Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 77 of 93
Found at i:29545898 original size:43 final size:43
Alignment explanation
Indices: 29545850--29545968 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 43
29545840 TCACCAGCTC
** * **
29545850 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATC-CTCGACTT
29545893 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGACTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGACTT
* *
29545936 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
29545969 ATATAATTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 67 0.99
ACGTcount: A:0.20, C:0.38, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGACTT
Found at i:29550122 original size:3 final size:3
Alignment explanation
Indices: 29550114--29550157 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
29550104 TATAAAGCTA
29550114 TAT TAT TAT TAT TAT T-T TAT TAT T-T T-T TAAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
29550157 T
1 T
29550158 TAAAAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.16
3 30 0.79
4 2 0.05
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:29550135 original size:14 final size:14
Alignment explanation
Indices: 29550116--29550158 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
29550106 TAAAGCTATA
29550116 TTATTATTATTATT
1 TTATTATTATTATT
29550130 TTATTATT-TT-TT
1 TTATTATTATTATT
29550142 AATTATTATTATTATT
1 --TTATTATTATTATT
29550158 T
1 T
29550159 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 2 0.08
13 2 0.08
14 17 0.68
15 2 0.08
16 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TTATTATTATTATT
Found at i:29550159 original size:17 final size:17
Alignment explanation
Indices: 29550114--29550160 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
29550104 TATAAAGCTA
29550114 TATTATTATTA-TT-AT
1 TATTATTATTATTTAAT
*
29550129 T-TTATTATTTTTTAAT
1 TATTATTATTATTTAAT
29550145 TATTATTATTATTTAA
1 TATTATTATTATTTAA
29550161 AAAAAAACTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 8 0.30
15 3 0.11
16 3 0.11
17 13 0.48
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTATTATTATTTAAT
Found at i:29551544 original size:9 final size:9
Alignment explanation
Indices: 29551520--29551565 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
29551510 ATCATCATTA
29551520 TTTTTTTAT
1 TTTTTTTAT
29551529 TTATTTTT-T
1 TT-TTTTTAT
29551538 TATTTTTTAT
1 T-TTTTTTAT
*
29551548 TATTTTTAT
1 TTTTTTTAT
29551557 TTTTTTTAT
1 TTTTTTTAT
29551566 AATAGATGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 24 0.75
10 8 0.25
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:29551550 original size:18 final size:18
Alignment explanation
Indices: 29551520--29551565 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 18
29551510 ATCATCATTA
29551520 TTTTTTTATTTATTTTT-T
1 TTTTTTTA-TTATTTTTAT
29551538 TATTTTTTATTATTTTTAT
1 T-TTTTTTATTATTTTTAT
29551557 TTTTTTTAT
1 TTTTTTTAT
29551566 AATAGATGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTTATTATTTTTAT
Found at i:29551565 original size:15 final size:15
Alignment explanation
Indices: 29551517--29551565 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
29551507 TTCATCATCA
*
29551517 TTATTTTT-TTATTTA
1 TTATTTTTATT-TTTT
29551532 TT-TTTTTATTTTTT
1 TTATTTTTATTTTTT
29551546 ATTATTTTTATTTTTT
1 -TTATTTTTATTTTTT
29551562 TTAT
1 TTAT
29551566 AATAGATGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 8 0.27
15 10 0.33
16 12 0.40
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTATTTTTATTTTTT
Found at i:29555513 original size:32 final size:34
Alignment explanation
Indices: 29555461--29555525 Score: 100
Period size: 32 Copynumber: 2.0 Consensus size: 34
29555451 TAAAAATTAC
29555461 TATTATATTGTATAATTTTTTTTATAAAAAAAAG
1 TATTATATTGTATAATTTTTTTTATAAAAAAAAG
29555495 NTATTATA-TGTAT-A-TTTTTTTATAAAAAAAA
1 -TATTATATTGTATAATTTTTTTTATAAAAAAAA
29555526 AAAGAAAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 17 0.57
33 1 0.03
34 5 0.17
35 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (34 bp):
TATTATATTGTATAATTTTTTTTATAAAAAAAAG
Found at i:29555529 original size:35 final size:34
Alignment explanation
Indices: 29555461--29555527 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
29555451 TAAAAATTAC
*
29555461 TATTATATTGTATAATTTTTTTTATAAAAAAAAG
1 TATTATATTGTATAATTTTTTTTAAAAAAAAAAG
29555495 NTATTATA-TGTAT-ATTTTTTTATAAAAAAAAAA
1 -TATTATATTGTATAATTTTTTT-TAAAAAAAAAA
29555528 AGAAAGCATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 8 0.27
34 15 0.50
35 7 0.23
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.48
Consensus pattern (34 bp):
TATTATATTGTATAATTTTTTTTAAAAAAAAAAG
Found at i:29556780 original size:3 final size:3
Alignment explanation
Indices: 29556772--29556797 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
29556762 AGTAGCTGAT
29556772 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
29556798 GTCAAGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:29560645 original size:3 final size:3
Alignment explanation
Indices: 29560639--29560663 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
29560629 TAGTTTTTTT
29560639 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
29560664 CGTGAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:29561804 original size:17 final size:17
Alignment explanation
Indices: 29561784--29561818 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
29561774 GTATAATCAA
29561784 GTGTGCAGTATCAACAT
1 GTGTGCAGTATCAACAT
**
29561801 GTGTGCTTTATCAACAT
1 GTGTGCAGTATCAACAT
29561818 G
1 G
29561819 CTCTACTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (17 bp):
GTGTGCAGTATCAACAT
Found at i:29571145 original size:24 final size:24
Alignment explanation
Indices: 29571116--29571191 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
29571106 TGTGACACAG
* *
29571116 TTGTGACATGGCAAGGTTTAGAGT
1 TTGTGACACGGCAAGGTTCAGAGT
* * ** *
29571140 TTGTGACACGCCATGG-AGAGAAT
1 TTGTGACACGGCAAGGTTCAGAGT
*
29571163 TTGTGACACGGTAAGGTTCAGAGT
1 TTGTGACACGGCAAGGTTCAGAGT
29571187 TTGTG
1 TTGTG
29571192 TCACACCATG
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
23 17 0.44
24 22 0.56
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (24 bp):
TTGTGACACGGCAAGGTTCAGAGT
Found at i:29571169 original size:23 final size:23
Alignment explanation
Indices: 29571139--29571361 Score: 101
Period size: 23 Copynumber: 9.6 Consensus size: 23
29571129 AGGTTTAGAG
29571139 TTTGTGACACGCCATGGAGAGAA
1 TTTGTGACACGCCATGGAGAGAA
** * ** *
29571162 TTTGTGACACGGTAAGGTTCAGAG
1 TTTGTGACACGCCATGG-AGAGAA
* * *
29571186 TTTGTGTCACACCATGGAGGGAA
1 TTTGTGACACGCCATGGAGAGAA
* * ** ** *
29571209 TCTGTGATACGGTA-GCGTTCAGAG
1 TTTGTGACACGCCATG-G-AGAGAA
* *
29571233 TTTGTGACACGCAATGGAGGGAA
1 TTTGTGACACGCCATGGAGAGAA
* * * * *
29571256 TCTGTGACACGGCA-GCATCAGAG
1 TTTGTGACACGCCATGGA-GAGAA
*
29571279 TTTGTGACACGCCATGGAGGGAA
1 TTTGTGACACGCCATGGAGAGAA
* * * * *
29571302 TCTGTGACACGGCA-GCATCAGAG
1 TTTGTGACACGCCATGGA-GAGAA
* *
29571325 TTTGTGACACGCCAAGGAGGGAA
1 TTTGTGACACGCCATGGAGAGAA
29571348 TTTGTGACACGCCA
1 TTTGTGACACGCCA
29571362 ACATTCAGAG
Statistics
Matches: 134, Mismatches: 58, Indels: 16
0.64 0.28 0.08
Matches are distributed among these distances:
22 5 0.04
23 96 0.72
24 32 0.24
25 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (23 bp):
TTTGTGACACGCCATGGAGAGAA
Found at i:29571186 original size:47 final size:47
Alignment explanation
Indices: 29571117--29571470 Score: 389
Period size: 46 Copynumber: 7.7 Consensus size: 47
29571107 GTGACACAGT
* * * *
29571117 TGTGACATGGCAAGGTTTAGAGTTTGTGACACGCCATGGAGAGAATT
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
* * *
29571164 TGTGACACGGTAAGGTTCAGAGTTTGTGTCACACCATGGAGGGAATC
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
* * *
29571211 TGTGATACGG-TAGCGTTCAGAGTTTGTGACACGCAATGGAGGGAATC
1 TGTGACACGGCAAG-GTTCAGAGTTTGTGACACGCCATGGAGGGAATC
**
29571258 TGTGACACGGC-AGCATCAGAGTTTGTGACACGCCATGGAGGGAATC
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
** * *
29571304 TGTGACACGGC-AGCATCAGAGTTTGTGACACGCCAAGGAGGGAATT
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
* ** *
29571350 TGTGACACGCCAACATTCAGAGTTTGTGACATGCCAT-GAGGGAATC
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
* * * * * *
29571396 TGTGACACAGCAGGGTTCAAAGTTTGTTAGACTCCATGGA--G-ATC
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
* * *
29571440 TGTGACACGGCAGGGTTTAGAGTGTGTGACA
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACA
29571471 TGGCATGGCT
Statistics
Matches: 262, Mismatches: 41, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
44 28 0.11
45 1 0.00
46 121 0.46
47 112 0.43
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.24
Consensus pattern (47 bp):
TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAGGGAATC
Found at i:29571380 original size:24 final size:23
Alignment explanation
Indices: 29571258--29571385 Score: 80
Period size: 23 Copynumber: 5.5 Consensus size: 23
29571248 GGAGGGAATC
* *
29571258 TGTGACACGGCAGCATCAGAGTT
1 TGTGACACGCCAACATCAGAGTT
** ** * *
29571281 TGTGACACGCCATGGA-GGGAATC
1 TGTGACACGCCA-ACATCAGAGTT
* *
29571304 TGTGACACGGCAGCATCAGAGTT
1 TGTGACACGCCAACATCAGAGTT
* ** *
29571327 TGTGACACGCCAAGGA-GGGAATT
1 TGTGACACGCCAA-CATCAGAGTT
29571350 TGTGACACGCCAACATTCAGAGTT
1 TGTGACACGCCAACA-TCAGAGTT
*
29571374 TGTGACATGCCA
1 TGTGACACGCCA
29571386 TGAGGGAATC
Statistics
Matches: 77, Mismatches: 23, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
22 3 0.04
23 56 0.73
24 18 0.23
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (23 bp):
TGTGACACGCCAACATCAGAGTT
Found at i:29572135 original size:31 final size:31
Alignment explanation
Indices: 29572095--29572169 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
29572085 AGTGATTGGA
*
29572095 GTGTAACAACATTTGACT-TGATACGCATGGT-
1 GTGTTACAACATTTGA-TGTGATACGCAT-GTC
* * *
29572126 GTGTTACAACATTTTATGTTATATGCATGTC
1 GTGTTACAACATTTGATGTGATACGCATGTC
29572157 GTGTTACAACATT
1 GTGTTACAACATT
29572170 ATGAGTTAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 3 0.08
31 35 0.92
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (31 bp):
GTGTTACAACATTTGATGTGATACGCATGTC
Found at i:29573913 original size:145 final size:144
Alignment explanation
Indices: 29573577--29573893 Score: 440
Period size: 145 Copynumber: 2.2 Consensus size: 144
29573567 GTAAGGATGG
* *
29573577 TTCTAACGGTTTGTGTTCAACAATTT-CATATGTGATTATCGAATAACATATCTGTGTTTATAGT
1 TTCTAACGGTTTGTGTTCAAC-ATTTCCATATGTGATTATCGAATAACATATCTGTATTTACAGT
* * *
29573641 TGGACCATGCGACACAACTTCATAACCACCGAGAGGTCCTTCTCAGACTCATAGTGCTAACGACC
65 TGGACCATGCGACACAACTTCATAACCACCAAGAGGTCCTCCTCAGACGCATAGTGCTAACGACC
*
29573706 CGTCGATAAGATCGG
130 CGTCGATAAGATCGA
* * * *
29573721 TTATAACAGTTTGTGTTCAACAATTCCATATGTGATTATCGAATAACATATCTGTATTTGCAGTT
1 TTCTAACGGTTTGTGTTCAACATTTCCATATGTGATTATCGAATAACATATCTGTATTTACAGTT
* * *
29573786 GGACCATGTGACAACAGC-TCCTCAACCACCAAGAGGTCCTCCTCAGACGCATAGTGCTAACGAC
66 GGACCATGCGAC-ACAACTTCAT-AACCACCAAGAGGTCCTCCTCAGACGCATAGTGCTAACGAC
* * *
29573850 TCGTTGGTAAGATCGA
129 CCGTCGATAAGATCGA
*
29573866 TTCTAACGGTTTCTGTTCAACATTTCCA
1 TTCTAACGGTTTGTGTTCAACATTTCCA
29573894 CATATGTTTA
Statistics
Matches: 150, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
143 3 0.02
144 69 0.46
145 78 0.52
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (144 bp):
TTCTAACGGTTTGTGTTCAACATTTCCATATGTGATTATCGAATAACATATCTGTATTTACAGTT
GGACCATGCGACACAACTTCATAACCACCAAGAGGTCCTCCTCAGACGCATAGTGCTAACGACCC
GTCGATAAGATCGA
Found at i:29576135 original size:31 final size:31
Alignment explanation
Indices: 29576037--29576198 Score: 112
Period size: 31 Copynumber: 5.2 Consensus size: 31
29576027 GGGGCATGGG
** * *
29576037 GTGTCACCCCTGAATACTGCAACAAGTTAGC
1 GTGTCACCCCACAATACTGCAACCAGTCAGC
* ** ** * *
29576068 GTGTCACGCCA-TGTATCTGCTTCCACTCGGC
1 GTGTCACCCCACAATA-CTGCAACCAGTCAGC
* * *
29576099 ATGTCACCCCACAATACTGCAACAAGTCAAC
1 GTGTCACCCCACAATACTGCAACCAGTCAGC
** * ** *
29576130 GTGTCATGCCAC-GTATCTGCTTCCACTCAGC
1 GTGTCACCCCACAATA-CTGCAACCAGTCAGC
29576161 GTGTCACCCCACAATACTGCAACCAGTCAGC
1 GTGTCACCCCACAATACTGCAACCAGTCAGC
29576192 GTGTCAC
1 GTGTCAC
29576199 GCTATAAATC
Statistics
Matches: 92, Mismatches: 35, Indels: 8
0.68 0.26 0.06
Matches are distributed among these distances:
30 4 0.04
31 84 0.91
32 4 0.04
ACGTcount: A:0.25, C:0.35, G:0.18, T:0.23
Consensus pattern (31 bp):
GTGTCACCCCACAATACTGCAACCAGTCAGC
Found at i:29576227 original size:62 final size:62
Alignment explanation
Indices: 29576037--29576230 Score: 253
Period size: 62 Copynumber: 3.1 Consensus size: 62
29576027 GGGGCATGGG
** * *
29576037 GTGTCACCCCTGAATACTGCAACAAGTTAGCGTGTCACGCCATGTATCTGCTTCCACTCGGC
1 GTGTCACCCCACAATACTGCAACAAGTCAGCGTGTCACGCCATGTATCTGCTTCCACTCAGC
* * * *
29576099 ATGTCACCCCACAATACTGCAACAAGTCAACGTGTCATGCCACGTATCTGCTTCCACTCAGC
1 GTGTCACCCCACAATACTGCAACAAGTCAGCGTGTCACGCCATGTATCTGCTTCCACTCAGC
* * ** * **
29576161 GTGTCACCCCACAATACTGCAACCAGTCAGCGTGTCACGCTATAAATCTGTTTCCACTCAAT
1 GTGTCACCCCACAATACTGCAACAAGTCAGCGTGTCACGCCATGTATCTGCTTCCACTCAGC
29576223 GTGTCACC
1 GTGTCACC
29576231 ACAAGATGTC
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 113 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (62 bp):
GTGTCACCCCACAATACTGCAACAAGTCAGCGTGTCACGCCATGTATCTGCTTCCACTCAGC
Found at i:29576546 original size:22 final size:23
Alignment explanation
Indices: 29576512--29576561 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
29576502 ATTTTATATT
29576512 ATTTTTGTAAAAATGATAATTTA
1 ATTTTTGTAAAAATGATAATTTA
29576535 ATTTTTGTAAAAATGATAATTTA
1 ATTTTTGTAAAAATGATAATTTA
29576558 ATTT
1 ATTT
29576562 ATTAATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (23 bp):
ATTTTTGTAAAAATGATAATTTA
Found at i:29582903 original size:31 final size:31
Alignment explanation
Indices: 29582859--29582933 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 31
29582849 TTTGTCACTC
*
29582859 ATGTTGTTGCACGCCATGCATAT-AACGTAAA
1 ATGTTGTTACACGCCATGCATATCAA-GTAAA
* *
29582890 ATGTTGTAACACGCCATGCATATCAAGTCAA
1 ATGTTGTTACACGCCATGCATATCAAGTAAA
29582921 ATGTTGTTACACG
1 ATGTTGTTACACG
29582934 TCAACCCTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (31 bp):
ATGTTGTTACACGCCATGCATATCAAGTAAA
Found at i:29587426 original size:24 final size:24
Alignment explanation
Indices: 29587380--29587426 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
29587370 ATCAAGCTAC
* *
29587380 CATGTGTCAAACAATTAGGCTATA
1 CATGTGTCAAACAATAAGCCTATA
*
29587404 CATGTGTCAACCAATAAGCCTAT
1 CATGTGTCAAACAATAAGCCTAT
29587427 TTGGGGACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (24 bp):
CATGTGTCAAACAATAAGCCTATA
Found at i:29588413 original size:12 final size:12
Alignment explanation
Indices: 29588395--29588425 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
29588385 AATAGAACCA
29588395 AAATTAAAAAAT
1 AAATTAAAAAAT
*
29588407 TAATTAAAAAAT
1 AAATTAAAAAAT
29588419 AAATTAA
1 AAATTAA
29588426 GACATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAATTAAAAAAT
Found at i:29588777 original size:14 final size:13
Alignment explanation
Indices: 29588759--29588821 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
29588749 AATATGTAAT
29588759 TTTTAATTTAAAA
1 TTTTAATTTAAAA
29588772 TATTT-A-TTATAAA
1 T-TTTAATTTA-AAA
*
29588785 TTTTTATTTAAAA
1 TTTTAATTTAAAA
* *
29588798 TTTTAATATAATA
1 TTTTAATTTAAAA
*
29588811 TTTTATTTTAA
1 TTTTAATTTAA
29588822 TTTTTAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
12 6 0.15
13 29 0.71
14 6 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTTAATTTAAAA
Found at i:29588790 original size:13 final size:12
Alignment explanation
Indices: 29588756--29588827 Score: 56
Period size: 13 Copynumber: 5.7 Consensus size: 12
29588746 TATAATATGT
29588756 AATTTTTAATTTAA
1 AATTTTT-ATTT-A
*
29588770 AATATTTATTATA
1 AATTTTTATT-TA
29588783 AATTTTTATTTA
1 AATTTTTATTTA
* *
29588795 AAATTTTA-ATA
1 AATTTTTATTTA
*
29588806 TAATATTTTATTTT
1 -AAT-TTTTATTTA
29588820 AATTTTTA
1 AATTTTTA
29588828 GAATATTAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 2 0.04
12 16 0.34
13 21 0.45
14 8 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
AATTTTTATTTA
Found at i:29588808 original size:25 final size:24
Alignment explanation
Indices: 29588755--29588827 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 24
29588745 TTATAATATG
*
29588755 TAATTTTTAATTTAAAATATTTATTA
1 TAATTTTT-ATTTAAAAT-TTTAATA
29588781 TAAATTTTTATTTAAAATTTTAATA
1 T-AATTTTTATTTAAAATTTTAATA
* *
29588806 TAATATTTTATTTTAATTTTTA
1 TAAT-TTTTATTTAAAATTTTA
29588828 GAATATTAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 3 0.07
25 22 0.52
26 10 0.24
27 7 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TAATTTTTATTTAAAATTTTAATA
Found at i:29589115 original size:18 final size:19
Alignment explanation
Indices: 29589073--29589115 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
29589063 TAATTAAATT
*
29589073 ATTATTTTTTAAAATGTTAT
1 ATTATTTTTTAAAA-GTTAA
*
29589093 GTTATTTTTTAAAA-TTAA
1 ATTATTTTTTAAAAGTTAA
29589111 ATTAT
1 ATTAT
29589116 CTTGTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.35
20 13 0.65
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
ATTATTTTTTAAAAGTTAA
Found at i:29589472 original size:39 final size:37
Alignment explanation
Indices: 29589428--29589547 Score: 113
Period size: 39 Copynumber: 3.2 Consensus size: 37
29589418 AAGTTTGATG
*
29589428 AATATTAATATTTAATTTAAAATATTAAAAAATTTAAA
1 AATATTAATATTTAATTTTAAATATT-AAAAATTTAAA
* *
29589466 ATATATTAATATTTATTTTTAAAT-TT--TAATTT-AA
1 A-ATATTAATATTTAATTTTAAATATTAAAAATTTAAA
*
29589500 AATATTAATATTTAAATTATTAAATAATATTAAAATTTAAAA
1 AATATTAATATTT-AATT-TTAAAT-AT-TAAAAATTT-AAA
29589542 AATATT
1 AATATT
29589548 TTTTAATGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
33 12 0.18
34 6 0.09
35 11 0.16
37 1 0.01
38 4 0.06
39 20 0.30
40 5 0.07
42 8 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (37 bp):
AATATTAATATTTAATTTTAAATATTAAAAATTTAAA
Found at i:29589523 original size:35 final size:35
Alignment explanation
Indices: 29589458--29589524 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
29589448 AATATTAAAA
*
29589458 AATTTAAAATATATTAATATTTATTTTTAAATTTT
1 AATTTAAAATATATTAATATTTATTATTAAATTTT
29589493 AATTT-AAA-ATATTAATATTTAAATTATTAAAT
1 AATTTAAAATATATTAATATTT--ATTATTAAAT
29589525 AATATTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 12 0.41
34 3 0.10
35 14 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (35 bp):
AATTTAAAATATATTAATATTTATTATTAAATTTT
Found at i:29589529 original size:19 final size:18
Alignment explanation
Indices: 29589505--29589548 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
29589495 TTTAAAATAT
*
29589505 TAATATTTAAATTATTAAA
1 TAATATTTAAAAT-TTAAA
29589524 TAATA-TTAAAATTTAAA
1 TAATATTTAAAATTTAAA
*
29589541 AAATATTT
1 TAATATTT
29589549 TTTAATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 9 0.41
18 8 0.36
19 5 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATATTTAAAATTTAAA
Found at i:29589539 original size:52 final size:51
Alignment explanation
Indices: 29589438--29589540 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 51
29589428 AATATTAATA
* * **
29589438 TTTAATTTAAAATATTAAAAAATTTAAAATATATTAATATTTATTTTTAAAT
1 TTTAATTTAAAATATT-AAAAATTTAAAATATAATAATATTAAAATTTAAAT
* *
29589490 TTTAATTTAAAATATT-AATATTTAAATTATTAAATAATATTAAAATTTAAA
1 TTTAATTTAAAATATTAAAAATTTAAAATA-T-AATAATATTAAAATTTAAA
29589541 AAATATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
50 11 0.26
51 1 0.02
52 31 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (51 bp):
TTTAATTTAAAATATTAAAAATTTAAAATATAATAATATTAAAATTTAAAT
Found at i:29592916 original size:29 final size:28
Alignment explanation
Indices: 29592874--29592946 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
29592864 AATCCTTAAT
* *
29592874 TAAGGCTTATTTGATC-CAAATAAAAGAA
1 TAAGGCTTAATTGAACGC-AATAAAAGAA
29592902 TAAGAGCTTAATTGAACGCAATAAAAGAA
1 TAAG-GCTTAATTGAACGCAATAAAAGAA
* *
29592931 TACGGGCTTATTTGAA
1 TA-AGGCTTAATTGAA
29592947 TATTCTTGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
28 4 0.11
29 32 0.84
30 2 0.05
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (28 bp):
TAAGGCTTAATTGAACGCAATAAAAGAA
Found at i:29596794 original size:27 final size:27
Alignment explanation
Indices: 29596756--29596813 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
29596746 ACCACTCAAC
* *
29596756 TCCTCTTCTCCTCCGCCTCCTTCCCCA
1 TCCTCTCCTCCTCCCCCTCCTTCCCCA
* *
29596783 TCCTCTCCTCCTCCCCCTTCTTCCCTA
1 TCCTCTCCTCCTCCCCCTCCTTCCCCA
29596810 TCCT
1 TCCT
29596814 TTCTCTTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.03, C:0.59, G:0.02, T:0.36
Consensus pattern (27 bp):
TCCTCTCCTCCTCCCCCTCCTTCCCCA
Found at i:29601591 original size:30 final size:30
Alignment explanation
Indices: 29601550--29601617 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 30
29601540 AATCATTAGT
* *
29601550 TATAAGAGCTTATTTGATTCAAAATAAAAG
1 TATAAGAGCTTAGTTGACTCAAAATAAAAG
*
29601580 TATAAGGGCTTAGTTGACTCAAAATAAAAG
1 TATAAGAGCTTAGTTGACTCAAAATAAAAG
29601610 TATGAAGA
1 TAT-AAGA
29601618 CTTGATTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 30 0.91
31 3 0.09
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (30 bp):
TATAAGAGCTTAGTTGACTCAAAATAAAAG
Found at i:29617362 original size:27 final size:26
Alignment explanation
Indices: 29617311--29617363 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
29617301 TTATTTTGAG
*
29617311 AAAAAAATTTGAATCAACTTTTTTAAC
1 AAAAAAATTT-AATCAACTTATTTAAC
29617338 AAAAAAATTT-ATCAACTATCATTTAA
1 AAAAAAATTTAATCAACT-T-ATTTAA
29617364 AAGCATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 7 0.30
26 1 0.04
27 15 0.65
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAAAAATTTAATCAACTTATTTAAC
Found at i:29626681 original size:4 final size:4
Alignment explanation
Indices: 29626672--29626733 Score: 57
Period size: 4 Copynumber: 17.2 Consensus size: 4
29626662 CGGCTAGGAG
*
29626672 AGAA AGAA AGAA AGAA AG-- AGAA AGAA AG-A AGAA AGAG A-AA AG-A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA
*
29626715 A-AA AGAA AGAG AG-A AGAA A
1 AGAA AGAA AGAA AGAA AGAA A
29626734 AGGGGAGCGG
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
2 2 0.04
3 11 0.23
4 34 0.72
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:29626705 original size:17 final size:17
Alignment explanation
Indices: 29626670--29626733 Score: 94
Period size: 17 Copynumber: 3.6 Consensus size: 17
29626660 AGCGGCTAGG
29626670 AGAGAAAGAAAGAAAGAA
1 AGAGAAAGAAAG-AAGAA
29626688 AGAGAAAGAAAGAAGAA
1 AGAGAAAGAAAGAAGAA
29626705 AGAGAAAAGAAA-AAGAA
1 AGAG-AAAGAAAGAAGAA
29626722 AGAGAGAAGAAA
1 AGAGA-AAGAAA
29626734 AGGGGAGCGG
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.02
17 24 0.55
18 19 0.43
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (17 bp):
AGAGAAAGAAAGAAGAA
Found at i:29626721 original size:28 final size:29
Alignment explanation
Indices: 29626672--29626733 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
29626662 CGGCTAGGAG
*
29626672 AGAAAGAAAGAAAGAAAGAGAAAGAAAGA
1 AGAAAGAAAGAAAGAAAAAGAAAGAAAGA
* *
29626701 AGAAAGAGA-AAAGAAAAAGAAAGAGAGA
1 AGAAAGAAAGAAAGAAAAAGAAAGAAAGA
29626729 AGAAA
1 AGAAA
29626734 AGGGGAGCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 22 0.73
29 8 0.27
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (29 bp):
AGAAAGAAAGAAAGAAAAAGAAAGAAAGA
Found at i:29637354 original size:2 final size:2
Alignment explanation
Indices: 29637347--29637371 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
29637337 TTATTTATTG
29637347 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
29637372 TTAGGTTGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29652598 original size:6 final size:6
Alignment explanation
Indices: 29652582--29652615 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
29652572 CGGTAAGCAT
*
29652582 TTTTTG ATTTTTT TTTTTG TTTTTG TTTTTG TTT
1 TTTTTG -TTTTTG TTTTTG TTTTTG TTTTTG TTT
29652616 CGTTGTTCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:29684220 original size:13 final size:13
Alignment explanation
Indices: 29684202--29684269 Score: 50
Period size: 13 Copynumber: 5.1 Consensus size: 13
29684192 TAAACATTAA
29684202 GAATTATGTTTGG
1 GAATTATGTTTGG
* *
29684215 GAATTAATATTT-A
1 GAATT-ATGTTTGG
29684228 GAATTATTGTTTGG
1 GAATTA-TGTTTGG
* *
29684242 GAATTAATATTT-A
1 GAATT-ATGTTTGG
29684255 GAATTATTGTTTGG
1 GAATTA-TGTTTGG
29684269 G
1 G
29684270 TTTTTAATTA
Statistics
Matches: 41, Mismatches: 8, Indels: 11
0.68 0.13 0.18
Matches are distributed among these distances:
12 2 0.05
13 23 0.56
14 15 0.37
15 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (13 bp):
GAATTATGTTTGG
Found at i:29684220 original size:27 final size:27
Alignment explanation
Indices: 29684188--29684353 Score: 112
Period size: 27 Copynumber: 6.0 Consensus size: 27
29684178 TTTGATGCTA
*
29684188 GAATTAAACATTAAGAATTATGTTTGG
1 GAATTAAACATTTAGAATTATGTTTGG
*
29684215 GAATT-AATATTTAGAATTATTGTTTGG
1 GAATTAAACATTTAGAATTA-TGTTTGG
*
29684242 GAATT-AATATTTAGAATTATTGTTTGG
1 GAATTAAACATTTAGAATTA-TGTTTGG
* *
29684269 GTTTTTAATTAAA-ATGATTGGTAA-TATG-TT-A
1 G-----AATTAAACAT--TTAG-AATTATGTTTGG
*
29684300 GAATTAAACATTAAGAATTATGTTTGG
1 GAATTAAACATTTAGAATTATGTTTGG
**
29684327 GAATT-AATGTTTAGAATTATTGTTTGG
1 GAATTAAACATTTAGAATTA-TGTTTGG
29684354 ATTTTTAATT
Statistics
Matches: 114, Mismatches: 10, Indels: 30
0.74 0.06 0.19
Matches are distributed among these distances:
24 2 0.02
25 6 0.05
26 32 0.28
27 54 0.47
31 1 0.01
32 8 0.07
33 4 0.04
34 5 0.04
35 2 0.02
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.45
Consensus pattern (27 bp):
GAATTAAACATTTAGAATTATGTTTGG
Found at i:29684327 original size:85 final size:85
Alignment explanation
Indices: 29684227--29684481 Score: 413
Period size: 85 Copynumber: 3.0 Consensus size: 85
29684217 ATTAATATTT
* *
29684227 AGAATTATTGTTTGGGAATTAATATTTAGAATTATTGTTTGGGTTTTTAATTAAAATGATTGGTA
1 AGAATTA-TGTTTGGGAATTAATGTTTAGAATTATTGTTTGGATTTTTAATTAAAATGATTGGTA
*
29684292 ATATGTTAGAATTAAACATTA
65 ATATGCTAGAATTAAACATTA
29684313 AGAATTATGTTTGGGAATTAATGTTTAGAATTATTGTTTGGATTTTTAATTAAAATGATTGGTAA
1 AGAATTATGTTTGGGAATTAATGTTTAGAATTATTGTTTGGATTTTTAATTAAAATGATTGGTAA
*
29684378 TATGCTAGAATTAAATATTA
66 TATGCTAGAATTAAACATTA
* * *
29684398 A-AAGTTATGTTTAGGAATTAATGTTTAGAATTATTATTTGGATTTTTAATTAAAATGATTGGCA
1 AGAA-TTATGTTTGGGAATTAATGTTTAGAATTATTGTTTGGATTTTTAATTAAAATGATTGGTA
*
29684462 ATATGCTAAAATTAAACATT
65 ATATGCTAGAATTAAACATT
29684482 GGAATTAATA
Statistics
Matches: 159, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
84 2 0.01
85 150 0.94
86 7 0.04
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.44
Consensus pattern (85 bp):
AGAATTATGTTTGGGAATTAATGTTTAGAATTATTGTTTGGATTTTTAATTAAAATGATTGGTAA
TATGCTAGAATTAAACATTA
Found at i:29684340 original size:112 final size:108
Alignment explanation
Indices: 29684137--29684353 Score: 335
Period size: 112 Copynumber: 2.0 Consensus size: 108
29684127 TTCAAAGACT
29684137 TTAACATTTAGAATTATTGTTTGGATAATTAATTAAAATGATTTGATGCTAGAATTAAACATTAA
1 TTAACATTTAGAATTATTGTTTGGATAATTAATTAAAATGATTTGATGCTAGAATTAAACATTAA
29684202 GAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAA
66 GAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAA
* * ** * *
29684245 TTAATATTTAGAATTATTGTTTGGGTTTTTAATTAAAATGATTGGTAATATGTTAGAATTAAACA
1 TTAACATTTAGAATTATTGTTTGGATAATTAATTAAAATGATT--T--GATGCTAGAATTAAACA
*
29684310 TTAAGAATTATGTTTGGGAATTAATGTTTAGAATTATTGTTTGG
62 TTAAGAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGG
29684354 ATTTTTAATT
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
108 39 0.40
110 1 0.01
112 58 0.59
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.45
Consensus pattern (108 bp):
TTAACATTTAGAATTATTGTTTGGATAATTAATTAAAATGATTTGATGCTAGAATTAAACATTAA
GAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAA
Found at i:29684418 original size:112 final size:112
Alignment explanation
Indices: 29684186--29684392 Score: 249
Period size: 112 Copynumber: 1.9 Consensus size: 112
29684176 GATTTGATGC
29684186 TAGAATTAAACATTAAGAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAATTAATA
1 TAGAATTAAACATTAAGAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAATTAATA
* * * * * * ** **
29684251 TTTAGAATTATTGTTTGGGTTTTTAATTAAAATGATTGGTAATATGT
66 ATTAAAATGATTGTATAGGTCTAGAATTAAAATGATTGAAAATATGT
* **
29684298 TAGAATTAAACATTAAGAATTATGTTTGGGAATTAATGTTTAGAATTATTGTTT-GG-ATTTTTA
1 TAGAATTAAACATTAAGAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAATTAATA
*
29684361 ATTAAAATGATTGGTAATATG-CTAGAATTAAA
66 ATTAAAATGATT-GT-ATAGGTCTAGAATTAAA
29684393 TATTAAAAGT
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
110 14 0.17
111 12 0.15
112 55 0.68
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.44
Consensus pattern (112 bp):
TAGAATTAAACATTAAGAATTATGTTTGGGAATTAATATTTAGAATTATTGTTTGGGAATTAATA
ATTAAAATGATTGTATAGGTCTAGAATTAAAATGATTGAAAATATGT
Found at i:29687139 original size:25 final size:25
Alignment explanation
Indices: 29687107--29687160 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
29687097 CTTTTGAAAC
*
29687107 TAATGTTTATTTATTATATAAAGAT
1 TAATGTTTATTTATTACATAAAGAT
* *
29687132 TAATGTTTATTTATTGCATGAAGAT
1 TAATGTTTATTTATTACATAAAGAT
29687157 TAAT
1 TAAT
29687161 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.02, G:0.11, T:0.50
Consensus pattern (25 bp):
TAATGTTTATTTATTACATAAAGAT
Found at i:29687286 original size:22 final size:22
Alignment explanation
Indices: 29687251--29687301 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
29687241 GAAATTATAT
**
29687251 AAAAAAAGGCCCATGTCAAACA
1 AAAAAAAGAACCATGTCAAACA
* **
29687273 AAAAAAAGAACCATTTTGAACA
1 AAAAAAAGAACCATGTCAAACA
29687295 AAAAAAA
1 AAAAAAA
29687302 ACCCAACTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.63, C:0.16, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAAAAAGAACCATGTCAAACA
Found at i:29690949 original size:15 final size:15
Alignment explanation
Indices: 29690929--29690958 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
29690919 AGATTTCAAG
*
29690929 TAAAAATTAATTTAT
1 TAAAAAGTAATTTAT
29690944 TAAAAAGTAATTTAT
1 TAAAAAGTAATTTAT
29690959 ATATTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
TAAAAAGTAATTTAT
Found at i:29693070 original size:18 final size:18
Alignment explanation
Indices: 29693035--29693077 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
29693025 AATGCACCAA
*
29693035 CTATTCTCTCTTCTTCTT
1 CTATACTCTCTTCTTCTT
29693053 CTATACTCTCTT-TCTCTT
1 CTATACTCTCTTCT-TCTT
*
29693071 CTCTACT
1 CTATACT
29693078 TTACTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.09, C:0.35, G:0.00, T:0.56
Consensus pattern (18 bp):
CTATACTCTCTTCTTCTT
Found at i:29699756 original size:23 final size:24
Alignment explanation
Indices: 29699709--29699752 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
29699699 CCTAAGGCAT
*
29699709 AAATGAATGATGAAAATGAGGATA
1 AAATGAATGATGAAAATGAGAATA
29699733 AAATG-ATGATGAAAAT-AGAA
1 AAATGAATGATGAAAATGAGAA
29699753 ATAATGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 11 0.58
24 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (24 bp):
AAATGAATGATGAAAATGAGAATA
Found at i:29700734 original size:37 final size:37
Alignment explanation
Indices: 29700685--29700803 Score: 202
Period size: 37 Copynumber: 3.2 Consensus size: 37
29700675 TAATGTTGTG
* *
29700685 TGATGATGTTGAAGTGTACGAGTAGGGAGGGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
* *
29700722 TGATGATGTTGAAGTGTGTGAGTAGGGAGTGCACACG
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
29700759 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
29700796 TGATGATG
1 TGATGATG
29700804 ATATTGCATT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 76 1.00
ACGTcount: A:0.27, C:0.09, G:0.39, T:0.25
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:29700866 original size:2 final size:2
Alignment explanation
Indices: 29700861--29700897 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
29700851 TGTATATATA
29700861 TG TG TG TG T- TCG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG T
29700898 TATAGAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 31 0.94
3 1 0.03
ACGTcount: A:0.00, C:0.03, G:0.46, T:0.51
Consensus pattern (2 bp):
TG
Found at i:29705320 original size:39 final size:38
Alignment explanation
Indices: 29705272--29705426 Score: 148
Period size: 39 Copynumber: 4.0 Consensus size: 38
29705262 AGAGTGTTTT
* * *
29705272 GAATGCTACTTGTAGTGCTTATTCTCTTGAAGGTGTTCC
1 GAATACTACTTGCAATGCTTATTCT-TTGAAGGTGTTCC
* * *
29705311 GAGTACTACTTGCAATGTTTATTCTTTTGAAGGTGTTTC
1 GAATACTACTTGCAATGCTTATTC-TTTGAAGGTGTTCC
* *
29705350 GAATACTACTTGCAATGCTTCTTCTTTTAGAGGTGTTCC
1 GAATACTACTTGCAATGCTTATTCTTTGA-AGGTGTTCC
* * * * * *
29705389 AAATTCTACTTACAATTCTTTTTCTTCTAAAGGTGTTC
1 GAATACTACTTGCAATGCTTATTCTT-TGAAGGTGTTC
29705427 TAAATACCAC
Statistics
Matches: 96, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
38 4 0.04
39 89 0.93
40 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.44
Consensus pattern (38 bp):
GAATACTACTTGCAATGCTTATTCTTTGAAGGTGTTCC
Found at i:29705384 original size:78 final size:78
Alignment explanation
Indices: 29705241--29705388 Score: 185
Period size: 78 Copynumber: 1.9 Consensus size: 78
29705231 CTTGGTGTTG
* * * *
29705241 CTTGCAACGTTTTCTCTTTTAAGAGTGTTTTGAATGCTACTTGTAGTGCTTATTCTCTTGAAGGT
1 CTTGCAACGTTTTCTCTTTTAAGAGTGTTTCGAATACTACTTGCAATGCTTATTCTCTTGAAGGT
29705306 GTTCCGAGTACTA
66 GTTCCGAGTACTA
* * *
29705319 CTTGCAATGTTTAT-TCTTTTGAAG-GTGTTTCGAATACTACTTGCAATGCTTCTTCT-TTTAGA
1 CTTGCAACGTTT-TCTCTTTT-AAGAGTGTTTCGAATACTACTTGCAATGCTTATTCTCTTGA-A
29705381 GGTGTTCC
63 GGTGTTCC
29705389 AAATTCTACT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
77 3 0.05
78 53 0.88
79 4 0.07
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.45
Consensus pattern (78 bp):
CTTGCAACGTTTTCTCTTTTAAGAGTGTTTCGAATACTACTTGCAATGCTTATTCTCTTGAAGGT
GTTCCGAGTACTA
Found at i:29705414 original size:78 final size:77
Alignment explanation
Indices: 29705249--29705425 Score: 178
Period size: 78 Copynumber: 2.3 Consensus size: 77
29705239 TGCTTGCAAC
* * * * * * *
29705249 GTTTTCTCTTTTAAGAGTGTTTTGAATGCTACTTGTAGTGCTTATTCTCTTGAAGGTGTTCCGAG
1 GTTTTTTCTTTTAAG-GTGTTTCGAATACTACTTGCAATGCTTATTCTCTTGAAGGTGTTCCAAA
*
29705314 TACTACTTGCAAT
65 TACTACTTACAAT
* * *
29705327 GTTTATTCTTTTGAAGGTGTTTCGAATACTACTTGCAATGCTTCTTCT-TTTAGAGGTGTTCCAA
1 GTTTTTTCTTTT-AAGGTGTTTCGAATACTACTTGCAATGCTTATTCTCTTGA-AGGTGTTCCAA
*
29705391 ATTCTACTTACAAT
64 ATACTACTTACAAT
*
29705405 -TCTTTTTCTTCTAAAGGTGTT
1 GT-TTTTTCTT-TTAAGGTGTT
29705426 CTAAATACCA
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
77 4 0.05
78 73 0.90
79 4 0.05
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.46
Consensus pattern (77 bp):
GTTTTTTCTTTTAAGGTGTTTCGAATACTACTTGCAATGCTTATTCTCTTGAAGGTGTTCCAAAT
ACTACTTACAAT
Found at i:29705443 original size:39 final size:39
Alignment explanation
Indices: 29705362--29705452 Score: 94
Period size: 39 Copynumber: 2.3 Consensus size: 39
29705352 ATACTACTTG
* * * * * *
29705362 CAATGCTTCTTCTTTTAGAGGTGTTCCAAATTCTACTTA
1 CAATTCTTCTTCTTCTAAAGGTGTTCCAAATACCACTCA
* *
29705401 CAATTCTTTTTCTTCTAAAGGTGTTCTAAATACCACTCA
1 CAATTCTTCTTCTTCTAAAGGTGTTCCAAATACCACTCA
29705440 CAATT-TTCCTTCT
1 CAATTCTT-CTTCT
29705453 CCTTTTCGGG
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
38 2 0.05
39 40 0.95
ACGTcount: A:0.24, C:0.23, G:0.09, T:0.44
Consensus pattern (39 bp):
CAATTCTTCTTCTTCTAAAGGTGTTCCAAATACCACTCA
Found at i:29709277 original size:24 final size:24
Alignment explanation
Indices: 29709228--29709412 Score: 82
Period size: 24 Copynumber: 8.0 Consensus size: 24
29709218 GTTACACGCT
*
29709228 ATGTACAAAAATATGTGACACA-CC
1 ATGTACAAAAACATGTGACA-AGCC
*
29709252 ATGTACAAAAACCTGTGACAAGCC
1 ATGTACAAAAACATGTGACAAGCC
* *** * * *
29709276 ATGGT----TAGTGTGTTACACGCT
1 AT-GTACAAAAACATGTGACAAGCC
* * * *
29709297 ATGTACAAAAATATGTGATACGCT
1 ATGTACAAAAACATGTGACAAGCC
*
29709321 ATGTACAAAAACCTGTGACAAGCC
1 ATGTACAAAAACATGTGACAAGCC
* * * *
29709345 ATGGT----TAACTTGTTACATGCC
1 AT-GTACAAAAACATGTGACAAGCC
* * *
29709366 ATGTACAAAAATATATGATAAGCC
1 ATGTACAAAAACATGTGACAAGCC
*
29709390 ATGTACAAAAACCTGTGACAAGC
1 ATGTACAAAAACATGTGACAAGC
29709413 TATGGTTAGC
Statistics
Matches: 116, Mismatches: 34, Indels: 22
0.67 0.20 0.13
Matches are distributed among these distances:
20 4 0.03
21 25 0.22
23 1 0.01
24 82 0.71
25 4 0.03
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (24 bp):
ATGTACAAAAACATGTGACAAGCC
Found at i:29709452 original size:45 final size:45
Alignment explanation
Indices: 29709388--29709490 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 45
29709378 ATATGATAAG
*
29709388 CCATGTACAAAAACCTGTGACAAGCTATGGTTAGCT-TGTTACACA
1 CCATGTACAAAAACCTGTGACAAGCCATGGTTAG-TGTGTTACACA
* * *
29709433 CCATGTACAAAAACTTGTGACAGGCCATGGTTAGTGTGTTACACG
1 CCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACA
**
29709478 TTATGTACAAAAA
1 CCATGTACAAAAA
29709491 TATATGACAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (45 bp):
CCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACA
Found at i:29709454 original size:114 final size:114
Alignment explanation
Indices: 29709321--29709573 Score: 339
Period size: 114 Copynumber: 2.2 Consensus size: 114
29709311 GTGATACGCT
* * *
29709321 ATGTACAAAAACCTGTGACAAGCCATGGTTAACT-TGTTACATGCCATGTACAAAAATATATGAT
1 ATGTACAAAAACTTGTGACAAGCCATGGTT-ACTGTGTTACACGCCATGTACAAAAATATATGAC
* * *
29709385 AAGCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCTTGTTACACACC
65 AAGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACACACC
* * **
29709435 ATGTACAAAAACTTGTGACAGGCCATGGTTAGTGTGTTACACGTTATGTACAAAAATATATGACA
1 ATGTACAAAAACTTGTGACAAGCCATGGTTACTGTGTTACACGCCATGTACAAAAATATATGACA
* * ** *
29709500 CGTCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCT
66 AGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACACACC
29709549 ATGTACAAAAA-TATGTGACAAGCCA
1 ATGTACAAAAACT-TGTGACAAGCCA
29709574 AGTACAAAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
113 3 0.02
114 118 0.98
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (114 bp):
ATGTACAAAAACTTGTGACAAGCCATGGTTACTGTGTTACACGCCATGTACAAAAATATATGACA
AGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACACACC
Found at i:29709460 original size:69 final size:69
Alignment explanation
Indices: 29709171--29709461 Score: 388
Period size: 69 Copynumber: 4.2 Consensus size: 69
29709161 ACACGCTATG
* * * * * *
29709171 ATGTTACACACCATGTACAAAAATCTATGACAAGCCATGGTTAGCGTGTTACACGCTATGTACAA
1 ATGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACACGCCATGTACAA
29709236 AAAT
66 AAAT
* *
29709240 ATGTGACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAG-TGTGTTACACGCTATGTACA
1 ATGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCT-TGTTACACGCCATGTACA
29709304 AAAAT
65 AAAAT
* * * *
29709309 ATGTGATACGCTATGTACAAAAACCTGTGACAAGCCATGGTTAACTTGTTACATGCCATGTACAA
1 ATGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACACGCCATGTACAA
29709374 AAAT
66 AAAT
* * * * *
29709378 ATATGATAAGCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCTTGTTACACACCATGTACAA
1 ATGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACACGCCATGTACAA
29709443 AAACT
66 AAA-T
*
29709448 -TGTGACAGGCCATG
1 ATGTGACACGCCATG
29709462 GTTAGTGTGT
Statistics
Matches: 199, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
69 197 0.99
70 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (69 bp):
ATGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACACGCCATGTACAA
AAAT
Found at i:29709485 original size:183 final size:183
Alignment explanation
Indices: 29709245--29709649 Score: 677
Period size: 183 Copynumber: 2.2 Consensus size: 183
29709235 AAAATATGTG
29709245 ACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATA
1 ACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATA
* * *
29709310 TGTGATACG-CTATGTACAAAAACCTGTGACAAGCCATGGTTAACTTGTTACATGCCATGTACAA
66 TATGACACGTC-ATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCCATGTACAA
* * *
29709374 AAATATATGATAAGCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCTTGTT
130 AAATATATGACAAGCCAAGTACAAAAACCTATGACAAGCTATGGTTAGCTTGTT
* * *
29709428 ACACACCATGTACAAAAACTTGTGACAGGCCATGGTTAGTGTGTTACACGTTATGTACAAAAATA
1 ACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATA
*
29709493 TATGACACGTCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCTATGTACAAA
66 TATGACACGTCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCCATGTACAAA
* *
29709558 AATATGTGACAAGCCAAGTACAAAAACCTATGATAAGCTATGGTTAGCTTGTT
131 AATATATGACAAGCCAAGTACAAAAACCTATGACAAGCTATGGTTAGCTTGTT
*
29709611 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAG
1 ACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAG
29709650 GTTATTACAC
Statistics
Matches: 206, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
183 205 1.00
184 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (183 bp):
ACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATA
TATGACACGTCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCCATGTACAAA
AATATATGACAAGCCAAGTACAAAAACCTATGACAAGCTATGGTTAGCTTGTT
Found at i:29709507 original size:69 final size:69
Alignment explanation
Indices: 29709433--29709644 Score: 255
Period size: 69 Copynumber: 3.1 Consensus size: 69
29709423 TTGTTACACA
* * *
29709433 CCATGTACAAAAACTTGTGACAGGCCATGGTTAGTGTGTTACACGTTATGTACAAAAATATATGA
1 CCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATATATGA
*
29709498 CACG
66 CAAG
* ** * *
29709502 TCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCTATGTACAAAAATATGTGA
1 CCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATATATGA
29709567 CAAG
66 CAAG
* * * * * ** *
29709571 CCAAGTACAAAAACCTATGATAAGCTATGGTTAGCT-TGTTACACGCCATGTACAAAAACCTGTG
1 CCATGTACAAAAACCTGTGACAAGCCATGGTTAG-TGTGTTACACGCTATGTACAAAAATATATG
29709635 ACAAG
65 ACAAG
29709640 CCATG
1 CCATG
29709645 GTTAGGTTAT
Statistics
Matches: 121, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
69 121 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (69 bp):
CCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAATATATGA
CAAG
Found at i:29709530 original size:24 final size:24
Alignment explanation
Indices: 29709480--29709644 Score: 67
Period size: 24 Copynumber: 7.1 Consensus size: 24
29709470 GTTACACGTT
** * * *
29709480 ATGTACAAAAATATATGACACGTC
1 ATGTACAAAAACCTGTGACAAGCC
29709504 ATGTACAAAAACCTGTGACAAGCC
1 ATGTACAAAAACCTGTGACAAGCC
* * * * *
29709528 ATGGT----TAACGTGTTACATGCT
1 AT-GTACAAAAACCTGTGACAAGCC
**
29709549 ATGTACAAAAATATGTGACAAGCC
1 ATGTACAAAAACCTGTGACAAGCC
* * * *
29709573 AAGTACAAAAACCTATGATAAGCT
1 ATGTACAAAAACCTGTGACAAGCC
* * * * *
29709597 ATGGT----TAGCTTGTTACACGCC
1 AT-GTACAAAAACCTGTGACAAGCC
29709618 ATGTACAAAAACCTGTGACAAGCC
1 ATGTACAAAAACCTGTGACAAGCC
29709642 ATG
1 ATG
29709645 GTTAGGTTAT
Statistics
Matches: 95, Mismatches: 36, Indels: 20
0.63 0.24 0.13
Matches are distributed among these distances:
20 4 0.04
21 23 0.24
24 64 0.67
25 4 0.04
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (24 bp):
ATGTACAAAAACCTGTGACAAGCC
Found at i:29709621 original size:252 final size:252
Alignment explanation
Indices: 29709172--29709628 Score: 727
Period size: 252 Copynumber: 1.8 Consensus size: 252
29709162 CACGCTATGA
29709172 TGTTACACACCATGTACAAAAATCTATGACAAGCCATGGTTAGCGTGTTACACGCTATGTACAAA
1 TGTTACACACCATGTACAAAAATCTATGACAAGCCATGGTTAGCGTGTTACACGCTATGTACAAA
* **
29709237 AATATGTGACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTA
66 AATATATGACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACACGCTATGTA
* * * * * *
29709302 CAAAAATATGTGATACGCTATGTACAAAAACCTGTGACAAGCCATGGTTAACTTGTTACATGCCA
131 CAAAAATATGTGACAAGCCAAGTACAAAAACCTATGACAAGCCATGGTTAACTTGTTACACGCCA
29709367 TGTACAAAAATATATGATAAGCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCT
196 TGTACAAAAATATATGATAAGCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCT
* * * *
29709424 TGTTACACACCATGTACAAAAA-CTTGTGACAGGCCATGGTTAGTGTGTTACACGTTATGTACAA
1 TGTTACACACCATGTACAAAAATC-TATGACAAGCCATGGTTAGCGTGTTACACGCTATGTACAA
** *
29709488 AAATATATGACACGTCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACATGCTATGT
65 AAATATATGACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACACGCTATGT
* * *
29709553 ACAAAAATATGTGACAAGCCAAGTACAAAAACCTATGATAAGCTATGGTTAGCTTGTTACACGCC
130 ACAAAAATATGTGACAAGCCAAGTACAAAAACCTATGACAAGCCATGGTTAACTTGTTACACGCC
29709618 ATGTACAAAAA
195 ATGTACAAAAA
29709629 CCTGTGACAA
Statistics
Matches: 185, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
251 1 0.01
252 184 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (252 bp):
TGTTACACACCATGTACAAAAATCTATGACAAGCCATGGTTAGCGTGTTACACGCTATGTACAAA
AATATATGACACACCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTTACACGCTATGTA
CAAAAATATGTGACAAGCCAAGTACAAAAACCTATGACAAGCCATGGTTAACTTGTTACACGCCA
TGTACAAAAATATATGATAAGCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCT
Found at i:29709625 original size:45 final size:45
Alignment explanation
Indices: 29709570--29709664 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 45
29709560 TATGTGACAA
* * * *
29709570 GCCAAGTACAAAAACCTATGATAAGCTATGGTTAGCTTGTTACAC
1 GCCATGTACAAAAACCTATGACAAGCCATGGTTAGCTTATTACAC
* *
29709615 GCCATGTACAAAAACCTGTGACAAGCCATGGTTAGGTTATTACAC
1 GCCATGTACAAAAACCTATGACAAGCCATGGTTAGCTTATTACAC
*
29709660 ACCAT
1 GCCAT
29709665 ATTGAAAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (45 bp):
GCCATGTACAAAAACCTATGACAAGCCATGGTTAGCTTATTACAC
Found at i:29709701 original size:29 final size:28
Alignment explanation
Indices: 29709667--29709800 Score: 84
Period size: 29 Copynumber: 4.9 Consensus size: 28
29709657 CACACCATAT
29709667 TGAAAAAAAATATTGTTGTTACACGTCA
1 TGAAAAAAAATATTGTTGTTACACGTCA
* * *
29709695 TGCAAAAAAACA----TGTTACACATCA
1 TGAAAAAAAATATTGTTGTTACACGTCA
*** *
29709719 TGGTTAAAAA-A-GGTTGTTACACGTCA
1 TGAAAAAAAATATTGTTGTTACACGTCA
* *
29709745 TGTTGAAAAAAAATATTGTTGTTACATGCCA
1 ---TGAAAAAAAATATTGTTGTTACACGTCA
*
29709776 T-ATTGAAAAAATATTGTTGTTACAC
1 TGA--AAAAAAATATTGTTGTTACAC
29709801 CACATATTCA
Statistics
Matches: 81, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
23 1 0.01
24 18 0.22
26 11 0.14
27 1 0.01
28 11 0.14
29 26 0.32
30 1 0.01
31 12 0.15
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (28 bp):
TGAAAAAAAATATTGTTGTTACACGTCA
Found at i:29709727 original size:26 final size:26
Alignment explanation
Indices: 29709698--29709756 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
29709688 CACGTCATGC
29709698 AAAAAAACATGTTACACATCATGGTT-
1 AAAAAAACATGTTACACATCAT-GTTG
*** *
29709724 AAAAAAGGTTGTTACACGTCATGTTG
1 AAAAAAACATGTTACACATCATGTTG
29709750 AAAAAAA
1 AAAAAAA
29709757 ATATTGTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.25
Consensus pattern (26 bp):
AAAAAAACATGTTACACATCATGTTG
Found at i:29709769 original size:31 final size:29
Alignment explanation
Indices: 29709731--29709827 Score: 101
Period size: 29 Copynumber: 3.3 Consensus size: 29
29709721 GTTAAAAAAG
* *
29709731 GTTGTTACACGTCATGTTGAAAAAAAATATT
1 GTTGTTACACGCCATATTG--AAAAAATATT
*
29709762 GTTGTTACATGCCATATTGAAAAAATATT
1 GTTGTTACACGCCATATTGAAAAAATATT
* *
29709791 GTTGTTACAC-CACATATT-CAAAAACATT
1 GTTGTTACACGC-CATATTGAAAAAATATT
29709819 -TTGTTACAC
1 GTTGTTACAC
29709828 TTTAATGCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
27 9 0.15
28 9 0.15
29 25 0.42
31 16 0.27
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36
Consensus pattern (29 bp):
GTTGTTACACGCCATATTGAAAAAATATT
Found at i:29711002 original size:55 final size:54
Alignment explanation
Indices: 29710911--29711096 Score: 174
Period size: 55 Copynumber: 3.4 Consensus size: 54
29710901 TGAAGAGTTA
* * * * *
29710911 TTTTAGCGTGTCACGACTGTTACTAGCGTGTTGTGGGCTAACTAGTTATTTGGGT
1 TTTTAGCGTGTCACGGCTGTTCCTGGCGTGTCGTGGGTTAACTAGTT-TTTGGGT
* * * * *
29710966 TGTTAGCGTGTCACGGCTGTTCCTGGGGTGTGGTGGGTTAACTGAATTTATGGGT
1 TTTTAGCGTGTCACGGCTGTTCCTGGCGTGTCGTGGGTTAACT-AGTTTTTGGGT
* * * * * * *
29711021 TTTTGGCGTGTCATGGCTATTCCTGACATGTCATGGGTTAACTAGTTTTTTGAGT
1 TTTTAGCGTGTCACGGCTGTTCCTGGCGTGTCGTGGGTTAACTAG-TTTTTGGGT
* *
29711076 TTTTAGCGTGCCACGGATGTT
1 TTTTAGCGTGTCACGGCTGTT
29711097 GGTGTAACCA
Statistics
Matches: 103, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
54 1 0.01
55 99 0.96
56 3 0.03
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.40
Consensus pattern (54 bp):
TTTTAGCGTGTCACGGCTGTTCCTGGCGTGTCGTGGGTTAACTAGTTTTTGGGT
Found at i:29711158 original size:31 final size:31
Alignment explanation
Indices: 29711123--29711202 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
29711113 AATTACAGTG
*
29711123 ATGCATGGCGTGTCACAACATTTGAC-TTGAT
1 ATGCATGGCGTGTAACAACATTTGACGTT-AT
* * * *
29711154 ATGCATGACGGGTTACAACATTTTACGTTAT
1 ATGCATGGCGTGTAACAACATTTGACGTTAT
29711185 ATGCATGGCGTGTAACAA
1 ATGCATGGCGTGTAACAA
29711203 TACGACTGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 39 0.95
32 2 0.05
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (31 bp):
ATGCATGGCGTGTAACAACATTTGACGTTAT
Found at i:29712725 original size:31 final size:31
Alignment explanation
Indices: 29712679--29712986 Score: 352
Period size: 31 Copynumber: 10.0 Consensus size: 31
29712669 AATAAGGAAT
*
29712679 AAATG-TGAGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
29712709 AAATGTTGTGACACGCCGTGCATATCAAATA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * * * *
29712740 AAATATTGTAACACACCATTCATGACAAGAA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
***
29712771 AAATGAAATGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
29712802 AAATGTTGTGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
29712833 AATTG-TGCTGACACGCCATGCATAACAAGTT
1 AAATGTTG-TGACACGCCATGCATAACAAGTA
** *
29712864 AAACATTGTGACACGTCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
29712895 AAAGGTTGTGGCACGCCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
29712926 AAACGTTGTGACACGCCATGCATAACAATTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
29712957 AATTGTTCTGAC-CTGCCATGCATAACAAGT
1 AAATGTTGTGACAC-GCCATGCATAACAAGT
29712987 TCTGATGTGT
Statistics
Matches: 229, Mismatches: 45, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
30 8 0.03
31 219 0.96
32 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:29713668 original size:14 final size:14
Alignment explanation
Indices: 29713649--29713709 Score: 59
Period size: 14 Copynumber: 4.1 Consensus size: 14
29713639 TATATCTGTT
*
29713649 TACAATGAATTGTA
1 TACAATAAATTGTA
29713663 TACAATAAATTACGTA
1 TACAATAAATT--GTA
*
29713679 TACAAAAAATATGTA
1 TACAATAAAT-TGTA
* *
29713694 TAAAATGAATTGTA
1 TACAATAAATTGTA
29713708 TA
1 TA
29713710 AAAAAATTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
14 16 0.41
15 10 0.26
16 12 0.31
17 1 0.03
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.33
Consensus pattern (14 bp):
TACAATAAATTGTA
Found at i:29713694 original size:31 final size:28
Alignment explanation
Indices: 29713659--29713716 Score: 71
Period size: 31 Copynumber: 2.0 Consensus size: 28
29713649 TACAATGAAT
*
29713659 TGTATACAATAAATTACGTATACAAAAAATA
1 TGTATAAAATAAATT--GTATA-AAAAAATA
*
29713690 TGTATAAAATGAATTGTATAAAAAAAT
1 TGTATAAAATAAATTGTATAAAAAAAT
29713717 TTATGTGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 5 0.20
31 13 0.52
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.31
Consensus pattern (28 bp):
TGTATAAAATAAATTGTATAAAAAAATA
Found at i:29713710 original size:14 final size:14
Alignment explanation
Indices: 29713656--29713717 Score: 56
Period size: 14 Copynumber: 4.3 Consensus size: 14
29713646 GTTTACAATG
*
29713656 AATTGTATACAATA
1 AATTGTATAAAATA
29713670 AATTACGTATACAAA-A
1 AATT--GTATA-AAATA
*
29713686 AATATGTATAAAATG
1 AAT-TGTATAAAATA
29713701 AATTGTATAAAA-A
1 AATTGTATAAAATA
29713714 AATT
1 AATT
29713718 TATGTGTACT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
13 4 0.10
14 16 0.40
15 8 0.20
16 9 0.22
17 3 0.08
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (14 bp):
AATTGTATAAAATA
Found at i:29715219 original size:31 final size:30
Alignment explanation
Indices: 29715181--29715480 Score: 235
Period size: 31 Copynumber: 9.7 Consensus size: 30
29715171 AACCATAAAT
*
29715181 AGTAAAATGTTGTGACACGCAGTGCATACCA
1 AGTAAAATGTTGTGACACGCA-TGCATAACA
* * *
29715212 AGTAAAATGTTGTCACACACCATGCAAAACA
1 AGTAAAATGTTGTGACAC-GCATGCATAACA
*
29715243 AGTAAAATGTCGTGACACGCCATGCATAACA
1 AGTAAAATGTTGTGACACG-CATGCATAACA
* * * *
29715274 AGATAAACT-TGGTGACACGTCAAGGATAACA
1 AG-TAAAATGTTGTGACACG-CATGCATAACA
* * *
29715305 AGGAAAATGTTGTGACATGCCATGCAAAACA
1 AGTAAAATGTTGTGACACG-CATGCATAACA
* *
29715336 ATTAAAATGTTGTGACACACCATGCATAACA
1 AGTAAAATGTTGTGACAC-GCATGCATAACA
* * * **
29715367 AGATAAACT-TGGTGACACGCTAAGGGTAACA
1 AG-TAAAATGTTGTGACACGC-ATGCATAACA
* * * *
29715398 AGCAAAATGTTTTGACACACCATGCATATCAA
1 AGTAAAATGTTGTGACAC-GCATGCATAAC-A
* * * *
29715430 AATCAAACGTTGTGACACGCCATGAATAACA
1 AGTAAAATGTTGTGACACG-CATGCATAACA
29715461 AGTAAAATGTTGTGACACGC
1 AGTAAAATGTTGTGACACGC
29715481 TAAAGCTGAC
Statistics
Matches: 205, Mismatches: 53, Indels: 23
0.73 0.19 0.08
Matches are distributed among these distances:
30 10 0.05
31 160 0.78
32 35 0.17
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (30 bp):
AGTAAAATGTTGTGACACGCATGCATAACA
Found at i:29715333 original size:93 final size:93
Alignment explanation
Indices: 29715210--29715483 Score: 345
Period size: 93 Copynumber: 2.9 Consensus size: 93
29715200 CAGTGCATAC
* * * *
29715210 CAAGTAAAATGTTGTCACACACCATGCAAAACAAGTAAAATGTCGTGACACGCCATGCATAACAA
1 CAAGCAAAATGTTGTGACACACCATGCAAAACAAATAAAATGTTGTGACACGCCATGCATAACAA
29715275 GATAAACTTGGTGACACG-TCAAGGATAA
66 GATAAACTTGGTGACACGCT-AAGGATAA
* ** * *
29715303 CAAGGAAAATGTTGTGACATGCCATGCAAAACAATTAAAATGTTGTGACACACCATGCATAACAA
1 CAAGCAAAATGTTGTGACACACCATGCAAAACAAATAAAATGTTGTGACACGCCATGCATAACAA
*
29715368 GATAAACTTGGTGACACGCTAAGGGTAA
66 GATAAACTTGGTGACACGCTAAGGATAA
* * * * * *
29715396 CAAGCAAAATGTTTTGACACACCATGCATATCAAAATCAAACGTTGTGACACGCCATGAATAACA
1 CAAGCAAAATGTTGTGACACACCATGCAAAAC-AAATAAAATGTTGTGACACGCCATGCATAACA
* *
29715461 AG-TAAAATGTTGTGACACGCTAA
65 AGATAAACT-TGGTGACACGCTAA
29715484 AGCTGACACG
Statistics
Matches: 157, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
93 114 0.73
94 43 0.27
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.21
Consensus pattern (93 bp):
CAAGCAAAATGTTGTGACACACCATGCAAAACAAATAAAATGTTGTGACACGCCATGCATAACAA
GATAAACTTGGTGACACGCTAAGGATAA
Found at i:29716299 original size:156 final size:156
Alignment explanation
Indices: 29715846--29716331 Score: 536
Period size: 156 Copynumber: 3.1 Consensus size: 156
29715836 AACTATAATA
* * * * *
29715846 ACATATATAATTGTGTTATTCAATAATCATATATGAAATTATTGAATATTAA-TCATTACAACTT
1 ACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACT-GTTACAACTT
* * * * * * * *
29715910 TAATATCCTAACCG-GAGGCTCATTAGCAATCTGTGATGGAGCTGGACAGATGGGTGCTTCAGGA
65 TAATATCCTTACCGCGA--CTCGTTAGCTATCTGCGGTAGAGCTGGACCGATCGGTGCTTCAGGA
* *
29715974 CCTGTCGTCGCTT-TCGCATACTGCAATT
128 CCTATCGTCGCTTCTCGCAAACTGCAATT
*
29716002 ACATATTTAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACTGTTACAACTTT
1 ACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACTGTTACAACTTT
* * *
29716067 AATATCCTTACCGCCAGCTCGTTAGCTATCTGCGGTAGAG-TCGGACCGATCGATGCTTCAAGAC
66 AATATCCTTACCGCGA-CTCGTTAGCTATCTGCGGTAGAGCT-GGACCGATCGGTGCTTCAGGAC
*
29716131 CTATCATCGCTTCT-GCAAACTGCAATT
129 CTATCGTCGCTTCTCGCAAACTGCAATT
* * * *
29716158 ATATATATAACTATGTTATTCAATAATCATGTTTGGAATTGTTGAACATTAACTGTTACAACTTT
1 ACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACTGTTACAACTTT
* * * * * * *
29716223 AATATCCTTACCGCTGACTTGTTAACTGTCTGCGGTTGAGCTGGACCGATCGGTACTTGAGGACT
66 AATATCCTTACCGC-GACTCGTTAGCTATCTGCGGTAGAGCTGGACCGATCGGTGCTTCAGGACC
* * **
29716288 TATCGTTGCTTC-CGTAAACTATAATT
130 TATCGTCGCTTCTCGCAAACTGCAATT
*
29716314 ACATGA-ATTACTGTGTTA
1 ACAT-ATATAACTGTGTTA
29716332 CTCGATAAAC
Statistics
Matches: 279, Mismatches: 43, Indels: 16
0.83 0.13 0.05
Matches are distributed among these distances:
155 1 0.00
156 272 0.97
157 6 0.02
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (156 bp):
ACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACTGTTACAACTTT
AATATCCTTACCGCGACTCGTTAGCTATCTGCGGTAGAGCTGGACCGATCGGTGCTTCAGGACCT
ATCGTCGCTTCTCGCAAACTGCAATT
Found at i:29718002 original size:31 final size:31
Alignment explanation
Indices: 29717964--29718256 Score: 251
Period size: 31 Copynumber: 9.5 Consensus size: 31
29717954 AATAAGGAAT
29717964 AAATGTTGTGACACGCCATGCATTACAA-TCA
1 AAATGTTGTGACACGCCATGCATTACAAGT-A
* *
29717995 AAATGTTGTGACAC-CCTATGCATAACGAGTA
1 AAATGTTGTGACACGCC-ATGCATTACAAGTA
* *
29718026 AAATGTTGTGACACGCCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCATTACAAGTA
* * * *
29718057 AAACGTTGTGACATGCCATACATCT-CAAGTT
1 AAATGTTGTGACACGCCATGCAT-TACAAGTA
* * *
29718088 AAACGTTATGACACACCATGCA-TATCAAGTA
1 AAATGTTGTGACACGCCATGCATTA-CAAGTA
* * * *
29718119 AAATGTTGTCAAACGCCATGTATAACAAGTA
1 AAATGTTGTGACACGCCATGCATTACAAGTA
*
29718150 AAAT-TCTGTGACACGACATGCA-TATCAAGTA
1 AAATGT-TGTGACACGCCATGCATTA-CAAGTA
*
29718181 AAATGCTGTGACACGCCATGCA-TATCAAGTA
1 AAATGTTGTGACACGCCATGCATTA-CAAGTA
* * * *
29718212 AAATGCTGTCACGCGCTATGCA-TATCAAGTA
1 AAATGTTGTGACACGCCATGCATTA-CAAGTA
* *
29718243 AAATGCTGTCACAC
1 AAATGTTGTGACAC
29718257 ACTAATAACT
Statistics
Matches: 221, Mismatches: 31, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
29 1 0.00
30 4 0.02
31 212 0.96
32 4 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATTACAAGTA
Found at i:29718065 original size:62 final size:62
Alignment explanation
Indices: 29717964--29718256 Score: 306
Period size: 62 Copynumber: 4.7 Consensus size: 62
29717954 AATAAGGAAT
*
29717964 AAATGTTGTGACACGCCATGCAT-TACAA-TCAAAATGTTGTGACAC-CCTATGCATAACGAGTA
1 AAATGTTGTGACACGCCATGCATAT-CAAGT-AAAATGTTGTGACACGCC-ATGCATAACAAGTA
* * * * * ** *
29718026 AAATGTTGTGACACGCCATGCATAACAAGTTAAACGTTGTGACATGCCATACATCTCAAGTT
1 AAATGTTGTGACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCATGCATAACAAGTA
* * * * * *
29718088 AAACGTTATGACACACCATGCATATCAAGTAAAATGTTGTCAAACGCCATGTATAACAAGTA
1 AAATGTTGTGACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCATGCATAACAAGTA
* * *
29718150 AAAT-TCTGTGACACGACATGCATATCAAGTAAAATGCTGTGACACGCCATGCATATCAAGTA
1 AAATGT-TGTGACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCATGCATAACAAGTA
* * * * * *
29718212 AAATGCTGTCACGCGCTATGCATATCAAGTAAAATGCTGTCACAC
1 AAATGTTGTGACACGCCATGCATATCAAGTAAAATGTTGTGACAC
29718257 ACTAATAACT
Statistics
Matches: 188, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
61 1 0.01
62 184 0.98
63 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (62 bp):
AAATGTTGTGACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:29718246 original size:93 final size:91
Alignment explanation
Indices: 29717970--29718256 Score: 308
Period size: 93 Copynumber: 3.1 Consensus size: 91
29717960 GAATAAATGT
* *
29717970 TGTGACACGCCATGCATTACAA-TCAAAATGTTGTGACACCCTATGCATAACGAGTAAAATGTTG
1 TGTGACACGCCATGCATT-CAAGT-AAAATGTTGTGACACCC-ATGCATATCAAGTAAAATGTTG
* **
29718034 TGACACGCCATGCATAACAAGTTAAACGT-
63 TCACACGCCATGCATAACAAG-TAAAATTC
* * * * *
29718063 TGTGACATGCCATACATCTCAAGTTAAACGTTATGACACACCATGCATATCAAGTAAAATGTTGT
1 TGTGACACGCCATGCAT-TCAAGTAAAATGTTGTGACAC-CCATGCATATCAAGTAAAATGTTGT
* *
29718128 CAAACGCCATGTATAACAAGTAAAATTC
64 CACACGCCATGCATAACAAGTAAAATTC
* * *
29718156 TGTGACACGACATGCATATCAAGTAAAATGCTGTGACACGCCATGCATATCAAGTAAAATGCTGT
1 TGTGACACGCCATGCAT-TCAAGTAAAATGTTGTGACAC-CCATGCATATCAAGTAAAATGTTGT
* * * *
29718221 CACGCGCTATGCATATCAAGTAAAATGC
64 CACACGCCATGCATAACAAGTAAAATTC
*
29718249 TGTCACAC
1 TGTGACAC
29718257 ACTAATAACT
Statistics
Matches: 161, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
92 5 0.03
93 152 0.94
94 4 0.02
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (91 bp):
TGTGACACGCCATGCATTCAAGTAAAATGTTGTGACACCCATGCATATCAAGTAAAATGTTGTCA
CACGCCATGCATAACAAGTAAAATTC
Found at i:29718862 original size:47 final size:47
Alignment explanation
Indices: 29718781--29719035 Score: 334
Period size: 47 Copynumber: 5.4 Consensus size: 47
29718771 CTAAACATGA
29718781 CCATGGCGTGTCACCAACTCTAAACTCT-AGCGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTAAACTCTGA-CGTGTCACAGATTCCCT
* * * * *
29718828 CTATGGCGTCTCACCAACTCTGAACGCTAACGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCT
* *
29718875 CCATGCCGTGTCACCAACTCTTAA-TCTGACGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCT
* * * * * * *
29718921 CAATGGCGTCTCACCAACTCTAAACGCTGTCATGTCACATATTCCCA
1 CCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCT
* *
29718968 CCATGGCGTGTCACCAACTCTAAACTCTGGCGTCTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCT
*
29719015 CCATGGCGTTTCACCAACTCT
1 CCATGGCGTGTCACCAACTCT
29719036 GAGCGGTGCC
Statistics
Matches: 178, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
46 40 0.22
47 137 0.77
48 1 0.01
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (47 bp):
CCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCT
Found at i:29718927 original size:93 final size:94
Alignment explanation
Indices: 29718780--29719037 Score: 376
Period size: 93 Copynumber: 2.8 Consensus size: 94
29718770 TCTAAACATG
*
29718780 ACCATGGCGTGTCACCAACTCTAAACTCT-AGCGTGTCACAGATTCCCTCTATGGCGTCTCACCA
1 ACCATGGCGTGTCACCAACTCTAAACTCTGA-CGTGTCACAGATTCCCTCAATGGCGTCTCACCA
*
29718844 ACTCTGAACGCTAACGTGTCACAGATTCCC
65 ACTCTGAACGCTAACATGTCACAGATTCCC
* * *
29718874 TCCATGCCGTGTCACCAACTCTTAA-TCTGACGTGTCACAGATTCCCTCAATGGCGTCTCACCAA
1 ACCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCTCAATGGCGTCTCACCAA
* ** *
29718938 CTCTAAACGCTGTCATGTCACATATTCCC
66 CTCTGAACGCTAACATGTCACAGATTCCC
* * * *
29718967 ACCATGGCGTGTCACCAACTCTAAACTCTGGCGTCTCACAGATTCCCTCCATGGCGTTTCACCAA
1 ACCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCTCAATGGCGTCTCACCAA
29719032 CTCTGA
66 CTCTGA
29719038 GCGGTGCCGT
Statistics
Matches: 145, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
93 82 0.57
94 63 0.43
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (94 bp):
ACCATGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCTCAATGGCGTCTCACCAA
CTCTGAACGCTAACATGTCACAGATTCCC
Found at i:29718987 original size:140 final size:140
Alignment explanation
Indices: 29718783--29719035 Score: 364
Period size: 140 Copynumber: 1.8 Consensus size: 140
29718773 AAACATGACC
* * * * *
29718783 ATGGCGTGTCACCAACTCTAAACTCTAGCGTGTCACAGATTCCCTCTATGGCGTCTCACCAACTC
1 ATGGCGTCTCACCAACTCTAAACGCTAGCATGTCACAGATTCCCACCATGGCGTCTCACCAACTC
* *
29718848 TGAACGCTAACGTGTCACAGATTCCCTCCATGCCGTGTCACCAACTCTTAATCTGACGTGTCACA
66 TAAACGCTAACGTCTCACAGATTCCCTCCATGCCGTGTCACCAACTCTTAATCTGACGTGTCACA
29718913 GATTCCCTCA
131 GATTCCCTCA
* *
29718923 ATGGCGTCTCACCAACTCTAAACGCT-GTCATGTCACATATTCCCACCATGGCGTGTCACCAACT
1 ATGGCGTCTCACCAACTCTAAACGCTAG-CATGTCACAGATTCCCACCATGGCGTCTCACCAACT
* ** * *
29718987 CTAAACTCTGGCGTCTCACAGATTCCCTCCATGGCGTTTCACCAACTCT
65 CTAAACGCTAACGTCTCACAGATTCCCTCCATGCCGTGTCACCAACTCT
29719036 GAGCGGTGCC
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
139 1 0.01
140 97 0.99
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.26
Consensus pattern (140 bp):
ATGGCGTCTCACCAACTCTAAACGCTAGCATGTCACAGATTCCCACCATGGCGTCTCACCAACTC
TAAACGCTAACGTCTCACAGATTCCCTCCATGCCGTGTCACCAACTCTTAATCTGACGTGTCACA
GATTCCCTCA
Found at i:29721389 original size:23 final size:24
Alignment explanation
Indices: 29721344--29721392 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
29721334 TCTAAATTAT
29721344 GTATATATTATATAGATAAATAAA
1 GTATATATTATATAGATAAATAAA
* *
29721368 GTATATA-TATATATATATATAAA
1 GTATATATTATATAGATAAATAAA
29721391 GT
1 GT
29721393 TAATCTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (24 bp):
GTATATATTATATAGATAAATAAA
Found at i:29739162 original size:70 final size:71
Alignment explanation
Indices: 29739069--29739208 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 71
29739059 AGAATAAAAT
*
29739069 TAATTATTAAATAAAAAATTATTTTGAAAGCCATT-AAAAATAAATATAATAAATAAAATTGTAT
1 TAATTATTAAATAAAAAATTATTTTGAAAGCCATTAAAAAATAAATACAATAAATAAAATTGTAT
29739133 TGAAAC
66 TGAAAC
* *
29739139 TAATTATTAAATAAAAAATTATTTTGAAAGTCATTAAAAAATATATACAATAAATAAAATTGTAT
1 TAATTATTAAATAAAAAATTATTTTGAAAGCCATTAAAAAATAAATACAATAAATAAAATTGTAT
29739204 TGAAA
66 TGAAA
29739209 GAAATATAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
70 34 0.52
71 32 0.48
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (71 bp):
TAATTATTAAATAAAAAATTATTTTGAAAGCCATTAAAAAATAAATACAATAAATAAAATTGTAT
TGAAAC
Found at i:29739803 original size:392 final size:393
Alignment explanation
Indices: 29739121--29739895 Score: 1281
Period size: 392 Copynumber: 2.0 Consensus size: 393
29739111 AATATAATAA
*
29739121 ATAAAATTGTATTGAAACTAATTATTAAATAAAAAATTATTTTGAAAGTCATTAAAAAATATATA
1 ATAAAATTGTATTGAAACTAATTATTAAATAAAAAATTATTTTGAAAGTCATTAAAAAATATACA
*
29739186 CAATAAATAAAATTGTATTGAAAGAAATATAATTATTTTATTCTATCAATTTATATGTATATCCT
66 CAATAAATAAAATTGTATTGAAAGAAATACAATTATTTTATTCTATCAATTTATATGTATATCCT
*
29739251 TGTTACTTAAAATTTGCAACATATATGCTAGAATGAATTGGTTATTCAGAATAAAAAAAATATTG
131 TGTTACTTAAAATTTGCAACATACATGCTAGAATGAATTGGTTATTCAGAATAAAAAAAATATTG
*
29739316 ATGAAATTCTAAGTAACAGTGCAACACTACAACTTATATTTGAAAATTACATAATAATTTATTTA
196 ATGAAATTCTAAGTAACAGTACAACACTACAACTTATATTTGAAAATTACATAATAATTTATTTA
* *
29739381 TTTTCAAAGATTAAAATCATAAAAAATAAAATCCACATAATAGAAAAAAGAAGAACATGACAAAT
261 TTTTCAAAGATTAAAATCATAAAAAATAAAATCCACATAATAGAAAAAAAAAAAACATGACAAAT
* * *
29739446 AAAAGATAAAATTTACATAT-GACATAAT-AAAAAAGGAAGAAAAAGAATATGATTGATAAATAA
326 AAAAAATAAAATTTACATATAAACATAATAAAAAAAAGAA-AAAAAGAATATGATTGATAAATAA
29739509 AATT
390 AATT
29739513 ATAAAATTGTATTGAAACTAATTATTAAATAAAAAAATTATTTTGAAAGTCATT-AAAAATATAC
1 ATAAAATTGTATTGAAACTAATTATTAAAT-AAAAAATTATTTTGAAAGTCATTAAAAAATATAC
**
29739577 ACAATAAATAAAATTGTATTGAAAGAAATACAATTATTTTATTCTATCAATTTATATGTATATTT
65 ACAATAAATAAAATTGTATTGAAAGAAATACAATTATTTTATTCTATCAATTTATATGTATATCC
* *
29739642 TTGTTACTTAAAATTTGTAACATACATGCTATAATGAATTGGTTATTCAGAATAAAAAAAATATT
130 TTGTTACTTAAAATTTGCAACATACATGCTAGAATGAATTGGTTATTCAGAATAAAAAAAATATT
* * * *
29739707 GATTAAATTCTAAGTAACAGTATAACACTACAACTAATATATTTGAGAATTATATAATAATTTAT
195 GATGAAATTCTAAGTAACAGTACAACACTACAACT--TATATTTGAAAATTACATAATAATTTAT
* * *
29739772 TTATTTTTAAA-ATT-AAATTATAAAAAATAAAATCTACATAATAGAAAAAAAAAAAACATGACA
258 TTATTTTCAAAGATTAAAATCATAAAAAATAAAATCCACATAATAGAAAAAAAAAAAACATGACA
* *
29739835 AGTAAAAAATAAAATTTATATATAAACATAATAAAAAAAAGAAAAAAAGAATATGATTGAT
323 AATAAAAAATAAAATTTACATATAAACATAATAAAAAAAAGAAAAAAAGAATATGATTGAT
29739896 GATTCATAAA
Statistics
Matches: 356, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
392 260 0.73
393 51 0.14
394 45 0.13
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.34
Consensus pattern (393 bp):
ATAAAATTGTATTGAAACTAATTATTAAATAAAAAATTATTTTGAAAGTCATTAAAAAATATACA
CAATAAATAAAATTGTATTGAAAGAAATACAATTATTTTATTCTATCAATTTATATGTATATCCT
TGTTACTTAAAATTTGCAACATACATGCTAGAATGAATTGGTTATTCAGAATAAAAAAAATATTG
ATGAAATTCTAAGTAACAGTACAACACTACAACTTATATTTGAAAATTACATAATAATTTATTTA
TTTTCAAAGATTAAAATCATAAAAAATAAAATCCACATAATAGAAAAAAAAAAAACATGACAAAT
AAAAAATAAAATTTACATATAAACATAATAAAAAAAAGAAAAAAAGAATATGATTGATAAATAAA
ATT
Found at i:29739965 original size:15 final size:15
Alignment explanation
Indices: 29739947--29740010 Score: 60
Period size: 17 Copynumber: 4.0 Consensus size: 15
29739937 AACATATGAG
29739947 TAAATAAAATATAAA
1 TAAATAAAATATAAA
29739962 TAAATAATAAATATAAAAA
1 TAAAT-A-AAATAT--AAA
29739981 TAAATAATAATATAAA
1 TAAATAA-AATATAAA
29739997 TTAAA-AAAAT-TAAA
1 -TAAATAAAATATAAA
29740011 AAGAACTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
14 4 0.09
15 8 0.19
16 6 0.14
17 11 0.26
18 6 0.14
19 8 0.19
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATAAAATATAAA
Found at i:29739983 original size:19 final size:19
Alignment explanation
Indices: 29739949--29739996 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
29739939 CATATGAGTA
*
29739949 AATAAA-ATATAAATAAAT
1 AATAAATATAAAAATAAAT
29739967 AATAAATATAAAAATAAAT
1 AATAAATATAAAAATAAAT
29739986 AAT-AATATAAA
1 AATAAATATAAA
29739997 TTAAAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
AATAAATATAAAAATAAAT
Found at i:29739994 original size:18 final size:18
Alignment explanation
Indices: 29739947--29739996 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 18
29739937 AACATATGAG
29739947 TAAATAA-AATAT--AAA
1 TAAATAATAATATAAAAA
29739962 TAAATAATAAATATAAAAA
1 TAAATAAT-AATATAAAAA
29739981 TAAATAATAATATAAA
1 TAAATAATAATATAAA
29739997 TTAAAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.23
17 5 0.16
18 8 0.26
19 11 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAATAATAATATAAAAA
Found at i:29740002 original size:22 final size:23
Alignment explanation
Indices: 29739947--29740003 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 23
29739937 AACATATGAG
29739947 TAAATAAAATATAAATAAATAATA
1 TAAATAAAA-ATAAATAAATAATA
29739971 -AATATAAAAATAAAT-AATAATA
1 TAA-ATAAAAATAAATAAATAATA
29739993 TAAATTAAAAA
1 TAAA-TAAAAA
29740004 AATTAAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 8 0.27
23 16 0.53
24 6 0.20
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAATAAAAATAAATAAATAATA
Found at i:29740064 original size:129 final size:130
Alignment explanation
Indices: 29739912--29740169 Score: 475
Period size: 130 Copynumber: 2.0 Consensus size: 130
29739902 TAAAAATTTG
29739912 TGAAAGAAAATCTATAGAAATTTAAAACATATGAGTAAATAAAATATAAATAAAT-AATAAATAT
1 TGAAAGAAAATCTATAGAAATTTAAAACATATGAGTAAATAAAATATAAATAAATAAATAAATAT
29739976 AAAAATAAATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTGAATAAAGCCTATAN
66 AAAAATAAATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTGAATAAAGCCTATA-
29740041 T
130 T
* *
29740042 TGAAA-AAAATTTATAGAGATTTAAAACATATGAGTAAATAAAATATAAATAAATAAATAAATAT
1 TGAAAGAAAATCTATAGAAATTTAAAACATATGAGTAAATAAAATATAAATAAATAAATAAATAT
29740106 AAAAATAAATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTGAATAAAGCCTATA
66 AAAAATAAATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTGAATAAAGCCTATA
29740170 AAGTTATTTT
Statistics
Matches: 125, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
129 47 0.38
130 78 0.62
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (130 bp):
TGAAAGAAAATCTATAGAAATTTAAAACATATGAGTAAATAAAATATAAATAAATAAATAAATAT
AAAAATAAATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTGAATAAAGCCTATAT
Found at i:29740093 original size:4 final size:4
Alignment explanation
Indices: 29740076--29740127 Score: 56
Period size: 4 Copynumber: 13.2 Consensus size: 4
29740066 AACATATGAG
*
29740076 TAAA TAAA -ATA TAAA TAAA TAAA TAAA TATAA -AAA TAAA T-AA TAATA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA TAAA TAAA TAA-A
29740123 TAAA T
1 TAAA T
29740128 TAAAAAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
3 7 0.17
4 28 0.68
5 6 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
TAAA
Found at i:29740103 original size:12 final size:11
Alignment explanation
Indices: 29740076--29740134 Score: 64
Period size: 12 Copynumber: 5.0 Consensus size: 11
29740066 AACATATGAG
*
29740076 TAAATAAAATA
1 TAAATAAAAAA
29740087 TAAATAAATAAA
1 TAAATAAA-AAA
29740099 TAAATATAAAAA
1 TAAATA-AAAAA
*
29740111 TAAATAATAATA
1 TAAATAA-AAAA
29740123 TAAATTAAAAAA
1 TAAA-TAAAAAA
29740135 ATTAAAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
11 9 0.22
12 27 0.66
13 5 0.12
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
TAAATAAAAAA
Found at i:29740113 original size:24 final size:24
Alignment explanation
Indices: 29740079--29740133 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
29740069 ATATGAGTAA
29740079 ATAAAATATAAATAAATAA-ATAAAT
1 ATAAAA-ATAAAT-AATAATATAAAT
29740104 ATAAAAATAAATAATAATATAAAT
1 ATAAAAATAAATAATAATATAAAT
29740128 -TAAAAA
1 ATAAAAA
29740134 AATTAAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.38
24 12 0.41
25 6 0.21
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (24 bp):
ATAAAAATAAATAATAATATAAAT
Found at i:29740127 original size:16 final size:16
Alignment explanation
Indices: 29740076--29740127 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 16
29740066 AACATATGAG
29740076 TAAATAA-AATATAAA
1 TAAATAATAATATAAA
29740091 TAAATAAATAAATATAAAAA
1 TAAAT-AAT-AATAT--AAA
29740111 TAAATAATAATATAAA
1 TAAATAATAATATAAA
29740127 T
1 T
29740128 TAAAAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
15 5 0.16
16 6 0.19
18 10 0.31
19 3 0.09
20 8 0.25
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAATAATAATATAAA
Found at i:29740161 original size:44 final size:43
Alignment explanation
Indices: 29739983--29740161 Score: 122
Period size: 44 Copynumber: 4.1 Consensus size: 43
29739973 TATAAAAATA
29739983 AATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTG
1 AATAATAATATAAATTAAAAAAATTAAAAAGAA-TTTAAAACTG
* * * *
29740027 AATAA-AGCCTAT-ANTTGAAAAAAATT-TATAGAGATTTAAAAC--
1 AATAATA--ATATAAATT-AAAAAAATTAAAAAGA-ATTTAAAACTG
* * * * * *
29740069 ATATGAGTAA-ATAAAATATAAATAAA-TAAATA-AATATAAAAATA
1 A-AT-AATAATAT-AAAT-TAAAAAAATTAAAAAGAATTTAAAACTG
29740113 AATAATAATATAAATTAAAAAAATTAAAAAGAACTTTAAAACTG
1 AATAATAATATAAATTAAAAAAATTAAAAAGAA-TTTAAAACTG
29740157 AATAA
1 AATAA
29740162 AGCCTATAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 34
0.66 0.11 0.22
Matches are distributed among these distances:
41 7 0.07
42 23 0.23
43 11 0.11
44 45 0.45
45 15 0.15
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (43 bp):
AATAATAATATAAATTAAAAAAATTAAAAAGAATTTAAAACTG
Found at i:29744757 original size:40 final size:39
Alignment explanation
Indices: 29744708--29744790 Score: 94
Period size: 40 Copynumber: 2.1 Consensus size: 39
29744698 ATTGAATAAT
* *
29744708 TTAAAATATTAATATTTTTAAAATAAATTTAAGTTAAATA
1 TTAAAATATTAATATTTTTAAAAT-AATCTAAATTAAATA
* ** **
29744748 TTAACATATTTTTATTTTTTTAATAATCTAAATTAAATA
1 TTAAAATATTAATATTTTTAAAATAATCTAAATTAAATA
29744787 TTAA
1 TTAA
29744791 TATTCATTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 17 0.47
40 19 0.53
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (39 bp):
TTAAAATATTAATATTTTTAAAATAATCTAAATTAAATA
Found at i:29757156 original size:2 final size:2
Alignment explanation
Indices: 29757145--29757184 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
29757135 AGCCATTTTG
* *
29757145 TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC CC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
29757185 TCCACTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
TC
Found at i:29760499 original size:22 final size:21
Alignment explanation
Indices: 29760448--29760499 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
29760438 AAAACCCTAG
**
29760448 GTGGAAAAATTCAAGGGAAAA
1 GTGGAAAAATTCAAGAAAAAA
29760469 GTGTG-AAAATTCAAGAAAACAA
1 GTG-GAAAAATTCAAGAAAA-AA
29760491 GTGGAAAAA
1 GTGGAAAAA
29760500 GATAAGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.54, C:0.06, G:0.25, T:0.15
Consensus pattern (21 bp):
GTGGAAAAATTCAAGAAAAAA
Found at i:29763020 original size:2 final size:2
Alignment explanation
Indices: 29763013--29763040 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
29763003 GTTGATGACG
29763013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29763041 TCACATGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29771325 original size:22 final size:22
Alignment explanation
Indices: 29771300--29771352 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
29771290 GAAAGAGAAG
*
29771300 AAGAGAGAAAAGAGGAAGTGGA
1 AAGAGAGAAAAGAGGAAGAGGA
* **
29771322 AAGAGACAAGCGAGGAAGAGGA
1 AAGAGAGAAAAGAGGAAGAGGA
*
29771344 TAGAGAGAA
1 AAGAGAGAA
29771353 GGTGAAGGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.53, C:0.04, G:0.40, T:0.04
Consensus pattern (22 bp):
AAGAGAGAAAAGAGGAAGAGGA
Found at i:29774283 original size:5 final size:5
Alignment explanation
Indices: 29774273--29774305 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
29774263 TTTCCATCGC
29774273 TTTCT TTTCT TTTCT TTTCT TTTCAT TTT-T TTT
1 TTTCT TTTCT TTTCT TTTCT TTTC-T TTTCT TTT
29774306 TGTTCCTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 19 0.70
6 4 0.15
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:29776365 original size:28 final size:28
Alignment explanation
Indices: 29776325--29776382 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
29776315 AGAAAGCATT
29776325 AGGATAGAGTAGCATCATAAACTTGTAC
1 AGGATAGAGTAGCATCATAAACTTGTAC
29776353 AGGATAGAGTAGCATCATAAACTTGTAC
1 AGGATAGAGTAGCATCATAAACTTGTAC
29776381 AG
1 AG
29776383 ATCTTCCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (28 bp):
AGGATAGAGTAGCATCATAAACTTGTAC
Found at i:29786544 original size:20 final size:20
Alignment explanation
Indices: 29786519--29786565 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
29786509 TTCATTAATC
29786519 GATAGATGGACTTATCTATT
1 GATAGATGGACTTATCTATT
29786539 GATAGATGGACTTATCTATT
1 GATAGATGGACTTATCTATT
29786559 GATAGAT
1 GATAGAT
29786566 TAGTGACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (20 bp):
GATAGATGGACTTATCTATT
Found at i:29793840 original size:4 final size:4
Alignment explanation
Indices: 29793831--29793855 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
29793821 CAATTTGAGG
29793831 TCCA TCCA TCCA TCCA TCCA TCCA T
1 TCCA TCCA TCCA TCCA TCCA TCCA T
29793856 TATTATCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.48, G:0.00, T:0.28
Consensus pattern (4 bp):
TCCA
Found at i:29799564 original size:22 final size:22
Alignment explanation
Indices: 29799525--29799586 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
29799515 CTATTGCATT
* ** *
29799525 ACTAATTTTTAGACATTGTGTC
1 ACTAGTTTTTAGGTATTGTGAC
*
29799547 ACTAGTTTTTAGGTATTGTGAG
1 ACTAGTTTTTAGGTATTGTGAC
29799569 ACT-GATTTTTAGGTATTG
1 ACTAG-TTTTTAGGTATTG
29799587 CATACTTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.03
22 33 0.97
ACGTcount: A:0.24, C:0.08, G:0.21, T:0.47
Consensus pattern (22 bp):
ACTAGTTTTTAGGTATTGTGAC
Found at i:29799644 original size:21 final size:21
Alignment explanation
Indices: 29799620--29799679 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
29799610 ATTTTTAAGT
29799620 ATTGCGTGATTAATTTTAGAC
1 ATTGCGTGATTAATTTTAGAC
** * *
29799641 ATTGCGCAATTAGTTTTTAGGC
1 ATTGCGTGATTA-ATTTTAGAC
* *
29799663 ATTGCATGATTGATTTT
1 ATTGCGTGATTAATTTT
29799680 TAGATAATGT
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (21 bp):
ATTGCGTGATTAATTTTAGAC
Found at i:29799811 original size:22 final size:22
Alignment explanation
Indices: 29799783--29799847 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
29799773 CATCTCCACC
29799783 AGTCACGTAATACT-TAAAAATT
1 AGTCACGTAAT-CTCTAAAAATT
*
29799805 AGTCACGTAATGTCTAAAAATT
1 AGTCACGTAATCTCTAAAAATT
* * *
29799827 AATCACGTAATGTCCAAAAAT
1 AGTCACGTAATCTCTAAAAAT
29799848 CGGTTATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
21 1 0.03
22 38 0.97
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (22 bp):
AGTCACGTAATCTCTAAAAATT
Found at i:29800072 original size:60 final size:60
Alignment explanation
Indices: 29799971--29800096 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
29799961 CCTGACGAAG
* *
29799971 AATGCACAAAATGATCAATGGTTTTTCTTCATGCATAAAAAA-TCACTCCAAAATACTTAAA
1 AATGCTCAAAACGATCAATGGTTTTTCTTCATGCATAAAAAACT-ACTCCAAAATAC-TAAA
* * ** * * *
29800032 AATGCTCAAAACGCTCAA-GGTTTTTCTTTATGTGTCAAAAACTACTCTAAAATACTCAA
1 AATGCTCAAAACGATCAATGGTTTTTCTTCATGCATAAAAAACTACTCCAAAATACTAAA
29800091 AATGCT
1 AATGCT
29800097 TAAATATTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
59 9 0.16
60 30 0.55
61 16 0.29
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (60 bp):
AATGCTCAAAACGATCAATGGTTTTTCTTCATGCATAAAAAACTACTCCAAAATACTAAA
Found at i:29803194 original size:2 final size:2
Alignment explanation
Indices: 29803187--29803218 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
29803177 AATCGAAGGC
29803187 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29803219 GTTAAGAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29804912 original size:2 final size:2
Alignment explanation
Indices: 29804905--29804934 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
29804895 AGAAAATGCA
*
29804905 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29804935 TAACTGAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29805455 original size:23 final size:23
Alignment explanation
Indices: 29805421--29805514 Score: 107
Period size: 23 Copynumber: 4.1 Consensus size: 23
29805411 GTTTAGAGTT
* *
29805421 TGTGAAACGGCATGTTGGGAATG
1 TGTGACACGGCATGGTGGGAATG
*
29805444 TGTGACATGGCATGGTGGGAATG
1 TGTGACACGGCATGGTGGGAATG
* * *
29805467 TGTGACACGCCATGGAGGGAATA
1 TGTGACACGGCATGGTGGGAATG
* * *
29805490 TGTGACACGGTAAGGTGAGAATG
1 TGTGACACGGCATGGTGGGAATG
29805513 TG
1 TG
29805515 ACACGACTCA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.27, C:0.11, G:0.39, T:0.23
Consensus pattern (23 bp):
TGTGACACGGCATGGTGGGAATG
Found at i:29805487 original size:46 final size:45
Alignment explanation
Indices: 29805437--29805565 Score: 129
Period size: 46 Copynumber: 2.8 Consensus size: 45
29805427 ACGGCATGTT
* *
29805437 GGGAATGTGTGACATGGCATGGTGGGAATGTGTGACACG-C-CATGGA
1 GGGAATATGTGACATGGCATGGTGAGAAT-TGTGACACGACTCA--GA
* * *
29805483 GGGAATATGTGACACGGTAAGGTGAGAA-TGTGACACGACTCAGA
1 GGGAATATGTGACATGGCATGGTGAGAATTGTGACACGACTCAGA
* * *
29805527 GGGAATATGCGAGATGACATGGTGAGAATATGTGACACG
1 GGGAATATGTGACATGGCATGGTGAGAAT-TGTGACACG
29805566 TCAATGTGAG
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
44 33 0.49
45 1 0.01
46 34 0.50
ACGTcount: A:0.30, C:0.12, G:0.37, T:0.20
Consensus pattern (45 bp):
GGGAATATGTGACATGGCATGGTGAGAATTGTGACACGACTCAGA
Found at i:29805602 original size:67 final size:67
Alignment explanation
Indices: 29805460--29805628 Score: 159
Period size: 67 Copynumber: 2.5 Consensus size: 67
29805450 ATGGCATGGT
* * * * *
29805460 GGGAATGTGTGACACGCCATGGAGGGAATATGTGACACGGTAAGGTGAGAATGTGACACGACTCA
1 GGGAATATGCGACACACCATGGTGAGAATATGTGACACGGTAAGGTGAGAATGTGACACGACTCA
29805525 GA
66 GA
* * * *
29805527 GGGAATATGCGAGATGA-CATGGTGAGAATATGTGACAC-GTCAATGTGAGAATGTGGCAC-AC-
1 GGGAATATGCGACA-CACCATGGTGAGAATATGTGACACGGT-AAGGTGAGAATGTGACACGACT
29805588 CATG-
64 CA-GA
* *
29805592 GTGTGCATATGTGACACACCATGGTGAGAATATGTGA
1 G-G-GAATATGCGACACACCATGGTGAGAATATGTGA
29805629 GATAGTATGA
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
65 3 0.04
66 7 0.08
67 73 0.88
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.21
Consensus pattern (67 bp):
GGGAATATGCGACACACCATGGTGAGAATATGTGACACGGTAAGGTGAGAATGTGACACGACTCA
GA
Found at i:29805624 original size:23 final size:23
Alignment explanation
Indices: 29805544--29805628 Score: 95
Period size: 23 Copynumber: 3.8 Consensus size: 23
29805534 TGCGAGATGA
*
29805544 CATGGTGAGAATATGTGACACGTC
1 CATGGTGAGAATATGTGACAC-AC
* *
29805568 AAT-GTGAG-A-ATGTGGCACAC
1 CATGGTGAGAATATGTGACACAC
* *
29805588 CATGGTGTGCATATGTGACACAC
1 CATGGTGAGAATATGTGACACAC
29805611 CATGGTGAGAATATGTGA
1 CATGGTGAGAATATGTGA
29805629 GATAGTATGA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
20 3 0.06
21 12 0.24
22 2 0.04
23 31 0.62
24 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (23 bp):
CATGGTGAGAATATGTGACACAC
Found at i:29805727 original size:47 final size:47
Alignment explanation
Indices: 29805658--29805807 Score: 169
Period size: 47 Copynumber: 3.2 Consensus size: 47
29805648 GTGACACGGT
*
29805658 TGTGACACAGC-AGGATTCAGAGTTTGTGACACGCCATGGAAGGAATC
1 TGTGACACGGCAAGG-TTCAGAGTTTGTGACACGCCATGGAAGGAATC
* * * *
29805705 TGTGACACGGCAAGGTTCAGAGTTTATAACATGCCATGGAGGGAATC
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAAGGAATC
* * * * * * *
29805752 TATGACATGGCAGGGTTCAGACTTTGTGAC-CGCCATAGAAAGAATA
1 TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAAGGAATC
29805798 TGTGACACGG
1 TGTGACACGG
29805808 TAGGGTTTAG
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
46 19 0.23
47 62 0.74
48 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (47 bp):
TGTGACACGGCAAGGTTCAGAGTTTGTGACACGCCATGGAAGGAATC
Found at i:29806464 original size:64 final size:65
Alignment explanation
Indices: 29806349--29806471 Score: 151
Period size: 64 Copynumber: 1.9 Consensus size: 65
29806339 GTGTCACGAC
* * * *
29806349 ATTGGTTATTTTAGGGCAGTTTATGTAATGAGTCAGTAATTACACTAATTGGTGTGTCACACGCT
1 ATTGGTTATTTTAGGCCAGTTCATGTAATGAGACAGTAATTACACTAATTGGCGTGTCACACGCT
* * * *
29806414 ATTGG-TATTTTAGGCCAGTTCGTGTAA-GAAGACAGTAATTATAGTGATTGGCGTGTCA
1 ATTGGTTATTTTAGGCCAGTTCATGTAATG-AGACAGTAATTACACTAATTGGCGTGTCA
29806472 GCGTTGGTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
63 1 0.02
64 43 0.88
65 5 0.10
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (65 bp):
ATTGGTTATTTTAGGCCAGTTCATGTAATGAGACAGTAATTACACTAATTGGCGTGTCACACGCT
Found at i:29806540 original size:31 final size:31
Alignment explanation
Indices: 29806498--29806672 Score: 251
Period size: 31 Copynumber: 5.6 Consensus size: 31
29806488 ACATTTTACA
* *
29806498 CATGACGTGTAACAACATTTTACGTGATATG
1 CATGGCGTGTAACAACATTTTACTTGATATG
* * *
29806529 CATGGCATGTAACAACAATTGACTTGATATG
1 CATGGCGTGTAACAACATTTTACTTGATATG
*
29806560 CATGGCGTGTAACAACATTTGACTTGATATG
1 CATGGCGTGTAACAACATTTTACTTGATATG
*
29806591 CATGGCGTGTAACAACATTTTACTAGATATG
1 CATGGCGTGTAACAACATTTTACTTGATATG
* *
29806622 CATGGCATGGAACAACATTTTACTTGATATG
1 CATGGCGTGTAACAACATTTTACTTGATATG
* *
29806653 CGTGGTGTGTAACAACATTT
1 CATGGCGTGTAACAACATTT
29806673 ATTTCTTTCT
Statistics
Matches: 128, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (31 bp):
CATGGCGTGTAACAACATTTTACTTGATATG
Found at i:29806611 original size:93 final size:93
Alignment explanation
Indices: 29806498--29806672 Score: 280
Period size: 93 Copynumber: 1.9 Consensus size: 93
29806488 ACATTTTACA
*
29806498 CATGACGTGTAACAACATTTTACGT-GATATGCATGGCATGTAACAACAATTGACTTGATATGCA
1 CATGACGTGTAACAACATTTTAC-TAGATATGCATGGCATGGAACAACAATTGACTTGATATGCA
29806562 TGGCGTGTAACAACATTTGACTTGATATG
65 TGGCGTGTAACAACATTTGACTTGATATG
* * * *
29806591 CATGGCGTGTAACAACATTTTACTAGATATGCATGGCATGGAACAACATTTTACTTGATATGCGT
1 CATGACGTGTAACAACATTTTACTAGATATGCATGGCATGGAACAACAATTGACTTGATATGCAT
*
29806656 GGTGTGTAACAACATTT
66 GGCGTGTAACAACATTT
29806673 ATTTCTTTCT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (93 bp):
CATGACGTGTAACAACATTTTACTAGATATGCATGGCATGGAACAACAATTGACTTGATATGCAT
GGCGTGTAACAACATTTGACTTGATATG
Done.