCGATAAATGGACTTTTCTTATCAATGGATGGGTTTTGCTACAC-ATTCCCTAAAGCG
65 ATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTACACGTTTCTC-AATGTG
* * * * * * * ** *
22468525 AACATCTAATTATAATATGTTTTATCCAAACATTAAAAAAAAT-TGATTCAAAAT-AGTTTATAA
129 AACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCA-TTTATAA
* * ** * ** *
22468588 GACTT-TAAAACCATTTAAAGA-GTGTAACTGCA-CTTTTGAAGGCATAAGTGACTATAAATGGA
193 TACTTATAAAACCACTTAAA-ACAAGTAACT-AAGCTTTCAAAGGCATGAGTGACTATAAATGGA
* ** * * * *
22468650 CTTTTCTTGTCAATGGACAGC-TTTCGCAACACATTCCCCACTACAAACT-TCCAATTATGA-TC
256 CTTTTCTTGTCAATGGATAGCATTT-GCTTCACATTTCCCAATGCAAA-TATCAAATTATGATTC
*
22468712 TGTTTTAACCAAAATGAAAAAAAA
319 -GTTTTAAGCAAAATGAAAAAAAA
* *
22468736 TCAATCTAAAATCATTTATCAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAAG-C
1 TCAATTTAAAATCATTTATCAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCG-AAGCC
* * * * * * **
22468800 ATGAGTGACTATAAATGGACTTTTGTTGTCAATGGATGGCTTTTGCTTCATGTGTCTTGATGTGA
65 ATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTACACGTTTCTCAATGTGA
* * *
22468865 ACATCCAATGACGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAA-A
130 ACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATAATA
* * * * ** * *
22468929 GTTATAAAACCACTTAAAGCGAGTAACAAAGCAATAAAAGGCATGAGTGACAATAAATGGACTTT
195 CTTATAAAACCACTTAAAACAAGTAACTAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTT
* * * ** *
22468994 TCTTGACAATGGATAGCGTTCGCTTCATGTTTCCCAATGCAAACATCAAATTATGATAT-GTTTT
260 TCTTGTCAATGGATAGCATTTGCTTCACATTTCCCAATGCAAATATCAAATTATGAT-TCGTTTT
*
22469058 AATCAAAAATGAAAAAAAAAA
324 AAGC-AAAATG--AAAAAAAA
* * * * * * * * * *
22469079 GTACAATTTAAACTCATTCAT-AAGACTACAAAACCATTTGGAA-TGAGTAACTATGCTTTTGAA
1 -T-CAATTTAAAATCATTTATCAAG-TTATAAAACCACTT-AAAGCGAGTAACAAGGCTTTCGAA
* * * * * * * * **
22469142 TG-CATGAGTGACTATAAATGGAATTTTCTTGTGAATGAATAGCATTT-GCTTCACTTTTTTTGA
62 -GCCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGC-TTTCGCTACACGTTTCTCAA
** * * ** ** * * *
22469205 TGCAAATATCCAATTACGATCCGTTTTAAGTAAAAATGAAAAACAAATTCACTTTATAATCATTT
125 TGTGAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAA-AAATACAATTTAAAATCATTT
* *** ** * *
22469270 ATAA-AGTTATAAAACCACTTAAAGTGAGTAAC-AAGGCTTTCAAATCCATGACTGAATATAAAT
189 ATAATACTTATAAAACCACTTAAAACAAGTAACTAA-GCTTTCAAAGGCATGAGTGACTATAAAT
* * * * * ** * * * *
22469333 AGACATTTCTTGTCAATGGATTA-CTTTTGCTTCATATTTCTCAATGTGAACATCCAATGAT-AA
253 GGACTTTTCTTGTCAATGGA-TAGCATTTGCTTCACATTTCCCAATGCAAATATCAAATTATGAT
* *
22469396 TC-TATGTTCATCATAAATGAAAAAAAA
317 TCGT-T-TTAAGCA-AAATGAAAAAAAA
* * * * * * * **
22469423 TCAACTTAAAATCATTTAT-AATGTTAT-AAACCACTTACAGTGAGCAACAAGACATTCCAAGGA
1 TCAATTTAAAATCATTTATCAA-GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCC
* * * ** *
22469486 ATGAGTGATTATAAATGGA-TTTT-TTTTCAATGGATGGCTTTCGCTTCACGTTTCTTGATGCGA
65 ATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTACACGTTTCTCAATGTGA
* * ** * *
22469549 ACATCCAATGATGATCTGTTTTAATGAAAAATG-AAAAAAATTCAATTTGAAATCATTTATAA-A
130 ACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATAATA
* * * * * * * *
22469612 GTTATAAAACAACTTAAAGCAAGTAACAAAGCATTCGAAGGCATGAGCGACTATAAATGGACCTT
195 CTTATAAAACCACTTAAAACAAGTAACTAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTT
* * * ** * * * *
22469677 TCTTGTCAAAT-GA-CG-GTTTTCATTTCATGTTTCCCAATGCAAACATCAAGTTAT-AATCTAT
260 TCTTGTC-AATGGATAGCATTTGC--TTCACATTTCCCAATGCAAATATCAAATTATGATTC-GT
*
22469738 TTTAA-CTAAAAATGAAAACGAAGTA
321 TTTAAGC--AAAATGAAAA--AA-AA
* * * * * * * * * *
22469763 T-AGTTTAAACTCATTCAT-AAGATTACAGAACCATTTATAA-CGAGTAACTAGACTTTCAAAGG
1 TCAATTTAAAATCATTTATCAAG-TTATAAAACCACTTA-AAGCGAGTAACAAGGCTTTCGAAGC
* * * * * * * *
22469825 AATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCACTTCACGTTT-TCTGATGC
64 CATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTACACGTTTCTC-AATGT
* * * * * * * * * *
22469889 AAATATCCAATTACGATCCATTTTAAGCTAAAATGAAAAAAAAAATAGTTTGAAATCATTTATAA
128 GAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATAA
* *** ** * * *
22469954 -AGTTATAAAACCACTTAAAGTGAGTAAC-AAGGCTTTTGAAGCCGTAAGTGACTATAAATGGAC
193 TACTTATAAAACCACTTAAAACAAGTAACTAA-GCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * *
22470017 TTTTCTTGTCAATGGGTGGC-TTT-CATT-ACATGTTTCTCAATGCGAGTAATC-GATTATGATA
257 TTTTCTTGTCAATGGATAGCATTTGC-TTCACA--TTTCCCAATGCAAAT-ATCAAATTATGAT-
* **
22470078 T-GTTTTAACCAAAAATGAAAAAATT
317 TCGTTTTAAGC-AAAATGAAAAAAAA
** * * * * * ** *
22470103 TTGATTTAAAATAATTTAT-AGGACTATAAAATCATTTAAAGCGAGTAACTCGACTTTCGAAGCC
1 TCAATTTAAAATCATTTATCAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCC
* * * * * * ** *
22470167 ATGAGCGGCTATAAATGGACTTTTCTTGTCCATAGG-TGGCTTTTGCTACACCTTTCTCAAAATA
65 ATGAGTGACTATAAATGGACTTTTCTTATCAAT-GGATGGCTTTCGCTACACGTTTCTCAATGTG
** * * *
22470231 AACATCCAATTACAATCTATTTTATA-CAGAAATGGAAACAAAAT-TAATTTAAAATCATTTATA
129 AACATCCAATTATGATCTATTTTA-ACCAAAAAT-GAAAAAAAATACAATTTAAAATCATTTATA
* * * ** * * *
22470294 AGA-TTATAAAATCATTTAATGCAACTAAC-AAGCCTTTCGAAA-GCCTAAGTGACTATAAATGG
192 ATACTTATAAAACCACTTAAAACAAGTAACTAAG-CTTTC-AAAGGCATGAGTGACTATAAATGG
* * * * * * *
22470356 ACTTTTTTTATTAATGGATGGC-TTTCACTTCACATTTCCCAATGCGAACATCAAATTATGA-TC
255 ACTTTTCTTGTCAATGGATAGCATTT-GCTTCACATTTCCCAATGCAAATATCAAATTATGATTC
* *
22470419 TGTTTCAACCAAAAATGAAGAAAAAAAAA
319 -GTTTTAAGC-AAAAT---G-AAAAAAAA
*
22470448 TACAATTTAAACTCATTTAT-AAGATTATAAAACCACTTAA
1 T-CAATTTAAAATCATTTATCAAG-TTATAAAACCACTTAA
22470488 TCTTATAAGA
Statistics
Matches: 2734, Mismatches: 570, Indels: 303
0.76 0.16 0.08
Matches are distributed among these distances:
335 4 0.00
336 2 0.00
337 148 0.05
338 127 0.05
339 354 0.13
340 187 0.07
341 557 0.20
342 453 0.17
343 394 0.14
344 47 0.02
345 292 0.11
346 167 0.06
347 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (341 bp):
TCAATTTAAAATCATTTATCAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCA
TGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTACACGTTTCTCAATGTGAA
CATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAAATACAATTTAAAATCATTTATAATAC
TTATAAAACCACTTAAAACAAGTAACTAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATAGCATTTGCTTCACATTTCCCAATGCAAATATCAAATTATGATTCGTTTTAA
GCAAAATGAAAAAAAA
Found at i:22471022 original size:170 final size:168
Alignment explanation
Indices: 22470558--22472509 Score: 1304
Period size: 171 Copynumber: 11.4 Consensus size: 168
22470548 TAATGATATG
* * ** * *
22470558 TTTTAACCAAAAAATGGAAAAGAAGTACAATTTAATCTC-ATTCATAAGATTACAAAACCATTTA
1 TTTTAACC-AAAAAT-GAAAA-AAATTCAATTTAAAATCAATT-ATAAG-TTATAAAACCACTTA
* ** * * * *
22470622 AAATGAGTAACTACACTTTCGAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATAG
61 AAACGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * * * **
22470687 CATTCGCTTCACGTTTCCTAATGTAAATATCCAATTGCGATCTA
125 CTTTCGCTTCACGTTTCCTGATGCAAACATCCAATTATGATCTA
* * ** * ** *
22470731 TTTTAACAAAAAATGAAAAATATTTTGATTTAAAAT-AATTTATAAGACTATAAAATGATTTAAA
1 TTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCAA-TTATAAG-TTATAAAACCACTTAAA
* * * * *
22470795 GCGAGTAACTAGACTTTCGAAGGCGTGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGGCC
63 ACGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-C
* * *
22470860 TTT-GCTTCACGTTTCCTGATGCCAACATTCAATTATGATCTG
126 TTTCGCTTCACGTTTCCTGATGCAAACATCCAATTATGATCTA
* * * *
22470902 TTTTGACCAAAAATGAAAACAATTCAATTCAAAATCAATTATACAGTTATAAAACCGCTTAAAAC
1 TTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCAATTATA-AGTTATAAAACCACTTAAAAC
* * * *
22470967 TAGTAATAAGGCTTTGGACA-GCATGAGTGAGC-ATAAATGGACTTTTCTTGTCAATGGATGGTT
65 GAGTAAT-AGGCTTT-CAAAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * * *
22471030 TTCACTTCACATTCCCTAAAGCAAACATCCAATTATGATC-A
127 TTCGCTTCACGTTTCCTGATGCAAACATCCAATTATGATCTA
** * * * *
22471071 GTTTTAACCAAAAATGGAAAGCAATTCAATTCAAAATCATTTACAAAGTTATAAAACCACTGAAA
1 -TTTTAACCAAAAAT-GAAAAAAATTCAATTTAAAATCAATTA-TAAGTTATAAAACCACTTAAA
**** * **
22471136 TA-GAGTAACTCTATTTTCGAAGGCATGAGTGACTATAAATAAAC-TTTCTTGTCAATGGATGGC
63 -ACGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * **
22471199 TTTCGCTTCACGTTT-CTCAAGGCAAACATCCAATGACAATCTA
126 TTTCGCTTCACGTTTCCT-GATGCAAACATCCAATTATGATCTA
* * * *
22471242 TTTTAACCAAAAATGAAAAATAATTTAATTTAAAATCATTTATAAAGTTATGAAACCACTTAAAG
1 TTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCAATTAT-AAGTTATAAAACCACTTAAAA
* * * *
22471307 TGAGTAACAAGGCATTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGGCTT
64 CGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
* * * * * * *
22471372 TCGTTTTACATTTTCC--ACTGCAAATAT-CAAGTTATGGTTTG
128 TCGCTTCAC-GTTTCCTGA-TGCAAACATCCAA-TTATGATCTA
*** * * * *
22471413 TTTTAACCAAAAATGGAAAAGAAGGACAATTTAAACTCACTCAT-A---ATAAAACCATTTAAAA
1 TTTTAACCAAAAAT-GAAAA-AAATTCAATTTAAAATCAATTATAAGTTATAAAACCACTTAAAA
* * * * *
22471474 CGAGTAACTAGACTATCAAAGACATGAGTGACTGTAAATGGACTTTTCTTGTCAATGGATAGCAT
64 CGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-T
* * * * ** *
22471539 TT-GCTTCACATTTTCC-AATGCAAATATCCAGTTACAAACTA
127 TTCGCTTCAC-GTTTCCTGATGCAAACATCCAATTATGATCTA
** * *
22471580 TTTTAACCAAAAATGAAAAAAATTTTGATTTAAAAT-AATTTATAAGACTATAAAACCATTTAAA
1 TTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCAA-TTATAAG-TTATAAAACCACTTAAA
** * * *
22471644 GTGAGTAATTGGACTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCT
63 ACGAGTAATAGG-CTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * *
22471709 TTCGCTTCATGTTT-CTCGATGCGAACATTCAATTATGATTCT-
127 TTCGCTTCACGTTTCCT-GATGCAAACATCCAATTATGA-TCTA
* * * *
22471751 TTTTAACCAGAAATGAAAAAAAAATCAACTTAAAA-C-ATCTATAAAGTTGTAAAACCACTTAAA
1 TTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCAAT-TAT-AAGTTATAAAACCACTTAAA
* * * * * * ** * * * *
22471814 GCGAATGACTAGGCTAT-AGAAGGAATGAGTAAGAATAAATAGACGTTTCTTATCAATGGAAGGC
63 ACGAGT-AATAGGCTTTCA-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * *
22471878 TTTTGCTTCACGTTT-CTCGATGCGAACATCCAATGATGATTTG
126 TTTCGCTTCACGTTTCCT-GATGCAAACATCCAATTATGATCTA
* * * * * ** *
22471921 TTTTAATCAAAAATGGAAAAGAAGTACAATATGATCTC-ATTCATAAGATTATAAAACCATTTAA
1 TTTTAACCAAAAAT-GAAAA-AAATTCAATTTAAAATCAATT-ATAAG-TTATAAAACCACTTAA
* * * ** * * * *
22471985 GACAAATAACTAGGCTTTCAAAGGCATGAGTGACTATAAGCGAACTTTTCTTGTCAGTGGCTAGC
62 AACGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * ** *
22472050 ATTCACTTCACGTTT-CTCGATGCAAATATCCAATTACAATCCA
126 TTTCGCTTCACGTTTCCT-GATGCAAACATCCAATTATGATCTA
* * * * *
22472093 TTTTAGCCAAAAATGAAAAAAAACTCAATTCAAAATCAATCATAAAGTTATAAAACCACTTAAAG
1 TTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCAATTAT-AAGTTATAAAACCACTTAAAA
* * * * * * * *
22472158 GGAGTAACAAGGTTTTCGAAGTCATGAGTGACTATAAATGGACTTTTCTTGTCAAGGGGTAGCTT
64 CGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
* *
22472223 TCGCTAT-ACATTTTCCT-ATGCAAATATCCAATTATGATCTA
128 TCGCT-TCAC-GTTTCCTGATGCAAACATCCAATTATGATCTA
* ** ** * * ** * *
22472264 TTGT-ACTCAAAACTAAAAAAAAAACTTTGATTTAAAACCATTTATAAGACCAAAAAACCATTTA
1 TTTTAAC-CAAAA--ATGAAAAAAA-TTCAATTTAAAATCAATTATAAG-TTATAAAACCACTTA
* *
22472328 AAGA-TAGTAACTAGGCTTTCAAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTCAATGGATG
61 AA-ACGAGTAA-TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** * * * *
22472392 GCTTTCGTTTCACGTTTCTTGATGTGAACATTCAATTTTGATTTG
124 GCTTTCGCTTCACGTTTCCTGATGCAAACATCCAATTATGATCTA
* * * * * * *
22472437 TTTTCACCAGAAATGAAAACAATTAAACTTAAAATC-ATTCATAATGTTATAAAACTACTTAAAG
1 TTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCAATT-ATAA-GTTATAAAACCACTTAAAA
*
22472501 CAAGTAATA
64 CGAGTAATA
22472510 AGGAGTAAAT
Statistics
Matches: 1384, Mismatches: 319, Indels: 156
0.74 0.17 0.08
Matches are distributed among these distances:
165 3 0.00
166 16 0.01
167 107 0.08
168 6 0.00
169 19 0.01
170 413 0.30
171 514 0.37
172 180 0.13
173 124 0.09
174 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (168 bp):
TTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCAATTATAAGTTATAAAACCACTTAAAACG
AGTAATAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
CTTCACGTTTCCTGATGCAAACATCCAATTATGATCTA
Found at i:22472257 original size:513 final size:508
Alignment explanation
Indices: 22470988--22472287 Score: 1275
Period size: 508 Copynumber: 2.5 Consensus size: 508
22470978 CTTTGGACAG
* * * ** * *
22470988 CATGAGTGAGC-ATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACA-TTCCCTAAAG
1 CATGAGTGA-CTATAAACGAACTTTTCTTGTCAATGGATAGCATTCACTTCACATTTTCC-AATG
* ** * ** * *
22471051 CAAACATCCAATTATGAT-CAGTTTTAACCAAAAATGGAAAGCAATTCAATTCAAAATCATTTAC
64 CAAATATCCAATTACAATCCA-TTTTAACCAAAAATGAAAAAAAATTCAATTCAAAATCA-ATAT
* * *** **
22471115 AAAGTTATAAAACCACTGAAATAGAGTAACTCTATTTTCGAAGGCATGAGTGACTATAAATAAAC
127 AAAGTTATAAAACCACTTAAAGAGAGTAACTAGGTTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
22471180 -TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATGA-CAATCTAT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCA-TTTTCTCAATGCAAACATCCAATTATGATTCTAT
* * * * * * *
22471243 TTTAACCAAAAATGAAAAATAATTTAATTTAAAATCATTTATAAAGTTATGAAACCACTTAAAGT
256 TTTAACCAAAAATGAAAAAAAAATCAACTTAAAATCATCTATAAAGTTATAAAACCACTTAAAGC
* * * * * ** * *
22471308 GAGTAACAAGGCATTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGGCTTT
321 GAATAACAAGGCATTCAAAGGAATGAGTAACAATAAATAGACGTTTCTTATCAATGGAAGGCTTT
* * * * *
22471373 CGTTTTACATTTTCCACTGCAAATATCAAGTTATGGTTTGTTTTAACCAAAAATGGAAAAGAAGG
386 CGCTTCACATTTTCCACTGCAAACATCAAGTGATGATTTGTTTTAACCAAAAATGGAAAAGAAGG
* * *
22471438 ACAATTTAAACTCACTCATAATAAAACCATTTAAAACGAGTAACTAGACTATCAAAGA
451 ACAATATAAACTCACTCATAATAAAACCATTTAAAACAAATAACTAGACTATCAAAGA
* * * **
22471496 CATGAGTGACTGTAAATGGACTTTTCTTGTCAATGGATAGCATTTGCTTCACATTTTCCAATGCA
1 CATGAGTGACTATAAACGAACTTTTCTTGTCAATGGATAGCATTCACTTCACATTTTCCAATGCA
* * * * ** * *
22471561 AATATCCAGTTACAAACTATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAAT-AATTTATAA
66 AATATCCAATTACAATCCATTTTAACCAAAAATGAAAAAAAATTCAATTCAAAATCAATATA-AA
* * * * * * *
22471625 GACTATAAAACCATTTAAAGTGAGTAA-TTGGACTTTCAAAGGCATAAGTGACTATAAATGGACT
130 G-TTATAAAACCACTTAAAGAGAGTAACTAGG-TTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * *
22471689 TTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCGAACATTCAATTATGATTCT-TT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCAT-TTTCTCAATGCAAACATCCAATTATGATTCTATT
* *
22471753 TTAACCAGAAATGAAAAAAAAATCAACTTAAAA-CATCTATAAAGTTGTAAAACCACTTAAAGCG
257 TTAACCAAAAATGAAAAAAAAATCAACTTAAAATCATCTATAAAGTTATAAAACCACTTAAAGCG
* * *
22471817 AATGACTAGGC-TAT-AGAAGGAATGAGTAAGAATAAATAGACGTTTCTTATCAATGGAAGGCTT
322 AATAACAAGGCAT-TCA-AAGGAATGAGTAACAATAAATAGACGTTTCTTATCAATGGAAGGCTT
* * * * *
22471880 TTGCTTCACGTTTCTCGA-TGCGAACATCCAA-TGATGATTTGTTTTAATCAAAAATGGAAAAGA
385 TCGCTTCACATTT-TCCACTGCAAACAT-CAAGTGATGATTTGTTTTAACCAAAAATGGAAAAGA
* * * * * * *
22471943 AGTACAATATGATCTCATTCATAAGATTATAAAACCATTTAAGACAAATAACTAGGCTTTCAAAG
448 AGGACAATATAAACTCACTCAT---A--ATAAAACCATTTAAAACAAATAACTAGACTATCAAAG
*
22472008 G
508 A
* * * * *
22472009 CATGAGTGACTATAAGCGAACTTTTCTTGTCAGTGGCTAGCATTCACTTCAC-GTTTCTCGATGC
1 CATGAGTGACTATAAACGAACTTTTCTTGTCAATGGATAGCATTCACTTCACATTTTC-CAATGC
* *
22472073 AAATATCCAATTACAATCCATTTTAGCCAAAAATGAAAAAAAACTCAATTCAAAATCAATCATAA
65 AAATATCCAATTACAATCCATTTTAACCAAAAATGAAAAAAAATTCAATTCAAAATCAAT-ATAA
* * *
22472138 AGTTATAAAACCACTTAAAGGGAGTAACAAGGTTTTCGAAGTCATGAGTGACTATAAATGGACTT
129 AGTTATAAAACCACTTAAAGAGAGTAACTAGGTTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
22472203 TTCTTGTCAAGGGGTAGCTTTCGCTATACATTTTC-CTATGCAAATATCCAATTATGA-TCTATT
194 TTCTTGTCAATGGATGGCTTTCGCT-T-CATTTTCTCAATGCAAACATCCAATTATGATTCTATT
* * *
22472266 GT-ACTCAAAACTAAAAAAAAAA
257 TTAAC-CAAAAATGAAAAAAAAA
22472288 CTTTGATTTA
Statistics
Matches: 637, Mismatches: 129, Indels: 47
0.78 0.16 0.06
Matches are distributed among these distances:
506 2 0.00
507 8 0.01
508 272 0.43
509 88 0.14
510 4 0.01
511 1 0.00
512 9 0.01
513 235 0.37
514 13 0.02
515 5 0.01
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (508 bp):
CATGAGTGACTATAAACGAACTTTTCTTGTCAATGGATAGCATTCACTTCACATTTTCCAATGCA
AATATCCAATTACAATCCATTTTAACCAAAAATGAAAAAAAATTCAATTCAAAATCAATATAAAG
TTATAAAACCACTTAAAGAGAGTAACTAGGTTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCTTTCGCTTCATTTTCTCAATGCAAACATCCAATTATGATTCTATTTTAA
CCAAAAATGAAAAAAAAATCAACTTAAAATCATCTATAAAGTTATAAAACCACTTAAAGCGAATA
ACAAGGCATTCAAAGGAATGAGTAACAATAAATAGACGTTTCTTATCAATGGAAGGCTTTCGCTT
CACATTTTCCACTGCAAACATCAAGTGATGATTTGTTTTAACCAAAAATGGAAAAGAAGGACAAT
ATAAACTCACTCATAATAAAACCATTTAAAACAAATAACTAGACTATCAAAGA
Found at i:22473054 original size:171 final size:171
Alignment explanation
Indices: 22472754--22473065 Score: 371
Period size: 171 Copynumber: 1.8 Consensus size: 171
22472744 AAAAAATTAT
* **
22472754 CATTTAAAGCAAGTAACTAGGCTTTCAAAGTTATGAGTGACTATAAAAAGACTCTTCATGTCAAT
1 CATTTAAAGCAAGCAACTAGGCTTTCAAAGGCATGAGTGACTATAAAAAGACTCTTCATGTCAAT
* * * * * *
22472819 GGATGGCTTTCGTTTCACATTTTCCAATGCAAATAGCAAATTTCGATCTGTTTTAAGAAAAAATG
66 GGATGGCTTTCGCTTCACATTTTCCAAGGCAAACAGCAAATTTCAATCTGTCTTAACAAAAAATG
*
22472884 ACAAAAAATTCTATTTAAAGTCATTTATAAGATTATAAAAC
131 AAAAAAAATTCTATTTAAAGTCATTTATAAGATTATAAAAC
** ** * * ** *
22472925 CATTTAAAGCAAGCAACTAGGCTTTTTAAGGCATGAGTGACTATAAATGGATTTTTGTTGTTAAT
1 CATTTAAAGCAAGCAACTAGGCTTTCAAAGGCATGAGTGACTATAAAAAGACTCTTCATGTCAAT
* *
22472990 GGATGGCTATT-GCTTCACA-TTTCCTAAGGCAAACATTC-AATTAT-AATCTGTCTTAACCAAA
66 GGATGGCT-TTCGCTTCACATTTTCC-AAGGCAAACA-GCAAATT-TCAATCTGTCTTAACAAAA
22473051 AATGAAAAAAAATTC
127 AATGAAAAAAAATTC
22473066 AATTCAAAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
170 5 0.04
171 107 0.92
172 4 0.03
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
CATTTAAAGCAAGCAACTAGGCTTTCAAAGGCATGAGTGACTATAAAAAGACTCTTCATGTCAAT
GGATGGCTTTCGCTTCACATTTTCCAAGGCAAACAGCAAATTTCAATCTGTCTTAACAAAAAATG
AAAAAAAATTCTATTTAAAGTCATTTATAAGATTATAAAAC
Found at i:22475195 original size:13 final size:13
Alignment explanation
Indices: 22475177--22475201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22475167 AGAGAAATTG
22475177 TGATTTTATAAAA
1 TGATTTTATAAAA
22475190 TGATTTTATAAA
1 TGATTTTATAAA
22475202 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:22477189 original size:27 final size:28
Alignment explanation
Indices: 22477149--22477207 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
22477139 GTCTATGGGC
*
22477149 AATTTTTCAGTTTT-GGGGCAAAAATGT
1 AATTTTTCACTTTTAGGGGCAAAAATGT
*
22477176 AATTTTTGACTTTTACGGGGGCAAAAATGT
1 AATTTTTCACTTTTA--GGGGCAAAAATGT
22477206 AA
1 AA
22477208 ATTTGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 12 0.44
30 15 0.56
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (28 bp):
AATTTTTCACTTTTAGGGGCAAAAATGT
Found at i:22477220 original size:29 final size:30
Alignment explanation
Indices: 22477163--22477220 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
22477153 TTTCAGTTTT
* ***
22477163 GGGGCAAAAATGTAATTTTTGACTTTTACG
1 GGGGCAAAAATGTAATATTTGAAAATTACG
22477193 GGGGCAAAAATGTAA-ATTTGAAAATTAC
1 GGGGCAAAAATGTAATATTTGAAAATTAC
22477221 TCCACCAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATATTTGAAAATTACG
Found at i:22491147 original size:169 final size:169
Alignment explanation
Indices: 22490664--22492026 Score: 1063
Period size: 169 Copynumber: 8.0 Consensus size: 169
22490654 GGGATGCCAC
* * * *
22490664 AAATTCAATTTTAAATCATTTATAA-AGTTATGAAACCACTTAAAGCAAGTAAC-ATGGCATTT-
1 AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTA-GGC-TTTC
* * *** * *
22490726 GAAGGGATGAGTGACTATAAATGGACTTTTCTTGTCAAGGGATGGCTTTTATTTCACATTTCCCA
62 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA
* ** * *
22490791 CTGCAAACATGAAATTATGATCTATTTTAACTAAAAATGGAAA
127 ATGCAAACATTCAATTATGATCTATTTTAACCAAAAATGAAAA
* * * * * * * ** *
22490834 GAAGTACA-ATATAACTCACTCATAAGATTATAAAACTATTTAAAATGAGTAACTAGGCTGTCGA
1 AAATTA-ATTTA-AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGA
* * * * * *
22490898 AGACATGAGTGACTATAAATGGACTATTCTTGTCAATGGATAGCATTCGCTTCACATTTCGCAAT
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAT
* *
22490963 GCAAATATCCAATTATGATCTATTTTAACCAAAAATGAAAA
129 GCAAACATTCAATTATGATCTATTTTAACCAAAAATGAAAA
* * * * * * *
22491004 AAATTGATTTAAAATAATTTATAAGACTATAAAACCATTTAAAGTGAGTAATTGGGCTTCCGAAG
1 AAATTAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAG
* * * * * * *
22491069 GTATAAGTTACTATAGATGGACTTTTCTTATCTATGGATGGC-TTCGGCTTCATGTTTCTCAATG
66 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCAATG
** *
22491133 GGAACATTCAATTATGATTCT-TTTTAACCAGAAATGAAAAA
130 CAAACATTCAATTATGA-TCTATTTTAACCAAAAATG-AAAA
* * * * * * *
22491174 CAAATTCAACTTAAAACCATCTATAA-AGTTAT-AAACCACTTAAAGCGAATGATTAGGCTTTCG
1 -AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCG
* * * * * * * *
22491237 AAAGCATGAGTAACAATAAATGAACTTTTCTTGTCAATGGATGGCTTACGATTCATGTTTCCCAA
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
* * * *
22491302 TGCAAACATTCAATGATGATTTGTTTTAACAAAAAATGGAAAA
128 TGCAAACATTCAATTATGATCTATTTTAACCAAAAAT-GAAAA
* * * * * * * * * * * * *
22491345 GAAGTACAATTTGAACTCATTCATAAGATTATAAAACTATTTAAAACAATTAACTACGCCTCCAA
1 -AAAT-TAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGA
* * * *
22491410 AGGCATGAGTGACTATAAATGAACTTTTC-T-TCAATGGATGACATTCTCTTCACGTTTCTCAAT
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAT
* * * * * *
22491473 GCCAATATCCAATTAAGATCCATTTTAACAAAAAATGAAAA
129 GCAAACATTCAATTATGATCTATTTTAACCAAAAATGAAAA
* * * * * *
22491514 AAATTCAATTCAAAATCATTTATAA-AGTTTTAAAACCACTTAAAGCGAGTAACAAGGTTTTTGA
1 AAATT-AATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGA
** * * * * * * *
22491578 AACCATGAGCGACTATAAATGGACTTTTCTTGTTAAT-GAGTGGCTTTCACTACATGTATCTCGA
64 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCACGTTTCTCAA
** * * **
22491642 TGTGAACATCCAATTATGATCTATTGT-ACTCAAAGCT-AAAA
128 TGCAAACATTCAATTATGATCTATTTTAAC-CAAAAATGAAAA
* * * * *
22491683 AACATTTTGATTTAAAATCATTTATAAGACTAAAAAACCATTTAAAGCGAGTAACTAGACTTTTG
1 AA-A--TTAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCG
* * * * * **
22491748 AAGGGATGAGT-AGCTATAAATGGATTTTTCTTGTCAATAGACGGCTTTCGGTTCACGTTTCTTG
63 AAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA
* * * * *
22491812 ATGCGAACATTCAATTATGATTTGTTTTTACTAAAAATGAAAA
127 ATGCAAACATTCAATTATGATCTATTTTAACCAAAAATGAAAA
** * * * * *
22491855 AAAAAAACTTAAAATCATTTATAATG-TTATAAAAGCACTTAAAGTGAGTAACAAGG-TGATT-G
1 AAATTAATTTAAAATCATTTATAA-GATTATAAAACCATTTAAAGCGAGTAACTAGGCT--TTCG
* * *
22491917 AAGGCAAGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCCCAA
63 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
* *
22491982 TGCAAACA-TCAAATTATAATCTGTTTTAACCAAAAATGAAAA
128 TGCAAACATTC-AATTATGATCTATTTTAACCAAAAATGAAAA
22492024 AAA
1 AAA
22492027 AGTACAATTC
Statistics
Matches: 930, Mismatches: 226, Indels: 75
0.76 0.18 0.06
Matches are distributed among these distances:
167 1 0.00
168 73 0.08
169 270 0.29
170 249 0.27
171 256 0.28
172 81 0.09
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (169 bp):
AAATTAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAG
GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGC
AAACATTCAATTATGATCTATTTTAACCAAAAATGAAAA
Found at i:22491339 original size:340 final size:340
Alignment explanation
Indices: 22490671--22492026 Score: 1117
Period size: 340 Copynumber: 4.0 Consensus size: 340
22490661 CACAAATTCA
* * * * * * *
22490671 ATTTTAAATCATTTATAA-AGTTATGAAACCACTTAAAGCAAGTAAC-ATGGCATT-TGAAGGGA
1 ATTTAAAATCATTTATAAGA-CTATAAAACCATTTAAAGCGAGTAACTA-GGC-TTCCGAAGGCA
* * **** * * * *
22490733 TGAGTGACTATAAATGGACTTTTCTTGTCAAGGGATGGC-TTTTATTTCACATTTCCCACTGCAA
63 TGAGTTACTATAAATGGACTTTTCTT-TCAATGGATGGCATTCGGCTTCACGTTTCTCAATGCGA
** * * * * * * * *
22490797 ACATGAAATTATGA-TCTATTTTAACTAAAAATGGAAAGAAGTACAA--TATAACTCACTCAT-A
127 ACATTCAATTATGATTCT-TTTTAACAAAAAATGAAAAAAAATTCAACTTA-AAATCATTTATAA
* * ** * *
22490858 AGATTATAAAACTATTTAAAATGAGTAACTAGGCTGTCG-AAGACATGAGTGACTATAAATGGAC
190 AG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAG-CATGAGTGACTATAAATGGAC
* * * * * * *
22490922 TATTCTTGTCAATGGATAGCATTCGCTTCACATTTCGCAATGCAAATATCCAATTATGATCTATT
253 TTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCCAATGCAAACATCCAATTATGATCTATT
22490987 TTAACCAAAAATGAAAAAAATTG
318 TTAACCAAAAATGAAAAAAATTG
* * * * * *
22491010 ATTTAAAATAATTTATAAGACTATAAAACCATTTAAAGTGAGTAATTGGGCTTCCGAAGGTATAA
1 ATTTAAAATCATTTATAAGACTATAAAACCATTTAAAGCGAGTAACTAGGCTTCCGAAGGCATGA
* * * *
22491075 GTTACTATAGATGGACTTTTCTTATCTATGGATGGC-TTCGGCTTCATGTTTCTCAATGGGAACA
66 GTTACTATAAATGGACTTTTCTT-TCAATGGATGGCATTCGGCTTCACGTTTCTCAATGCGAACA
* * * *
22491139 TTCAATTATGATTCTTTTTAACCAGAAATGAAAAACAAATTCAACTTAAAACCATCTATAAAGTT
130 TTCAATTATGATTCTTTTTAACAAAAAATGAAAAA-AAATTCAACTTAAAATCATTTATAAAGTT
* * ** * * *
22491204 AT-AAACCACTTAAAGCGAATGATTAGGCTTTCGAAAGCATGAGTAACAATAAATGAACTTTTCT
194 ATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * *
22491268 TGTCAATGGATGGCTTACGATTCATGTTTCCCAATGCAAACATTCAATGATGATTTGTTTTAACA
259 TGTCAATGGATGGCTTTCGATTCACGTTTCCCAATGCAAACATCCAATTATGATCTATTTTAACC
* **
22491333 AAAAATGGAAAAGAAGTACA
324 AAAAAT-GAAAA-AAAT-TG
* * * * * * * * * * *
22491353 ATTTGAACTCATTCATAAGATTATAAAACTATTTAAAACAATTAACTACGCCTCCAAAGGCATGA
1 ATTTAAAATCATTTATAAGACTATAAAACCATTTAAAGCGAGTAACTAGGCTTCCGAAGGCATGA
* * * * * *
22491418 GTGACTATAAATGAACTTTTC-TTCAATGGATGACATTC-TCTTCACGTTTCTCAATGCCAATAT
66 GTTACTATAAATGGACTTTTCTTTCAATGGATGGCATTCGGCTTCACGTTTCTCAATGCGAACAT
* * * * *
22491481 CCAATTAAGATCCATTTTAACAAAAAATG-AAAAAAATTCAA-TTCAAAATCATTTATAAAGTTT
131 TCAATTATGATTCTTTTTAACAAAAAATGAAAAAAAATTCAACTT-AAAATCATTTATAAAGTTA
* * * *
22491544 TAAAACCACTTAAAGCGAGTAACAAGGTTTTTGAAACCATGAGCGACTATAAATGGACTTTTCTT
195 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * ** *
22491609 GTTAAT-GAGTGGCTTTC-ACTACATGTATCTCGATGTGAACATCCAATTATGATCTATTGT-AC
260 GTCAATGGA-TGGCTTTCGA-TTCACGTTTCCCAATGCAAACATCCAATTATGATCTATTTTAAC
**
22491671 TCAAAGCT-AAAAAACATTTTG
323 -CAAAAATGAAAAAA-A--TTG
* * ** *
22491692 ATTTAAAATCATTTATAAGACTAAAAAACCATTTAAAGCGAGTAACTAGACTTTTGAAGGGATGA
1 ATTTAAAATCATTTATAAGACTATAAAACCATTTAAAGCGAGTAACTAGGCTTCCGAAGGCATGA
* * * * **
22491757 G-TAGCTATAAATGGATTTTTCTTGTCAATAGACGGCTTTCGG-TTCACGTTTCTTGATGCGAAC
66 GTTA-CTATAAATGGACTTTTCTT-TCAATGGATGGCATTCGGCTTCACGTTTCTCAATGCGAAC
* * * *
22491820 ATTCAATTATGATT-TGTTTTTACTAAAAATGAAAAAAAA--AAACTTAAAATCATTTATAATGT
129 ATTCAATTATGATTCT-TTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAAGT
* * * *
22491882 TATAAAAGCACTTAAAGTGAGTAACAAGG-TGATT-GAAGGCAAGAGTGACTATAAATGGACTTT
193 TATAAAACCACTTAAAGCGAGTAACAAGGCT--TTCGAAAGCATGAGTGACTATAAATGGACTTT
* * * * *
22491945 TCTTGTCAATGGATGGCTTTCGCTTTACGTTTCCCAATGCAAACATCAAATTATAATCTGTTTTA
256 TCTTGTCAATGGATGGCTTTCGATTCACGTTTCCCAATGCAAACATCCAATTATGATCTATTTTA
22492010 ACCAAAAATGAAAAAAA
321 ACCAAAAATGAAAAAAA
22492027 AGTACAATTC
Statistics
Matches: 790, Mismatches: 193, Indels: 67
0.75 0.18 0.06
Matches are distributed among these distances:
337 2 0.00
338 9 0.01
339 217 0.27
340 339 0.43
341 138 0.17
342 19 0.02
343 66 0.08
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (340 bp):
ATTTAAAATCATTTATAAGACTATAAAACCATTTAAAGCGAGTAACTAGGCTTCCGAAGGCATGA
GTTACTATAAATGGACTTTTCTTTCAATGGATGGCATTCGGCTTCACGTTTCTCAATGCGAACAT
TCAATTATGATTCTTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAAGTTAT
AAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGGATGGCTTTCGATTCACGTTTCCCAATGCAAACATCCAATTATGATCTATTTTAACCAA
AAATGAAAAAAATTG
Found at i:22491783 original size:511 final size:510
Alignment explanation
Indices: 22490696--22491855 Score: 1234
Period size: 511 Copynumber: 2.3 Consensus size: 510
22490686 TAAAGTTATG
* *
22490696 AAACCACTTAAAGCAAGTAAC-ATGGCATTTGAAGGGATGAGT-GACTATAAATGGACTTTTCTT
1 AAACCACTTAAAGCGAGTAACTA-GGCTTTTGAAGGGATGAGTAG-CTATAAATGGACTTTTCTT
* ** * * ** * *
22490759 GTCAAGGGATGGCTTTTATTTCACATTTCCCACTGCAAACATGAAATTATGATCTATTTTAACTA
64 GTCAATGGATGGCTTCGA-TTCACGTTTCCCAATGCAAACATTCAATTATGATTTGTTTTAACTA
**
22490824 AAAATGG-AAAGAAGTACAATATAACTCACTCATAAGATTATAAAACTATTTAAAATGAGTAACT
128 AAAATGGAAAAGAAGTACAATATAACTCACTCATAAGATTATAAAACTATTTAAAACAAGTAACT
* * * *
22490888 AGGCTGTCGAAGACATGAGTGACTATAAATGGACTATTCTTGTCAATGGATAGCATTCGCTTCAC
193 AGCCTGCCAAAGACATGAGTGACTATAAATGAACTATTCTTGTCAATGGATAGCATTCGCTTCAC
* * * * *
22490953 ATTTCGCAATGCAAATATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAATTGATTTAAAA
258 ATTTCGCAATGCAAATATCCAATTAAGATCCATTTTAACAAAAAATGAAAAAAATTAATTCAAAA
* * *** *** **
22491018 TAATTTATAAGACTATAAAACCATTTAAAGTGAGTAATTGGGCTTCCGAAGGTATAAGTTACTAT
323 TAATTTATAAGACTATAAAACCACTTAAAGCGAGTAACAAGGCTTCCGAAACCATAAGCGACTAT
* * * * *
22491083 AGATGGACTTTTCTTATCTATGGATGGCTTCGGCTTCATGTTTCTCAATGGGAACATTCAATTAT
388 AAATGGACTTTTCTTATCTATGGATGGCTTCGACTACATGTATCTCAATGGGAACATCCAATTAT
* * * * *
22491148 GATTCTTTTTAACCAGAAATGAAAAACAAATTCAACTTAAAACCATCTATAAAGTTAT
453 GATTCTTTGTAACCAGAAATAAAAAACAAATTCAACTTAAAACCATCTATAAACTAAA
* * * * * * * * *
22491206 AAACCACTTAAAGCGAATGATTAGGCTTTCGAAAGCATGAGTAACAATAAATGAACTTTTCTTGT
1 AAACCACTTAAAGCGAGTAACTAGGCTTTTGAAGGGATGAGTAGCTATAAATGGACTTTTCTTGT
* * *
22491271 CAATGGATGGCTTACGATTCATGTTTCCCAATGCAAACATTCAATGATGATTTGTTTTAACAAAA
66 CAATGGATGGCTT-CGATTCACGTTTCCCAATGCAAACATTCAATTATGATTTGTTTTAACTAAA
* * *
22491336 AATGGAAAAGAAGTACAATTTGAACTCATTCATAAGATTATAAAACTATTTAAAACAATTAACTA
130 AATGGAAAAGAAGTACAATAT-AACTCACTCATAAGATTATAAAACTATTTAAAACAAGTAACTA
* * *
22491401 CGCCT-CCAAAGGCATGAGTGACTATAAATGAACTTTTC-T-TCAATGGAT-GACATTCTCTTCA
194 -GCCTGCCAAAGACATGAGTGACTATAAATGAACTATTCTTGTCAATGGATAG-CATTCGCTTCA
* * *
22491462 CGTTTCTCAATGCCAATATCCAATTAAGATCCATTTTAACAAAAAATGAAAAAAATTCAATTCAA
257 CATTTCGCAATGCAAATATCCAATTAAGATCCATTTTAACAAAAAATGAAAAAAATT-AATTCAA
* * * * ** *
22491527 AATCATTTATAA-AGTTTTAAAACCACTTAAAGCGAGTAACAAGGTTTTTGAAACCATGAGCGAC
321 AATAATTTATAAGA-CTATAAAACCACTTAAAGCGAGTAACAAGGCTTCCGAAACCATAAGCGAC
* * *
22491591 TATAAATGGACTTTTCTTGT-TAAT-GAGTGGCTTTC-ACTACATGTATCTCGATGTGAACATCC
385 TATAAATGGACTTTTCTTATCT-ATGGA-TGGC-TTCGACTACATGTATCTCAATGGGAACATCC
* * ** * * *
22491653 AATTATGA-TCTATTGT-ACTCA-AAGCTAAAAAAC-ATTTTGATTTAAAATCATTTATAAGACT
447 AATTATGATTCT-TTGTAAC-CAGAA-ATAAAAAACAAATTCAACTTAAAACCATCTATAA-ACT
22491714 AAA
508 AAA
* * *
22491717 AAACCATTTAAAGCGAGTAACTAGACTTTTGAAGGGATGAGTAGCTATAAATGGATTTTTCTTGT
1 AAACCACTTAAAGCGAGTAACTAGGCTTTTGAAGGGATGAGTAGCTATAAATGGACTTTTCTTGT
* * * *** * *
22491782 CAATAGACGGCTTTCGGTTCACGTTTCTTGATGCGAACATTCAATTATGATTTGTTTTTACTAAA
66 CAATGGATGGC-TTCGATTCACGTTTCCCAATGCAAACATTCAATTATGATTTGTTTTAACTAAA
*
22491847 AATGAAAAA
130 AATGGAAAA
22491856 AAAAAACTTA
Statistics
Matches: 529, Mismatches: 104, Indels: 33
0.79 0.16 0.05
Matches are distributed among these distances:
509 1 0.00
510 206 0.39
511 247 0.47
512 72 0.14
513 3 0.01
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (510 bp):
AAACCACTTAAAGCGAGTAACTAGGCTTTTGAAGGGATGAGTAGCTATAAATGGACTTTTCTTGT
CAATGGATGGCTTCGATTCACGTTTCCCAATGCAAACATTCAATTATGATTTGTTTTAACTAAAA
ATGGAAAAGAAGTACAATATAACTCACTCATAAGATTATAAAACTATTTAAAACAAGTAACTAGC
CTGCCAAAGACATGAGTGACTATAAATGAACTATTCTTGTCAATGGATAGCATTCGCTTCACATT
TCGCAATGCAAATATCCAATTAAGATCCATTTTAACAAAAAATGAAAAAAATTAATTCAAAATAA
TTTATAAGACTATAAAACCACTTAAAGCGAGTAACAAGGCTTCCGAAACCATAAGCGACTATAAA
TGGACTTTTCTTATCTATGGATGGCTTCGACTACATGTATCTCAATGGGAACATCCAATTATGAT
TCTTTGTAACCAGAAATAAAAAACAAATTCAACTTAAAACCATCTATAAACTAAA
Found at i:22492176 original size:125 final size:125
Alignment explanation
Indices: 22491945--22492184 Score: 295
Period size: 125 Copynumber: 1.9 Consensus size: 125
22491935 AATGGACTTT
** *
22491945 TCTTGTCAATGGATGGCTTTCGCTTTACGTTTCCCAATGCAAACATCAAATTATAATCTGTTTTA
1 TCTTGTCAATGGATGGCTTTCGCTGCACGTTTCCCAATGCAAACATCAAATTATAATATGTTTTA
* * * *
22492010 ACCAAAAATGAAAAAAAAGTACAATTCAACTCATTCTTAAGATTATAAAACTAATTATAA
66 ACCAAAAATGAAAAAAAAGTACAATTAAAATAATTCTTAAGACTATAAAACTAATTATAA
* * * * * * *
22492070 TCTTGTCAATGGGTGGCTTTTGGTGCATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTT
1 TCTTGTCAATGGATGGCTTTCGCTGCACGTTTCCCAATGCAAACATCAAATTATAATATGTTTTA
* * *
22492135 ACCAAAAATGAAAGAAAA-TTCTATTTAAAATAATT-TATAAGACTATAAAA
66 ACCAAAAATGAAAAAAAAGTAC-AATTAAAATAATTCT-TAAGACTATAAAA
22492185 TCATTTAAAG
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
124 3 0.03
125 93 0.97
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.35
Consensus pattern (125 bp):
TCTTGTCAATGGATGGCTTTCGCTGCACGTTTCCCAATGCAAACATCAAATTATAATATGTTTTA
ACCAAAAATGAAAAAAAAGTACAATTAAAATAATTCTTAAGACTATAAAACTAATTATAA
Found at i:22492650 original size:635 final size:632
Alignment explanation
Indices: 22491503--22492657 Score: 1443
Period size: 635 Copynumber: 1.8 Consensus size: 632
22491493 CATTTTAACA
* * *
22491503 AAAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTTTTAAAACCACTTAAAGCGAGTAACA
1 AAAAATGAAAAAAATTCAATTCAAAATAATTTATAAAGCTATAAAACCACTTAAAGCGAGTAACA
* * * * * *
22491568 AGGTTTTTGAAACCATGAGCGACTATAAATGGACTTTTCTTGTTAATGAGTGGCTTTCACTACAT
66 AGGTCTTTGAAACCAAGAGCGACTATAAATAGACTTTTCTTGTCAATGAGTGGCTTTCACAACAC
** * * **
22491633 GTATCTCGATGTGAACATCCAATTATGATCTATTGTACTCAAAGCTAAAAAACATTTTGATTTAA
131 GTATCTCGATGCAAACATCAAATTATGATCTATTGTAATCAAAGCTAAAAAACATTTCAATTTAA
* *
22491698 AATCATTTATAAGACTAAAAAACCATTTAAAGCGAGTAACTAGACTTTTGAAGGGATGAGTAGCT
196 AATCATTTATAAGAATAAAAAACCATTTAAAGCGACTAACTAGACTTTTGAAGGGATGAGTAGCT
* * ** * * *
22491763 ATAAATGGATTTTTCTTGTCAATAGACGGCTTTCGGTTCACGTTTCTTGATGCGAACATTCAATT
261 ATAAATAGACTTTTCTTGTCAATAGACAACTTTCGGTTCACGTTTCCTGATGCAAACATCCAATT
* * * * *
22491828 ATGATTTGTTTTTACTAAAAATGAAAAAAAAAAACTTAAAATCATTTATAATGTTATAAAAGCAC
326 ATGATCTGCTTTTACCAAAAA-GAAAAAAAAAAACTTAAAATCATTTATAAAGTTATAAAACCAC
* *
22491893 TTAAAGTGAGTAACAAGGTGATTGAAGGCAAGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
390 TTAAAGAGAGTAACAAGGT-ATTGAAAGCAAGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
* * ** *
22491958 TGGCTTTCGCTTTACGTTTCCCAATGCAAACATCAAATTATAATCTGTTTTAACCAAAAATGAAA
454 TGACTTTCACTACACGTTTCCCAATGCAAACATCAAATTATAATATGTTTTAACCAAAAAT-AAA
22492023 AAAAAGTACAATTCAACTCATTCTTAAGATTATAAAACTAATTATAATCTTGTCAATGGGTGGCT
518 AAAAAGTACAATTCAACTCATTCTTAAGATTATAAAACTAATTATAATCTTGTCAATGGGTGGCT
22492088 TTTGGTGCATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTTACC
583 TTTGGTGCATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTTACC
* * * *
22492138 AAAAATGAAAGAAAATTCTATTTAAAATAATTTAT-AAGACTATAAAATCATTTAAAGCGAGTAA
1 AAAAATGAAA-AAAATTCAATTCAAAATAATTTATAAAG-CTATAAAACCACTTAAAGCGAGTAA
* ** *
22492202 CTAGG-CTTTGAAGTCAAGAGTGACTATAAATAGACTTTTCTTGTCAATGTA-TGGCTTTCACAA
64 CAAGGTCTTTGAAACCAAGAGCGACTATAAATAGACTTTTCTTGTCAATG-AGTGGCTTTCACAA
* * * *
22492265 CACGT-TTTCCTATGCAAACATCAAATTATGATCTATTTTAATGAAA-CATTAAAAAAACA-TTC
128 CACGTATCT-CGATGCAAACATCAAATTATGATCTATTGTAATCAAAGC--T-AAAAAACATTTC
* * * ** * *
22492327 AATTTAAACTCATTTATAA-AATAATAAAACTATTTAAAGTGACTGGCTAGGCTTTTGAAGGTAT
189 AATTTAAAATCATTTATAAGAATAA-AAAACCATTTAAAGCGACTAACTAGACTTTTGAAGGGAT
* * * * *
22492391 GAGT-GATTATAAATAGACTTTTCTTGTCAATGGATAACTTTTGTTTCACGTTTCCTGATGCAAA
253 GAGTAG-CTATAAATAGACTTTTCTTGTCAATAGACAACTTTCGGTTCACGTTTCCTGATGCAAA
*** *
22492455 CATCCAATTATGATCT-CTTTTACCCAAAAA-AAAAAATTTAATTTAAAATCATTTATAAAGTTA
317 CATCCAATTATGATCTGCTTTTA-CCAAAAAGAAAAAAAAAAACTTAAAATCATTTATAAAGTTA
*
22492518 TAAAACCACTTAAAGAGAGTAACAAGGCT-TTCGAAAAAG-ATGAGTGACTATAAATGGACTTTT
381 TAAAACCACTTAAAGAGAGTAACAAGG-TATT-G--AAAGCAAGAGTGACTATAAATGGACTTTT
* * * * *
22492581 CTTGTCAATGGGTTACTTTCACTACATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTAA
442 CTTGTCAATGGATGACTTTCACTACACGTTTCCCAATGCAAACATCAAATTATAATATGTTTTAA
22492646 CCAAAAATAAAA
507 CCAAAAATAAAA
22492658 GAAATTTTGA
Statistics
Matches: 436, Mismatches: 70, Indels: 29
0.81 0.13 0.05
Matches are distributed among these distances:
633 2 0.00
634 61 0.14
635 192 0.44
636 173 0.40
637 8 0.02
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (632 bp):
AAAAATGAAAAAAATTCAATTCAAAATAATTTATAAAGCTATAAAACCACTTAAAGCGAGTAACA
AGGTCTTTGAAACCAAGAGCGACTATAAATAGACTTTTCTTGTCAATGAGTGGCTTTCACAACAC
GTATCTCGATGCAAACATCAAATTATGATCTATTGTAATCAAAGCTAAAAAACATTTCAATTTAA
AATCATTTATAAGAATAAAAAACCATTTAAAGCGACTAACTAGACTTTTGAAGGGATGAGTAGCT
ATAAATAGACTTTTCTTGTCAATAGACAACTTTCGGTTCACGTTTCCTGATGCAAACATCCAATT
ATGATCTGCTTTTACCAAAAAGAAAAAAAAAAACTTAAAATCATTTATAAAGTTATAAAACCACT
TAAAGAGAGTAACAAGGTATTGAAAGCAAGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
ACTTTCACTACACGTTTCCCAATGCAAACATCAAATTATAATATGTTTTAACCAAAAATAAAAAA
AAGTACAATTCAACTCATTCTTAAGATTATAAAACTAATTATAATCTTGTCAATGGGTGGCTTTT
GGTGCATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTTACC
Found at i:22492865 original size:171 final size:170
Alignment explanation
Indices: 22492070--22493456 Score: 1242
Period size: 171 Copynumber: 8.1 Consensus size: 170
22492060 CTAATTATAA
* * * * * * *
22492070 TCTTGTCAATGGGTGGCTTTTGGTGCATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTT
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTA
* * * *
22492135 ACCAAAAATGAAAGAAAATTCTATTTAAAATAATTTATAAGACTATAAAATCATTTAAAGCGAGT
66 ACCAAAAATGAAAAAAAATTCTATTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGT
*
22492200 AACTAGGCTTT-GAAGTCAAGAGTGACTATAAATAGACTTT
130 AACTAGGCTTTCGAAGTCATGAGTGACTATAAATAGACTTT
* ** ** * *
22492240 TCTTGTCAATGTATGGCTTTCACAACACGTTTTCCT-ATGCAAACATCAAATTATGATCTATTTT
1 TCTTGTCAATGGATGGCTTTTGCTTCACG-TTTCCTAATGCAAACATCCAATTATGATCTGTTTT
** * * * * * * *
22492304 AATGAAACATTAAAAAAACATTCAATTTAAACTCATTTATAAAATAATAAAACTATTTAAAGTGA
65 AACCAAAAATGAAAAAAA-ATTCTATTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGA
* ** * *
22492369 CTGGCTAGGCTTTTGAAGGT-ATGAGTGATTATAAATAGACTTT
128 GTAACTAGGCTTTCGAA-GTCATGAGTGACTATAAATAGACTTT
** * * *
22492412 TCTTGTCAATGGATAACTTTTGTTTCACGTTTCCTGATGCAAACATCCAATTATGATCTCTTTT-
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTA
* * *
22492476 ACC-CAAA--AAAAAAAATT-TAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGAGAG
66 ACCAAAAATGAAAAAAAATTCT-ATTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAG
* *** *
22492537 TAACAAGGCTTTCGAAAAAGATGAGTGACTATAAATGGACTTT
129 TAACTAGGCTTTCG-AAGTCATGAGTGACTATAAATAGACTTT
* ** ** * * * *
22492580 TCTTGTCAATGGGTTACTTTCACTACATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTA
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTA
* * * * * * *
22492645 ACCAAAAAT-AAAAGAAATTTTGATTTAAAATAATTGATAAGAATATAAAATCATTTAAAGTGAG
66 ACCAAAAATGAAAAAAAATTCT-ATTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAG
* *
22492709 TAACTAGGCTTTCGAAGTCATGAGTCACTATAAATGGACTTTT
129 TAACTAGGCTTTCGAAGTCATGAGTGACTATAAATAGAC-TTT
* * * * * * * *
22492752 TCTTATCAATGGATGG-TTTGGCTTCACGTGTCCTAATCCGAACATTCAATTATGATTTGATTTA
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTA
* * ** *
22492816 AGCAAAGATGAAAAAAAATTCTATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAAAGC
66 ACCAAAAATGAAAAAAAATTCTATTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGT
* *
22492881 AACTAGGCTTTCGAAGGT-ATTAGTGACTATAAATGGACTTT
130 AACTAGGCTTTCGAA-GTCATGAGTGACTATAAATAGACTTT
* * * * ***
22492922 TCTTGTTAATGGATGGTTTTTGCTTCATGTTT-CTCAATGCGAACATTTGATTATGATCTGTTTT
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCAAACATCCAATTATGATCTGTTTT
* * * * * * * *
22492986 AACCAAAAATGTAAAAAAATTCAATTTAAAATCCTTTATAAACTTTTATAACAACTTAACGCGAG
65 AACCAAAAATGAAAAAAAATTCTATTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAG
* * *
22493051 TAACTAGGTTTTTGAA-TGCATGAGCGACTATAAATAGACTTT
129 TAACTAGGCTTTCGAAGT-CATGAGTGACTATAAATAGACTTT
* * * * *
22493093 TCTTGTCTATGGATGGCTTTTGCTTCACATTTCCTGAA-GCAAACATCCAAGTATCATTTGTTTT
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCAAACATCCAATTATGATCTGTTTT
* * * * **
22493157 AACAAAAAATGAACAGAAAATTCAATTCAAAATCATTTATAAACTTATAAAACCCCTTAAAGCGA
65 AACCAAAAATGAA-AAAAAATTCTATTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGA
* * * *
22493222 GTAACAAGGCTTTTGAAGCCATGAGTGACTATAAATCGACTTT
128 GTAACTAGGCTTTCGAAGTCATGAGTGACTATAAATAGACTTT
* * * * * * * *
22493265 TCTTGTCAATGAATGACTATCGCTTCACGTTTCTCT-ATGAAAACATCAAATTATGATCAGTTTG
1 TCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CTAATGCAAACATCCAATTATGATCTGTTTT
* * * * * * * *
22493329 AACCAAAAAT-TAGAAACATTCAATTTTAATATTATTTATCATATTATAAAA-CATTTAAAGCAA
65 AACCAAAAATGAAAAAAAATTCTA-TTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGA
** * * * *
22493392 ACATCTAGGCTTTCGAAGGCGTAAGTGACTATAAATAGACTTT
128 GTAACTAGGCTTTCGAAGTCATGAGTGACTATAAATAGACTTT
*
22493435 TCTTGTCAATGGATTGCTTTTG
1 TCTTGTCAATGGATGGCTTTTG
22493457 TCAAGCCCGA
Statistics
Matches: 979, Mismatches: 208, Indels: 60
0.79 0.17 0.05
Matches are distributed among these distances:
166 3 0.00
167 45 0.05
168 83 0.08
169 4 0.00
170 151 0.15
171 399 0.41
172 289 0.30
173 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (170 bp):
TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTA
ACCAAAAATGAAAAAAAATTCTATTTAAAATCATTTATAAATTATAAAACCATTTAAAGCGAGTA
ACTAGGCTTTCGAAGTCATGAGTGACTATAAATAGACTTT
Found at i:22494173 original size:21 final size:22
Alignment explanation
Indices: 22494148--22494188 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22494138 CCTAGGTAGA
*
22494148 AAAATTGAAGGAAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
22494169 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
22494189 AAAAAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.54, C:0.05, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:22494194 original size:22 final size:21
Alignment explanation
Indices: 22494147--22494194 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
22494137 CCCTAGGTAG
* *
22494147 AAAAATTGAAGGAAAAAGTGT
1 AAAAATTCAAGGAAAAAGTGA
*
22494168 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAAGGAAA-AAGTGA
22494190 AAAAA
1 AAAAA
22494195 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.60, C:0.04, G:0.21, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGGAAAAAGTGA
Found at i:22496068 original size:171 final size:171
Alignment explanation
Indices: 22495628--22496892 Score: 1213
Period size: 171 Copynumber: 7.4 Consensus size: 171
22495618 TGGCACGAGC
** * * *
22495628 CAAGGCATTCGAAGATATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * *
22495693 ATGTTTCCTAATGCAAACA-TCAAATTATGATGTGTTTTAACAAAAAATGAAAAAAAAATCTGAT
66 ATGTTTCCTAATGCAAACATTC-AATTATGATCTGTTTTAACCAAAAATGAAAGAAAAATC-AAT
* * **
22495757 TTAAAATAATTTA-AAAGACTATAAAACCATTTAAAGTGAGTAA
129 TTAAAATAATTTATAAAG-TTATAAAACCACTTAAAGCAAGTAA
* * * * * * *
22495800 CTAGGCTTTCGAAGGCATGAGTGACTATAAAAGGACTTTTCTTATCAGTGGATGGCTTTCGCTTT
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * * * * *
22495865 AGGTTTCCCAATGCGAACATTCAATTATGATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTT
66 ATGTTTCCTAATGCAAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAGAAAAATCAATTT
* *
22495930 AAAATCATTTATAAAGTTATAAATCCACTTAAAGCAAGTAA
131 AAAATAATTTATAAAGTTATAAAACCACTTAAAGCAAGTAA
* * * * * * * *
22495971 CAAGGCCTTC-AATGGTATAAGTGACTATCAATTGACTTTTCTTATCAATGGACGACTTTTGCTT
1 CAAGGCATTCGAA-GGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
** * * * *
22496035 CACATTT-CTCAATGCAAATATCCAATGATGATCTGTTTTGACCAAAAAT-AAA-AAAAATCAAT
65 CATGTTTCCT-AATGCAAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAGAAAAATCAAT
* * *
22496097 TTAAAAATGATTTATATAGTTATAAAACCACTT--AGCATGAGTGA
129 TT-AAAATAATTTATAAAGTTATAAAACCACTTAAAGCA--AGTAA
* * *
22496141 CAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTTGCTTC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * ** * *
22496206 TTGTTTCCAAATGTGAACATTCAATTATGATCTGTTTTAACCAAAAATTAAA-AAAAATC-AGTT
66 ATGTTTCCTAATGCAAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAGAAAAATCAATTT
* *
22496269 CAAATAATTTATAAAGTTATGAAACCA-TTCAAAGCAAGTAA
131 AAAATAATTTATAAAGTTATAAAACCACTT-AAAGCAAGTAA
* * **
22496310 CAAGGCCTTTGAAGGCATAAGTGACTATAAATATACTTTTCTTGTCAATGGATGGCTTTCGCTTC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
** * * * * *
22496375 ACATTTCCTGATGCGAACATTCAATTATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATTT
66 ATGTTTCCTAATGCAAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAGAAAAATCAATTT
* * *
22496440 AAAATTATTTATAAAGTTATAAAATCACTTAAAGCGAGTAA
131 AAAATAATTTATAAAGTTATAAAACCACTTAAAGCAAGTAA
** ** *
22496481 CTTGGGTTTC-AAGGGCATAAGTGAC-ATAAAATGGACTTTTCTTCTCAATGGATGGCTTTCG-T
1 CAAGGCATTCGAA-GGCATAAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT
* * * * *
22496543 CTCATGTTTCTTGATGCAAA-ATTCAGTTATGATCTGTTTCAACCAAAAATG--AGAAAATGTTC
64 -TCATGTTTCCTAATGCAAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAGAAAA--ATC
* * **** *
22496605 AATTTAAAATCATTTATTAAGTTATAAAACCACTTAAAATGGGTGA
126 AATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAGCAAGTAA
* * * * *
22496651 CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTTGCTAC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * * **
22496716 ATGTTTCCCAATGCAAACA-TCAAATTATCATGTGTTTTAA-CAAAAATGAAA-ACAAATTTTGA
66 ATGTTTCCTAATGCAAACATTC-AATTATGATCTGTTTTAACCAAAAATGAAAGA-AAA-ATCAA
* * * **
22496778 TTTAAAATAGTTTAT-AAGACTATAAAACCATTTAAAGTGAGTAA
128 TTTAAAATAATTTATAAAG-TTATAAAACCACTTAAAGCAAGTAA
* * * * * * * *
22496822 CTAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTCTCAATAGATGGCTTTCACTTC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
22496887 ATGTTT
66 ATGTTT
22496893 TTTGATGTGA
Statistics
Matches: 901, Mismatches: 162, Indels: 61
0.80 0.14 0.05
Matches are distributed among these distances:
168 12 0.01
169 139 0.15
170 282 0.31
171 353 0.39
172 113 0.13
173 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (171 bp):
CAAGGCATTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
ATGTTTCCTAATGCAAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAGAAAAATCAATTT
AAAATAATTTATAAAGTTATAAAACCACTTAAAGCAAGTAA
Found at i:22496630 original size:510 final size:511
Alignment explanation
Indices: 22495628--22496887 Score: 1619
Period size: 510 Copynumber: 2.5 Consensus size: 511
22495618 TGGCACGAGC
** *
22495628 CAAGGCATTCGAAGATATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
1 CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTAC
* *
22495693 ATGTTTCCTAATGCAAACATCAAATTATGATGTGTTTTAACAAAAAATGAAAAAAAAATCTGATT
66 ATGTTTCCAAATGCAAACATCAAATTATGATGTGTTTTAACCAAAAAT-AAAAAAAAATC--ATT
22495758 TAAAATAATTTA-AAAGACTATAAAACCATTTAAAGTGAGTAACTAGG-CTTTCGAAGGCATGAG
128 TAAAATAATTTATAAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCCTTT-GAAGGCATGAG
* * **
22495821 TGACTATAAA-AGGACTTTTCTTATCAGTGGATGGCTTTCGCTTTAGGTTTCCCAATGCGAACAT
192 TGACTATAAATA-GACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCCAATGCGAACAT
* * * *
22495885 TCAATTATGATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTAT
256 TCAATTATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATTTAAAATCATTTATAAAGTTAT
* * * *
22495950 AAATCCACTTAAAGCAAGTAACAAGGCCTTCAATGGTATAAGTGACTATCAATTGACTTTTCTTA
321 AAATCCACTTAAAGCAAGTAACAAGGCCTTCAAGGGCATAAGTGACTATAAATGGACTTTTCTTA
* **
22496015 TCAATGGACGACTTTTGCTTCACATTTCTCAATGCAAATATCCAATGATGATCTGTTTTGACCAA
386 TCAATGGACGACTTTCGCTTCACATTTCTCAATGCAAATATCCAATGATGATCTGTTTCAACCAA
* **
22496080 AAATAAAAAAAATCAATTTAAAAATGATTTATATAGTTATAAAACCACTTAGCATGAGTGA
451 AAATAAAAAAAATCAATTTAAAAATCATTTATATAGTTATAAAACCACTTAAAATGAGTGA
* * *
22496141 CAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTTGCTTC
1 CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTAC
* ** * * * *
22496206 TTGTTTCCAAATGTGAACATTC-AATTATGATCTGTTTTAACCAAAAATTAAAAAAAATCAGTTC
66 ATGTTTCCAAATGCAAACA-TCAAATTATGATGTGTTTTAACCAAAAATAAAAAAAAATCATTTA
* * * ** * *
22496270 AAATAATTTATAAAG-TTATGAAACCATTCAAAGCAAGTAACAAGGCCTTTGAAGGCATAAGTGA
130 AAATAATTTATAAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCCTTTGAAGGCATGAGTGA
* * **
22496334 CTATAAATATACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCTGATGCGAACATTCAA
195 CTATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCCAATGCGAACATTCAA
*
22496399 TTATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATTTAAAATTATTTATAAAGTTATAAAA
260 TTATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATTTAAAATCATTTATAAAGTTAT-AAA
* ** ** *
22496464 T-CACTTAAAGCGAGTAACTTGGGTTTCAAGGGCATAAGTGAC-ATAAAATGGACTTTTCTTCTC
324 TCCACTTAAAGCAAGTAACAAGGCCTTCAAGGGCATAAGTGACTAT-AAATGGACTTTTCTTATC
* * ** ** * * *
22496527 AATGGATGGCTTTCG-TCTCATGTTTCTTGATGCAAA-ATTCAGTTATGATCTGTTTCAACCAAA
388 AATGGACGACTTTCGCT-TCACATTTCTCAATGCAAATATCCAATGATGATCTGTTTCAACCAAA
*** *
22496590 AATGAGAAAATGTTCAATTT-AAAATCATTTAT-TAAGTTATAAAACCACTTAAAATGGGTGA
452 AAT-A-AAAAAAATCAATTTAAAAATCATTTATAT-AGTTATAAAACCACTTAAAATGAGTGA
*
22496651 CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTTGCTAC
1 CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTAC
* * ** *
22496716 ATGTTTCCCAATGCAAACATCAAATTATCATGTGTTTTAA-CAAAAATGAAAACAAATTTTGATT
66 ATGTTTCCAAATGCAAACATCAAATTATGATGTGTTTTAACCAAAAAT-AAAA-AAA-AATCATT
* *
22496780 TAAAATAGTTTAT-AAGACTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGT
128 TAAAATAATTTATAAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCCTTTGAAGGCATGAGT
* * *
22496844 GACTATAAATAGACTTTTCTTCTCAATAGATGGCTTTCACTTCA
193 GACTATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCA
22496888 TGTTTTTTGA
Statistics
Matches: 639, Mismatches: 93, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
509 38 0.06
510 368 0.58
511 30 0.05
512 103 0.16
513 98 0.15
514 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (511 bp):
CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTAC
ATGTTTCCAAATGCAAACATCAAATTATGATGTGTTTTAACCAAAAATAAAAAAAAATCATTTAA
AATAATTTATAAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCCTTTGAAGGCATGAGTGAC
TATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCCAATGCGAACATTCAAT
TATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATTTAAAATCATTTATAAAGTTATAAATC
CACTTAAAGCAAGTAACAAGGCCTTCAAGGGCATAAGTGACTATAAATGGACTTTTCTTATCAAT
GGACGACTTTCGCTTCACATTTCTCAATGCAAATATCCAATGATGATCTGTTTCAACCAAAAATA
AAAAAAATCAATTTAAAAATCATTTATATAGTTATAAAACCACTTAAAATGAGTGA
Found at i:22496698 original size:341 final size:338
Alignment explanation
Indices: 22495628--22496892 Score: 1308
Period size: 341 Copynumber: 3.7 Consensus size: 338
22495618 TGGCACGAGC
** *
22495628 CAAGGCATTCGAAGATATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
** * * * *
22495693 ATGTTTCCTAATGCAAACATCAAATTATGATGTGTTTTAACAAAAAATGAAAAAAAAATCTGATT
66 ACATTTCCTAATGCAAACATCAAATTATGATCTGTTTTAGCCAAAAATG-AAAAAAAATC-AATT
* * *
22495758 TAAAATAATTTA-AAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGT
129 TAAAATTATTTATAAAGACTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGT
* * * * * *
22495822 GACTATAAAAGGACTTTTCTTATCAGTGGATGGCTTTCGCTTTAGGTTTCCCAATGCGAACATTC
194 GACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGC-AACATTC
* * *
22495887 AATTATGATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAA
258 AATTATGATCTGTTTTAACCAAAAATG--AGAAAATTCAATTTAAAATCATTTATAAAGTTATAA
*
22495952 ATCCACTT-AAAGCAAGTAA
321 AACCACTTAAAAG--AGTAA
* * * * * * * * *
22495971 CAAGGCCTTC-AATGGTATAAGTGACTATCAATTGACTTTTCTTATCAATGGACGACTTTTGCTT
1 CAAGGCATTCGAA-GGCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTA
* * *
22496035 CACATTT-CTCAATGCAAATATCCAATGATGATCTGTTTT-GACCAAAAAT-AAAAAAAATCAAT
65 CACATTTCCT-AATGCAAACATCAAATTATGATCTGTTTTAG-CCAAAAATGAAAAAAAATCAAT
* * * * * *
22496097 TTAAAAATGATTTATATAG-TTATAAAACCACTT--AGCATGAGTGACAAGGCATTCGAAGGCAT
128 TT-AAAATTATTTATAAAGACTATAAAACCACTTAAAGC--GAGTAACTAGGCTTTCGAAGGCAT
* * * * * *
22496159 GAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTTGCTTCTTGTTTCCAAATGTGAAC
190 GAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTTCCTAATG-CAAC
* * * * * *
22496224 ATTCAATTATGATCTGTTTTAACCAAAAATTAAAAAAAATC-AGTTCAAATAATTTATAAAGTTA
254 ATTCAATTATGATCTGTTTTAACCAAAAA-TGAGAAAATTCAATTTAAAATCATTTATAAAGTTA
* *
22496288 TGAAACCA-TTCAAAGCAAGTAA
318 TAAAACCACTTAAAAG--AGTAA
* * * *
22496310 CAAGGCCTTTGAAGGCATAAGTGACTATAAATATACTTTTCTTGTCAATGGATGGCTTTCGCTTC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
* * * *
22496375 ACATTTCCTGATGCGAACATTC-AATTATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATT
66 ACATTTCCTAATGCAAACA-TCAAATTATGATCTGTTTTAGCCAAAAATGAAA-AAAAATCAATT
* * * * *
22496439 TAAAATTATTTATAAAG-TTATAAAATCACTTAAAGCGAGTAACTTGGGTTTC-AAGGGCATAAG
129 TAAAATTATTTATAAAGACTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAA-GGCATGAG
* * *
22496502 TGAC-ATAAAATGGACTTTTCTTCTCAATGGATGGCTTTCG-TCTCATGTTTCTTGATGCAAAAT
193 TGACTAT-AAATGGACTTTTCTTCTCAATGGATGGCTTTCGCT-TCATGTTTCCTAATGCAACAT
* * *
22496565 TCAGTTATGATCTGTTTCAACCAAAAATGAGAAAATGTTCAATTTAAAATCATTTATTAAGTTAT
256 TCAATTATGATCTGTTTTAACCAAAAATGAGAAAA--TTCAATTTAAAATCATTTATAAAGTTAT
* *
22496630 AAAACCACTTAAAATGGGTGA
319 AAAACCACTTAAAA-GAGTAA
* * *
22496651 CAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTTGCTAC
1 CAAGGCATTCGAAGGCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
** * * * * * **
22496716 ATGTTTCCCAATGCAAACATCAAATTATCATGTGTTTTA-ACAAAAATGAAAACAAATTTTGATT
66 ACATTTCCTAATGCAAACATCAAATTATGATCTGTTTTAGCCAAAAATGAAAA-AAA-ATCAATT
* * *
22496780 TAAAA-TAGTTTAT-AAGACTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAG
129 TAAAATTA-TTTATAAAGACTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAG
* * *
22496843 TGACTATAAATAGACTTTTCTTCTCAATAGATGGCTTTCACTTCATGTTT
193 TGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTT
22496893 TTTGATGTGA
Statistics
Matches: 764, Mismatches: 124, Indels: 70
0.80 0.13 0.07
Matches are distributed among these distances:
338 8 0.01
339 162 0.21
340 134 0.18
341 350 0.46
342 21 0.03
343 89 0.12
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (338 bp):
CAAGGCATTCGAAGGCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
ACATTTCCTAATGCAAACATCAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAATCAATTTA
AAATTATTTATAAAGACTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGA
CTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAACATTCAAT
TATGATCTGTTTTAACCAAAAATGAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
CTTAAAAGAGTAA
Found at i:22497097 original size:247 final size:247
Alignment explanation
Indices: 22496656--22497139 Score: 593
Period size: 247 Copynumber: 2.0 Consensus size: 247
22496646 GGTGACAAGG
* * * **
22496656 CATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTTGCTACATGTT
1 CATTCGAAGGCATGAGTGACTATAAATAGACATTTCTTATCAATGGATGGCTTTCACTACATGTT
* * **
22496721 TCCCAATGCAAACATCAAATTATCATGTGTTTTAACAAAAATGAAAACAAATTTTGATTTAAAAT
66 TCCCAATGCAAACATCAAATGATCATATGTTTTAACAAAAATGAAAACAAA-TTCAATTTAAAAT
* * * * *
22496786 AGTTTATAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATA
130 AGTTTATAAGACTATAAAACCATTCAAAATGAGTAACGAGGCTATTCAAGGCATGAGTGACTATA
*
22496851 AATAGACTTTTCTTCTCAATAGATGGCTTTCACTTCATGTTTTTTGATGTGAA
195 AATAGACTTTTCTTCTCAATAGATGGCTTCCACTTCATGTTTTTTGATGTGAA
* *
22496904 CATT-GAAGGCATGAGTGACTATAAATTGACATTTCTTATCAATGGATGGCTTTCACTTCATGTT
1 CATTCGAAGGCATGAGTGACTATAAATAGACATTTCTTATCAATGGATGGCTTTCACTACATGTT
* * * * * *
22496968 TCTCAATGCGAGCATCCAATGATGATATGTTTTAATGAAAAATGTAAAA-AAA-TCAATTTAAAA
66 TCCCAATGCAAACATCAAATGATCATATGTTTTAA-CAAAAATG-AAAACAAATTCAATTTAAAA
* *
22497031 TTA-TTTATATAG-TTATAAAACCACTTCAAAATGAGTAACGAGGC-ATTCAAGGGCATGGGTGA
129 -TAGTTTATA-AGACTATAAAACCA-TTCAAAATGAGTAACGAGGCTATTCAA-GGCATGAGTGA
* * * * *
22497093 CTATAAATGGATTTTTCTTGTGAATAGATGGCTTCCAGTTCATGTTT
190 CTATAAATAGACTTTTCTTCTCAATAGATGGCTTCCACTTCATGTTT
22497140 CCCGATGCCA
Statistics
Matches: 200, Mismatches: 30, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
246 29 0.14
247 153 0.76
248 14 0.07
249 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.35
Consensus pattern (247 bp):
CATTCGAAGGCATGAGTGACTATAAATAGACATTTCTTATCAATGGATGGCTTTCACTACATGTT
TCCCAATGCAAACATCAAATGATCATATGTTTTAACAAAAATGAAAACAAATTCAATTTAAAATA
GTTTATAAGACTATAAAACCATTCAAAATGAGTAACGAGGCTATTCAAGGCATGAGTGACTATAA
ATAGACTTTTCTTCTCAATAGATGGCTTCCACTTCATGTTTTTTGATGTGAA
Found at i:22497307 original size:170 final size:170
Alignment explanation
Indices: 22496908--22500089 Score: 2689
Period size: 171 Copynumber: 18.6 Consensus size: 170
22496898 TGTGAACATT
* * * * * *
22496908 GAAGGCATGAGTGACTATAAATTGACATTTCTTATCAATGGATGGCTTTCACTTCATGTTTCTCA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * * * * *
22496973 ATGCGAGCATCCAATGATGATATGTTTTAA-TGAAAAATGTAAAAAAA-TCAATTTAAAATTATT
66 ATGCAAACATTCAATTATGATCTGTTTTAACT-AGAAATG-AAAAAAATTCAATTTAAAATCATT
* * ** * *
22497036 TATATAGTTATAAAACCACTTCAAAATGAGTAACGAGGCATTC
129 TATAAAGTTATAAAACCA-TTTAAAGCGAGTAACAAGGCTTTC
* * * * * *
22497079 -AAGGGCATGGGTGACTATAAATGGATTTTTCTTGTGAATAGATGGCTTCCAG-TTCATGTTTCC
1 GAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCC
* * * * * * * * * *
22497142 CGATGCCAACATTCAATTATGATATATTTTAATTAGAAATTAAAAAAAATCAGTTCAAAATCGTT
64 CAATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATT
** *
22497207 TATAAAGTTATGCAACCATTTAAAGCGAGTAACAAGGCCTTC
129 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * *
22497249 GAAGGCATGAGTGATTGTAAATGGACATTTCTTGTCAATGGTTGGCTTTCGCTTCATGTTTCCCA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * *
22497314 ATGAAAACATTCAAGTATGATCTGTTTTAACTTGAAATGAAGAAAAATTCAGTTTAAAATCATTT
66 ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATGAA-AAAAATTCAATTTAAAATCATTT
* * * *
22497379 CTAAAGTTATAAAACCATTTAAAACCAGTAACAAGGCCTTC
130 ATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * **
22497420 GAAGGTATGAGTGACTATAAATAGACTTTT-TTGGTCAATGGATGGCTTTGGCTTCACGTTTCTT
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCACGTTTCCC
* * * *
22497484 GATGCGAACATTCAATTATGATCTATTTTAACTAGAAATTGAAAACAATTCAATTTAAAATCATT
65 AATGCAAACATTCAATTATGATCTGTTTTAACTAGAAA-TGAAAAAAATTCAATTTAAAATCATT
* * * *
22497549 TATAAAGTTATAAAACTACTTGAAA-AGAGTAACTAGGCTTTC
129 TATAAAGTTATAAAACCA-TTTAAAGCGAGTAACAAGGCTTTC
* ** * **
22497591 AAAGGCATGAGTGACTATAAATCAACTTTTCTTGTCAATGGATGGCTCTT-GCTTCAAGTTTCTT
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTCGCTTCACGTTTCCC
** * ** * * **
22497655 GTTGCAAACATCCAATTGCGAT-TCGTTTTAACCAAAAACAAAAATAAATTCAATTTAAAATCAT
65 AATGCAAACATTCAATTATGATCT-GTTTTAACTAGAAATGAAAA-AAATTCAATTTAAAATCA-
* * * *
22497719 TTTATAAAGTTATAAAGCCACTTAAA-CTGAGTGACAATGCATTT-
127 TTTATAAAGTTATAAAACCATTTAAAGC-GAGTAACAAGGC-TTTC
* * * * * *
22497763 GAAGGCACGAGTGACTATAAATAGAC-TTTCTTTGTCAATGGGTGACTTTTGCTACACGTTTCCC
1 GAAGGCATGAGTGACTATAAATGGACTTTTC-TTGTCAATGGATGGCTTTCGCTTCACGTTTCCC
* * ** * * *** *
22497827 AATACAAACATCCAATTATGATGAGTTTTAA-AAAAAATGAAAATAAAATTTGGTTTAAAATAAT
65 AATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATG-AAA-AAAATTCAATTTAAAATCAT
* * * * *
22497891 TTAT-AAGACTATAAAACCATTTAATGCAAATAACTAGGCTTTC
128 TTATAAAG-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * *
22497934 GAAGGCATCAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGTTTCACGTTTCTCA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * * * * * * *
22497999 ATGCGAGCAATGAATTATGATTTGTTTTAGCCAGAAATGAAAAAAATTTAATTTAAAATGATTTA
66 ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTA
* * *
22498064 TAAAGTTATAAAACCACTTTAAAACTAGTGACAAGG-TGTTC
131 TAAAGTTATAAAACCA-TTTAAAGCGAGTAACAAGGCT-TTC
* * * *
22498105 CAAGGCATGAGTGACTATAAATGGA-TATTTCTTGTAAATGGATGGCTTCCGCTTCATGTTTCCC
1 GAAGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCC
* * * ** * *
22498169 AAAGCGAACATTCAATTATGATCTATTTTAACTAGAAACAAAAAAAATTCAGTTCAAAATCATTT
65 AATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTT
** *
22498234 ATAAAGTTATAAAATAATTTAAAGCAAGTAACAAGGAC-TTC
130 ATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGG-CTTTC
* * * * * * *
22498275 AAAGGCATAAGTAACTATAAATAGACTTTTCTTGT-AGTGGATGGCTTTCGCTTTACGTTTCCTA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * * * * *
22498339 GTGTAAACATTCAATTATGATCTGTTTCAACTAGAAACGAAAAAAAATTTAGTTCAAAATCATTT
66 ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTT
* * *
22498404 ATAAATTTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
130 ATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * * *
22498445 AAACGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGG-TGTTCGTTTCATGTTTCCT
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTCGCTTCACGTTTCCC
* * * * * *
22498509 TATGCAAATATTCAATTAT-ACACTGTTTGAACCAGAAATGTAAAAAAATTAAATTTAAAATCAT
65 AATGCAAACATTCAATTATGA-TCTGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCAT
* * * * *
22498573 TTATAAAGTTAGAAAACAACTTAAAGCGAGTAACTA-GCTTTT
128 TTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * * *
22498615 GAAGGCATGAGTGACTATAAATGAACTTTTCTTTTCAATGGATGGCTTTCACTTAATGTTTCCTA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
** * * * * ** * * *
22498680 ATGTGAACATTGAATTATAATTTGTTTTAA-TAAAAAACAAAAAAAAATCAGTTCAAAATCATTT
66 ATGCAAACATTCAATTATGATCTGTTTTAACT-AGAAATGAAAAAAATTCAATTTAAAATCATTT
* * * *
22498744 ATAAAGTTATCAAACCATTTAAAGTGAGTAATAAGGCCTTC
130 ATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * ***
22498785 GAAGGCATGACTAACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTG
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * *
22498850 ATGCAAACATCCAATTATAATCCGTTTTAACCA-AAAT-AAAAAAACTTCAATTTAAAATCATTT
66 ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAA-TTCAATTTAAAATCA-TT
* * ** *
22498913 TCTAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTC
129 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * * *
22498955 GAAGGCATGAGTGACTAGAGAGTGACTAGAAATAGAC-TTTCTAGTCAATGCATGTCTTTTGCTA
1 GAAGGCATGAGTGAC-------T-A-T--AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * * * * *
22499019 CACGTTTTCCAATGCAAATATCCAATTATGATGTGTTTT-A-TAAAAAAAGAAAAAAATT-GATT
55 CACGTTTCCCAATGCAAACATTCAATTATGATCTGTTTTAACT-AGAAATGAAAAAAATTCAATT
* * * * *
22499081 TAAAATAATTTAT-AAGACTATAAAATCATTTAAAGCAAGTAACTAGGCTTTC
119 TAAAATCATTTATAAAG-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
** *
22499133 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCACGTTTCTCA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
** ** * * * *
22499198 ATGTGAATGTTGAATTATGATCCGTTTTAGCTAGAAGTGTAAAAAAATTCAATTTAAAATCATTT
66 ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTT
* *
22499263 AT-AAGACTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC
130 ATAAAG-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * *
22499304 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTAAATTGATGGTTTTCACTTCACGTTTCCCG
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * * * *
22499369 ATGCAAACA-TCAAATTATGTTCCGTTTCAACAAAAAATGAAAAAACATTTAATTTAAAATCATT
66 ATGCAAACATTC-AATTATGATCTGTTTTAACTAGAAATGAAAAAA-ATTCAATTTAAAATCA-T
* * *** * * *
22499433 TTTTAAAGTTATAAAACCACTTAAAATAAGTGACAAGACATTC
128 TTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * *
22499476 GAATGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTCGCTATGCA--TTTTC
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-T-CACGTTTCC
** * * * * ** * *
22499539 TGATGCAAACATCTGAA-TATGATGTGTTTTAACAAAAAATGAAAAAAAAACTGATTTAAAATAA
64 CAATGCAAACAT-TCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTC-AATTTAAAATCA
* * * ** *
22499603 TTTCT-AAGACTATAAAATCATTTAAAGATAGTAACTAGGCTTTC
127 TTTATAAAG-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * ** * * * * **
22499647 GAAGGCATGAGCGACTATAAGTGGACTTTAATTGTGAATGGATAGCTTTCACTTGACGTTTCTAA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * * ** **
22499712 ATGCGAACATTGAATTATGAT-TCGTTTTAGCTAGAAGTGTAAAAAAATTCAATTTAATTTTTTT
66 ATGCAAACATTCAATTATGATCT-GTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATT
* * * *
22499776 TATAAAGTTATAAAACAACTTAAAACGAGTAACTAGGCTTTC
129 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * *
22499818 GAAGGCGTGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTACCCA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* * * * *
22499883 ATGCAAACATCCAATTATGATATGTTTTAA-TGAAAAATGAAAAATATTTCAATTTAAAATGATT
66 ATGCAAACATTCAATTATGATCTGTTTTAACT-AGAAATGAAAAA-AATTCAATTTAAAATCATT
* * * * *
22499947 TATAAGAG-TAAAAAACTATTCAAAGTGAGTAACTAA-CCTTTC
129 TATAA-AGTTATAAAACCATTTAAAGCGAGTAAC-AAGGCTTTC
* * * * * *
22499989 GAAGGCATGAGTGAATATAAATGGACTTTGCTTGTTAATGGATAGCTTTCGTTTCACGTTTCCCG
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
* *
22500054 ATGCAAACATTTAATTATGATTTGTTTTAACT-GAAA
66 ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAA
22500090 GCAAGTAACT
Statistics
Matches: 2426, Mismatches: 497, Indels: 177
0.78 0.16 0.06
Matches are distributed among these distances:
167 7 0.00
168 59 0.02
169 127 0.05
170 552 0.23
171 1252 0.52
172 281 0.12
173 10 0.00
174 3 0.00
177 4 0.00
178 47 0.02
179 13 0.01
180 57 0.02
181 14 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA
ATGCAAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTA
TAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
Found at i:22497434 original size:588 final size:588
Alignment explanation
Indices: 22496318--22497495 Score: 1365
Period size: 588 Copynumber: 2.0 Consensus size: 588
22496308 AACAAGGCCT
* * *
22496318 TTGAAGGCATAAGTGACTATAAATATACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCC
1 TTGAAGGCATAAGTGACTATAAATATACATTTCTTATCAATGGATGGCTTTCACTTCACATTTCC
* * * * *
22496383 TGATGCGAACATTCAATTATGATCTGTTATAGCCAAAAATGAAAGAAAAGTCAATTTAAAATTAT
66 TAATGCGAACATCCAATGATGATATGTTATAACCAAAAATGAAAGAAAAGTCAATTTAAAATTAT
* * ** **
22496448 TTATAAAGTTATAAAATCACTTAAAGCGAGTAACTTGGGTTTCAAGGGCATAAGTGACATAAAAT
131 TTATAAAGTTATAAAACCACTTAAAACGAGTAACGAGGCATTCAAGGGCATAAGTGACATAAAAT
* * ** * *
22496513 GGACTTTTCTTCTCAATGGATGGCTTTCGTCTCATGTTTCTTGATGCAAAATTCAGTTATGATCT
196 GGACTTTTCTTCTCAATAGATGGCTTCCGTCTCATGTTTCCCGATGCAAAATTCAATTATGATAT
* *** * *
22496578 GTTTCAACCAAAAATGAGAAAATGTTCAATTTAAAATCATTTATTAAGTTATAAAACCACTTAAA
261 ATTTCAACCAAAAATGAGAAAAAAATCAATTCAAAATCATTTATAAAGTTATAAAACCACTTAAA
* * * *
22496643 ATGGGTGACAAGGCATTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCT
326 ACGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGGTGGCT
* * * *
22496708 TTTGCTACATGTTTCCCAATGCAAACATCAAATTATCATGTGTTTTAACAAAAATGAAAACAAAT
391 TTCGCTACATGTTTCCCAATGAAAACATCAAAGTATCATCTGTTTTAACAAAAATGAAAACAAAT
** *** * * *
22496773 TTTGATTTAAAATAGTTTATAAGACTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGC
456 TCAGATTTAAAATAGTTTATAAGACTATAAAACCATTTAAAACCAGTAACAAGGCCTTCGAAGGC
* * *
22496838 ATGAGTGACTATAAATAGACTTTTCTT-CTCAATAGATGGCTTTCACTTCATGTTTTTTGATGTG
521 ATGAGTGACTATAAATAGACTTTT-TTGCTCAATAGATGGCTTTCACTTCACGTTTCTTGATGCG
22496902 AACA
585 AACA
* **
22496906 TTGAAGGCATGAGTGACTATAAAT-TGACATTTCTTATCAATGGATGGCTTTCACTTCATGTTT-
1 TTGAAGGCATAAGTGACTATAAATAT-ACATTTCTTATCAATGGATGGCTTTCACTTCACATTTC
* * **
22496969 CTCAATGCGAGCATCCAATGATGATATGTTTTAATGAAAAATGTAAA-AAAA-TCAATTTAAAAT
65 CT-AATGCGAACATCCAATGATGATATGTTATAACCAAAAATG-AAAGAAAAGTCAATTTAAAAT
* * **
22497032 TATTTATATAGTTATAAAACCACTTCAAAATGAGTAACGAGGCATTCAAGGGCATGGGTGAC-TA
128 TATTTATAAAGTTATAAAACCACTT-AAAACGAGTAACGAGGCATTCAAGGGCATAAGTGACATA
* * * *
22497096 TAAATGGATTTTTCTTGTGAATAGATGGCTTCCAGT-TCATGTTTCCCGATGCCAACATTCAATT
192 -AAATGGACTTTTCTTCTCAATAGATGGCTTCC-GTCTCATGTTTCCCGATG-CAAAATTCAATT
* ** * * * * **
22497160 ATGATATATTTTAATTAGAAATTA-AAAAAAATCAGTTCAAAATCGTTTATAAAGTTATGCAACC
254 ATGATATATTTCAACCAAAAATGAGAAAAAAATCAATTCAAAATCATTTATAAAGTTATAAAACC
* * * * * *
22497224 ATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGATTGTAAATGGACATTTCTTGTCAATG
319 ACTTAAAACGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATG
* * * **
22497289 GTTGGCTTTCGCTTCATGTTTCCCAATGAAAACATTC-AAGTATGATCTGTTTTAACTTGAAATG
384 GGTGGCTTTCGCTACATGTTTCCCAATGAAAACA-TCAAAGTATCATCTGTTTTAAC-AAAAATG
* *
22497353 AAGAA-AAATTCAG-TTTAAAATCA-TTTCTAA-AGTTATAAAACCATTTAAAACCAGTAACAAG
447 AA-AACAAATTCAGATTTAAAAT-AGTTTATAAGA-CTATAAAACCATTTAAAACCAGTAACAAG
* * * **
22497414 GCCTTCGAAGGTATGAGTGACTATAAATAGACTTTTTTGGTCAATGGATGGCTTTGGCTTCACGT
509 GCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTTTGCTCAATAGATGGCTTTCACTTCACGT
22497479 TTCTTGATGCGAACA
574 TTCTTGATGCGAACA
22497494 TT
1 TT
22497496 CAATTATGAT
Statistics
Matches: 490, Mismatches: 87, Indels: 26
0.81 0.14 0.04
Matches are distributed among these distances:
587 43 0.09
588 397 0.81
589 48 0.10
590 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (588 bp):
TTGAAGGCATAAGTGACTATAAATATACATTTCTTATCAATGGATGGCTTTCACTTCACATTTCC
TAATGCGAACATCCAATGATGATATGTTATAACCAAAAATGAAAGAAAAGTCAATTTAAAATTAT
TTATAAAGTTATAAAACCACTTAAAACGAGTAACGAGGCATTCAAGGGCATAAGTGACATAAAAT
GGACTTTTCTTCTCAATAGATGGCTTCCGTCTCATGTTTCCCGATGCAAAATTCAATTATGATAT
ATTTCAACCAAAAATGAGAAAAAAATCAATTCAAAATCATTTATAAAGTTATAAAACCACTTAAA
ACGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGACATTTCTTGTCAATGGGTGGCT
TTCGCTACATGTTTCCCAATGAAAACATCAAAGTATCATCTGTTTTAACAAAAATGAAAACAAAT
TCAGATTTAAAATAGTTTATAAGACTATAAAACCATTTAAAACCAGTAACAAGGCCTTCGAAGGC
ATGAGTGACTATAAATAGACTTTTTTGCTCAATAGATGGCTTTCACTTCACGTTTCTTGATGCGA
ACA
Found at i:22497909 original size:514 final size:509
Alignment explanation
Indices: 22496904--22500089 Score: 2697
Period size: 514 Copynumber: 6.2 Consensus size: 509
22496894 TTGATGTGAA
* * * * *
22496904 CATT-GAAGGCATGAGTGACTATAAATTGACATTTCTTATCAATGGATGGCTTTCACTTCATGTT
1 CATTCGAAGGCATGAGTGACTATAAATAGAC-TTTTTTGTCAATGGATGGCTTTCGCTTCACGTT
* * * * *
22496968 TCTCAATGCGAGCATCCAATGATGATATGTTTTAA-T-GAAAAATGTAAAAAAA-TCAATTTAAA
65 TCTCAATGCAAACATTCAATTATGATCTGTTTTAACTAG-AAAATG-AAAAAAATTCAATTTAAA
* * * * * *
22497030 ATTATTTATATAGTTATAAAACCACTTCAAAATGAGTAACGAGGCATTC-AAGGGCATGGGTGAC
128 ATAATTTATAAAGTTATAAAACTACTT-AAAA-GAGTAACTAGGCTTTCGAA-GGCATGAGTGAC
* * * * * * * *
22497094 TATAAATGGATTTTTCTTGTGAATAGATGGCTTCCAGTTCATGTTTCCCGATGCCAACATTCAAT
190 TATAAATGGACTTTTCTTGTCAATGGATGGCTT-TACTTCAAGTTTCCCAATGCGAACATTCAAT
* * ** * * **
22497159 TATGATAT-ATTTTAATTAGAAATTAAAAAAAA-TCAGTTCAAAATCGTTTATAAAGTTATGCAA
254 TATGAT-TCGTTTTAACTAGAAAACAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAA
* * *
22497222 CCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGATTGTAAATGGACATTTCTTGTCAA
318 CCATTTAAAGCGAGTAACAAGG-CTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * * ***
22497287 TGGTTGGCTTTCGCTTCATGTTTCCCAATGAAAACATTCAAGTATGATCTGTTTTAACTTGAAAT
382 TGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCAGTTTTAACAAAAAAT
* * * * * **
22497352 GAAGAAAAATTCAGTTTAAAATCATTTCTAAAGTTATAAAACCATTTAAAACCAGTAACAAGG
447 GAAAAAAAATTTAATTTAAAATAATTTATAAAGTTATAAAACCATTTAAAATGAGTAACAAGG
* * *
22497415 CCTTCGAAGGTATGAGTGACTATAAATAGACTTTTTTGGTCAATGGATGGCTTTGGCTTCACGTT
1 CATTCGAAGGCATGAGTGACTATAAATAGACTTTTTT-GTCAATGGATGGCTTTCGCTTCACGTT
** * * * *
22497480 TCTTGATGCGAACATTCAATTATGATCTATTTTAACTAGAAATTGAAAACAATTCAATTTAAAAT
65 TCTCAATGCAAACATTCAATTATGATCTGTTTTAACTAGAAAATGAAAAAAATTCAATTTAAAAT
* *
22497545 CATTTATAAAGTTATAAAACTACTTGAAAAGAGTAACTAGGCTTTCAAAGGCATGAGTGACTATA
130 AATTTATAAAGTTATAAAACTACTT-AAAAGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATA
** * **** * * **
22497610 AATCAACTTTTCTTGTCAATGGATGGCTCTTGCTTCAAGTTTCTTGTTGCAAACATCCAATTGCG
194 AATGGACTTTTCTTGTCAATGGATGGCT-TTACTTCAAGTTTCCCAATGCGAACATTCAATTATG
* * *
22497675 ATTCGTTTTAACCA-AAAACAAAAATAAATTCAATTTAAAATCATTTTATAAAGTTATAAAGCCA
258 ATTCGTTTTAACTAGAAAACAAAAA-AAATTCAATTCAAAATCA-TTTATAAAGTTATAAAACCA
* * * * * *
22497739 CTTAAA-CTGAGTGACAATGCATTTGAAGGCACGAGTGACTATAAATAGAC-TTTCTTTGTCAAT
321 TTTAAAGC-GAGTAACAAGGC-TTCGAAGGCATGAGTGACTATAAATGGACTTTTC-TTGTCAAT
* * * * * *
22497802 GGGTGACTTTTGCTACACGTTTCCCAATACAAACATCCAATTATGATGAGTTTTAA-AAAAAATG
383 GGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCAGTTTTAACAAAAAATG
** * * *
22497866 AAAATAAAATTTGGTTTAAAATAATTTAT-AAGACTATAAAACCATTT--AATGCAAATAACTAG
448 AAAA-AAAATTTAATTTAAAATAATTTATAAAG-TTATAAAACCATTTAAAATG--AGTAACAAG
22497928 G
509 G
* * * * *
22497929 CTTTCGAAGGCATCAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGTTTCACGTT
1 CATTCGAAGGCATGAGTGACTATAAATAGACTTTT-TTGTCAATGGATGGCTTTCGCTTCACGTT
* * * * * * * *
22497994 TCTCAATGCGAGCAATGAATTATGATTTGTTTTAGCCAG-AAATGAAAAAAATTTAATTTAAAAT
65 TCTCAATGCAAACATTCAATTATGATCTGTTTTAACTAGAAAATGAAAAAAATTCAATTTAAAAT
* * * * * *
22498058 GATTTATAAAGTTATAAAACCACTTTAAAACTAGTGACAAGG-TGTTCCAAGGCATGAGTGACTA
130 AATTTATAAAGTTATAAAACTAC-TTAAAA-GAGTAACTAGGCT-TTCGAAGGCATGAGTGACTA
* ** * *
22498122 TAAATGGA-TATTTCTTGTAAATGGATGGCTTCCGCTTCATGTTTCCCAAAGCGAACATTCAATT
192 TAAATGGACT-TTTCTTGTCAATGGATGGCTT-TACTTCAAGTTTCCCAATGCGAACATTCAATT
* * *
22498186 ATGA-TCTATTTTAACTAG-AAACAAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAAT
255 ATGATTC-GTTTTAACTAGAAAACAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAAC
* * * * * * *
22498249 AATTTAAAGCAAGTAACAAGGACTTCAAAGGCATAAGTAACTATAAATAGACTTTTCTTGT-AGT
319 CATTTAAAGCGAGTAACAAGG-CTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * * * * * * * * *
22498313 GGATGGCTTTCGCTTTACGTTTCCTAGTGTAAACATTCAATTATGATCTGTTTCAACTAGAAACG
383 GGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCAGTTTTAACAAAAAATG
* * * * * *
22498378 AAAAAAAATTTAGTTCAAAATCATTTATAAATTTATAAAACCATTTAAAGTGAGTAATAAGG
448 AAAAAAAATTTAATTTAAAATAATTTATAAAGTTATAAAACCATTTAAAATGAGTAACAAGG
* * * * * * *
22498440 CTTTCAAACGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGG-TGTTCGTTTCATGT
1 CATTCGAAGGCATGAGTGACTATAAATAGACTTTT-TTGTCAATGGATGGCT-TTCGCTTCACGT
* * * * * *
22498504 TTC-CTTATGCAAATATTCAATTAT-ACACTGTTTGAACCAG-AAATGTAAAAAAATTAAATTTA
64 TTCTC-AATGCAAACATTCAATTATGA-TCTGTTTTAACTAGAAAATG-AAAAAAATTCAATTTA
* * * * *
22498566 AAATCATTTATAAAGTTAGAAAACAACTTAAAGCGAGTAACTA-GCTTTTGAAGGCATGAGTGAC
126 AAATAATTTATAAAGTTATAAAACTACTTAAA-AGAGTAACTAGGCTTTCGAAGGCATGAGTGAC
* * * * *
22498630 TATAAATGAACTTTTCTTTTCAATGGATGGCTTTCACTT-AATGTTTCCTAATGTGAACATTGAA
190 TATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTTCAA-GTTTCCCAATGCGAACATTCAA
* * * * * *
22498694 TTATAATTTGTTTTAA-TAAAAAACAAAAAAAAATCAGTTCAAAATCATTTATAAAGTTATCAAA
253 TTATGATTCGTTTTAACTAGAAAACAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAA
* * * *
22498758 CCATTTAAAGTGAGTAATAAGGCCTTCGAAGGCATGACTAACTATAAATGGACTTTTCTTGTCAA
318 CCATTTAAAGCGAGTAACAAGG-CTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* *** * * *
22498823 TGGATGGCTTTCGCTTCATGTTTCTTGATGCAAACATCCAATTATAATCCGTTTTAAC-CAAAAT
382 TGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCAGTTTTAACAAAAAAT
* * * * *
22498887 -AAAAAAACTTCAATTTAAAATCATTTTCTAAAGTTATAAAACCACTTAAAATGAGTAACAAGG
447 GAAAAAAAATTTAATTTAAAAT-AATTTATAAAGTTATAAAACCATTTAAAATGAGTAACAAGG
* * * * *
22498950 CATTCGAAGGCATGAGTGACTAGAGAGTGACTAGAAATAGACTTTCTAGTCAATGCATGTCTTTT
1 CATTCGAAGGCATGAGTGAC-------T-A-T--AAATAGACTTTTTTGTCAATGGATGGCTTTC
* * * * * *
22499015 GCTACACGTTT-TCCAATGCAAATATCCAATTATGATGTGTTTT-A-TAAAAAAAGAAAAAAATT
55 GCTTCACGTTTCT-CAATGCAAACATTCAATTATGATCTGTTTTAACTAGAAAATGAAAAAAATT
* * *
22499077 -GATTTAAAATAATTTAT-AAGACTATAAAA-T-CATTTAAAGCAAGTAACTAGGCTTTCGAAGG
119 CAATTTAAAATAATTTATAAAG-TTATAAAACTAC-TTAAAAG--AGTAACTAGGCTTTCGAAGG
* * *
22499138 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCACGTTTCTCAATGTG
180 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTACTTCAAGTTTCCCAATGCG
** * * * **** *
22499203 AATGTTGAATTATGATCCGTTTTAGCTAGAAGTGTAAAAAAATTCAATTTAAAATCATTTAT-AA
244 AACATTCAATTATGATTCGTTTTAACTAGAAAACAAAAAAAATTCAATTCAAAATCATTTATAAA
* *
22499267 GACTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
309 G-TTATAAAACCATTTAAAGCGAGTAACAAGGC-TTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * * *
22499332 TTCTTGTAAATTGATGGTTTTCACTTCACGTTTCCCGATGCAAACATCAAATTATGTTCCGTTTC
372 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCAGTTTT
* * * * *
22499397 AACAAAAAATGAAAAAACATTTAATTTAAAATCATTTTTTAAAGTTATAAAACCACTTAAAATAA
437 AACAAAAAATGAAAAAAAATTTAATTTAAAAT-AATTTATAAAGTTATAAAACCATTTAAAATGA
* *
22499462 GTGACAAGA
501 GTAACAAGG
* * *
22499471 CATTCGAATGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTCGCTATGCA-T
1 CATTCGAAGGCATGAGTGACTATAAATAGACTTTT-TTGTCAATGGATGGCTTTCGCT-T-CACG
* * * * ** *
22499535 TTTCT-GATGCAAACATCTGAA-TATGATGTGTTTTAAC-AAAAAATGAAAAAAAAACTGATTTA
63 TTTCTCAATGCAAACAT-TCAATTATGATCTGTTTTAACTAGAAAATGAAAAAAATTC-AATTTA
* * * * *
22499597 AAATAATTTCT-AAGACTATAAAA-TCATTTAAAGATAGTAACTAGGCTTTCGAAGGCATGAGCG
126 AAATAATTTATAAAG-TTATAAAACT-ACTTAAA-AGAGTAACTAGGCTTTCGAAGGCATGAGTG
* ** * * * * ** *
22499660 ACTATAAGTGGACTTTAATTGTGAATGGATAGCTTTCACTTGACGTTTCTAAATGCGAACATTGA
188 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTTCAAGTTTCCCAATGCGAACATTCA
* **** * ** **
22499725 ATTATGATTCGTTTTAGCTAGAAGTGTAAAAAAATTCAATTTAATTTTTTTTATAAAGTTATAAA
252 ATTATGATTCGTTTTAACTAGAAAACAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAA
* * * * * *
22499790 ACAACTTAAAACGAGTAACTAGGCTTTCGAAGGCGTGAGTGACTATAAATGAACTTTTCTTGTCA
317 ACCATTTAAAGCGAGTAACAAGGC-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * **
22499855 ATGGATGGCTTTCACTTCATGTTACCCAATGCAAACATCCAATTATGAT-ATGTTTTAATGAAAA
381 ATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCA-GTTTTAACAAAAA
* * * * * *
22499919 ATG-AAAAATATTTCAATTTAAAATGATTTATAAGAG-TAAAAAACTATTCAAAGTGAGTAACTA
445 ATGAAAAAAAATTT-AATTTAAAATAATTTATAA-AGTTATAAAACCATTTAAAATGAGTAAC-A
*
22499982 A-C
507 AGG
* * * * * * *
22499984 CTTTCGAAGGCATGAGTGAATATAAATGGACTTTGCTTGTTAATGGATAGCTTTCGTTTCACGTT
1 CATTCGAAGGCATGAGTGACTATAAATAGACTTT-TTTGTCAATGGATGGCTTTCGCTTCACGTT
* * * *
22500049 TCCCGATGCAAACATTTAATTATGATTTGTTTTAACT-GAAA
65 TCTCAATGCAAACATTCAATTATGATCTGTTTTAACTAGAAA
22500090 GCAAGTAACT
Statistics
Matches: 2185, Mismatches: 393, Indels: 192
0.79 0.14 0.07
Matches are distributed among these distances:
509 20 0.01
510 239 0.11
511 296 0.14
512 308 0.14
513 269 0.12
514 622 0.28
515 11 0.01
516 8 0.00
517 30 0.01
518 98 0.04
519 149 0.07
520 47 0.02
521 88 0.04
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (509 bp):
CATTCGAAGGCATGAGTGACTATAAATAGACTTTTTTGTCAATGGATGGCTTTCGCTTCACGTTT
CTCAATGCAAACATTCAATTATGATCTGTTTTAACTAGAAAATGAAAAAAATTCAATTTAAAATA
ATTTATAAAGTTATAAAACTACTTAAAAGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAA
TGGACTTTTCTTGTCAATGGATGGCTTTACTTCAAGTTTCCCAATGCGAACATTCAATTATGATT
CGTTTTAACTAGAAAACAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCATTTAA
AGCGAGTAACAAGGCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
TTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCAGTTTTAACAAAAAATGAAAAAAAA
TTTAATTTAAAATAATTTATAAAGTTATAAAACCATTTAAAATGAGTAACAAGG
Found at i:22500749 original size:171 final size:168
Alignment explanation
Indices: 22500531--22503507 Score: 2004
Period size: 171 Copynumber: 17.4 Consensus size: 168
22500521 TTTATAAGAC
* * ** * * * * ** *
22500531 TATAAAGCCAATTAAAGCAAGTAACTAGACTTTCGATGGCATGAGTGACAATAAATAAATTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * *
22500596 TTGTCAATAGG-TGGCTTTTGCTACATGTTTCTCGATGCAAACATTGAATTATTATCTGTTTTAG
65 TTGTCAAT-GGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAA
* * *
22500660 CTAGAAATGAAAGAAAATTCAGTTTAAAATCATATATAAAGT
129 CCAAAAATGAAA-AAAATTCAATTTAAAATCAT-TATAAAGT
** *
22500702 TATAAAAATAGTTAAAGTGAGTAACAAGGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAA-GGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * ** ** *
22500767 TAGTCAATGGATGACTTTCGCTTCACGTTTCCCAATGTGAACATTCAATTATGATCTACTTTAAG
65 TTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAAC
** *
22500832 CAAAAATGAAAAAAAAATTCAATTCCAAATGAGTTATAAAGT
130 CAAAAATG--AAAAAAATTCAATTTAAAATCA-TTATAAAGT
* * * * *
22500874 TACAAAACCACTTAAAAGTGACTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGATTTTT
1 TATAAAACCACTT-AAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTT
* * * *
22500939 CTTATGAATGGATGGCTTTTACTACACGTTTCCCGAAATG--AACATTCAACTATGATCTGTTTT
64 CTTGTCAATGGATGGCTTTTGCTACACGTTTCCCG--ATGCAAACATTCAATTATGATCTGTTTT
* * * * * * *
22501002 GACTAGAAAT-AAAAACAATTCAGTTCAAAATGATTTTAAAAGT
127 AACCAAAAATGAAAAA-AATTCAATTTAAAATCATTAT-AAAGT
* * * * *
22501045 TATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATAAGTGACTATAAATGCACTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * * *
22501110 ATATCAATGGATGGCTTTT-CCATCATGTTTCCCAATGCGAACATTGAATTATGATCTGTTTTAG
65 TTGTCAATGGATGGCTTTTGCTA-CACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAA
* *
22501174 CTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGT
129 CCAAAAATGAAA-AAAATTCAATTTAAAATCA-TTATAAAGT
* * *
22501216 TATAAAATCACTTAAAGTGAGTAACAAGGTCTTTAAAAGCATGAGTGACTATAAATGGACTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * ** * * * *
22501281 TTGTCAATGGATAGCTTTCGCTTCACATTTCTTGATGCAAACATCCAATTGTGAT-TCATTTAAA
65 TTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCT-GTTTTAA
*
22501345 CCAAAAATGAAAAATAATTCAATGTAAAATCATTTATAAAGT
129 CCAAAAATGAAAAA-AATTCAATTTAAAATCA-TTATAAAGT
* * ** * *
22501387 TATAAAACTACTTAAAGCGAGTAACAAGGCATTCAAAGGTATGAGTGACTATAAATGGGCTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * * * *
22501452 TTGTCAATAGATGCCTTTCGCTTCAAC-TGTCCCCG-TGCAAATA-GCAATTTACGATAAT-TTT
65 TTGTCAATGGATGGCTTTTGCTAC-ACGT-TTCCCGATGCAAACATTCAA-TTATGAT-CTGTTT
* * * * * * *
22501513 TAACAAAAAAAGTGAAAGAAGTACAGTTTAAATTAATTCAT-AAGAT
126 TAAC-CAAAAA-TGAAAAAAATTCAATTTAAAATCATT-ATAAAG-T
* * ** *
22501559 TATAAAACCA-TTAAAATGAGCAATTAGGCTTTTGTAA-GCATGAATGACTATAAATGGACTTTT
1 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTG-AAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * * * * *
22501622 CTTGTCAATGGGTGACATTTG-TAACATGTTTCCTGATGCGAATATCCAATTATGGTTTGTTTTA
64 CTTGTCAATGGATGGCTTTTGCT-ACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTA
* * *
22501686 ACCAACAATGAAAACAATTTCAATTTAAAA-CAATT-TATAAGAA
128 ACCAAAAATGAAAA-AAATTCAATTTAAAATC-ATTATA-AAG-T
* * * *
22501729 TAAAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAAT-GAATTTGT
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTT-T
* * * * ** *
22501793 CTTATCAATGGATGGCTTTCGCAACACATTTCCTAATTG-AAACA-TCAAATTATGATCTATTTT
64 CTTGTCAATGGATGGCTTTTGCTACACGTTTCCCGA-TGCAAACATTC-AATTATGATCTGTTTT
* * *
22501856 AACCAAAAATTAAAAAAAATCAATTTAAACTCATTTATAAAGT
127 AACCAAAAATGAAAAAAATTCAATTTAAAATCA-TTATAAAGT
* * * * * *
22501899 AACAAAACCATTTAAAGTGAGTGACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTC
* * * ** ** * *
22501964 TTGTTAATGGATGGCTTTCGCTACACGCTTCTTGATGCAAGTA-TCTAATTATGATTTCTTTT-A
65 TTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTC-AATTATGATCTGTTTTAA
* * * *
22502027 TCGAAAA-CAAAAAATTTCAATTTAAAATCATTGATAAAGT
129 CCAAAAATGAAAAAAATTCAATTTAAAATCATT-ATAAAGT
* * ** * *
22502067 TAGAATACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGACTGACTATAAATAGACTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTC
* * ** * * ** ** *
22502132 TTGTCTATGGGTGATTTTTGCTATATGTTTCCTAATGCAAACAACCAATTATGATGTGTTTTAAC
65 TTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAAC
22502197 CAAAAATGAAAAACAATTCAATTTAAAATCATT-TAGAATGT
130 CAAAAATGAAAAA-AATTCAATTTAAAATCATTATA-AA-GT
* * ** * *
22502238 TATAAAACTACTGAAAGTGAGTAACAAGGCTTCAAAGGCATTAGTGACTATAAATGGAATTTTCT
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * ** * * *
22502303 TATCAATGGATGACTTTTGCTTCACGTTTCTTGATGCAAACA-TCTAATTATGATCCGTTTCAAT
66 TGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTC-AATTATGATCTGTTTTAAC
* * * * * *
22502367 AAAAAATGGAAAAGAAGTACAGTTTAAATTGATTCAT-AAGAT
130 CAAAAAT-GAAAA-AAATTCAATTTAAAATCATT-ATAAAG-T
* * * * * * * *
22502409 TGTAAAACCATTTAAAATGAGTAACTAGGCTTTCGAAAGTATGAGTGACTATAAGTGGACTTTTG
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * * * * *
22502474 TTTTCAATGGGTGGCTTTTGCCACAAGTTTCTCAATGCGAACATCCAATTATGGTCTATTTT-AC
65 TTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAAC
* * *
22502538 CCAAAAT-AAAAATAATT-ATGATTTAAAATAATT-TATAAGAC
130 CAAAAATGAAAAA-AATTCA--ATTTAAAATCATTATA-AAG-T
* ** * * *
22502579 TA-AAAAGCCATTTAAAGCAAGTAACTAA-GCATTCGAAGGCATGAGTGGCTATAAATAGACTTT
1 TATAAAA-CCACTTAAAGTGAGTAAC-AAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * ** *
22502642 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGATGTGAATATTCAATTATGATCTGTTTTA
63 TCTTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTA
* *
22502707 AGCAAAAATGAAAAAAGAAACTCAATTTAAAATCATTTATAAAGT
128 ACCAAAAATG--AAAA-AAATTCAATTTAAAATCA-TTATAAAGT
* * * * * *
22502752 TATAAAACCACTTAAAGCT-AGTAACAAGGCTTTCAAGCCATGTGTGAATATAAATGTACTTGTC
1 TATAAAACCACTTAAAG-TGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * ** * * *
22502816 TTCTTAATGAATGGCTTTCACTTCACGTTTCCCAATGTAAACA-TCAAATTATGATCTG-TTTAA
65 TTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTC-AATTATGATCTGTTTTAA
* * * * *
22502879 TCCCAAAGTGAAAAAGAAGTACAATTTGAACTCATTCAT-AAGAT
129 -CCAAAAATGAAAAA-AA-TTCAATTTAAAATCATT-ATAAAG-T
* ** * * * * * * * *
22502923 TATAAAACCATTTAAAAAGAGTAACTAGACTTTCCCAA-GTATAAGTGACTGTAAGTGGACATTT
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT--GAAGGCATGAGTGACTATAAATGGACTTTT
* * * *** * * * *
22502987 CTTGTCAATGGATAGCATTTGCTTCACGTTTCATAATGCAAATATCCAATTATAATCCAG-TTTA
64 CTTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGAT-CTGTTTTA
* *
22503051 ACCAAAAATGAAAAAAAATCAATTCAAAATCATGTATAAAGT
128 ACCAAAAATGAAAAAAATTCAATTTAAAATCAT-TATAAAGT
* *** ** * * * *
22503093 TATAACACCAC-TAAAACAAGTAACAAGGCTTTCGAAACCATTAGTGACAATAAATAGACTTTTT
1 TATAAAACCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTC
* ** * * * *
22503157 TTGTCAATGGGTTACTTTCT-CTACATGTTTCCCAATGCAAACATCCAATTATGATATGTTTTAA
65 TTGTCAATGGATGGCTTT-TGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAA
* * * *
22503221 GCAACAATAAACAAAAACTTCAATTTAAAATCATGTAT-AAGAC
129 CCAAAAATGAA-AAAAA-TTCAATTTAAAATCAT-TATAAAG-T
* * * * * *
22503264 TAAAAAATCATTTAAAGTAAGTAACTAGGCTTTTGAAGGCATGAGTGAGTATAAATGGACTTTTT
1 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGAC-TTTT
* * * ** * * * * * * *
22503329 CTTGTTAATGGATAGCTTTTGCTTCATATTTCTCTAT-AAGAACATCCAATGATGATGTGTTTCA
64 CTTGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCA-AACATTCAATTATGATCTGTTTTA
*
22503393 AGCAAAAATGAACAAAAATTCAATTTAAAATCATTTATAAAGT
128 ACCAAAAATGAA-AAAAATTCAATTTAAAATCA-TTATAAAGT
* * * * * * ***
22503436 GATAAAATCACTTAAAGCGAGTAACAAGGCATTCGAAGGCCTGAATGACTATAAAAAAACTTTTC
1 TATAAAACCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGACTTTTC
22503501 TTGTCAA
65 TTGTCAA
22503508 AAGACAGCTT
Statistics
Matches: 2204, Mismatches: 489, Indels: 226
0.76 0.17 0.08
Matches are distributed among these distances:
167 2 0.00
168 137 0.06
169 127 0.06
170 518 0.24
171 765 0.35
172 409 0.19
173 223 0.10
174 16 0.01
175 7 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (168 bp):
TATAAAACCACTTAAAGTGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCT
TGTCAATGGATGGCTTTTGCTACACGTTTCCCGATGCAAACATTCAATTATGATCTGTTTTAACC
AAAAATGAAAAAAATTCAATTTAAAATCATTATAAAGT
Found at i:22501564 original size:514 final size:502
Alignment explanation
Indices: 22500511--22503507 Score: 2190
Period size: 514 Copynumber: 5.9 Consensus size: 502
22500501 AAAAACTTGA
* * * * * *
22500511 TTTAAAAGAATTTATAAGA-CTATAAAGCCAATTAAAGCAAGTAACTAGACTTTCGATGGCATGA
1 TTTAAAATAA-TTATAAGAGTTATAAAACC-ATTAAAGCAAGTAACAAGGCTTTCGAAGGCATGA
* * * * * * * *
22500575 GTGACAATAAATAAATTTTTCTTGTCAATAGGTGGCTTTTGC-TACATGTTTCTCGATGCAAACA
64 GTGACTATAAATAGACTTTTCTTGTCAATGGGTGACTTTTCCAT-CATGTTTCCCAATGCAAACA
** * * *
22500639 TTGAATTATTATCTGTTTTAGCTAGAAATGAAAGAAAATTCAGTTTAAAATCATATATAAAGTTA
128 TCCAATTATGATCTGTTTTAGC-A-AAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTA
*
22500704 TAAAAAT-AGTTAAAGTGAGTAACAAGGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCT
190 T-AAAATCACTTAAAGTGAGTAACAA-GGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * ** * *
22500768 AGTCAATGGATGACTTTCGCTTCACGTTTCCCAATGTGAACATTCAATTATGATCTACTTT-AAG
253 TGTCAATGGATG-CTTTCGCTTCACATTTCCTAATGCAAACATCCAATTATGATCTA-TTTAAAC
** * * * *
22500832 CAAAAATGAAAAAAAAATTCAATTCCAAATGAGTTATAAAGTTACAAAACCACTTAAAAGTGACT
316 CAAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTT-AAAGTGAGT
* * * * **
22500897 AACAAGGCATTCGAAGGCATGAGTGACTATAAATAGATTTTTCTTATGAATGGATGGCTTTTACT
378 AACAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT
* * * * * * * *
22500962 ACACGTTTCCCGAAATG-AACAT-TCAA-CTATGATCTGTTTTGACTAGAAATAAAAACAATT-C
443 ACAC-TGTCCC--AATGCAA-ATACCAATTTACGATATATTTTAAC-A-AAA-AAAAAAAATTAC
22501023 AG
501 AG
* * * * * * *
22501025 TTCAAAATGATTTTAAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATAAG
1 TTTAAAATAATTATAAGAGTTATAAAACCA-TTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAG
* * * * *
22501090 TGACTATAAAT-GCACTTTTCATATCAATGGATGGCTTTTCCATCATGTTTCCCAATGCGAACAT
65 TGACTATAAATAG-ACTTTTCTTGTCAATGGGTGACTTTTCCATCATGTTTCCCAATGCAAACAT
**
22501154 TGAATTATGATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTAT
129 CCAATTATGATCTGTTTTAGC-A-AAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTAT
* *
22501219 AAAATCACTTAAAGTGAGTAACAAGGTCTTTAAAAGCATGAGTGACTATAAATGGACTTTTCTTG
191 AAAATCACTTAAAGTGAGTAACAAGG-CTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * *
22501284 TCAATGGATAGCTTTCGCTTCACATTTCTTGATGCAAACATCCAATTGTGAT-TCATTTAAACCA
255 TCAATGGAT-GCTTTCGCTTCACATTTCCTAATGCAAACATCCAATTATGATCT-ATTTAAACCA
* * *
22501348 AAAATGAAAAATAATTCAATGTAAAATCATTTATAAAGTTATAAAACTACTTAAAGCGAGTAACA
318 AAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACA
* * * * * *
22501413 AGGCATTCAAAGGTATGAGTGACTATAAATGGGCTTTTCTTGTCAATAGATGCCTTTCGCTTCAA
382 AGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTAC-A
** * *
22501478 CTGTCCCCGTGCAAATAGCAATTTACGATA-ATTTTTAACAAAAAAAGTGAAAGAAGTACAG
446 CTGTCCCAATGCAAATACCAATTTACGATATA-TTTTAACAAAAAAA---AAA-AATTACAG
* *** * ** *
22501539 TTTAAATTAATTCATAAGA-TTATAAAACCATTAAAATGAGCAATTAGGCTTTTGTAA-GCATGA
1 TTTAAAATAATT-ATAAGAGTTATAAAACCATTAAAGCAAGTAACAAGGCTTTCG-AAGGCATGA
* * * ** * ** * *
22501602 ATGACTATAAATGGACTTTTCTTGTCAATGGGTGACATTTGTAACATGTTTCCTGATGCGAATAT
64 GTGACTATAAATAGACTTTTCTTGTCAATGGGTGACTTTTCCATCATGTTTCCCAATGCAAACAT
* * * * *
22501667 CCAATTATGGTTTGTTTTAACCAACAATGAAAACAATTTCAATTTAAAA-CAATTTAT-AAGAAT
129 CCAATTATGATCTGTTTT-AGCAA-AATGAAAA-AAATTCAATTTAAAATC-ATTTATAAAG-TT
* * * * *
22501730 AAAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAAT-GAATTTGTC
189 ATAAAATCACTTAAAGTGAGTAACAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTT-TC
* ** * *
22501794 TTATCAATGGATGGCTTTCGCAACACATTTCCTAATTG-AAACATCAAATTATGATCTATTTTAA
252 TTGTCAATGGAT-GCTTTCGCTTCACATTTCCTAA-TGCAAACATCCAATTATGATCTATTTAAA
* * * * * * *
22501858 CCAAAAATTAAAAAAAATCAATTTAAACTCATTTATAAAGTAACAAAACCATTTAAAGTGAGTGA
315 CCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAA
* * * *
22501923 CTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTTAATGGATGGCTTTCGCTAC
380 CAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
*** * * * * * * * * * *
22501988 AC-GCTTCTTGATGCAAGTATCTAA-TTATGATTTCTTTTATCGAAAACAAAAAATTTCAA
445 ACTG--TCCCAATGCAAATA-CCAATTTACGATATATTTTAACAAAAAAAAAAAATTACAG
* * *
22502047 TTTAAAATCATTGATAA-AGTTAGAATACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGA
1 TTTAAAATAATT-ATAAGAGTTATAAAACCA-TTAAAGCAAGTAACAAGGCTTTCGAAGGCATGA
* * * * *
22502111 CTGACTATAAATAGACTTTTCTTGTCTATGGGTGATTTTTGCTAT-ATGTTTCCTAATGCAAACA
64 GTGACTATAAATAGACTTTTCTTGTCAATGGGTGACTTTT-CCATCATGTTTCCCAATGCAAACA
* * * * *
22502175 ACCAATTATGATGTGTTTTAACCAAAAATGAAAAACAATTCAATTTAAAATCATTTAGAATGTTA
128 TCCAATTATGATCTGTTTT-AGC-AAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTA
* ** * *
22502240 TAAAA-CTACTGAAAGTGAGTAACAAGGCTTCAAAGGCATTAGTGACTATAAATGGAATTTTCTT
190 TAAAATC-ACTTAAAGTGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * ** * **
22502304 ATCAATGGATGACTTTTGCTTCACGTTTCTTGATGCAAACATCTAATTATGATCCGTTTCAATAA
254 GTCAATGGATG-CTTTCGCTTCACATTTCCTAATGCAAACATCCAATTATGATCTATTTAAACCA
* * * * * * * * *
22502369 AAAATGGAAAAGAAGTACAGTTTAAATTGATTCAT-AAGATTGTAAAACCATTTAAAATGAGTAA
318 AAAAT-GAAAA-AAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGTGAGTAA
* * * * * * * * * *
22502433 CTAGGCTTTCGAAAGTATGAGTGACTATAAGTGGACTTTTGTTTTCAATGGGTGGCTTTTGCCAC
380 CAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTAC
* * * * * * * * *
22502498 AAGTTTCTCAATGCGAACAT-CCAA-TTATGGTCTATTTTACCCAAAATAAAAATAATTA-TG
445 -ACTGTCCCAATGC-AA-ATACCAATTTACGATATATTTTA-ACAAAA-AAAAAAAATTACAG
* *
22502558 ATTTAAAATAATTTATAAGA-CTA-AAAAGCCATTTAAAGCAAGTAACTAA-GCATTCGAAGGCA
1 -TTTAAAATAA-TTATAAGAGTTATAAAA-CCA-TTAAAGCAAGTAAC-AAGGCTTTCGAAGGCA
* * * * * **
22502620 TGAGTGGCTATAAATAGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCCCGATGTGA
61 TGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGACTTTTC-CATCATGTTTCCCAATGCAA
* * *
22502684 ATATTCAATTATGATCTGTTTTAAGCAAAAATGAAAAAAGAAACTCAATTTAAAATCATTTATAA
125 ACATCCAATTATGATCTGTTTT-AGC-AAAATG--AAAA-AAATTCAATTTAAAATCATTTATAA
* * * * * *
22502749 AGTTATAAAACCACTTAAAGCT-AGTAACAAGGCTTTCAAGCCATGTGTGAATATAAATGTACTT
185 AGTTATAAAATCACTTAAAG-TGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * * * *
22502813 GTCTTCTTAATGAATGGCTTTCACTTCACGTTTCCCAATGTAAACATCAAATTATGATCTGTTTA
249 TTCTTGTCAATGGAT-GCTTTCGCTTCACATTTCCTAATGCAAACATCCAATTATGATCTATTTA
* * * * * * * * **
22502878 ATCCCAAAGTGAAAAAGAAGTACAATTTGAACTCATTCAT-AAGATTATAAAACCATTTAAAAAG
313 AACCAAAAATGAAAAA-AA-TTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGTG
* * * * * * * * * *
22502942 AGTAACTAGACTTTCCCAA-GTATAAGTGACTGTAAGTGGACATTTCTTGTCAATGGATAGCATT
375 AGTAACAAGGCATT-CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TT
* * ** ** *
22503006 T-GCTTCACGTTTCATAATGCAAATATCCAATTATA--ATCCAGTTTAACCAAAAATGAAAAAAA
438 TCGCTACAC-TGTCCCAATGCAAATA-CCAATT-TACGATATATTTTAA-CAAAAA--AAAAAAA
* *
22503068 AT-CAA
497 TTACAG
* * * * * ** *
22503073 TTCAAAATCATGTATAA-AGTTATAACACCACTAAAACAAGTAACAAGGCTTTCGAAACCATTAG
1 TTTAAAATAAT-TATAAGAGTTATAAAACCATTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAG
* * * *
22503137 TGACAATAAATAGACTTTTTTTGTCAATGGGTTACTTTCTCTA-CATGTTTCCCAATGCAAACAT
65 TGACTATAAATAGACTTTTCTTGTCAATGGGTGACTTT-TCCATCATGTTTCCCAATGCAAACAT
* * * *
22503201 CCAATTATGATATGTTTTAAGCAACAATAAACAAAAACTTCAATTTAAAATCATGTAT-AAGACT
129 CCAATTATGATCTGTTTT-AGCAA-AATGAA-AAAAA-TTCAATTTAAAATCATTTATAAAG-TT
* * * * *
22503265 AAAAAATCATTTAAAGTAAGTAACTAGGCTTTTGAAGGCATGAGTGAGTATAAATGGACTTTTTC
189 ATAAAATCACTTAAAGTGAGTAACAAGGC-TTTGAAGGCATGAGTGACTATAAATGGAC-TTTTC
* * * * * * * *
22503330 TTGTTAATGGATAGCTTTTGCTTCATATTTCTCT-AT-AAGAACATCCAATGATGATGTGTTTCA
252 TTGTCAATGGAT-GCTTTCGCTTCACATTTC-CTAATGCA-AACATCCAATTATGATCTATTTAA
* * * *
22503393 AGCAAAAATGAACAAAAATTCAATTTAAAATCATTTATAAAGTGATAAAATCACTTAAAGCGAGT
314 ACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGT
* * ***
22503458 AACAAGGCATTCGAAGGCCTGAATGACTATAAAAAAACTTTTCTTGTCAA
378 AACAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
22503508 AAGACAGCTT
Statistics
Matches: 1980, Mismatches: 402, Indels: 203
0.77 0.16 0.08
Matches are distributed among these distances:
507 4 0.00
508 109 0.06
509 165 0.08
510 129 0.07
511 31 0.02
512 403 0.20
513 485 0.24
514 619 0.31
515 33 0.02
516 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (502 bp):
TTTAAAATAATTATAAGAGTTATAAAACCATTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGT
GACTATAAATAGACTTTTCTTGTCAATGGGTGACTTTTCCATCATGTTTCCCAATGCAAACATCC
AATTATGATCTGTTTTAGCAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAAT
CACTTAAAGTGAGTAACAAGGCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
GATGCTTTCGCTTCACATTTCCTAATGCAAACATCCAATTATGATCTATTTAAACCAAAAATGAA
AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCATTCG
AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACTGTCCCAAT
GCAAATACCAATTTACGATATATTTTAACAAAAAAAAAAAATTACAG
Found at i:22504740 original size:40 final size:38
Alignment explanation
Indices: 22504688--22504826 Score: 151
Period size: 40 Copynumber: 3.7 Consensus size: 38
22504678 ACTCATCTCA
* * *
22504688 TGTGCATCCCCCCAAATCGTGCACATAGCTGGAGTCATCG
1 TGTGCATCCCCCCACATCGTGCACA-AG-TAGAGACATCG
* *
22504728 TGTGCATGCCCCCACATCGTGCACAAGTACAGACATCG
1 TGTGCATCCCCCCACATCGTGCACAAGTAGAGACATCG
* *
22504766 TGTGC-T-CCCCCACAT--TGCACACAGTTGATGCCATCG
1 TGTGCATCCCCCCACATCGTGCACA-AGTAGA-GACATCG
22504802 TGTGCATCCCCCCACATCGTGCACA
1 TGTGCATCCCCCCACATCGTGCACA
22504827 CAAGTAATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
34 6 0.07
35 4 0.05
36 20 0.24
37 2 0.02
38 22 0.26
39 2 0.02
40 29 0.34
ACGTcount: A:0.22, C:0.36, G:0.20, T:0.22
Consensus pattern (38 bp):
TGTGCATCCCCCCACATCGTGCACAAGTAGAGACATCG
Found at i:22507202 original size:341 final size:339
Alignment explanation
Indices: 22506157--22508928 Score: 2368
Period size: 341 Copynumber: 8.1 Consensus size: 339
22506147 ATGTTTCTCG
* * * ** * *
22506157 ATGCGAACATCCAATGATGATATGTTTTAAGAAAAAATGAGAAAAAATTC-AGTCAAAATCATTT
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAAT--GAAAAAATTCAACTTAAAATCATTT
* * * *
22506221 ATAAAGTTATAAAACCACTTAAAGTGAGTAATAAGGCTTTCGAAGCCATGAGTGA-TATAAATGG
64 ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGG
* * ** * * * * * *
22506285 ACCTTTT-ATGTTAATCTAGTAACTTTTGCTTCATGTTTCTCAACGTAAACATCCAATGATGATC
129 A-CTTTTCTTGTCAATGGA-TGACTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATC
* * * * * * *
22506349 TATTTTCACCAGAAATGAAAAAAAAATTCAACTCAAAATCATTTATAA-TGTTATAAAACCAGTT
192 TGTTTTAACCAAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTT
* * * * * * *
22506413 AAAGCAAGTAACAAGACATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTTTCCATGGATG
255 AAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * *
22506478 ACTTTC-ATAACATGTTTCCCA
320 GCTTTCGCT-TCACGTTT-CCA
* * * * * *
22506499 ATGCAAACATCAAATTATGATCAATTTTAAACAAAAATGAAAAATATTTCCA-TTCAAAGTCATT
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATGAAAAA-A-TTCAACTT-AAAATCATT
* * * * * * * *
22506563 TAT-AAGATAATAAAACTATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATTAGTAACTATAAAT
63 TATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAAT
* * * * ** * *
22506627 CGATTTTTTTTGTCAATGGAT-AGTTTCGCTTCATGTTTCTTAATGCGAACATCCAATGATGATC
127 GGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATC
* * * *
22506691 TGTTTTAACCAAAAATAAAAAAAATTTAATTTAAAATCATTTATAA-AGTTATGAAACCACTTAA
192 TGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAA
*** * * ** **
22506755 AGCGAGTAACAAGAAATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATTAAAAGATAAC
257 AGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* *
22506820 TTTCGCTTCATGTTTCTCG
322 TTTCGCTTCACGTTTC-CA
* * * *
22506839 ATGCAAACATCAAATAATGATCTATTTTTACCAGAAATGGAAAAAATTTCAACTTAAAATCATTT
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAAT-GAAAAAA-TTCAACTTAAAATCATTT
* * * * *
22506904 ATAATGTTATAAAACTACTTAAAGCGAGTAACAGGGCATTCTAAGGCATGAGTGACTTTAAATGG
64 ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGG
* ** ** ** *
22506969 ACCTTTCTTACCAATGGATGACTTTCGCAACATGTTTCCCAATGCAAACATGAAATTATGATCTA
129 ACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATCTG
* * * * *
22507034 TTTTAACCAAAAATGAAAAACAATTCAATTCAAAGTCATTTATTAGA-TAATAAAACTATTTAAA
194 TTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAAA
* * * * *
22507098 GTGAGTAACAAGGCTTTCGAAGGCATCAGTGAATGTAAATGGA-TTTTTTTGTCAATGGATGGCT
258 GCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
*
22507162 TTCGCTTCACGTTTCACT
323 TTCGCTTCACGTTTC-CA
** * * * *
22507180 ATGTGAACATCCAATGATGATCTGTTTTAACCAAGAATGAAAAAAATCAATTTAAAATCATTTAT
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATGAAAAAATTCAACTTAAAATCATTTAT
*
22507245 AAAGTTATAAAACCACTTAAAGTGAGT-ACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
66 AAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* *** * * *** * * * *
22507309 TTATCTTGTCAAAAAATGACTTTCGCTTTACGTTTCTTGATGCGAACATCCCATGATGATCTATT
131 TTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATCTGTT
** * * *
22507374 TTAAGTAAAAATGAAAACAAATTCAATTTAAAATTATTTATAA-AGTTATAAAACCACTTAAAGA
196 TTAACCAAAAATGAAAA-AAATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAAAGC
* * * * * * * **
22507438 GAGTAACAAGGCTTTTGAAGACATGAATGAATACAAATAGACTTTTCTTGTTAATGGATTACTTT
260 GAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
** **
22507503 CATTTCATTTTTCTCA
325 CGCTTCACGTTTC-CA
* * * * * *
22507519 CTACAAACATCCAATGATTATCTATTTTCACCAAAAATGAAAACAAATCAACTTAAAATTATTTA
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATGAAAA-AATTCAACTTAAAATCATTTA
* * * * * * * *
22507584 TAACGTAATAAAACCACTTAAAGCCAGTAATAGGGCATTCGAAGGTATAAGTGACTACAAATGGA
65 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
*** * * * * *
22507649 CTTTTCTAACCAATGGATGACTTTC-ATAACATGTTTCCCAATACAAACATCAAATTATGATTTG
130 CTTTTCTTGTCAATGGATGACTTTCGCT-TCATGTTTCCCAATGCAAACATCCAATTATGATCTG
* ** * *
22507713 TTTTAACCAAAAATGATAAAAATTTTGATTTAAAATAATTTATAAGA-CTATAAAACCATTTAAA
194 TTTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAAA
* * * * * *
22507777 GTGAGAAACTACGCCTCCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
258 GCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * **
22507842 TTCGCTTCATGGTTCTTG
323 TTCGCTTCACGTTTC-CA
* * *** ** *
22507860 ATGCAAACATCCAATGATGATCTGTTTTCACTTGAAATGAAAAAAAAATAAAACTTAATATCATT
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATG---AAAAAATTCAACTTAAAATCATT
* * * *
22507925 TATAAAGTTATAAAATCACTTAAAGTGAGTAACAAGGCATTTGAAGCCATGAGTGACTATAAATG
63 TATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATG
* * * * * *
22507990 GACTTTTCTTGTCAAAGGATGGCTTTCGTTTGATGTTTCCCAATGCAAACATCAAATTATAATCT
128 GACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATCT
* ** * *
22508055 GTTTTAACAAAAAATGAAAAAAAGTTACAATTTAAACCCATTCATAAGA-TTATAACACCATTTA
193 GTTTTAACCAAAAATGAAAAAAA-TT-CAATTTAAAATCATTTATAAGAGTTATAAAACCATTTA
* * ** * *
22508119 AAACGAGTAACTAGGCTTTTTAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAG
256 AAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * *
22508184 CATTCACTTAACGTTTCCCA
321 CTTTCGCTTCACGTTT-CCA
* * * * * * *** *
22508204 ATGCAAATATCCAATTACGATATGTTTTTAGTTAAAATGAAAAAAATTCAATTTAAAATCATTTA
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATG-AAAAAATTCAACTTAAAATCATTTA
* * * * * * * *
22508269 TAAAGTTATAAAGCCACTTAAAGCGGGTAACAAGGCTTTTGAAGCCATAAATGACTATAAATAGA
65 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* * * * * *
22508334 CTTTTCTTGTCAATGGGTGGCTTTCG-TTACATGTTTCCCAATGCGAACATTCAATTATGATTTT
130 CTTTTCTTGTCAATGGATGACTTTCGCTT-CATGTTTCCCAATGCAAACATCCAATTATGATCTG
* ** * * *
22508398 TTTTAACAAAAAATGAAAAAAATTTTGATTTAAAATAATTTATAAGA-CTATAAAACTATTTAAA
194 TTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAAA
* * ** * * * ** * * *
22508462 GCCAATAATTAGGCTTTCAAAGTCATGAGTGACTATTAACAGACTTTTGTTGTCCATGGGTGGCT
258 GCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * *
22508527 TTCGCTACACCTTTCTCC
323 TTCGCTTCACGTTTC-CA
* * * * * * * *
22508545 ATGCAAACATCTAATTATCATCTGTTTTATCTAGAAATGAAAAAACATTCAATTTAAAATCATTT
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATG-AAAAA-ATTCAACTTAAAATCATTT
* * * * * * *
22508610 AT-AGGATTATAAAACCAATTAATGCAACTAATAAGGCGTTCGAAGGCATGAGTGACTATAAATG
64 ATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATG
* * * ** * *
22508674 GACTTTTCTCGTTAAT-GAT-AGCATTCGCTTCACATTTCCCATTGCAAATATCCAATTATGATC
128 GACTTTTCTTGTCAATGGATGA-CTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATC
* * * * * *
22508737 TGTTTTAAGCATAAATGAAAAAAATTCAAATTAAAATCATTTATGA-AGTTATAGAACCACTTAA
192 TGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAA
* ** * * * *
22508801 AGCGAGTAATAAGGCTTTTAAAGCCATGAGTGGCTATAAATGGACTTTTCTTGTCAATGGGTGGG
257 AGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
*
22508866 TTTCGCTAT-ACATTTTCCA
322 TTTCGCT-TCAC-GTTTCCA
* * * *
22508885 ATGTAAACATCCAATTATGATCTATTTTAACAAAAAACGAAAAA
1 ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATGAAAAA
22508929 GAAATATGTG
Statistics
Matches: 1955, Mismatches: 436, Indels: 81
0.79 0.18 0.03
Matches are distributed among these distances:
337 1 0.00
338 164 0.08
339 114 0.06
340 402 0.21
341 527 0.27
342 402 0.21
343 196 0.10
344 148 0.08
345 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (339 bp):
ATGCAAACATCCAATGATGATCTATTTTAACCAAAAATGAAAAAATTCAACTTAAAATCATTTAT
AAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
TTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATCTGTT
TTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTTATAAAACCATTTAAAGCG
AGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC
GCTTCACGTTTCCA
Found at i:22507221 original size:170 final size:171
Alignment explanation
Indices: 22506147--22508928 Score: 2297
Period size: 171 Copynumber: 16.3 Consensus size: 171
22506137 AGGTCTCACA
* * * * * ** * *
22506147 ATGTTTCTCGATGCGAACATCCAATGATGATATGTTTTAAGAAAAAATGAGAAAAAATTC-AGTC
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTT
* * * *
22506211 AAAATCATTTA-TAAAGTTATAAAACCACTTAAAGTGAGTAATAAGGCTTTCGAAGCCATGAGTG
65 AAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * ** ** *
22506275 A-TATAAATGGACCTTTT-ATGTTAATCTAGTAACTTTTGCTTC
130 ACTATAAATGGA-CTTTTCTTGTCAATGGA-TGGCTTTCGCTTC
* * * * * * * *
22506317 ATGTTTCTCAACGTAAACATCCAATGATGATCTATTTTCACCAGAAATGAAAAAAAAATTCAACT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG--AAAAAAATTCAATT
* * * * * *
22506382 CAAAATCATTTA-TA-ATGTTATAAAACCAGTTAAAGCAAGTAACAAGACATTCAAAGGCATGAG
64 TAAAATCATTTATTAGA-GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAG
* * * * * *
22506445 TGACTATAAATAGACTTTTCTTTTCCATGGATGACTTTC-ATAAC
128 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-TC
* ** * * * *
22506489 ATGTTTCCCAATGCAAACATCAAATTATGATCAATTTTAAACAAAAATGAAAAATATTTCCATTC
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA-AATTCAATTT
* * * * * * * * *
22506554 AAAGTCATTTATAAGA-TAATAAAACTATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATTAGTA
65 AAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * *
22506618 ACTATAAATCGATTTTTTTTGTCAATGGATAG-TTTCGCTTC
130 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
** * * * *
22506659 ATGTTTCTTAATGCGAACATCCAATGATGATCTGTTTTAACCAAAAATAAAAAAAATTTAATTTA
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * ***
22506724 AAATCATTTA-TAAAGTTATGAAACCACTTAAAGCGAGTAACAAGAAATTCGAAGGCATGAGTGA
66 AAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * ** **
22506788 CTATAAATGGACTTTTCTTATTAAAAGATAACTTTCGCTTC
131 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * * * * * * *
22506829 ATGTTTCTCGATGCAAACATCAAATAATGATCTATTTTTACCAGAAATGGAAAAAATTTCAACTT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-GAAAAAAATTCAATTT
* * * *
22506894 AAAATCATTTA-TA-ATGTTATAAAACTACTTAAAGCGAGTAACAGGGCATTCTAAGGCATGAGT
65 AAAATCATTTATTAGA-GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGT
* * ** * **
22506957 GACTTTAAATGGACCTTTCTTACCAATGGATGACTTTCGCAAC
129 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
** * *
22507000 ATGTTTCCCAATGCAAACATGAAATTATGATCTATTTTAACCAAAAATGAAAAACAATTCAATTC
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA-AATTCAATTT
* * * * * *
22507065 AAAGTCATTTATTAGA-TAATAAAACTATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATCAGTG
65 AAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * *
22507129 AATGTAAATGGA-TTTTTTTGTCAATGGATGGCTTTCGCTTC
130 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * ** * *
22507170 ACGTTTCACTATGTGAACATCCAATGATGATCTGTTTTAACCAAGAATGAAAAAAA-TCAATTTA
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * *
22507234 AAATCATTTA-TAAAGTTATAAAACCACTTAAAGTGAGT-ACAAGGCATTCGAAGGCATGAGTGA
66 AAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* *** * *
22507297 CTATAAATGGACTTATCTTGTCAAAAAATGACTTTCGCTTT
131 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* *** * * * * **
22507338 ACGTTTCTTGATGCGAACATCCCATGATGATCTATTTTAAGTAAAAATGAAAACAAATTCAATTT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAA-AAATTCAATTT
* * * * * *
22507403 AAAATTATTTA-TAAAGTTATAAAACCACTTAAAGAGAGTAACAAGGCTTTTGAAGACATGAATG
65 AAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * ** **
22507467 AATACAAATAGACTTTTCTTGTTAATGGATTACTTTCATTTC
130 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * * * * * * *
22507509 ATTTTTCTCACTACAAACATCCAATGATTATCTATTTTCACCAAAAATGAAAACAAA-TCAACTT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAA-AAATTCAATTT
* * * * * * * *
22507573 AAAATTATTTA-TA-ACGTAATAAAACCACTTAAAGCCAGTAATAGGGCATTCGAAGGTATAAGT
65 AAAATCATTTATTAGA-GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGT
* *** * * *
22507636 GACTACAAATGGACTTTTCTAACCAATGGATGACTTTC-ATAAC
129 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-TC
* * * * **
22507679 ATGTTTCCCAATACAAACATCAAATTATGATTTGTTTTAACCAAAAATGATAAAAATTTTGATTT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTT
* * * * * * * * * *
22507744 AAAATAATTTATAAGA-CTATAAAACCATTTAAAGTGAGAAACTACGCCTCCGAAGGCATGAGTG
65 AAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTG
22507808 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
130 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* *** * * *** ** *
22507850 ATGGTTCTTGATGCAAACATCCAATGATGATCTGTTTTCACTTGAAATGAAAAAAAAATAAAACT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG--AAAAAAATTCAATT
* * * * *
22507915 TAATATCATTTA-TAAAGTTATAAAATCACTTAAAGTGAGTAACAAGGCATTT-GAAGCCATGAG
64 TAAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGC-TTTCGAAGGCATGAG
* * *
22507978 TGACTATAAATGGACTTTTCTTGTCAAAGGATGGCTTTCGTTTG
128 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * *
22508022 ATGTTTCCCAATGCAAACATCAAATTATAATCTGTTTTAACAAAAAATGAAAAAAAGTTACAATT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA-TT-CAATT
** * * * * * * **
22508087 TAAACCCATTCATAAGA-TTATAACACCATTTAAAACGAGTAACTAGGCTTTTTAAGGCATGAGT
64 TAAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGT
* * * * *
22508151 GACTATAAATGGACTTTTCTTATCAATGGATAGCATTCACTTA
129 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * * * ***
22508194 ACGTTTCCCAATGCAAATATCCAATTACGATATGTTTTTAGTTAAAATGAAAAAAATTCAATTTA
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * * * * * *
22508259 AAATCATTTA-TAAAGTTATAAAGCCACTTAAAGCGGGTAACAAGGCTTTTGAAGCCATAAATGA
66 AAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* *
22508323 CTATAAATAGACTTTTCTTGTCAATGGGTGGCTTTCG-TTAC
131 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-C
* * * * * **
22508364 ATGTTTCCCAATGCGAACATTCAATTATGATTTTTTTTAACAAAAAATGAAAAAAATTTTGATTT
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA-TTCAATTT
* * * * * * * ** * *
22508429 AAAATAATTTATAAGA-CTATAAAACTATTTAAAGCCAATAATTAGGCTTTCAAAGTCATGAGTG
65 AAAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTG
* ** * * * *
22508493 ACTATTAACAGACTTTTGTTGTCCATGGGTGGCTTTCGCTAC
130 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
** * * * * *
22508535 ACCTTTCTCC-ATGCAAACATCTAATTATCATCTGTTTTATCTAGAAATGAAAAAACATTCAATT
1 ATGTTTC-CCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA-ATTCAATT
* * * * * *
22508599 TAAAATCATTTA-TAG-GATTATAAAACCAATTAATGCAACTAATAAGGCGTTCGAAGGCATGAG
64 TAAAATCATTTATTAGAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAG
* * * *
22508662 TGACTATAAATGGACTTTTCTCGTTAAT-GATAGCATTCGCTTC
128 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
** * * * * *
22508705 ACATTTCCCATTGCAAATATCCAATTATGATCTGTTTTAAGCATAAATGAAAAAAATTCAAATTA
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * * ** * *
22508770 AAATCATTTATGA-AGTTATAGAACCACTTAAAGCGAGTAATAAGGCTTTTAAAGCCATGAGTGG
66 AAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* *
22508834 CTATAAATGGACTTTTCTTGTCAATGGGTGGGTTTCGCTATAC
131 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-T-C
* * * *
22508877 AT-TTT-CCAATGTAAACATCCAATTATGATCTATTTTAACAAAAAACGAAAAA
1 ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA
22508929 GAAATATGTG
Statistics
Matches: 2079, Mismatches: 480, Indels: 106
0.78 0.18 0.04
Matches are distributed among these distances:
167 35 0.02
168 104 0.05
169 171 0.08
170 633 0.30
171 731 0.35
172 384 0.18
173 21 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (171 bp):
ATGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
AAATCATTTATTAGAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGA
CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
Found at i:22508863 original size:511 final size:511
Alignment explanation
Indices: 22506157--22508933 Score: 2609
Period size: 511 Copynumber: 5.4 Consensus size: 511
22506147 ATGTTTCTCG
* * ** * *
22506157 ATGCGAACATCCAATGATGATATGTTTTAAGAAAAAATGAGAAAAAATTC-AGTCAAAATCATTT
1 ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTT
* *
22506221 ATAAAGTTATAAAACCACTTAAAGTGAGTAATAAGGCTTTCGAAGCCATGAGTGA-TATAAATGG
65 ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGG
* * ** * * * *
22506285 ACCTTTT-ATGTTAATCTAGTAACTTTTGCTTCATGTTTCTCAACGTAAACATCCAATGATGATC
130 A-CTTTTCTTGTCAATGGA-TGACTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATC
* * * * * *
22506349 TATTTTCACCAGAAATGAAAAAAAAATTCAACTCAAAATCATTTATAATG-TTATAAAACCAGTT
193 TATTTTAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAA-GATTATAAAACTACTT
* * * *
22506413 AAAGCAAGTAACAAGACATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTTTCCATGGATG
256 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCCATGGATG
* * *
22506478 ACTTTC-ATAACATGTTTCCCAATGCAAACATCAAATTATGATCAATTTTAAACAAAAATGAAAA
321 ACTTTCGCT-ACATGTTTCCCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAA
* * * * * * * *
22506542 ATATTTCCATTCAAAGTCATTTATAAGATAATAAAACTATTTAAAGTGAGTAACAAGGCTTTCAA
385 A-AATTCAATTTAAAATCATTTATAAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* * * * * * * **
22506607 AGGCATTAGTAACTATAAATCGATTTTTTTTGTCAATGGATAG-TTTCGCTTCATGTTTCTTA
449 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCGCTTCACGTTTCCCA
* * *
22506669 ATGCGAACATCCAATGATGATCTGTTTTAACCAAAAATAAAAAAAATTTAATTTAAAATCATTTA
1 ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTA
* *** *
22506734 TAAAGTTATGAAACCACTTAAAGCGAGTAACAAGAAATTCGAAGGCATGAGTGACTATAAATGGA
66 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGGA
* * ** * * * *
22506799 CTTTTCTTATTAAAAGATAACTTTCGCTTCATGTTTCTCGATGCAAACATCAAATAATGATCTAT
131 CTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATCTAT
* * * * *
22506864 TTTTACCAGAAATGGAAAAAATTTCAACTTAAAATCATTTATAATG-TTATAAAACTACTTAAAG
196 TTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAA-GATTATAAAACTACTTAAAG
* * * * * * *
22506928 CGAGTAACAGGGCATTCTAAGGCATGAGTGACTTTAAATGGACCTTTCTT-ACCAATGGATGACT
260 CGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCC-ATGGATGACT
* *
22506992 TTCGCAACATGTTTCCCAATGCAAACATGAAATTATGATCTATTTTAACCAAAAATGAAAAACAA
324 TTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAAA-AA
* * * * * *
22507057 TTCAATTCAAAGTCATTTATTAGATAATAAAACTATTTAAAGTGAGTAACAAGGCTTTCGAAGGC
388 TTCAATTTAAAATCATTTATAAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC
* * * * * * * *
22507122 ATCAGTGAATGTAAATGGA-TTTTTTTGTCAATGGATGGCTTTCGCTTCACGTTTCACT
453 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCGCTTCACGTTTCCCA
** *
22507180 ATGTGAACATCCAATGATGATCTGTTTTAACCAAGAATGAAAAAAA-TCAATTTAAAATCATTTA
1 ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTA
* * *
22507244 TAAAGTTATAAAACCACTTAAAGTGAGT-ACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
66 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGGA
* *** * * ** * *
22507308 CTTATCTTGTCAAAAAATGACTTTCGCTTTACGTTTCTTGATGCGAACATCCCATGATGATCTAT
131 CTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATCTAT
** * * * *
22507373 TTTAAGTAAAAATGAAAACAAATTCAATTTAAAATTATTTATAA-AGTTATAAAACCACTTAAAG
196 TTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACTACTTAAAG
* ** * * * * ** *
22507437 AGAGTAACAAGGCTTTTGAAGACATGAATGAATACAAATAGACTTTTCTTGTTAATGGATTACTT
260 CGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCCATGGATGACTT
** * * * * * * * * *
22507502 TCATTTCATTTTTCTCACTACAAACATCCAATGATTATCTATTTTCACCAAAAATGAAAACAAA-
325 TCGCTACATGTTTCCCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAA-AAAT
* * * * * * *
22507566 TCAACTTAAAATTATTTATAACG-TAATAAAACCACTTAAAGCCAGTAATAGGGCATTCGAAGGT
389 TCAATTTAAAATCATTTATAA-GATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC
* * *** * * * *
22507630 ATAAGTGACTACAAATGGACTTTTCTAACCAATGGAT-GACTTTC-ATAACATGTTTCCCA
453 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAG-CATTCGCT-TCACGTTTCCCA
* * * * * ** *
22507689 ATACAAACATCAAATTATGATTTGTTTTAACCAAAAATGATAAAAATTTTGATTTAAAATAATTT
1 ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTT
* * * * * * * * *
22507754 AT-AAGACTATAAAACCATTTAAAGTGAGAAACTACGCCTCCGAAGGCATGAGTGACTATAAATG
65 ATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATG
* * **
22507818 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGGTTCTTGATGCAAACATCCAATGATGATCT
129 GACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATCT
* * *** ** *
22507883 GTTTTCACTTGAAATGAAAAAAAAATAAAACTTAATATCATTTATAA-AGTTATAAAA-TCACTT
194 ATTTTAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACT-ACTT
* * * * * *
22507946 AAAGTGAGTAACAAGGCATTT-GAAGCCATGAGTGACTATAAATGGACTTTTCTTGTCAAAGGAT
256 AAAGCGAGTAACAAGGC-TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCCATGGAT
* * ** * * *
22508010 GGCTTTCGTTTGATGTTTCCCAATGCAAACATCAAATTATAATCTGTTTTAACAAAAAATGAAAA
320 GACTTTCGCTACATGTTTCCCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAA
** * * * * *
22508075 AAAGTTACAATTTAAACCCATTCATAAGATTATAACACCATTTAAAACGAGTAACT-AGGCTTTT
385 AAA-TT-CAATTTAAAATCATTTATAAGATAATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTC
* * * *
22508139 TAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCATTCACTTAACGTTTCCCA
447 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCGCTTCACGTTTCCCA
* * * * * ***
22508204 ATGCAAATATCCAATTACGATATGTTTTTAGTTAAAATGAAAAAAATTCAATTTAAAATCATTTA
1 ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTA
* * * * * *
22508269 TAAAGTTATAAAGCCACTTAAAGCGGGTAACAAGGCTTTTGAAGCCATAAATGACTATAAATAGA
66 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGGA
* * * * * * * *
22508334 CTTTTCTTGTCAATGGGTGGCTTTCG-TTACATGTTTCCCAATGCGAACATTCAATTATGATTTT
131 CTTTTCTTGTCAATGGATGACTTTCGCTT-CATGTTTCTCAATGCAAACATCCAATGATGATCTA
* ** * * * *
22508398 TTTTAACAAAAAATGAAAAAAATTTTGATTTAAAATAATTTATAAGACTATAAAACTATTTAAAG
195 TTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTACTTAAAG
* * ** * * * * * *
22508463 CCAATAATTAGGCTTTCAAAGTCATGAGTGACTATTAACAGACTTTTGTTGTCCATGGGTGGCTT
260 CGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCCATGGATGACTT
** * * * * * *
22508528 TCGCTACACCTTTCTCC-ATGCAAACATCTAATTATCATCTGTTTTATCTAGAAATGAAAAAACA
325 TCGCTACATGTTTC-CCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAAAA-A
* * * * * * *
22508592 TTCAATTTAAAATCATTTATAGGATTATAAAACCAATTAATGCAACTAATAAGGCGTTCGAAGGC
388 TTCAATTTAAAATCATTTATAAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC
* * *
22508657 ATGAGTGACTATAAATGGACTTTTCTCGTTAAT-GATAGCATTCGCTTCACATTTCCCA
453 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCGCTTCACGTTTCCCA
* * * * * *
22508715 TTGCAAATATCCAATTATGATCTGTTTTAAGCATAAATGAAAAAAATTCAAATTAAAATCATTTA
1 ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTA
* * * ** *
22508780 TGAAGTTATAGAACCACTTAAAGCGAGTAATAAGGCTTTTAAAGCCATGAGTGGCTATAAATGGA
66 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGGA
* ** * *
22508845 CTTTTCTTGTCAATGGGTGGGTTTCGCTATACAT-TTTC-CAATGTAAACATCCAATTATGATCT
131 CTTTTCTTGTCAATGGATGACTTTCGCT-T-CATGTTTCTCAATGCAAACATCCAATGATGATCT
*
22508908 ATTTTAACAAAAAACGAAAAAGAAAT
194 ATTTTAACAAAAAATGAAAAA-AAAT
22508934 ATGTGAGACC
Statistics
Matches: 1876, Mismatches: 350, Indels: 78
0.81 0.15 0.03
Matches are distributed among these distances:
508 66 0.04
509 296 0.16
510 72 0.04
511 533 0.28
512 344 0.18
513 299 0.16
514 139 0.07
515 124 0.07
516 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (511 bp):
ATGCAAACATCCAATGATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTA
TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGGA
CTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCTCAATGCAAACATCCAATGATGATCTAT
TTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTACTTAAAGC
GAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCCATGGATGACTTT
CGCTACATGTTTCCCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAAAAATTC
AATTTAAAATCATTTATAAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
AGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCATTCGCTTCACGTTTCCCA
Found at i:22510270 original size:23 final size:23
Alignment explanation
Indices: 22510240--22510299 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
22510230 TGAGCTGGTG
* * *
22510240 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGATGTGC
22510263 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
*
22510286 ATGATAATGATGGG
1 ATGATGATGATGGG
22510300 TATATGTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.27, C:0.02, G:0.38, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22526166 original size:21 final size:21
Alignment explanation
Indices: 22526140--22526194 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
22526130 TTGAGCTACT
22526140 ATAGTCAACTATGCATTCTTG
1 ATAGTCAACTATGCATTCTTG
* *
22526161 ATAGTCAACTCTGCGTTCTTG
1 ATAGTCAACTATGCATTCTTG
*
22526182 ATAGTCGACTATG
1 ATAGTCAACTATG
22526195 TCTATGTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (21 bp):
ATAGTCAACTATGCATTCTTG
Found at i:22532446 original size:82 final size:82
Alignment explanation
Indices: 22532330--22532499 Score: 268
Period size: 82 Copynumber: 2.1 Consensus size: 82
22532320 CATTGCCGTG
* *
22532330 CAAGCCAAAGAAAAGGGGGAGAAAGAATAGAAACAACCCTTGAGGAAGAAAATTCAAGAGAAATT
1 CAAGCCAAAGAAAAGGGGGAGAAAGAATAAAAACAACCCTTGAGAAAGAAAATTCAAGAGAAATT
*
22532395 CATCAGTTACCGAAAAA
66 CATCAGTTACCAAAAAA
* *
22532412 CAAGCCAAAGAAAAGGGGGGGAAAGAATAAAAACAACCTTTGAGAAAGAAAATTCAAGAGAAATT
1 CAAGCCAAAGAAAAGGGGGAGAAAGAATAAAAACAACCCTTGAGAAAGAAAATTCAAGAGAAATT
**
22532477 CATTGGTTACCAAAAAA
66 CATCAGTTACCAAAAAA
22532494 CGAAGC
1 C-AAGC
22532500 GATCTAAGGT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
82 76 0.95
83 4 0.05
ACGTcount: A:0.51, C:0.14, G:0.22, T:0.13
Consensus pattern (82 bp):
CAAGCCAAAGAAAAGGGGGAGAAAGAATAAAAACAACCCTTGAGAAAGAAAATTCAAGAGAAATT
CATCAGTTACCAAAAAA
Found at i:22536903 original size:71 final size:71
Alignment explanation
Indices: 22536803--22536994 Score: 285
Period size: 71 Copynumber: 2.7 Consensus size: 71
22536793 TCCTTAGCAC
* * * *
22536803 AATGATATAGAATGGACTCAGCTGATAAAGGTAAAGGTAATCTTATTTCATAGCTCTTTCCTCCA
1 AATGATATAGAATGGACTCAGCTGATAAAGGTAAAGGTAATCCTACTCCACAGCTCTTTCCTCCA
22536868 CAACTA
66 CAACTA
* * * * * *
22536874 AATGTTATAGAGTGGACTCAACTAATAAAGGTAAAGGTAATCCTACTCCACCGCTCTTTCTTCCA
1 AATGATATAGAATGGACTCAGCTGATAAAGGTAAAGGTAATCCTACTCCACAGCTCTTTCCTCCA
*
22536939 CAACTC
66 CAACTA
22536945 AATGATATAGAATGGACTCAGCTGATAAAGGTAAAGGTAATCCTACTCCA
1 AATGATATAGAATGGACTCAGCTGATAAAGGTAAAGGTAATCCTACTCCA
22536995 TACCCTACAA
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 106 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (71 bp):
AATGATATAGAATGGACTCAGCTGATAAAGGTAAAGGTAATCCTACTCCACAGCTCTTTCCTCCA
CAACTA
Found at i:22538480 original size:21 final size:22
Alignment explanation
Indices: 22538455--22538495 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22538445 CCTAGGTGGA
*
22538455 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
22538476 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
22538496 AAAAAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:22538496 original size:20 final size:21
Alignment explanation
Indices: 22538455--22538499 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
22538445 CCTAGGTGGA
*
22538455 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
22538476 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
22538496 AAAA
1 AAAA
22538500 AAAAGGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:22538500 original size:21 final size:20
Alignment explanation
Indices: 22538453--22538500 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
22538443 ACCCTAGGTG
*
22538453 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
22538473 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
22538495 GAAAAA
1 GAAAAA
22538501 AAAGGTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:22544692 original size:59 final size:59
Alignment explanation
Indices: 22544419--22544892 Score: 360
Period size: 59 Copynumber: 7.9 Consensus size: 59
22544409 TAAAAGTTCT
* * ** * * * * * *
22544419 TAGACTTAATCTAGGTTCAATTTATCTGAAAACAGGTTTGATTTAAAACGTTTGGAACTCT
1 TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATA--TTTTGAACTCC
* * * *
22544480 TAGA-TTCAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTAATATTTTGAACTCT
1 TAGACTT-AATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATATTTTGAACTCC
* * * * * * * ** * * * * *
22544539 TAAAC-TCATCTAAGCTCAACCTGTC-TAACGACAGGTTCAATTTAAAAAGCTTGGAGCTCC
1 TAGACTTAATCTAGGCTCGACCTATCTTAA-AACAGATTTGATTT-GATA-TTTTGAACTCC
* * * * **
22544599 TGGACTTAATTTAGGCTTGACTTATCTTAAAACAGATTCAATTTGATATTTTGAACTCC
1 TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATATTTTGAACTCC
* * * * * * *
22544658 TAGACTTAATCTAGGCTTGACTTATCTTACAACAGGTTTGATTTAAAAACTTTAGAACTCC
1 TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTT-GATA-TTTTGAACTCC
* * * *
22544719 TAAACTTAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTAAACTCC
1 TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATATTTTGAACTCC
* * * *
22544778 TAGACTTAATTTAGGCTCAACCTATCTCAAAACAGATTCGATTTGATATTTTGAAACTCC
1 TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATATTTTG-AACTCC
* * * * *
22544838 TTGACTTAATCTAGGCTCAACCTATCTTACAACAGGTTTGATTTAATATTTTGAA
1 TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATATTTTGAA
22544893 ATTCTCTCAT
Statistics
Matches: 329, Mismatches: 74, Indels: 22
0.77 0.17 0.05
Matches are distributed among these distances:
57 2 0.01
58 24 0.07
59 121 0.37
60 70 0.21
61 109 0.33
62 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (59 bp):
TAGACTTAATCTAGGCTCGACCTATCTTAAAACAGATTTGATTTGATATTTTGAACTCC
Found at i:22544726 original size:120 final size:120
Alignment explanation
Indices: 22544419--22544892 Score: 451
Period size: 119 Copynumber: 4.0 Consensus size: 120
22544409 TAAAAGTTCT
* *
22544419 TAGACTTAATCTAGG-TTCAATTTATCTGAA-AACAGGTTTGATTT-AAAACGTTTGGAACTCTT
1 TAGACTTAATCTAGGCTT-AACTTATCT-AACAACAGGTTTGATTTAAAAAC-TTTGGAACTCCT
* *
22544481 AGA-TTCAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTAATATTTTGAACTCT
63 AGACTT-AATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTGAACTCC
* * * * * * * ** * *
22544539 TAAAC-TCATCTAAGCTCAACCTGTCTAACGACAGGTTCAATTTAAAAAGC-TTGGAGCTCCTGG
1 TAGACTTAATCTAGGCTTAACTTATCTAACAACAGGTTTGATTTAAAAA-CTTTGGAACTCCTAG
* * * * * **
22544602 ACTTAATTTAGGCTTGACTTATCTTAAAACAGATTCAATTTGATATTTTGAACTCC
65 ACTTAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTGAACTCC
* * * *
22544658 TAGACTTAATCTAGGCTTGACTTATCTTACAACAGGTTTGATTTAAAAACTTTAGAACTCCTAAA
1 TAGACTTAATCTAGGCTTAACTTATCTAACAACAGGTTTGATTTAAAAACTTTGGAACTCCTAGA
*
22544723 CTTAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTAAACTCC
66 CTTAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTGAACTCC
* * * * * * * * * *
22544778 TAGACTTAATTTAGGCTCAACCTATCTCAA-AACAGATTCGATTT-GATATTTTGAAACTCCTTG
1 TAGACTTAATCTAGGCTTAACTTATCT-AACAACAGGTTTGATTTAAAAACTTTGGAACTCCTAG
* * * * * *
22544841 ACTTAATCTAGGCTCAACCTATCTTACAACAGGTTTGATTTAATATTTTGAA
65 ACTTAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTGAA
22544893 ATTCTCTCAT
Statistics
Matches: 280, Mismatches: 66, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
118 2 0.01
119 140 0.50
120 136 0.49
121 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (120 bp):
TAGACTTAATCTAGGCTTAACTTATCTAACAACAGGTTTGATTTAAAAACTTTGGAACTCCTAGA
CTTAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTGAACTCC
Found at i:22544846 original size:239 final size:239
Alignment explanation
Indices: 22544419--22544892 Score: 562
Period size: 239 Copynumber: 2.0 Consensus size: 239
22544409 TAAAAGTTCT
* * * *
22544419 TAGACTTAATCTAGGTTCAATTTATCTGAAAACAGGTTTGATTTAAAACGTTTGGAACTCTTAGA
1 TAGACTTAATCTAGGTTCAACTTATCTGAAAACAGGTTTGATTTAAAACGTTTAGAACTCCTAAA
* * *
22544484 TTCAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTAATATTTTGAACTCTTAAACTCATC
66 TTCAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTAATATTTTAAACTCCTAAACTAATC
* * * * * *
22544549 TAAGCTCAACCTGTCTAACGACAGGTTCAATTTAAAAAGCTTGGAGCTCCTGGACTTAATTTAGG
131 TAAGCTCAACCTATCTAACAACAGATTCAATTTAAAAAGCTTGAAACTCCTGGACTTAATCTAGG
** * *
22544614 CTTGACTTATCTTAAAACAGATTCAATTTGATATTTTGAACTCC
196 CTCAACCTATCTTAAAACAGATTCAATTTAATATTTTGAACTCC
* * *
22544658 TAGACTTAATCTAGGCTT-GACTTATCTTACAACAGGTTTGATTTAAAAAC-TTTAGAACTCCTA
1 TAGACTTAATCTAGG-TTCAACTTATCTGAAAACAGGTTTGATTT-AAAACGTTTAGAACTCCTA
* *
22544721 AACTT-AATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTGATATTTTAAACTCCTAGACTT
64 AA-TTCAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTAATATTTTAAACTCCTAAAC-T
* * * * * ** *
22544785 AATTTAGGCTCAACCTATCTCAA-AACAGATTCGATTT-GATATTTTGAAACTCCTTGACTTAAT
127 AATCTAAGCTCAACCTATCT-AACAACAGATTCAATTTAAAAAGCTTGAAACTCCTGGACTTAAT
* * **
22544848 CTAGGCTCAACCTATCTTACAACAGGTTTGATTTAATATTTTGAA
191 CTAGGCTCAACCTATCTTAAAACAGATTCAATTTAATATTTTGAA
22544893 ATTCTCTCAT
Statistics
Matches: 196, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
239 157 0.80
240 37 0.19
241 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (239 bp):
TAGACTTAATCTAGGTTCAACTTATCTGAAAACAGGTTTGATTTAAAACGTTTAGAACTCCTAAA
TTCAATCTAGGCTCGACCTATCTCAAAATAGATTTGATTTAATATTTTAAACTCCTAAACTAATC
TAAGCTCAACCTATCTAACAACAGATTCAATTTAAAAAGCTTGAAACTCCTGGACTTAATCTAGG
CTCAACCTATCTTAAAACAGATTCAATTTAATATTTTGAACTCC
Found at i:22545622 original size:21 final size:21
Alignment explanation
Indices: 22545596--22545661 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
22545586 ATGTTTTATA
22545596 AGAATGTACCCGAAGGTTTTG
1 AGAATGTACCCGAAGGTTTTG
** *
22545617 AGAATGTATCTAGAA-GTTTTC
1 AGAATGTA-CCCGAAGGTTTTG
*
22545638 AG-ATGTACCCAAAGGTTTTAG
1 AGAATGTACCCGAAGGTTTT-G
22545659 AGA
1 AGA
22545662 TATTCCCAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
19 3 0.09
20 10 0.29
21 17 0.50
22 4 0.12
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (21 bp):
AGAATGTACCCGAAGGTTTTG
Found at i:22545636 original size:44 final size:42
Alignment explanation
Indices: 22545566--22545661 Score: 97
Period size: 41 Copynumber: 2.2 Consensus size: 42
22545556 TTAACTGGAA
* * *
22545566 GTTTTGGAGAATATACTCAGATGTTTTATAAGAATGTACCCGAAG
1 GTTTTAGAGAATATACTCAGAAG-TTT-TAAG-ATGTACCCAAAG
* *
22545611 GTTTT-GAGAATGTA-TCTAGAAGTTTTCAGATGTACCCAAAG
1 GTTTTAGAGAATATACTC-AGAAGTTTTAAGATGTACCCAAAG
22545652 GTTTTAGAGA
1 GTTTTAGAGA
22545662 TATTCCCAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
41 16 0.36
42 7 0.16
43 5 0.11
44 12 0.27
45 5 0.11
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.34
Consensus pattern (42 bp):
GTTTTAGAGAATATACTCAGAAGTTTTAAGATGTACCCAAAG
Found at i:22545768 original size:22 final size:23
Alignment explanation
Indices: 22545743--22545802 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
22545733 TGAAACTAAT
22545743 TACCCAAAGGTTTTGGAA-AATA
1 TACCCAAAGGTTTTGGAAGAATA
* ** *
22545765 TACCTAAAGGTTTTATAAGAATG
1 TACCCAAAGGTTTTGGAAGAATA
22545788 TACCCAAAGGTTTTG
1 TACCCAAAGGTTTTG
22545803 AGAATGTACT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 15 0.48
23 16 0.52
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (23 bp):
TACCCAAAGGTTTTGGAAGAATA
Found at i:22545800 original size:186 final size:187
Alignment explanation
Indices: 22545477--22545896 Score: 490
Period size: 187 Copynumber: 2.2 Consensus size: 187
22545467 CTGAAGATTG
** ** * * * * *
22545477 TACCCAGAGGTTTTATAAGAAATGGTTGCTCCTCATCCCTAAAT-AAGACTTCGTAACTTTAAAG
1 TACCCAGAGACTTTATAAGAAAAAGATGCTCCTCATCTCTAAATGAAG--GTAGTAACTTTAAAC
* *** * * *
22545541 AATTCTTGAAACTAATTAACTGGAAGTTTTGGAGAATATACTCAGATGTTTTATAAGAATGTACC
64 AAATCTTGAAACTAATTAACCCAAAGTTTTGGAAAATATACTCAAAGGTTTTATAAGAATGTACC
* *
22545606 CGAAGGTTTTGAGAATGTA-TCTAGAAGTTTT-CAGATGTACCCAAAGGTTTTAGAGATA
129 CAAAGGTTTTGAGAATGTACT-TAGAAGTTTTGCAGATGTACCCAAAGGTCTTAGAGATA
* * * *
22545664 TTCCCAGAGGCTTTATAAGAAAAAGATGTTCCTTATCTCTAAATGAAGGTAGTAACTTTAAACAA
1 TACCCAGAGACTTTATAAGAAAAAGATGCTCCTCATCTCTAAATGAAGGTAGTAACTTTAAACAA
22545729 ATCTTGAAACTAATT-ACCCAAAGGTTTTGGAAAATATAC-CTAAAGGTTTTATAAGAATGTACC
66 ATCTTGAAACTAATTAACCCAAA-GTTTTGGAAAATATACTC-AAAGGTTTTATAAGAATGTACC
* * * *
22545792 CAAAGGTTTTGAGAATGTACTTGGAGGTTTTGGAGATGTACCTAAAGGTCTTAGAGATA
129 CAAAGGTTTTGAGAATGTACTTAGAAGTTTTGCAGATGTACCCAAAGGTCTTAGAGATA
* * * *
22545851 TACCTAGAGATTTTATAAGAAAAGGTTGCTCCTCATCTCTAAATGA
1 TACCCAGAGACTTTATAAGAAAAAGATGCTCCTCATCTCTAAATGA
22545897 GGCTAAAATA
Statistics
Matches: 196, Mismatches: 32, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
185 5 0.03
186 89 0.45
187 99 0.51
188 3 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (187 bp):
TACCCAGAGACTTTATAAGAAAAAGATGCTCCTCATCTCTAAATGAAGGTAGTAACTTTAAACAA
ATCTTGAAACTAATTAACCCAAAGTTTTGGAAAATATACTCAAAGGTTTTATAAGAATGTACCCA
AAGGTTTTGAGAATGTACTTAGAAGTTTTGCAGATGTACCCAAAGGTCTTAGAGATA
Found at i:22545840 original size:21 final size:21
Alignment explanation
Indices: 22545743--22545856 Score: 77
Period size: 21 Copynumber: 5.3 Consensus size: 21
22545733 TGAAACTAAT
* * *
22545743 TACCCAAAGGTTTTGGAAAATA
1 TACCTAAAGGTTTTGG-AGATG
**
22545765 TACCTAAAGGTTTTATAAGAATG
1 TACCTAAAGGTTTT-GGAG-ATG
*
22545788 TACCCAAAGGTTTT-GAGAATG
1 TACCTAAAGGTTTTGGAG-ATG
* **
22545809 TACTTGGAGGTTTTGGAGATG
1 TACCTAAAGGTTTTGGAGATG
* * *
22545830 TACCTAAAGGTCTTAGAGATA
1 TACCTAAAGGTTTTGGAGATG
22545851 TACCTA
1 TACCTA
22545857 GAGATTTTAT
Statistics
Matches: 72, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
21 40 0.56
22 17 0.24
23 15 0.21
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (21 bp):
TACCTAAAGGTTTTGGAGATG
Found at i:22553227 original size:22 final size:22
Alignment explanation
Indices: 22553185--22553225 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22553175 TACCTTTTGT
*
22553185 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22553207 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22553226 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22555138 original size:18 final size:20
Alignment explanation
Indices: 22555115--22555158 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
22555105 TTAAACATGA
22555115 AATGAATAA-ATG-CATATG
1 AATGAATAATATGTCATATG
22555133 AATGAA-AATATGTCATATG
1 AATGAATAATATGTCATATG
*
22555152 CATGAAT
1 AATGAAT
22555159 GCGTGAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 2 0.09
18 9 0.41
19 11 0.50
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.30
Consensus pattern (20 bp):
AATGAATAATATGTCATATG
Found at i:22558380 original size:19 final size:19
Alignment explanation
Indices: 22558356--22558393 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22558346 TCATTTGACT
*
22558356 TATTGGATTATGATTTGAG
1 TATTGGAGTATGATTTGAG
22558375 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
22558394 GTTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:22559650 original size:13 final size:13
Alignment explanation
Indices: 22559632--22559656 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22559622 GGAGAAATTG
22559632 TGATTTTATAAAA
1 TGATTTTATAAAA
22559645 TGATTTTATAAA
1 TGATTTTATAAA
22559657 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:22570886 original size:2 final size:2
Alignment explanation
Indices: 22570879--22570926 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
22570869 AACCTACCTA
22570879 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22570921 CT CT CT
1 CT CT CT
22570927 AGTTTTTTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:22572016 original size:19 final size:19
Alignment explanation
Indices: 22571992--22572029 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22571982 TATTAAAGTT
22571992 CTTTCTTG-TTATCTTTTTA
1 CTTTCTTGTTTAT-TTTTTA
22572011 CTTTCTTGTTTATTTTTTA
1 CTTTCTTGTTTATTTTTTA
22572030 TGTTTATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.11, C:0.13, G:0.05, T:0.71
Consensus pattern (19 bp):
CTTTCTTGTTTATTTTTTA
Found at i:22573730 original size:27 final size:28
Alignment explanation
Indices: 22573689--22573761 Score: 121
Period size: 27 Copynumber: 2.6 Consensus size: 28
22573679 TGGCAGTTTC
22573689 AACATGTTTGTCTTAATTTAAACAAGAA
1 AACATGTTTGTCTTAATTTAAACAAGAA
*
22573717 AACATG-TTGTCTTAATTTAGACAAGAA
1 AACATGTTTGTCTTAATTTAAACAAGAA
*
22573744 AATATGTTTGTCTTAATT
1 AACATGTTTGTCTTAATT
22573762 AAAGATAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (28 bp):
AACATGTTTGTCTTAATTTAAACAAGAA
Found at i:22573824 original size:28 final size:26
Alignment explanation
Indices: 22573701--22573839 Score: 91
Period size: 28 Copynumber: 4.9 Consensus size: 26
22573691 CATGTTTGTC
* *
22573701 TTAATTTAAACAAGAAAACATGTTGTC-
1 TTAATTTAGACAAGAAAA-ATATT-TCT
* *
22573728 TTAATTTAGACAAGAAAATATGTTTGT
1 TTAATTTAGACAAGAAAA-ATATTTCT
* *
22573755 CTTAATTAAAGATAAGAAAAATATTTTTTCT
1 -TTAATT-TAGACAAGAAAAATA---TTTCT
* *
22573786 CTTAATCTAGATAAGAAAACATATTTCT
1 -TTAATTTAGACAAGAAAA-ATATTTCT
22573814 TTCAATTTAGACAAGATAAAATATTT
1 TT-AATTTAGACAAGA-AAAATATTT
22573840 TTGTCCTATT
Statistics
Matches: 92, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 24 0.26
28 30 0.33
29 13 0.14
30 11 0.12
31 13 0.14
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (26 bp):
TTAATTTAGACAAGAAAAATATTTCT
Found at i:22574024 original size:17 final size:17
Alignment explanation
Indices: 22574002--22574034 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22573992 ATAATAATAA
22574002 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
22574019 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
22574035 TATCAAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:22586821 original size:3 final size:3
Alignment explanation
Indices: 22586813--22586853 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
22586803 ATATAGTTAT
* * *
22586813 TAC TAC TAC TAC TAC TAC TAT TAT TAC TAT TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
22586854 GAGATAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.41
Consensus pattern (3 bp):
TAC
Found at i:22587250 original size:2 final size:2
Alignment explanation
Indices: 22587243--22587276 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
22587233 TTCTAGGACC
22587243 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22587277 GAGCTCTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22588310 original size:16 final size:15
Alignment explanation
Indices: 22588271--22588336 Score: 62
Period size: 17 Copynumber: 4.1 Consensus size: 15
22588261 TTTTTACTAC
22588271 AAAAT-AAATAATATA
1 AAAATAAAATAA-ATA
22588286 GAGAAATAAAATAAATA
1 -A-AAATAAAATAAATA
*
22588303 ATAAATAAAAATAACTA
1 A-AAAT-AAAATAAATA
*
22588320 AAAAGAAAATAAATA
1 AAAATAAAATAAATA
22588335 AA
1 AA
22588337 GAAAAAGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
15 11 0.26
16 9 0.21
17 17 0.40
18 6 0.14
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.20
Consensus pattern (15 bp):
AAAATAAAATAAATA
Found at i:22588314 original size:22 final size:22
Alignment explanation
Indices: 22588271--22588316 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
22588261 TTTTTACTAC
* *
22588271 AAAATAAATAATATAGAGAAAT
1 AAAATAAATAATAAAGAAAAAT
*
22588293 AAAATAAATAATAAATAAAAAT
1 AAAATAAATAATAAAGAAAAAT
22588315 AA
1 AA
22588317 CTAAAAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (22 bp):
AAAATAAATAATAAAGAAAAAT
Found at i:22588690 original size:10 final size:9
Alignment explanation
Indices: 22588675--22588701 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22588665 AAAAAAATTC
22588675 TTTTTTTAA
1 TTTTTTTAA
22588684 TTTTTTTAA
1 TTTTTTTAA
22588693 TTTTTTTAA
1 TTTTTTTAA
22588702 AAAAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:22589295 original size:21 final size:21
Alignment explanation
Indices: 22589269--22589310 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
22589259 TTTGAAAGAT
22589269 GGCATCAGTCCTTGTCATGAA
1 GGCATCAGTCCTTGTCATGAA
*
22589290 GGCATCAGTCTTTGTCATGAA
1 GGCATCAGTCCTTGTCATGAA
22589311 TTGTATGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (21 bp):
GGCATCAGTCCTTGTCATGAA
Found at i:22601592 original size:20 final size:20
Alignment explanation
Indices: 22601567--22601612 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
22601557 TTTTGACCCC
22601567 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
22601587 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
22601607 ATTTGA
1 ATTTGA
22601613 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:22611840 original size:30 final size:30
Alignment explanation
Indices: 22611804--22611876 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
22611794 TGGCAGGTTC
22611804 CTTCTCGTCCTCTGTCACCACCACCTCTTT
1 CTTCTCGTCCTCTGTCACCACCACCTCTTT
* *
22611834 CTTCTCGTTCTCTGTCACCACCAGCTCTTT
1 CTTCTCGTCCTCTGTCACCACCACCTCTTT
22611864 CTTCTCGTCCTCT
1 CTTCTCGTCCTCT
22611877 TTAGCTGCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.08, C:0.44, G:0.08, T:0.40
Consensus pattern (30 bp):
CTTCTCGTCCTCTGTCACCACCACCTCTTT
Found at i:22613425 original size:42 final size:39
Alignment explanation
Indices: 22613366--22613688 Score: 223
Period size: 42 Copynumber: 7.6 Consensus size: 39
22613356 TTATATTACT
22613366 TGTAAAATTTTTATATTAGTTGAACTTACAAACTAACAAA
1 TGTAAAATTTTTATATTAGTTGAACTTACAAACTAA-AAA
* *
22613406 TGTAAAATTAATTTATATTACTTGAACTATGATGCAAACTTAAATA
1 TGTAAAATT--TTTATATTAGTTGAACT-T-A--CAAAC-TAAAAA
* **
22613452 TATAAAATTTTTATATTAGTTGAACTTGTAAACTAATAAA
1 TGTAAAATTTTTATATTAGTTGAACTTACAAACTAA-AAA
* * *
22613492 TGTAAAATTTATTTATATTACTTGAATTATGATACAAACTTAAATA
1 TGTAAAA-TT-TTTATATTAGTTGAA--CT--TACAAAC-TAAAAA
* **
22613538 TATAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAA
1 TGTAAAATTTTTATATTAGTTGAACTTACAAACTAA-AAA
* * * *
22613578 TGCAAAATTAATTTATATTACTTAAACTATGATACAAACTTAAATA
1 TGTAAAATT--TTTATATTAGTTGAAC--T--TACAAAC-TAAAAA
* * **
22613624 TATAAAATTTTTATCTTAGTTGAACTTGTAAACTAACAAA
1 TGTAAAATTTTTATATTAGTTGAACTTACAAACTAA-AAA
*
22613664 TGTAAAATTAATTTATATTATTTGA
1 TGTAAAATT--TTTATATTAGTTGA
22613689 GATATGATGC
Statistics
Matches: 220, Mismatches: 37, Indels: 50
0.72 0.12 0.16
Matches are distributed among these distances:
39 9 0.04
40 50 0.23
41 2 0.01
42 58 0.26
43 2 0.01
44 46 0.21
45 2 0.01
46 42 0.19
47 9 0.04
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (39 bp):
TGTAAAATTTTTATATTAGTTGAACTTACAAACTAAAAA
Found at i:22613513 original size:86 final size:86
Alignment explanation
Indices: 22613368--22613696 Score: 552
Period size: 86 Copynumber: 3.8 Consensus size: 86
22613358 ATATTACTTG
**
22613368 TAAAATTTTTATATTAGTTGAACTTACAAACTAACAAATGTAAAATTAATTTATATTACTTGAAC
1 TAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAATGTAAAATTAATTTATATTACTTGAAC
*
22613433 TATGATGCAAACTTAAATATA
66 TATGATACAAACTTAAATATA
* * *
22613454 TAAAATTTTTATATTAGTTGAACTTGTAAACTAATAAATGTAAAATTTATTTATATTACTTGAAT
1 TAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAATGTAAAATTAATTTATATTACTTGAAC
22613519 TATGATACAAACTTAAATATA
66 TATGATACAAACTTAAATATA
* *
22613540 TAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAATGCAAAATTAATTTATATTACTTAAAC
1 TAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAATGTAAAATTAATTTATATTACTTGAAC
22613605 TATGATACAAACTTAAATATA
66 TATGATACAAACTTAAATATA
* *
22613626 TAAAATTTTTATCTTAGTTGAACTTGTAAACTAACAAATGTAAAATTAATTTATATTATTTGAGA
1 TAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAATGTAAAATTAATTTATATTACTTGA-A
22613691 -TATGAT
65 CTATGAT
22613697 GCAACATAAT
Statistics
Matches: 227, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
86 226 1.00
87 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (86 bp):
TAAAATTTTTATATTAGTTGAACTTGTAAACTAACAAATGTAAAATTAATTTATATTACTTGAAC
TATGATACAAACTTAAATATA
Found at i:22624642 original size:25 final size:25
Alignment explanation
Indices: 22624614--22624703 Score: 69
Period size: 25 Copynumber: 3.6 Consensus size: 25
22624604 GGGCATTACG
22624614 TGACTGTTATCTGTATTGCATTGCA
1 TGACTGTTATCTGTATTGCATTGCA
** *
22624639 TGACCATTATATGTAGGTT--ATTGCA
1 TGACTGTTATCTGTA--TTGCATTGCA
** ***
22624664 TGACTGTTA-CTGTAAGGCATTATG
1 TGACTGTTATCTGTATTGCATTGCA
22624688 TGACTGTTATCTGTAT
1 TGACTGTTATCTGTAT
22624704 GAAAGTGTGT
Statistics
Matches: 48, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
24 16 0.33
25 30 0.62
27 2 0.04
ACGTcount: A:0.23, C:0.13, G:0.21, T:0.42
Consensus pattern (25 bp):
TGACTGTTATCTGTATTGCATTGCA
Found at i:22626470 original size:12 final size:12
Alignment explanation
Indices: 22626449--22626486 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
22626439 CAGTCACTGT
*
22626449 AGATGGAGATGC
1 AGATGTAGATGC
*
22626461 AGATGTAGATAC
1 AGATGTAGATGC
22626473 AGATGTAGATGC
1 AGATGTAGATGC
22626485 AG
1 AG
22626487 TCCATGTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.21
Consensus pattern (12 bp):
AGATGTAGATGC
Found at i:22632367 original size:35 final size:35
Alignment explanation
Indices: 22632339--22632424 Score: 163
Period size: 35 Copynumber: 2.5 Consensus size: 35
22632329 ATTTTTAAAA
22632339 GGCTCAACCACAACCTTTCACAATGATTTTTCACG
1 GGCTCAACCACAACCTTTCACAATGATTTTTCACG
22632374 GGCTCAACCACAACCTTTCACAATGATTTTTCACG
1 GGCTCAACCACAACCTTTCACAATGATTTTTCACG
*
22632409 GGCTCAACCAAAACCT
1 GGCTCAACCACAACCT
22632425 CAAGTGGTTG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.26
Consensus pattern (35 bp):
GGCTCAACCACAACCTTTCACAATGATTTTTCACG
Found at i:22632371 original size:371 final size:371
Alignment explanation
Indices: 22631683--22632388 Score: 1155
Period size: 371 Copynumber: 1.9 Consensus size: 371
22631673 CCAAAGGGGG
*
22631683 GGGGGGTGAATAACACTTTTTGGCTCTTGGCAAGATAAGGAACTAATTTAAAAAGCAATGAAAAT
1 GGGGGGTGAATAACACTTTTTGGCTCTTGGCAAGATAAGGAACTAATTTAAAAAACAATGAAAAT
* *
22631748 AAAAACAGAGTAGACAATGCGCAAGAATTTAGAGTGGTTCGATCCAAGACATATATCCACTATCT
66 AAAAACAGAGTAGACAATGCGCAAGAATTTAGAGTGGTTCGATCCAAGACATACATCCACTACCT
* *
22631813 TGATTATTCAACCAAGGATTTTCCAAATAATCCACTATGAACGGTGAAATTCACAACTTTCACCA
131 TAATTATTCAACCAAGGATTTTCCAAACAATCCACTATGAACGGTGAAATTCACAACTTTCACCA
* * *
22631878 AGCTTTTACAACGGCTTTTACCAGGTTTAGTCAAAACCTTTCACAATAGTTTTTACTGGGATCAA
196 AGCTTTTACAACGGCTTTTACCAAGTTTAGTCAAAACCTTTCACAATAATTTTTACCGGGATCAA
* * *
22631943 CTAAAACCCAAAGTGATTTTTCAAAGGCTCAACCATAACCTTTCACAATGGTTTTTCACAGGCTC
261 CTAAAACCCAAAGTGATTTTTAAAAGGCTCAACCACAACCTTTCACAATGATTTTTCACAGGCTC
22632008 AACCAAAACCCAAAGTGGTTGTTGGTCCTAAGTAAATATGCCAGAA
326 AACCAAAACCCAAAGTGGTTGTTGGTCCTAAGTAAATATGCCAGAA
* *
22632054 GGGGGGTGAATAACAGTTTTTGGCTTTTGGCAAGATAATGG-ACTAATTTAAAAAACAATGAAAA
1 GGGGGGTGAATAACACTTTTTGGCTCTTGGCAAGATAA-GGAACTAATTTAAAAAACAATGAAAA
* * * * *
22632118 TAAAAATAGAGTAGACAATGTGCAGGAATTTCGAGTGGTTCGATCCAAGATC-TACATCCATTAC
65 TAAAAACAGAGTAGACAATGCGCAAGAATTTAGAGTGGTTCGATCCAAGA-CATACATCCACTAC
*
22632182 CTTAATTGTTCAACCAAGGATTTTCCAAACAATCCACTATGAACGGTGAAATTCACAACTTTCAC
129 CTTAATTATTCAACCAAGGATTTTCCAAACAATCCACTATGAACGGTGAAATTCACAACTTTCAC
* * * *
22632247 CAAGCTTTTACAATGGCTTTTACCAAGTTTAGTTAAAACCTTTTATAATAATTTTTACCGGGATC
194 CAAGCTTTTACAACGGCTTTTACCAAGTTTAGTCAAAACCTTTCACAATAATTTTTACCGGGATC
*
22632312 AACTAAAACCCAAAGTGATTTTTAAAAGGCTCAACCACAACCTTTCACAATGATTTTTCACGGGC
259 AACTAAAACCCAAAGTGATTTTTAAAAGGCTCAACCACAACCTTTCACAATGATTTTTCACAGGC
*
22632377 TCAACCACAACC
324 TCAACCAAAACC
22632389 TTTCACAATG
Statistics
Matches: 308, Mismatches: 25, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
371 305 0.99
372 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (371 bp):
GGGGGGTGAATAACACTTTTTGGCTCTTGGCAAGATAAGGAACTAATTTAAAAAACAATGAAAAT
AAAAACAGAGTAGACAATGCGCAAGAATTTAGAGTGGTTCGATCCAAGACATACATCCACTACCT
TAATTATTCAACCAAGGATTTTCCAAACAATCCACTATGAACGGTGAAATTCACAACTTTCACCA
AGCTTTTACAACGGCTTTTACCAAGTTTAGTCAAAACCTTTCACAATAATTTTTACCGGGATCAA
CTAAAACCCAAAGTGATTTTTAAAAGGCTCAACCACAACCTTTCACAATGATTTTTCACAGGCTC
AACCAAAACCCAAAGTGGTTGTTGGTCCTAAGTAAATATGCCAGAA
Found at i:22633168 original size:28 final size:30
Alignment explanation
Indices: 22633127--22633191 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
22633117 GTCTATGGGC
*
22633127 AATTTTTCAGTTTT-T-GGGGCAAAAATGT
1 AATTTTTCACTTTTATAGGGGCAAAAATGT
* *
22633155 AATTTTTGACTTTTATAGGGGCAAAAGTGT
1 AATTTTTCACTTTTATAGGGGCAAAAATGT
*
22633185 AAATTTT
1 AATTTTT
22633192 AAAAAATTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 12 0.39
29 1 0.03
30 18 0.58
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (30 bp):
AATTTTTCACTTTTATAGGGGCAAAAATGT
Found at i:22635848 original size:32 final size:32
Alignment explanation
Indices: 22635810--22635913 Score: 102
Period size: 32 Copynumber: 3.2 Consensus size: 32
22635800 TTTACCGGGA
*
22635810 TCAACTAAAACCCAAAGTGATTTTTCAAAGGC
1 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
* * **
22635842 TTAACTACAACCTTTCACAA-TGGTTTTTCACGGGC
1 TCAACTAAAACC---CA-AAGTGGTTTTTCAAAGGC
* *
22635877 TCAACCAAAACCCAAAGTGGTTTGTCAAAGGC
1 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
22635909 TCAAC
1 TCAAC
22635914 CACAACTTAC
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
31 2 0.04
32 29 0.52
35 23 0.41
36 2 0.04
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (32 bp):
TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
Found at i:22635869 original size:35 final size:34
Alignment explanation
Indices: 22635830--22635938 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 34
22635820 CCCAAAGTGA
* *
22635830 TTTTTCAAAGGCTTAACTACAACCTTTCACAATGG
1 TTTTTCAAAGGCTCAACCACAACC-TTCACAATGG
** *
22635865 TTTTTCACGGGCTCAACCAAAACC--CA-AAGTGG
1 TTTTTCAAAGGCTCAACCACAACCTTCACAA-TGG
*
22635897 TTTGTCAAAGGCTCAACCACAA-CTTACAGCAATGG
1 TTTTTCAAAGGCTCAACCACAACCTT-CA-CAATGG
22635932 TTTTTCA
1 TTTTTCA
22635939 CGGGATCAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
31 3 0.05
32 23 0.40
34 2 0.03
35 28 0.48
36 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (34 bp):
TTTTTCAAAGGCTCAACCACAACCTTCACAATGG
Found at i:22635891 original size:67 final size:67
Alignment explanation
Indices: 22635783--22635958 Score: 248
Period size: 67 Copynumber: 2.6 Consensus size: 67
22635773 GTTTAGTCAA
* * * *
22635783 AACCTTTCACAATAGTTTTT-ACCGGGATCAACTAAAACCCAAAGTGATTTTTCAAAGGCTTAAC
1 AACCTTTCACAATGGTTTTTCA-CGGGATCAACCAAAACCCAAAGTGATTTGTCAAAGGCTCAAC
*
22635847 TAC
65 CAC
* *
22635850 AACCTTTCACAATGGTTTTTCACGGGCTCAACCAAAACCCAAAGTGGTTTGTCAAAGGCTCAACC
1 AACCTTTCACAATGGTTTTTCACGGGATCAACCAAAACCCAAAGTGATTTGTCAAAGGCTCAACC
22635915 AC
66 AC
*
22635917 AA-CTTACAGCAATGGTTTTTCACGGGATCAACCAAAACCCAA
1 AACCTTTCA-CAATGGTTTTTCACGGGATCAACCAAAACCCAA
22635959 CACCTAACTT
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
66 5 0.05
67 92 0.94
68 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (67 bp):
AACCTTTCACAATGGTTTTTCACGGGATCAACCAAAACCCAAAGTGATTTGTCAAAGGCTCAACC
AC
Found at i:22635948 original size:35 final size:32
Alignment explanation
Indices: 22635857--22635954 Score: 99
Period size: 32 Copynumber: 3.0 Consensus size: 32
22635847 TACAACCTTT
*
22635857 CACAATGGTTTTTCACGGGCTCAACCAAAACC
1 CACAATGGTTTTTCACGGGCTCAACCAAAACA
* ** *
22635889 CA-AAGTGGTTTGTCAAAGGCTCAACCACAACTTA
1 CACAA-TGGTTTTTCACGGGCTCAACCAAAAC--A
*
22635923 CAGCAATGGTTTTTCACGGGATCAACCAAAAC
1 CA-CAATGGTTTTTCACGGGCTCAACCAAAAC
22635955 CCAACACCTA
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
31 2 0.04
32 24 0.47
34 2 0.04
35 21 0.41
36 2 0.04
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (32 bp):
CACAATGGTTTTTCACGGGCTCAACCAAAACA
Found at i:22636515 original size:73 final size:73
Alignment explanation
Indices: 22636381--22636569 Score: 202
Period size: 73 Copynumber: 2.6 Consensus size: 73
22636371 TAGAGAGCTT
* * * * **
22636381 TTAGTCGACTAACTTCCTTCTTAGTCGATTAAGTTGGTTCTATCTTCTGGTCTCAGCTTTTGGCA
1 TTAGTCGACTAACTTACTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTCTCAGCTTTTGGCA
22636446 GAGAAC-AC
66 -AGAACTAC
* * * *
22636454 TTAGTCGACTAACTTATTTCTTGGTCAACTAAGTTGGTTCTGTCTTGAAGTCT-AGATTTTTGGC
1 TTAGTCGACTAACTTACTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTCTCAG-CTTTTGGC
* * *
22636518 AATAGCTTC
65 AAGAACTAC
* * *
22636527 TTAGTCAACTAACTCACTTCTTGGTTGACTAAGTTGGTTCTGT
1 TTAGTCGACTAACTTACTTCTTGGTCGACTAAGTTGGTTCTGT
22636570 TTCTCAATAC
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
72 5 0.05
73 91 0.95
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (73 bp):
TTAGTCGACTAACTTACTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTCTCAGCTTTTGGCA
AGAACTAC
Found at i:22657965 original size:22 final size:22
Alignment explanation
Indices: 22657923--22657963 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22657913 TACCTTTTGT
*
22657923 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22657945 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22657964 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22658278 original size:28 final size:28
Alignment explanation
Indices: 22658219--22658278 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
22658209 TGGGTGGTGT
* * * *
22658219 AAAATTACCATTTTGCCCTTAGGGTGGT
1 AAAATGACCATTTTGCCCTTAGGCTCGA
* *
22658247 AAAATGACTATTTTGCCCTTATGCTCGA
1 AAAATGACCATTTTGCCCTTAGGCTCGA
22658275 AAAA
1 AAAA
22658279 ATGCCGGAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (28 bp):
AAAATGACCATTTTGCCCTTAGGCTCGA
Found at i:22664011 original size:19 final size:19
Alignment explanation
Indices: 22663987--22664032 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
22663977 GTATGCGAGT
*
22663987 ATAAAACACATAATTCATA
1 ATAAAAAACATAATTCATA
22664006 ATAAAAAACATAATTCATA
1 ATAAAAAACATAATTCATA
22664025 ATAAAAAA
1 ATAAAAAA
22664033 TAAGTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (19 bp):
ATAAAAAACATAATTCATA
Found at i:22665988 original size:22 final size:22
Alignment explanation
Indices: 22665946--22665986 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22665936 TACCTTTTGT
*
22665946 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22665968 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22665987 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22677253 original size:42 final size:42
Alignment explanation
Indices: 22677201--22677324 Score: 167
Period size: 42 Copynumber: 3.0 Consensus size: 42
22677191 ATCTCATATG
* *
22677201 CAACGGCTTATGTGTACTCCCACTCGCACATAGCCAGGTCAA
1 CAACGACTTATGTGCACTCCCACTCGCACATAGCCAGGTCAA
* * *
22677243 CAACGACTTATGTGCACTCCCACTCGCACATAACCAAGTCAG
1 CAACGACTTATGTGCACTCCCACTCGCACATAGCCAGGTCAA
* * * *
22677285 CAATGACTTATGTGCACTCCTACTAGCACATAGCTAGGTC
1 CAACGACTTATGTGCACTCCCACTCGCACATAGCCAGGTC
22677325 CACATCAACA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (42 bp):
CAACGACTTATGTGCACTCCCACTCGCACATAGCCAGGTCAA
Found at i:22679969 original size:81 final size:81
Alignment explanation
Indices: 22679884--22680103 Score: 338
Period size: 78 Copynumber: 2.8 Consensus size: 81
22679874 GCCTATGTGG
*
22679884 GCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGCGCGATGTGGGGGTGCACACGATGATGAT
1 GCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGAGCGATGTGGGGGTGCACACGATGATGAT
*
22679949 GATATATGCCATGTAT
66 GATATATGCCATGTAC
22679965 GCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGAGCGATGTGGGGGTGCACAC---GATGAT
1 GCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGAGCGATGTGGGGGTGCACACGATGATGAT
22680027 GATATATGCCATGTAC
66 GATATATGCCATGTAC
* * * * * * *
22680043 GTGATATAGGGGGAGCACATGATGGCTTTATTTGTGTGCGATATGGGGGTGCACACGATGA
1 GCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGAGCGATGTGGGGGTGCACACGATGA
22680104 CTACGGCTAT
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
78 70 0.55
81 57 0.45
ACGTcount: A:0.23, C:0.13, G:0.38, T:0.26
Consensus pattern (81 bp):
GCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGAGCGATGTGGGGGTGCACACGATGATGAT
GATATATGCCATGTAC
Found at i:22679987 original size:42 final size:41
Alignment explanation
Indices: 22679921--22680066 Score: 119
Period size: 42 Copynumber: 3.6 Consensus size: 41
22679911 TTAGTTGTGC
22679921 GCGATGTGGGGGTGCA-CACGATGATGATGATATATGCCATGTA
1 GCGATGTGGGGG-G-AGCAC-ATGATGATGATATATGCCATGTA
*
22679964 TGCGATGTGGGGGGAGCACATGATG--GCAT-TA-G--TTGTGA
1 -GCGATGTGGGGGGAGCACATGATGATG-ATATATGCCATGT-A
* *
22680002 GCGATGT-GGGGGTGCACACGATGATGATATATGCCATGTA
1 GCGATGTGGGGGGAGCACATGATGATGATATATGCCATGTA
* * *
22680042 CGTGATATAGGGGGAGCACATGATG
1 -GCGATGTGGGGGGAGCACATGATG
22680067 GCTTTATTTG
Statistics
Matches: 83, Mismatches: 8, Indels: 24
0.72 0.07 0.21
Matches are distributed among these distances:
36 14 0.17
37 12 0.14
38 4 0.05
39 2 0.02
40 4 0.05
41 10 0.12
42 21 0.25
43 4 0.05
44 12 0.14
ACGTcount: A:0.25, C:0.13, G:0.38, T:0.25
Consensus pattern (41 bp):
GCGATGTGGGGGGAGCACATGATGATGATATATGCCATGTA
Found at i:22680013 original size:36 final size:37
Alignment explanation
Indices: 22679879--22680024 Score: 120
Period size: 36 Copynumber: 3.8 Consensus size: 37
22679869 AGGTTGCCTA
* *
22679879 TGTGGGCGATGTGGGGGGAGCACATGATGGCATTAGT
1 TGTGAGCGATGTGGGGGGAGCACACGATGGCATTAGT
* *
22679916 TGTGCGCGATGT-GGGGGTGCACACGATGATG-ATGATA-T
1 TGTGAGCGATGTGGGGGGAGCACACGATG--GCAT--TAGT
*
22679954 ATGCCATGTATGCGATGTGGGGGGAGCACATGATGGCATTAGT
1 -TG---TG-A-GCGATGTGGGGGGAGCACACGATGGCATTAGT
*
22679997 TGTGAGCGATGT-GGGGGTGCACACGATG
1 TGTGAGCGATGTGGGGGGAGCACACGATG
22680025 ATGATATATG
Statistics
Matches: 88, Mismatches: 8, Indels: 27
0.72 0.07 0.22
Matches are distributed among these distances:
36 28 0.32
37 20 0.23
38 3 0.03
39 6 0.07
42 6 0.07
43 2 0.02
44 9 0.10
45 14 0.16
ACGTcount: A:0.21, C:0.13, G:0.42, T:0.25
Consensus pattern (37 bp):
TGTGAGCGATGTGGGGGGAGCACACGATGGCATTAGT
Found at i:22680026 original size:39 final size:37
Alignment explanation
Indices: 22679879--22680013 Score: 132
Period size: 37 Copynumber: 3.5 Consensus size: 37
22679869 AGGTTGCCTA
*
22679879 TGTGGGCGATGTGGGGGGAGCACATGATGGCATTAGT
1 TGTGAGCGATGTGGGGGGAGCACATGATGGCATTAGT
* *
22679916 TGTGCGCGATGTGGGGGTGCA-CACGATGATGATG-ATATATGCCA
1 TGTGAGCGATGTGGGGG-G-AGCAC-ATGATG--GCAT-TA-G--T
22679960 TGT-ATGCGATGTGGGGGGAGCACATGATGGCATTAGT
1 TGTGA-GCGATGTGGGGGGAGCACATGATGGCATTAGT
22679997 TGTGAGCGATGTGGGGG
1 TGTGAGCGATGTGGGGG
22680014 TGCACACGAT
Statistics
Matches: 81, Mismatches: 4, Indels: 26
0.73 0.04 0.23
Matches are distributed among these distances:
37 31 0.38
38 5 0.06
39 8 0.10
40 5 0.06
41 5 0.06
42 8 0.10
43 4 0.05
44 15 0.19
ACGTcount: A:0.20, C:0.12, G:0.43, T:0.25
Consensus pattern (37 bp):
TGTGAGCGATGTGGGGGGAGCACATGATGGCATTAGT
Found at i:22680279 original size:19 final size:22
Alignment explanation
Indices: 22680255--22680300 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
22680245 ATTAAAAAAA
*
22680255 CTTGA-TTATTGT-CAATGT-G
1 CTTGATTTAATGTACAATGTGG
22680274 CTTGATTTAATGTACAATGTGG
1 CTTGATTTAATGTACAATGTGG
22680296 CTTGA
1 CTTGA
22680301 GTGGATTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 5 0.22
20 6 0.26
21 6 0.26
22 6 0.26
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (22 bp):
CTTGATTTAATGTACAATGTGG
Found at i:22682561 original size:2 final size:2
Alignment explanation
Indices: 22682556--22682642 Score: 131
Period size: 2 Copynumber: 44.0 Consensus size: 2
22682546 AAATGTTTTG
**
22682556 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CN
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
22682598 TT TG T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22682639 TA TA
1 TA TA
22682643 CACTAGATAT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
1 1 0.01
2 78 0.99
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22683081 original size:25 final size:25
Alignment explanation
Indices: 22683048--22683100 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
22683038 GATATGTATA
*
22683048 TGGCAAGGCCACGGGATGATATACG
1 TGGCAAGGCCAAGGGATGATATACG
* * *
22683073 TGGCTAGGCCAATGGTTGATATACG
1 TGGCAAGGCCAAGGGATGATATACG
22683098 TGG
1 TGG
22683101 TTACGACCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.36, T:0.23
Consensus pattern (25 bp):
TGGCAAGGCCAAGGGATGATATACG
Found at i:22685961 original size:23 final size:23
Alignment explanation
Indices: 22685931--22685981 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
22685921 TTTTCATCTA
* *
22685931 GCATTGCGT-GAGTTGTTGATAGT
1 GCATTGCGTGGA-TAGTTAATAGT
22685954 GCATTGCGTGGATAGTTAATAGT
1 GCATTGCGTGGATAGTTAATAGT
22685977 GCATT
1 GCATT
22685982 ACCTGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.22, C:0.10, G:0.31, T:0.37
Consensus pattern (23 bp):
GCATTGCGTGGATAGTTAATAGT
Found at i:22688522 original size:2 final size:2
Alignment explanation
Indices: 22688517--22688561 Score: 63
Period size: 2 Copynumber: 22.0 Consensus size: 2
22688507 CAAACCTCTC
* *
22688517 TA TA TA GTA AA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22688560 TA
1 TA
22688562 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
TA
Found at i:22688621 original size:2 final size:2
Alignment explanation
Indices: 22688601--22688646 Score: 67
Period size: 2 Copynumber: 23.0 Consensus size: 2
22688591 NNNCCTACTC
*
22688601 TA TA TA GTA -A TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22688643 TA TA
1 TA TA
22688647 AACACGTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 1 0.03
2 37 0.93
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:22693637 original size:42 final size:42
Alignment explanation
Indices: 22693578--22693666 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
22693568 GATTGTGTTT
*
22693578 ATGATGTAAATTCCATATACCATATGAGATGATTAAGTATGC
1 ATGATGTAAATTCCATATACCATATAAGATGATTAAGTATGC
* ** *
22693620 ATGATGTAAATTTCATATACTGTATAAGGTGATTAAGTATGC
1 ATGATGTAAATTCCATATACCATATAAGATGATTAAGTATGC
22693662 ATGAT
1 ATGAT
22693667 AAATGCCATG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (42 bp):
ATGATGTAAATTCCATATACCATATAAGATGATTAAGTATGC
Found at i:22695065 original size:35 final size:35
Alignment explanation
Indices: 22695026--22695133 Score: 128
Period size: 35 Copynumber: 3.1 Consensus size: 35
22695016 CTTACTCAGC
22695026 TCATGTGCACTCCCTACACACACAAGGT-AATATCA
1 TCATGTGCACTCCCTACACACAC-AGGTCAATATCA
* * **
22695061 TCATGTGCACTCCTTACACGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACACACAGGTCAATATCA
* * **
22695096 TCATGTGCACTCCCTACACGCATATTTCAATATCA
1 TCATGTGCACTCCCTACACACACAGGTCAATATCA
22695131 TCA
1 TCA
22695134 GACGCACACT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
34 2 0.03
35 64 0.97
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (35 bp):
TCATGTGCACTCCCTACACACACAGGTCAATATCA
Found at i:22696714 original size:2 final size:2
Alignment explanation
Indices: 22696702--22696778 Score: 120
Period size: 2 Copynumber: 39.0 Consensus size: 2
22696692 AGGGAAATCA
* *
22696702 CT CT CT TT CT CT CN CT CT CT -T CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
22696743 CT CT CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22696779 ACACGTCTAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
1 1 0.01
2 67 0.99
ACGTcount: A:0.00, C:0.47, G:0.01, T:0.51
Consensus pattern (2 bp):
CT
Found at i:22716704 original size:2 final size:2
Alignment explanation
Indices: 22716697--22716760 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
22716687 NTGTATAGCT
22716697 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22716739 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
22716761 CACCACCGCC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22720934 original size:14 final size:14
Alignment explanation
Indices: 22720915--22720957 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
22720905 TTGACTCACC
22720915 TAAAATAACTAATT
1 TAAAATAACTAATT
* *
22720929 TAAAATAATTAA-A
1 TAAAATAACTAATT
22720942 TAAAATTAACTAATT
1 TAAAA-TAACTAATT
22720957 T
1 T
22720958 CTATGCATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 5 0.22
14 17 0.74
15 1 0.04
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAAATAACTAATT
Found at i:22722454 original size:49 final size:49
Alignment explanation
Indices: 22722368--22722477 Score: 130
Period size: 49 Copynumber: 2.2 Consensus size: 49
22722358 TGCATAATCA
* ** *
22722368 ACATCATAACATTGTCTGAAATCATCCACAAATAGAACATACATACCTC
1 ACATCATATCATTGTCCAAAATCATCCACAAACAGAACATACATACCTC
* * * * *
22722417 ACATCATATCATTGTCCAAAATCATCTACGAGCAGAACATATATATCTC
1 ACATCATATCATTGTCCAAAATCATCCACAAACAGAACATACATACCTC
*
22722466 ATATCATATCAT
1 ACATCATATCAT
22722478 CATTCGGAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (49 bp):
ACATCATATCATTGTCCAAAATCATCCACAAACAGAACATACATACCTC
Found at i:22725623 original size:20 final size:20
Alignment explanation
Indices: 22725574--22725636 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
22725564 GGGAGTGCGC
*
22725574 ATGAGTTGGTGATGATGATG
1 ATGAGTTGGTGATGATGATA
*
22725594 ATGAGCTGGTGATGATGATA
1 ATGAGTTGGTGATGATGATA
*
22725614 ATG-GATTGGTG-TGATGATT
1 ATGAG-TTGGTGATGATGATA
22725633 ATGA
1 ATGA
22725637 TGGGTATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.30
20 26 0.70
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.35
Consensus pattern (20 bp):
ATGAGTTGGTGATGATGATA
Found at i:22725653 original size:2 final size:2
Alignment explanation
Indices: 22725641--22725675 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
22725631 TTATGATGGG
* *
22725641 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22725676 GTAAATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:22732352 original size:43 final size:43
Alignment explanation
Indices: 22732234--22732355 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
22732224 TGACTCGGCT
* * **
22732234 ATGTGCGAGTAGAGAGTGCGCATAAGCTGAG-GATGACCCGGTT
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTG-GTGATGACCCAGCC
* * * *
22732277 ATATGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCTAGCC
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
* *
22732320 ATGTGCGAGTAGGGAGGGCGCATGAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGA
22732356 TAATGATGGG
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.02
43 64 0.98
ACGTcount: A:0.25, C:0.17, G:0.39, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
Found at i:22736312 original size:22 final size:22
Alignment explanation
Indices: 22736287--22736335 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
22736277 ATCCAATCAT
*
22736287 GCAATGCTTACAAA-CTACTCAA
1 GCAATGCCTA-AAACCTACTCAA
* *
22736309 GCAATTCCTAAAACCTAGTCAA
1 GCAATGCCTAAAACCTACTCAA
22736331 GCAAT
1 GCAAT
22736336 ACACAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.41, C:0.27, G:0.10, T:0.22
Consensus pattern (22 bp):
GCAATGCCTAAAACCTACTCAA
Found at i:22738648 original size:7 final size:7
Alignment explanation
Indices: 22738636--22738661 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22738626 ACCATAAATC
22738636 ACTAATT
1 ACTAATT
22738643 ACTAATT
1 ACTAATT
22738650 ACTAATT
1 ACTAATT
22738657 ACTAA
1 ACTAA
22738662 CCAAATCACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (7 bp):
ACTAATT
Found at i:22738688 original size:20 final size:20
Alignment explanation
Indices: 22738663--22738725 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
22738653 AATTACTAAC
22738663 CAAATCACTTGAAATAAAAT
1 CAAATCACTTGAAATAAAAT
* * *
22738683 CAAATCAC-T-AATTACTAAC
1 CAAATCACTTGAAATA-AAAT
*
22738702 CAAACCACTTGAAATAAAAT
1 CAAATCACTTGAAATAAAAT
22738722 CAAA
1 CAAA
22738726 ATCATCCTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 4 0.12
19 10 0.30
20 15 0.45
21 4 0.12
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.22
Consensus pattern (20 bp):
CAAATCACTTGAAATAAAAT
Found at i:22738704 original size:39 final size:39
Alignment explanation
Indices: 22738650--22738725 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
22738640 ATTACTAATT
*
22738650 ACTAATTACTAACCAAATCACTTGAAATAAAATCAAATC
1 ACTAATTACTAACCAAACCACTTGAAATAAAATCAAATC
22738689 ACTAATTACTAACCAAACCACTTGAAATAAAATCAAA
1 ACTAATTACTAACCAAACCACTTGAAATAAAATCAAA
22738726 ATCATCCTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.53, C:0.21, G:0.03, T:0.24
Consensus pattern (39 bp):
ACTAATTACTAACCAAACCACTTGAAATAAAATCAAATC
Found at i:22742446 original size:39 final size:39
Alignment explanation
Indices: 22742358--22742495 Score: 165
Period size: 39 Copynumber: 3.6 Consensus size: 39
22742348 TTAACTCAGC
* * *
22742358 TCATGTGCACTCCCACATCGCACATAGC-TA-AT-ATCC
1 TCATGTGCACTCCCACACCGCACATGGCATATATCATCA
*
22742394 TCATGTGCACTCCCATACCGCACATGGCATATATCATCA
1 TCATGTGCACTCCCACACCGCACATGGCATATATCATCA
* **
22742433 TCATGTGCTCTCCCACACCGCACATGGCATATATCATTG
1 TCATGTGCACTCCCACACCGCACATGGCATATATCATCA
* * *
22742472 GCATGTGCTCTCCCACATCGCACA
1 TCATGTGCACTCCCACACCGCACA
22742496 CTACCGGTAC
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
36 25 0.28
37 2 0.02
38 2 0.02
39 60 0.67
ACGTcount: A:0.25, C:0.36, G:0.14, T:0.25
Consensus pattern (39 bp):
TCATGTGCACTCCCACACCGCACATGGCATATATCATCA
Found at i:22743660 original size:13 final size:13
Alignment explanation
Indices: 22743644--22743683 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
22743634 TTTCTCTTCA
22743644 TCTTTCCTTTCTT
1 TCTTTCCTTTCTT
22743657 TCTTTCCTTTC-T
1 TCTTTCCTTTCTT
*
22743669 TCTTT-CTTGCTT
1 TCTTTCCTTTCTT
22743681 TCT
1 TCT
22743684 CTTTCCTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 4 0.16
12 10 0.40
13 11 0.44
ACGTcount: A:0.00, C:0.30, G:0.03, T:0.68
Consensus pattern (13 bp):
TCTTTCCTTTCTT
Found at i:22743675 original size:20 final size:21
Alignment explanation
Indices: 22743650--22743688 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22743640 TTCATCTTTC
*
22743650 CTTTCTTTCTTTC-CTTTCTT
1 CTTTCTTGCTTTCTCTTTCTT
22743670 CTTTCTTGCTTTCTCTTTC
1 CTTTCTTGCTTTCTCTTTC
22743689 CTAGGGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.67
Consensus pattern (21 bp):
CTTTCTTGCTTTCTCTTTCTT
Found at i:22745685 original size:21 final size:22
Alignment explanation
Indices: 22745657--22745704 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
22745647 AAGGCAAGCA
22745657 TAGC-AGAA-CAAATCTCGCTG
1 TAGCGAGAATCAAATCTCGCTG
* * *
22745677 TAGCGAGAATGAATTTTCGCTG
1 TAGCGAGAATCAAATCTCGCTG
22745699 TAGCGA
1 TAGCGA
22745705 ACTTCAGGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 4 0.17
21 4 0.17
22 15 0.65
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (22 bp):
TAGCGAGAATCAAATCTCGCTG
Found at i:22745810 original size:74 final size:73
Alignment explanation
Indices: 22745726--22745931 Score: 236
Period size: 74 Copynumber: 2.8 Consensus size: 73
22745716 AATTTTTGAA
* *
22745726 CCAACAACCCGAGAGTTTCTTGCTACAAAGAGAATGCATTTTTGCTGCAGCAAAAATCCAGGTAG
1 CCAACCACCCGAGAGTTTCTTGCTACAAA-AGAATGCATTTTTGCTGCAGCAAAAATCCAGGCAG
* *
22745791 GCATTTTAC
65 GCAATTAAC
* ** ** *
22745800 CCAACCACCCGAGAGTTTCTTGCTATAACAAGAATGCATTTTCACTATAGCAAAAATCTAGGCAG
1 CCAACCACCCGAGAGTTTCTTGCTACAA-AAGAATGCATTTTTGCTGCAGCAAAAATCCAGGCAG
22745865 GCAATTAAC
65 GCAATTAAC
***
22745874 CCAACCACCCGAGAGTTTCTCATTGC--CGTTAGAATGCATTTTTGCTGCAGCAAAAATC
1 CCAACCACCCGAGAG-TT-TC-TTGCTACAAAAGAATGCATTTTTGCTGCAGCAAAAATC
22745932 TGGCCTAGAC
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
74 101 0.92
75 3 0.03
76 2 0.02
77 4 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (73 bp):
CCAACCACCCGAGAGTTTCTTGCTACAAAAGAATGCATTTTTGCTGCAGCAAAAATCCAGGCAGG
CAATTAAC
Found at i:22745999 original size:73 final size:73
Alignment explanation
Indices: 22745726--22746001 Score: 220
Period size: 74 Copynumber: 3.8 Consensus size: 73
22745716 AATTTTTGAA
* * ** ** * * *
22745726 CCAACAACCCGAGAGTTTCTTGCTACAAAGAGAATGCATTTTTGCTGCAGCAAAAATCCAGGTAG
1 CCAACCACCCGAGAGTTTCTTGCTATAGCGAGAATGCATTTTCACTGTAGCAAAAATCTAGGCAG
* * *
22745791 GCATTTTAC
66 ACA-ATAAC
* * *
22745800 CCAACCACCCGAGAGTTTCTTGCTATAACAAGAATGCATTTTCACTATAGCAAAAATCTAGGCAG
1 CCAACCACCCGAGAGTTTCTTGCTATAGCGAGAATGCATTTTCACTGTAGCAAAAATCTAGGCAG
*
22745865 GCAATTAAC
66 ACAA-TAAC
* ** *
22745874 CCAACCACCCGAGAGTTTC-T-C-ATTGCCGTTAGAATGCATTTTTGCTGCAGCAAAAATCT-GG
1 CCAACCACCCGAGAGTTTCTTGCTATAG-CG--AGAATGCATTTTCACTGTAGCAAAAATCTAGG
**
22745935 CCTAGACAA-GGC
63 -C-AGACAATAAC
* * * *
22745947 CCCAGCACCCAAGAGTTTCTTGCTATAGCGAGAATGCATTTTCCCTGTAGCAAAA
1 CCAACCACCCGAGAGTTTCTTGCTATAGCGAGAATGCATTTTCACTGTAGCAAAA
22746002 TTCAGGGCAA
Statistics
Matches: 164, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
71 2 0.01
72 2 0.01
73 42 0.26
74 107 0.65
75 8 0.05
76 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (73 bp):
CCAACCACCCGAGAGTTTCTTGCTATAGCGAGAATGCATTTTCACTGTAGCAAAAATCTAGGCAG
ACAATAAC
Found at i:22746815 original size:2 final size:2
Alignment explanation
Indices: 22746808--22746836 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22746798 TTATGGAAAG
22746808 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
22746837 AAAATGTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:22750921 original size:21 final size:22
Alignment explanation
Indices: 22750896--22750936 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
22750886 CCTAGGTGGA
*
22750896 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
*
22750917 AAAATTGAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
22750937 AAAAAGGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.51, C:0.05, G:0.27, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:22750941 original size:21 final size:20
Alignment explanation
Indices: 22750894--22750941 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
22750884 ACCCTAGGTG
*
22750894 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
* *
22750914 GTGAAAATTGAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
22750936 GAAAAA
1 GAAAAA
22750942 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.05
21 16 0.73
22 5 0.23
ACGTcount: A:0.56, C:0.04, G:0.25, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:22754672 original size:39 final size:39
Alignment explanation
Indices: 22754581--22754751 Score: 195
Period size: 39 Copynumber: 4.5 Consensus size: 39
22754571 TCAACTCAAC
* ** * *
22754581 TCATGTGCACTCCCACACCACACATAGC-TA-AT-ATCC
1 TCATGTGCTCTCCCACACCGGACATGGCATATATCATCA
* ** * *
22754617 TCATGTGCACTCCCACACCTCACAAGGCATATATGATCA
1 TCATGTGCTCTCCCACACCGGACATGGCATATATCATCA
* *
22754656 GCATGTGCTCTCCCACACCGGACATGGCATATATCTTCA
1 TCATGTGCTCTCCCACACCGGACATGGCATATATCATCA
* *
22754695 TCATGTACTCTCCCACACCGGACATGACATATATCATCA
1 TCATGTGCTCTCCCACACCGGACATGGCATATATCATCA
22754734 TCATGTGCTCTCCCACAC
1 TCATGTGCTCTCCCACAC
22754752 TGCACACTAC
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
36 25 0.22
37 2 0.02
38 2 0.02
39 87 0.75
ACGTcount: A:0.27, C:0.36, G:0.12, T:0.25
Consensus pattern (39 bp):
TCATGTGCTCTCCCACACCGGACATGGCATATATCATCA
Found at i:22764925 original size:46 final size:43
Alignment explanation
Indices: 22764788--22764923 Score: 141
Period size: 43 Copynumber: 3.2 Consensus size: 43
22764778 TTGTGTGATA
** * * * *
22764788 ATGATGACCCAGCTATGTGTGATGT-GGGAGTGCACATGAGCTG
1 ATGATGACCTGGCTATGTGCGA-GTAAGGAGTGCGCATAAGCTG
*
22764831 ATGATGA-CTCGGCTATGTGCGAGTAAGGAGTGCGCATAAGCCG
1 ATGATGACCT-GGCTATGTGCGAGTAAGGAGTGCGCATAAGCTG
* * * *
22764874 ATGATGACCTGGCTATGTGCTAGTAGGGAGTGTGTATAAGCTG
1 ATGATGACCTGGCTATGTGCGAGTAAGGAGTGCGCATAAGCTG
22764917 ATGATGA
1 ATGATGA
22764924 TGAGCCGGCT
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
42 3 0.04
43 73 0.94
44 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.26
Consensus pattern (43 bp):
ATGATGACCTGGCTATGTGCGAGTAAGGAGTGCGCATAAGCTG
Found at i:22768514 original size:4 final size:4
Alignment explanation
Indices: 22768499--22768550 Score: 54
Period size: 4 Copynumber: 13.2 Consensus size: 4
22768489 GGAAGAAAGG
* * *
22768499 AGAA AGGAA AGAA AGAA AG-G AGAA A-AA AGAA AAAA AGAG AGAA AGAA
1 AGAA A-GAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA
22768546 AGAA A
1 AGAA A
22768551 AAGCTTGGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
3 5 0.13
4 30 0.77
5 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:22768516 original size:20 final size:19
Alignment explanation
Indices: 22768491--22768550 Score: 86
Period size: 20 Copynumber: 3.1 Consensus size: 19
22768481 GATCAGTTGG
22768491 AAGAAAGGAGAAAGGAAAGA
1 AAGAAAGGAGAAA-GAAAGA
22768511 AAGAAAGGAGAAA-AAAGA
1 AAGAAAGGAGAAAGAAAGA
*
22768529 AAAAAAGAGAGAAAGAAAGA
1 AAGAAAG-GAGAAAGAAAGA
22768549 AA
1 AA
22768551 AAGCTTGGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
18 11 0.30
19 6 0.16
20 20 0.54
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
AAGAAAGGAGAAAGAAAGA
Found at i:22770561 original size:30 final size:30
Alignment explanation
Indices: 22770506--22770562 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22770496 TTAGATAAGA
*
22770506 AAATATGTTTATCTTAATTTAAGACAAAAT
1 AAATATGTTTATCTTAATCTAAGACAAAAT
*
22770536 AAATATTTTTAGTCTTAATCT-AGACAA
1 AAATATGTTTA-TCTTAATCTAAGACAA
22770563 GAAAACATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (30 bp):
AAATATGTTTATCTTAATCTAAGACAAAAT
Found at i:22770584 original size:59 final size:58
Alignment explanation
Indices: 22770450--22770609 Score: 173
Period size: 59 Copynumber: 2.8 Consensus size: 58
22770440 TGGCAGCTTT
* * * * *
22770450 AACATGTTTGTCTTAATTT-AGACAAGA-AAACATGTTTGGCCTTAATTTAGATAAGAA
1 AACATGTTTGTCTTAATTTAAGACAAGATAAATAT-TTTTGTCTTAATCTAGACAAGAA
* * *
22770507 AATATGTTTATCTTAATTTAAGACAAAATAAATATTTTTAGTCTTAATCTAGACAAGAA
1 AACATGTTTGTCTTAATTTAAGACAAGATAAATATTTTT-GTCTTAATCTAGACAAGAA
* * *
22770566 AACATATTTGTCTCAATTTAA-ACAAGGTAAAATATTTTTGTCTT
1 AACATGTTTGTCTTAATTTAAGACAAGAT-AAATATTTTTGTCTT
22770610 TTTTAAAGAC
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
57 17 0.20
58 20 0.24
59 48 0.56
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (58 bp):
AACATGTTTGTCTTAATTTAAGACAAGATAAATATTTTTGTCTTAATCTAGACAAGAA
Found at i:22770590 original size:28 final size:28
Alignment explanation
Indices: 22770450--22770609 Score: 149
Period size: 29 Copynumber: 5.5 Consensus size: 28
22770440 TGGCAGCTTT
22770450 AACATGTTTGTCTTAATTTAGACAAGAA
1 AACATGTTTGTCTTAATTTAGACAAGAA
* *
22770478 AACATGTTTGGCCTTAATTTAGATAAGAA
1 AACATGTTT-GTCTTAATTTAGACAAGAA
* * *
22770507 AATATGTTTATCTTAATTTAAGACAAAATA
1 AACATGTTTGTCTTAATTT-AGACAAGA-A
* * *
22770537 AATATTTTTAGTCTTAATCTAGACAAGAA
1 AACATGTTT-GTCTTAATTTAGACAAGAA
* * *
22770566 AACATATTTGTCTCAATTTAAACAAGGTAA
1 AACATGTTTGTCTTAATTTAGACAA-G-AA
* *
22770596 AATATTTTTGTCTT
1 AACATGTTTGTCTT
22770610 TTTTAAAGAC
Statistics
Matches: 107, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
28 30 0.28
29 40 0.37
30 29 0.27
31 8 0.07
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (28 bp):
AACATGTTTGTCTTAATTTAGACAAGAA
Done.