Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 91 of 93
Found at i:36240798 original size:23 final size:23
Alignment explanation
Indices: 36240767--36240812 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
36240757 TAGAATAACA
*
36240767 ATTCCTAATTCTATTAGGATAAG
1 ATTCCTAATTATATTAGGATAAG
*
36240790 ATTCTTAATTATATTAGGATAAG
1 ATTCCTAATTATATTAGGATAAG
36240813 GTTATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (23 bp):
ATTCCTAATTATATTAGGATAAG
Found at i:36253555 original size:15 final size:14
Alignment explanation
Indices: 36253535--36253566 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
36253525 TTAGTTCTGC
36253535 TTTCTTTCTTTTTCT
1 TTTCTTTCTTTTT-T
36253550 TTTCTTTCTTTTTT
1 TTTCTTTCTTTTTT
36253564 TTT
1 TTT
36253567 ATTTTTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTCTTTCTTTTTT
Found at i:36253558 original size:19 final size:19
Alignment explanation
Indices: 36253534--36253571 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36253524 ATTAGTTCTG
*
36253534 CTTTCTTTCTTTTTCTTTT
1 CTTTCTTTCTTTTTATTTT
*
36253553 CTTTCTTTTTTTTTATTTT
1 CTTTCTTTCTTTTTATTTT
36253572 TGACAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (19 bp):
CTTTCTTTCTTTTTATTTT
Found at i:36257876 original size:12 final size:12
Alignment explanation
Indices: 36257855--36257901 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
36257845 GATTTTTTTT
36257855 AAAA-TTAATAA
1 AAAATTTAATAA
36257866 AAAATTTAATAA
1 AAAATTTAATAA
*
36257878 AAATTATATAATAA
1 AAA--ATTTAATAA
36257892 TAAAATTTAA
1 -AAAATTTAA
36257902 AATTAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 4 0.13
12 10 0.33
13 5 0.17
14 8 0.27
15 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAAATTTAATAA
Found at i:36257894 original size:17 final size:17
Alignment explanation
Indices: 36257866--36257922 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 17
36257856 AAATTAATAA
36257866 AAAATTTAATAAAAATTAT
1 AAAA-TTAATAAAAATT-T
*
36257885 ATAA-TAAT-AAAATTT
1 AAAATTAATAAAAATTT
*
36257900 AAAATTAATAAAAA-GT
1 AAAATTAATAAAAATTT
36257916 AAAATTA
1 AAAATTA
36257923 TATTTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 4 0.12
16 18 0.55
17 8 0.24
19 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATTAATAAAAATTT
Found at i:36257898 original size:16 final size:16
Alignment explanation
Indices: 36257852--36257922 Score: 53
Period size: 16 Copynumber: 4.6 Consensus size: 16
36257842 CTTGATTTTT
36257852 TTTAAAATTAAT-AAA
1 TTTAAAATTAATAAAA
*
36257867 ---AAATTTAATAAAAA
1 TTTAAAATTAAT-AAAA
*
36257881 TTATATAA-TAATAAAA
1 TT-TAAAATTAATAAAA
36257897 TTTAAAATTAATAAAA
1 TTTAAAATTAATAAAA
**
36257913 AGTAAAATTA
1 TTTAAAATTA
36257923 TATTTTTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
12 8 0.19
14 3 0.07
15 4 0.09
16 22 0.51
17 4 0.09
18 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (16 bp):
TTTAAAATTAATAAAA
Found at i:36257903 original size:23 final size:23
Alignment explanation
Indices: 36257852--36257921 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
36257842 CTTGATTTTT
* **
36257852 TTTAAAATTAATAAAAAATTTAA
1 TTTAAAATTAATAAAAAGTAAAA
* *
36257875 -TAAAAATTATATAATAA-TAAAA
1 TTTAAAATTA-ATAAAAAGTAAAA
36257897 TTTAAAATTAATAAAAAGTAAAA
1 TTTAAAATTAATAAAAAGTAAAA
36257920 TT
1 TT
36257922 ATATTTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 17 0.45
23 21 0.55
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (23 bp):
TTTAAAATTAATAAAAAGTAAAA
Found at i:36258936 original size:213 final size:214
Alignment explanation
Indices: 36258524--36258955 Score: 742
Period size: 212 Copynumber: 2.0 Consensus size: 214
36258514 AAACGTTAAA
*
36258524 TTTCATCTATCACTGCGGGAATTAAAGAAAAACAGAAAAAGTAGGTTTGGGAACTTGTAATTGTG
1 TTTCATCTATCACTGCGGAAATTAAAGAAAAACAGAAAAAGTAGGTTTGGGAACTTGTAATTGTG
*
36258589 TTAGAATGATCTGAACATTTTATTGTGGAGTTTGGATACAAGGTTTCGACCTGAAGGAGACGAAT
66 TTAGAATGATCTGAACATTTTATTGTGGAGTTTGGATACAAGGTTCCGACCTGAAGGAGACGAAT
*
36258654 CTGATAAACAATTAATTTAGGACTTGTTCTTTCTCTGTTTTGGATACATTAGAAGAATTTATGTT
131 CTGATAAACAATTAATTTAGGACTTGTTCTTTCTCTGTTTTGGATACATTAGAAGAATTTATATT
36258719 TGCTTAAACATTTCTCAAT
196 TGCTTAAACATTTCTCAAT
*
36258738 TTTCATTTATCACTGCGGAAATTAAAG-AAAACAGAAAAAGTAGGTTT-GGAACTTGTAATTGTG
1 TTTCATCTATCACTGCGGAAATTAAAGAAAAACAGAAAAAGTAGGTTTGGGAACTTGTAATTGTG
* * **
36258801 TTCGAATGATCTGAACATTTTATTGTGGGGTTTGGATACAAGGTTCCGATGTGAAGGAGACGAAT
66 TTAGAATGATCTGAACATTTTATTGTGGAGTTTGGATACAAGGTTCCGACCTGAAGGAGACGAAT
* *
36258866 CTGATGAACAATTAATTTAGGAGCTTGTTCTTTCTCTGTTTTGGATACCTTAGAAGAATTTATAT
131 CTGATAAACAATTAATTTAGGA-CTTGTTCTTTCTCTGTTTTGGATACATTAGAAGAATTTATAT
*
36258931 TTGCTTAAACATTTCTTAAT
195 TTGCTTAAACATTTCTCAAT
36258951 TTTCA
1 TTTCA
36258956 GAAATGATGT
Statistics
Matches: 206, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
212 97 0.47
213 84 0.41
214 25 0.12
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (214 bp):
TTTCATCTATCACTGCGGAAATTAAAGAAAAACAGAAAAAGTAGGTTTGGGAACTTGTAATTGTG
TTAGAATGATCTGAACATTTTATTGTGGAGTTTGGATACAAGGTTCCGACCTGAAGGAGACGAAT
CTGATAAACAATTAATTTAGGACTTGTTCTTTCTCTGTTTTGGATACATTAGAAGAATTTATATT
TGCTTAAACATTTCTCAAT
Found at i:36285353 original size:16 final size:17
Alignment explanation
Indices: 36285332--36285371 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
36285322 ATATCTCTTT
36285332 AATAAATAAA-ATTAAA
1 AATAAATAAATATTAAA
*
36285348 AATAAA-AAATCTTAAA
1 AATAAATAAATATTAAA
36285364 AATAAATA
1 AATAAATA
36285372 TTCATAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 17 0.81
17 1 0.05
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (17 bp):
AATAAATAAATATTAAA
Found at i:36293934 original size:38 final size:38
Alignment explanation
Indices: 36293883--36293961 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
36293873 TGTTCCACAT
36293883 TGGGGTTTGCCATTGGTAGTCATGAAAAGCTGCTCCAA
1 TGGGGTTTGCCATTGGTAGTCATGAAAAGCTGCTCCAA
*
36293921 TGGGGTTTGCCATTGGTGGTCATGAAAAGCTGCTCCAA
1 TGGGGTTTGCCATTGGTAGTCATGAAAAGCTGCTCCAA
36293959 TGG
1 TGG
36293962 TGGGACAACA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.29
Consensus pattern (38 bp):
TGGGGTTTGCCATTGGTAGTCATGAAAAGCTGCTCCAA
Found at i:36296232 original size:33 final size:33
Alignment explanation
Indices: 36296190--36296279 Score: 180
Period size: 33 Copynumber: 2.7 Consensus size: 33
36296180 GCATGATAAA
36296190 ATATCATAATTGATTATGATATGATATGTTAAC
1 ATATCATAATTGATTATGATATGATATGTTAAC
36296223 ATATCATAATTGATTATGATATGATATGTTAAC
1 ATATCATAATTGATTATGATATGATATGTTAAC
36296256 ATATCATAATTGATTATGATATGA
1 ATATCATAATTGATTATGATATGA
36296280 CATATTAATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (33 bp):
ATATCATAATTGATTATGATATGATATGTTAAC
Found at i:36296637 original size:98 final size:97
Alignment explanation
Indices: 36296533--36296830 Score: 382
Period size: 98 Copynumber: 3.0 Consensus size: 97
36296523 GCATTATGCC
* * *
36296533 AAAACTAAATAAAACCAAAAAATGATGCTCATAT-AGTAAGTTATGATAAATTTTTAATGTACTT
1 AAAACTAAATAATACCAAAAGATGATG-TCATATCA-TAAGTTATGATAGATTTTTAATGTACTT
36296597 TTCATATCGTACGTGCAAATTTAAGTTCACGTTG
64 TTCATATCGTACGTGCAAATTTAAGTTCACGTTG
* * * * *
36296631 AAAACTAAATATTACCAAAAGATTATGTTCATATCACAAGTTATGGTAGATTTTTAATGTATTTT
1 AAAACTAAATAATACCAAAAGATGATG-TCATATCATAAGTTATGATAGATTTTTAATGTACTTT
*
36296696 TCATATCGTACGTGAAAATTTAAGTTCACGTTG
65 TCATATCGTACGTGCAAATTTAAGTTCACGTTG
* * * * * *
36296729 AAAATTGAATAATACCAAAAGATGGTGTCTATATCATAAATTATGATGGATTTTTAATATACTTT
1 AAAACTAAATAATACCAAAAGATGATGTC-ATATCATAAGTTATGATAGATTTTTAATGTACTTT
* * * *
36296794 TCATATCGTACATGCGAATTCAAGTTCATGTTG
65 TCATATCGTACGTGCAAATTTAAGTTCACGTTG
36296827 AAAA
1 AAAA
36296831 TTTTGAAAAC
Statistics
Matches: 172, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
97 2 0.01
98 169 0.98
99 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (97 bp):
AAAACTAAATAATACCAAAAGATGATGTCATATCATAAGTTATGATAGATTTTTAATGTACTTTT
CATATCGTACGTGCAAATTTAAGTTCACGTTG
Found at i:36328644 original size:18 final size:18
Alignment explanation
Indices: 36328609--36328647 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
36328599 ACTATCAAAA
* **
36328609 TTAATAAAATTATTTTTT
1 TTAAAAAAATTAAATTTT
36328627 TTAAAAAAATTAAATTTT
1 TTAAAAAAATTAAATTTT
36328645 TTA
1 TTA
36328648 CGAGAAACTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTAAAAAAATTAAATTTT
Found at i:36328935 original size:10 final size:9
Alignment explanation
Indices: 36328901--36328934 Score: 52
Period size: 10 Copynumber: 3.8 Consensus size: 9
36328891 ATTGATTGAG
36328901 AAACAAAC-
1 AAACAAACA
36328909 AAACAAACA
1 AAACAAACA
36328918 AAACAAAACA
1 AAAC-AAACA
36328928 AAACAAA
1 AAACAAA
36328935 AGACTTAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 7 0.29
10 9 0.38
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (9 bp):
AAACAAACA
Found at i:36330406 original size:17 final size:17
Alignment explanation
Indices: 36330359--36330415 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
36330349 AATTTTTTTT
*
36330359 ATTATGATTTAT-ATAAA
1 ATTAT-ATTTATAATATA
*
36330376 ATTTGATATATATAATATA
1 A-TT-ATATTTATAATATA
36330395 ATTATATTTATAATATCA
1 ATTATATTTATAATAT-A
36330413 ATT
1 ATT
36330416 TAATCATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 13 0.39
18 13 0.39
19 7 0.21
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (17 bp):
ATTATATTTATAATATA
Found at i:36330651 original size:17 final size:17
Alignment explanation
Indices: 36330631--36330669 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
36330621 AAAATTCAAA
36330631 ATTTTTCAAAA-ATAAAT
1 ATTTTT-AAAATATAAAT
36330648 ATTTTTAAAATTATAAAT
1 ATTTTTAAAA-TATAAAT
36330666 ATTT
1 ATTT
36330670 ATTTATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 6 0.30
18 10 0.50
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTTTAAAATATAAAT
Found at i:36330767 original size:2 final size:2
Alignment explanation
Indices: 36330760--36330786 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36330750 TATAAATCAT
36330760 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
36330787 TTTTAGTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36333567 original size:15 final size:17
Alignment explanation
Indices: 36333547--36333579 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
36333537 TTAGAAATTG
36333547 AAAG-AATTAAA-AAAA
1 AAAGAAATTAAATAAAA
36333562 AAAGAAATTAAATAAAA
1 AAAGAAATTAAATAAAA
36333579 A
1 A
36333580 TACCTGTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 7 0.44
17 5 0.31
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAGAAATTAAATAAAA
Found at i:36340796 original size:18 final size:19
Alignment explanation
Indices: 36340773--36340811 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
36340763 AGGTTGAGGC
36340773 TGGAGGC-TTTATGTTTAA
1 TGGAGGCATTTATGTTTAA
36340791 TGGAGGCATTTTATGTTTAA
1 TGGAGGCA-TTTATGTTTAA
36340811 T
1 T
36340812 TGGTCTTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.23, C:0.05, G:0.26, T:0.46
Consensus pattern (19 bp):
TGGAGGCATTTATGTTTAA
Found at i:36341955 original size:3 final size:3
Alignment explanation
Indices: 36341947--36341973 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
36341937 AGTTTCTTAC
36341947 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
36341974 AAAGCAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:36347779 original size:115 final size:115
Alignment explanation
Indices: 36347572--36347784 Score: 372
Period size: 115 Copynumber: 1.9 Consensus size: 115
36347562 TTGATCCTTG
*
36347572 TCTCAATGTTTATATGGTATTTGTTTATATGGAGTCCTTACCACACTCCTCTGTTTTGCCATGGA
1 TCTCAATGTTTATATGGTATTTGTTTATATGGAGTCCTTACCACACTCCTCTGTTTTGCCATGCA
*
36347637 AGCCGGAATGTTCAAGGGCAATTGTCTGTAATTTTGTTGGAGCATCCCTC
66 AGCCGGAATGTTCAAGGGCAATAGTCTGTAATTTTGTTGGAGCATCCCTC
* *
36347687 TCTCAATGTTTATATGGTATTTGTTTATATGGAGTCCTTATCACATTCCTCTGTTTTGCCATGCA
1 TCTCAATGTTTATATGGTATTTGTTTATATGGAGTCCTTACCACACTCCTCTGTTTTGCCATGCA
* *
36347752 AGCTGGAATGTTCAAGGGCAGTAGTCTGTAATT
66 AGCCGGAATGTTCAAGGGCAATAGTCTGTAATT
36347785 GCTTTGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
115 92 1.00
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (115 bp):
TCTCAATGTTTATATGGTATTTGTTTATATGGAGTCCTTACCACACTCCTCTGTTTTGCCATGCA
AGCCGGAATGTTCAAGGGCAATAGTCTGTAATTTTGTTGGAGCATCCCTC
Found at i:36352708 original size:2 final size:2
Alignment explanation
Indices: 36352701--36352730 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36352691 GAAACCTAAA
*
36352701 TC TC TC TC TC TC TC TC TC TC TC TC AC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
36352731 CCACTACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.03, C:0.50, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:36357059 original size:2 final size:2
Alignment explanation
Indices: 36357052--36357081 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36357042 ACACGAATTC
*
36357052 TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
36357082 GTCGGGGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.03, G:0.50, T:0.47
Consensus pattern (2 bp):
TG
Found at i:36357091 original size:1 final size:1
Alignment explanation
Indices: 36357085--36357119 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
36357075 GCGTGTGGTC
* *
36357085 GGGGGGGGGGGGGGGGGGGCGGGGAGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
36357120 TTTCATTGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.03, C:0.03, G:0.94, T:0.00
Consensus pattern (1 bp):
G
Found at i:36365143 original size:38 final size:37
Alignment explanation
Indices: 36365079--36365150 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 37
36365069 CCGGTCGAGT
36365079 TAATCGATTAAATCAAATTTATTTTTGAATTAATTAAA
1 TAATCGATTAAATCAAATTTATTTTTG-ATTAATTAAA
*
36365117 TAATCGAATT-AATCTAA-TTATCTTTTGATTAATT
1 TAATCG-ATTAAATCAAATTTAT-TTTTGATTAATT
36365151 CGGTTTCAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
37 11 0.35
38 17 0.55
39 3 0.10
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.47
Consensus pattern (37 bp):
TAATCGATTAAATCAAATTTATTTTTGATTAATTAAA
Found at i:36368556 original size:29 final size:30
Alignment explanation
Indices: 36368519--36368581 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
36368509 TGTTTTGAAT
*
36368519 ATGACGTGTAATAACAATA-TTTTTTCAAC
1 ATGACGTGTAACAACAATATTTTTTTCAAC
*
36368548 ATGATGTGTAACAACAATATTTTTTTTCAAC
1 ATGACGTGTAACAACAATA-TTTTTTTCAAC
36368579 ATG
1 ATG
36368582 TAACAACATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 17 0.57
31 13 0.43
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.40
Consensus pattern (30 bp):
ATGACGTGTAACAACAATATTTTTTTCAAC
Found at i:36368626 original size:24 final size:23
Alignment explanation
Indices: 36368586--36368636 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
36368576 AACATGTAAC
**
36368586 AACATTTTTTAATTATGGGGTGT
1 AACATTTTTTAATTATGACGTGT
36368609 AACATATTTTT-ATATATGACGTGT
1 AACAT-TTTTTAAT-TATGACGTGT
36368633 AACA
1 AACA
36368637 ATAGTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (23 bp):
AACATTTTTTAATTATGACGTGT
Found at i:36368658 original size:30 final size:30
Alignment explanation
Indices: 36368624--36368685 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
36368614 ATTTTTATAT
* *
36368624 ATGACGTGTAACAATAGTATTTTTTTCAAC
1 ATGACATGTAACAACAGTATTTTTTTCAAC
*
36368654 ATGACATGTAATAACAGTATTTTTTTCAAC
1 ATGACATGTAACAACAGTATTTTTTTCAAC
36368684 AT
1 AT
36368686 AGTAACAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40
Consensus pattern (30 bp):
ATGACATGTAACAACAGTATTTTTTTCAAC
Found at i:36382255 original size:25 final size:25
Alignment explanation
Indices: 36382221--36382276 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
36382211 GTTAAATATT
36382221 AGGAAAGACTACTAAATATCACAAG
1 AGGAAAGACTACTAAATATCACAAG
36382246 AGGAAAGACTACTAAATATCACAAG
1 AGGAAAGACTACTAAATATCACAAG
36382271 AGGAAA
1 AGGAAA
36382277 AAGAGGCAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.54, C:0.14, G:0.18, T:0.14
Consensus pattern (25 bp):
AGGAAAGACTACTAAATATCACAAG
Found at i:36401494 original size:23 final size:23
Alignment explanation
Indices: 36401450--36401493 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36401440 TAGTTTGCAT
36401450 GAAAAAAAAAAAAAACAGAAAAG
1 GAAAAAAAAAAAAAACAGAAAAG
* *
36401473 GAAAAAGAAAAAGAA-AGAAAA
1 GAAAAAAAAAAAAAACAGAAAA
36401494 ATTATTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (23 bp):
GAAAAAAAAAAAAAACAGAAAAG
Found at i:36412479 original size:21 final size:21
Alignment explanation
Indices: 36412455--36412496 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
36412445 ATTCCTCCAA
*
36412455 ATGGAATTCCCCAGTATGAAG
1 ATGGAATTCCCCAATATGAAG
36412476 ATGGAATTCCCCAATATGAAG
1 ATGGAATTCCCCAATATGAAG
36412497 GTACATCTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (21 bp):
ATGGAATTCCCCAATATGAAG
Found at i:36431998 original size:25 final size:25
Alignment explanation
Indices: 36431968--36432019 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
36431958 AGGTTAATCA
36431968 AATCAATTTAAAAAAATGCAAATAT
1 AATCAATTTAAAAAAATGCAAATAT
* *
36431993 AATCAATTTAAAATAATGCAAGTAT
1 AATCAATTTAAAAAAATGCAAATAT
36432018 AA
1 AA
36432020 AAAATACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.29
Consensus pattern (25 bp):
AATCAATTTAAAAAAATGCAAATAT
Found at i:36433290 original size:14 final size:16
Alignment explanation
Indices: 36433265--36433305 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
36433255 AAAGCAATTT
* *
36433265 TTAAATAGTTATT-TA
1 TTAAATATTTATTCAA
36433280 TTAAA-ATTTATTCAA
1 TTAAATATTTATTCAA
36433295 TTAAATATTTA
1 TTAAATATTTA
36433306 AAATAATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 6 0.27
15 11 0.50
16 5 0.23
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
TTAAATATTTATTCAA
Found at i:36452761 original size:19 final size:18
Alignment explanation
Indices: 36452734--36452769 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
36452724 CCCCTTCTAA
36452734 ATTTAAAAAATTTATAAAT
1 ATTTAAAAAATTT-TAAAT
*
36452753 ATTTTAAAAATTTTAAA
1 ATTTAAAAAATTTTAAA
36452770 CGAATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAAAAATTTTAAAT
Found at i:36455455 original size:20 final size:20
Alignment explanation
Indices: 36455430--36455470 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36455420 AAGTTTTCAT
36455430 AGGATAAGATGATGAAAATA
1 AGGATAAGATGATGAAAATA
36455450 AGGATAAGATGATGAAAATA
1 AGGATAAGATGATGAAAATA
36455470 A
1 A
36455471 AATAATCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (20 bp):
AGGATAAGATGATGAAAATA
Found at i:36455481 original size:19 final size:20
Alignment explanation
Indices: 36455433--36455475 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
36455423 TTTTCATAGG
*
36455433 ATAAGATGATGAAAATAAGG
1 ATAAGATGATGAAAATAAGA
36455453 ATAAGATGATGAAAATAA-A
1 ATAAGATGATGAAAATAAGA
36455472 ATAA
1 ATAA
36455476 TCTGATACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (20 bp):
ATAAGATGATGAAAATAAGA
Found at i:36460025 original size:23 final size:23
Alignment explanation
Indices: 36459981--36460025 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36459971 ATATATTAAT
* **
36459981 AATATTTAAATATTTTTTAAAAA
1 AATATTTAAATATTATCAAAAAA
36460004 AATATTTAAATATTATCAAAAA
1 AATATTTAAATATTATCAAAAA
36460026 GTAAATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AATATTTAAATATTATCAAAAAA
Found at i:36460040 original size:16 final size:16
Alignment explanation
Indices: 36460010--36460051 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
36460000 AAAAAATATT
* *
36460010 TAAATATTATCAAAAAG
1 TAAAT-TTATAAAAAAA
36460027 TAAATTTATAAAAAAA
1 TAAATTTATAAAAAAA
36460043 T-AATTTATA
1 TAAATTTATA
36460052 TATTAACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 8 0.35
16 10 0.43
17 5 0.22
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (16 bp):
TAAATTTATAAAAAAA
Found at i:36462900 original size:16 final size:15
Alignment explanation
Indices: 36462866--36462903 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
36462856 GGTATATATA
36462866 TTATAATTAATAATT
1 TTATAATTAATAATT
36462881 TTATAAGTT-ATAATTT
1 TTATAA-TTAATAA-TT
36462897 TTATAAT
1 TTATAAT
36462904 ATTAACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTATAATTAATAATT
Found at i:36471188 original size:11 final size:11
Alignment explanation
Indices: 36471174--36471242 Score: 57
Period size: 11 Copynumber: 7.0 Consensus size: 11
36471164 AATCATTTAA
36471174 AAATATATAAT
1 AAATATATAAT
36471185 -AA-ATA-AAT
1 AAATATATAAT
36471193 AAAT-T-TAA-
1 AAATATATAAT
36471201 AAA-AT-TAA-
1 AAATATATAAT
36471209 AATATATATAAT
1 AA-ATATATAAT
36471221 AAATATATAAT
1 AAATATATAAT
*
36471232 AAATAAATAAT
1 AAATATATAAT
36471243 TTTAAAATTT
Statistics
Matches: 49, Mismatches: 1, Indels: 16
0.74 0.02 0.24
Matches are distributed among these distances:
8 12 0.24
9 9 0.18
10 4 0.08
11 22 0.45
12 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATATATAAT
Found at i:36471212 original size:27 final size:28
Alignment explanation
Indices: 36471168--36471224 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
36471158 TGAAAAAATC
*
36471168 ATTTAAAAATATATAATAAATA-AATAA
1 ATTTAAAAATATAAAATAAATATAATAA
*
36471195 ATTTAAAAA-ATTAAAATATATATAATAA
1 ATTTAAAAATA-TAAAATAAATATAATAA
36471223 AT
1 AT
36471225 ATATAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.04
27 18 0.69
28 7 0.27
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
ATTTAAAAATATAAAATAAATATAATAA
Found at i:36471228 original size:15 final size:15
Alignment explanation
Indices: 36471174--36471240 Score: 66
Period size: 15 Copynumber: 4.3 Consensus size: 15
36471164 AATCATTTAA
36471174 AAATATATAATAAAT
1 AAATATATAATAAAT
* *
36471189 AAATAAATTTAAAAAATT
1 AAAT--ATATAATAAA-T
36471207 AAA-ATAT-ATATAAT
1 AAATATATAATA-AAT
36471221 AAATATATAATAAAT
1 AAATATATAATAAAT
36471236 AAATA
1 AAATA
36471241 ATTTTAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
14 6 0.14
15 21 0.50
16 3 0.07
17 8 0.19
18 4 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATATATAATAAAT
Found at i:36478440 original size:55 final size:54
Alignment explanation
Indices: 36478342--36478522 Score: 143
Period size: 55 Copynumber: 3.3 Consensus size: 54
36478332 TGAAGAGTTA
* *
36478342 TTTTAGCGTGTCACGGCTGTTAC-TGGAGTGTTGTCG-GCT-AACTAGTTATTTGGGT
1 TTTTAGCGTGTCACGGCTATT-CTTGGAGTGTCGT-GAG-TGAACTAGTT-TTTGGGT
* * * * * *
36478397 TGTTAGCGTGTCACGGCTATTCTTGGGGTGTGGTGAGTGAACTAAATGTATGGGT
1 TTTTAGCGTGTCACGGCTATTCTTGGAGTGTCGTGAGTGAACT-AGTTTTTGGGT
* * * * * * *
36478452 TTTTGGCGTGTCATGGCTGTTCTTGGAGTGTCGTGGGTTAATTGGTTTTTGGGAT
1 TTTTAGCGTGTCACGGCTATTCTTGGAGTGTCGTGAGTGAACTAGTTTTTGGG-T
*
36478507 TTTTAACGTGTCACGG
1 TTTTAGCGTGTCACGG
36478523 ATGTTGGTGT
Statistics
Matches: 98, Mismatches: 23, Indels: 10
0.75 0.18 0.08
Matches are distributed among these distances:
54 9 0.09
55 87 0.89
56 2 0.02
ACGTcount: A:0.14, C:0.12, G:0.34, T:0.40
Consensus pattern (54 bp):
TTTTAGCGTGTCACGGCTATTCTTGGAGTGTCGTGAGTGAACTAGTTTTTGGGT
Found at i:36478586 original size:23 final size:23
Alignment explanation
Indices: 36478556--36478639 Score: 96
Period size: 23 Copynumber: 3.7 Consensus size: 23
36478546 TTACAGTGAT
36478556 TGGCGTGTCACGATAATGATGCA
1 TGGCGTGTCACGATAATGATGCA
* * *
36478579 TGGTGTGTCACGACAGTGATGCA
1 TGGCGTGTCACGATAATGATGCA
* * *
36478602 TGGCGTGTAATGATACTGATGCA
1 TGGCGTGTCACGATAATGATGCA
* *
36478625 TGACGCGTCACGATA
1 TGGCGTGTCACGATA
36478640 TTTGACTTGA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (23 bp):
TGGCGTGTCACGATAATGATGCA
Found at i:36481774 original size:31 final size:30
Alignment explanation
Indices: 36481739--36482001 Score: 147
Period size: 31 Copynumber: 8.5 Consensus size: 30
36481729 CTGATTTTGA
*
36481739 TATGCATGTCATGTCACAGAATTTTACTTGT
1 TATGCATGTCGTGTCACA-AATTTTACTTGT
* * * * * *
36481770 TATGCATGGCCTGTGATAGCATTTTACTTGA
1 TATGCATGTCGTGTCACA-AATTTTACTTGT
* * *
36481801 TATGCATGGT-GTGTGACAGCATTTTACTTGA
1 TATGCAT-GTCGTGTCACA-AATTTTACTTGT
* * * *
36481832 TATGCATGGT-GTGTTATAACGTTTAACTTGT
1 TATGCAT-GTCGTGTCACAA-ATTTTACTTGT
* *
36481863 TATACATAG-CGTGTTAGCACAA-TTTACTTGT
1 TATGCAT-GTCGTGTCA-CA-AATTTTACTTGT
* *** *
36481894 TATGCATGACGTGTCATTTCATTTTTCTTGT
1 TATGCATGTCGTGTCA-CAAATTTTACTTGT
* * *
36481925 TATGCATGACGTGTCACAATATTTTATTTGA
1 TATGCATGTCGTGTCACAA-ATTTTACTTGT
* *
36481956 TATGCACGGCGTGTCACAACATTTTACTTGT
1 TATGCATGTCGTGTCACAA-ATTTTACTTGT
*
36481987 TATGCATGGCGTGTC
1 TATGCATGTCGTGTC
36482002 TCACATTTAT
Statistics
Matches: 185, Mismatches: 39, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
30 2 0.01
31 180 0.97
32 2 0.01
33 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (30 bp):
TATGCATGTCGTGTCACAAATTTTACTTGT
Found at i:36481825 original size:62 final size:62
Alignment explanation
Indices: 36481739--36482009 Score: 249
Period size: 62 Copynumber: 4.4 Consensus size: 62
36481729 CTGATTTTGA
* * * * * * * *
36481739 TATGCATGTCATGTCACAGAATTTTACTTGTTATGCATGGCCTGTGATAGCATTTTACTTGA
1 TATGCATGGCGTGTCACAGCATTTTACTTGATATGCATGGCGTGTCATAACATTTTACTTGT
* * * * * *
36481801 TATGCATGGTGTGTGACAGCATTTTACTTGATATGCATGGTGTGTTATAACGTTTAACTTGT
1 TATGCATGGCGTGTCACAGCATTTTACTTGATATGCATGGCGTGTCATAACATTTTACTTGT
* * * * * * ** *
36481863 TATACATAGCGTGTTAGCA-CAATTTACTTGTTATGCATGACGTGTCATTTCATTTTTCTTGT
1 TATGCATGGCGTGTCA-CAGCATTTTACTTGATATGCATGGCGTGTCATAACATTTTACTTGT
* ** * * *
36481925 TATGCATGACGTGTCACAATATTTTATTTGATATGCACGGCGTGTCACAACATTTTACTTGT
1 TATGCATGGCGTGTCACAGCATTTTACTTGATATGCATGGCGTGTCATAACATTTTACTTGT
*
36481987 TATGCATGGCGTGTCTCA-CATTT
1 TATGCATGGCGTGTCACAGCATTT
36482010 ATTCCTTATT
Statistics
Matches: 163, Mismatches: 44, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
61 6 0.04
62 155 0.95
63 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (62 bp):
TATGCATGGCGTGTCACAGCATTTTACTTGATATGCATGGCGTGTCATAACATTTTACTTGT
Found at i:36482535 original size:31 final size:31
Alignment explanation
Indices: 36482495--36482899 Score: 314
Period size: 31 Copynumber: 13.1 Consensus size: 31
36482485 TGTGAGACAT
*
36482495 GCCATGCATAACAAGTAAAATGTTGTGACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * * * * *
36482526 GCCGTGCATATCAAATAAAATATTATGACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* *** *
36482557 GCCATGCATAACAAGAAAAATGAAATGACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * *
36482588 GTCATGCATAACAAGTAAATTG-TGCTGACAC
1 GCCATGCATAACAAGTAAAATGTTG-TCACAC
* * * * *
36482619 GCTATGTATAACAAGTTAAACGTTGTCACGC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * *
36482650 ACCATGCATATCAAGTAAAATGCTGTCACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * * *
36482681 ACCATGCATATA-AAGTAAAATGCTGTCAAAG
1 GCCATGCATA-ACAAGTAAAATGTTGTCACAC
* * *
36482712 GCTATGCATAACAAGTAAAAT-TCTGTGACAT
1 GCCATGCATAACAAGTAAAATGT-TGTCACAC
* * * *
36482743 GACATGCATATCAAGTAAAATGTTATCACAA
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * *
36482774 GCCATGTATAACAAGTAAAAT-TCTGTGACAT
1 GCCATGCATAACAAGTAAAATGT-TGTCACAC
* * **
36482805 GACATGCATATCAAGTAAAATGCAGTCACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * * *
36482836 GTCATGCATATCAAGTAAAATGCTATCACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
* * *
36482867 GCTATGCATATCAAGTAAAATGCTGTCACAC
1 GCCATGCATAACAAGTAAAATGTTGTCACAC
36482898 GC
1 GC
36482900 TAATAACTAA
Statistics
Matches: 299, Mismatches: 67, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
30 2 0.01
31 294 0.98
32 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (31 bp):
GCCATGCATAACAAGTAAAATGTTGTCACAC
Found at i:36482889 original size:16 final size:16
Alignment explanation
Indices: 36482808--36482889 Score: 52
Period size: 16 Copynumber: 5.2 Consensus size: 16
36482798 GTGACATGAC
36482808 ATGCATATCAAGTAAA
1 ATGCATATCAAGTAAA
* *
36482824 ATGCAGTCA-CACGT--C
1 ATGCA-T-ATCAAGTAAA
36482839 ATGCATATCAAGTAAA
1 ATGCATATCAAGTAAA
36482855 ATGC-TATCACACGCT---
1 ATGCATATCA-A-G-TAAA
36482870 ATGCATATCAAGTAAA
1 ATGCATATCAAGTAAA
36482886 ATGC
1 ATGC
36482890 TGTCACACGC
Statistics
Matches: 50, Mismatches: 4, Indels: 24
0.64 0.05 0.31
Matches are distributed among these distances:
13 2 0.04
14 6 0.12
15 15 0.30
16 19 0.38
17 6 0.12
18 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (16 bp):
ATGCATATCAAGTAAA
Found at i:36483547 original size:47 final size:47
Alignment explanation
Indices: 36483474--36483775 Score: 295
Period size: 47 Copynumber: 6.4 Consensus size: 47
36483464 CTAAACATGA
* *
36483474 CCATGGCGTGTCACCAACTCTGAACTCTGGCTTGTCACAGATTCCAT
1 CCATGGCGTGTCACCAACTCTAAACTCTGGCGTGTCACAGATTCCAT
* * * * * * *
36483521 CCATGGTGTGTCACTAACTCTTAACTCTAGAGTCTCACAGATTCAAT
1 CCATGGCGTGTCACCAACTCTAAACTCTGGCGTGTCACAGATTCCAT
* * * *
36483568 CCATGGCGTCTCACCAACTCTGAAA-GCTGGCATGTCACAGATTCCTT
1 CCATGGCGTGTCACCAACTCT-AAACTCTGGCGTGTCACAGATTCCAT
* * * * * *
36483615 CAATGCCGTGTCACCAACTCTTAA-TTTGGAGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTAAACTCTGGCGTGTCACAGATTCCAT
* * * * * *
36483661 CCATGGCATCTCACCAACTCTAAACGCTGCCATGTCACACATTCTCA-
1 CCATGGCGTGTCACCAACTCTAAACTCTGGCGTGTCACAGATTC-CAT
* * *
36483708 CCATGGCATGTCACCAACTCTAAACTCTGGCGTATCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTAAACTCTGGCGTGTCACAGATTCCAT
* *
36483755 CTATGGCGTCTCACCAACTCT
1 CCATGGCGTGTCACCAACTCT
36483776 GAGCGGTGCA
Statistics
Matches: 201, Mismatches: 50, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
46 39 0.19
47 159 0.79
48 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (47 bp):
CCATGGCGTGTCACCAACTCTAAACTCTGGCGTGTCACAGATTCCAT
Found at i:36483588 original size:94 final size:94
Alignment explanation
Indices: 36483474--36483799 Score: 379
Period size: 94 Copynumber: 3.5 Consensus size: 94
36483464 CTAAACATGA
* * * * *
36483474 CCATGGCGTGTCACCAACTCTGAACTCTGGCTTGTCACAGATTCCATCCATGGTGTGTCACTAAC
1 CCATGGCGTCTCACCAACTCTGAACGCTGGCATGTCACAGATTCCATCCATGGCGTGTCACCAAC
* * **
36483539 TCTTAACTCTAGAGTCTCACAGATTCAAT
66 TCTTAACTCTGGAGTATCACAGATTCCCT
* * * *
36483568 CCATGGCGTCTCACCAACTCTGAAAGCTGGCATGTCACAGATTCCTTCAATGCCGTGTCACCAAC
1 CCATGGCGTCTCACCAACTCTGAACGCTGGCATGTCACAGATTCCATCCATGGCGTGTCACCAAC
* *
36483633 TCTTAA-TTTGGAGTGTCACAGATTCCCT
66 TCTTAACTCTGGAGTATCACAGATTCCCT
* * * * *
36483661 CCATGGCATCTCACCAACTCTAAACGCTGCCATGTCACACATTCTCA-CCATGGCATGTCACCAA
1 CCATGGCGTCTCACCAACTCTGAACGCTGGCATGTCACAGATTC-CATCCATGGCGTGTCACCAA
* *
36483725 CTCTAAACTCTGGCGTATCACAGATTCCCT
65 CTCTTAACTCTGGAGTATCACAGATTCCCT
* * * *
36483755 CTATGGCGTCTCACCAACTCTGAGCGGT-GCAGTGTCACATATTCC
1 CCATGGCGTCTCACCAACTCTGAACGCTGGCA-TGTCACAGATTCC
36483800 CAACATGACG
Statistics
Matches: 195, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
93 79 0.41
94 116 0.59
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (94 bp):
CCATGGCGTCTCACCAACTCTGAACGCTGGCATGTCACAGATTCCATCCATGGCGTGTCACCAAC
TCTTAACTCTGGAGTATCACAGATTCCCT
Found at i:36483793 original size:47 final size:47
Alignment explanation
Indices: 36483474--36483831 Score: 262
Period size: 47 Copynumber: 7.6 Consensus size: 47
36483464 CTAAACATGA
* * * *
36483474 CCATGGCGTGTCACCAACTCTGAACTCTGGC-TTGTCACAGATTCCAT
1 CCATGGCGTCTCACCAACTCTAAACTCT-GCAGTGTCACAGATTCCCT
* * * * * **
36483521 CCATGGTGTGTCACTAACTCTTAACTCTAG-AGTCTCACAGATTCAAT
1 CCATGGCGTCTCACCAACTCTAAACTCT-GCAGTGTCACAGATTCCCT
* *
36483568 CCATGGCGTCTCACCAACTCTGAAAGCT-GGCA-TGTCACAGATTCCTT
1 CCATGGCGTCTCACCAACTCT-AAA-CTCTGCAGTGTCACAGATTCCCT
* * * * * *
36483615 CAATGCCGTGTCACCAACTCTTAA-TTTGGAGTGTCACAGATTCCCT
1 CCATGGCGTCTCACCAACTCTAAACTCTGCAGTGTCACAGATTCCCT
* * * * *
36483661 CCATGGCATCTCACCAACTCTAAACGCTGCCA-TGTCACACATTCTCA
1 CCATGGCGTCTCACCAACTCTAAACTCTG-CAGTGTCACAGATTCCCT
* * *
36483708 CCATGGCATGTCACCAACTCTAAACTCTGGC-GTATCACAGATTCCCT
1 CCATGGCGTCTCACCAACTCTAAACTCT-GCAGTGTCACAGATTCCCT
* * * ** * *
36483755 CTATGGCGTCTCACCAACTCTGAGCGGTGCAGTGTCACATATTCCCA
1 CCATGGCGTCTCACCAACTCTAAACTCTGCAGTGTCACAGATTCCCT
* * * * *
36483802 ACATGACGTTTCACAAACTCTAAACCCTGC
1 CCATGGCGTCTCACCAACTCTAAACTCTGC
36483832 CCTGCGACAA
Statistics
Matches: 242, Mismatches: 58, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
44 1 0.00
45 2 0.01
46 37 0.15
47 195 0.81
48 5 0.02
49 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (47 bp):
CCATGGCGTCTCACCAACTCTAAACTCTGCAGTGTCACAGATTCCCT
Found at i:36486081 original size:21 final size:22
Alignment explanation
Indices: 36486055--36486107 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
36486045 TTTTTAATTC
36486055 AAATAAATCAACTATAAC-ATA-
1 AAATAAATCAA-TATAACAATAT
36486076 AAATAAAAT-AATATAACAATAT
1 AAAT-AAATCAATATAACAATAT
36486098 AATATAAATC
1 AA-ATAAATC
36486108 TAAATTAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 6 0.22
21 9 0.33
22 10 0.37
23 2 0.07
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATAAATCAATATAACAATAT
Found at i:36486317 original size:22 final size:22
Alignment explanation
Indices: 36486255--36486307 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
36486245 AATTGAAGTT
36486255 AAAGGAAGAAAGAACAAATGAG
1 AAAGGAAGAAAGAACAAATGAG
36486277 AAAGGAAGAAAGAACAAATGAG
1 AAAGGAAGAAAGAACAAATGAG
36486299 AAAGGAAGA
1 AAAGGAAGA
36486308 TTTTAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.64, C:0.04, G:0.28, T:0.04
Consensus pattern (22 bp):
AAAGGAAGAAAGAACAAATGAG
Found at i:36486520 original size:18 final size:18
Alignment explanation
Indices: 36486497--36486531 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
36486487 TGATAAGCTC
36486497 TTAAAAA-AATAATTTTTT
1 TTAAAAATAA-AATTTTTT
36486515 TTAAAAATAAAATTTTT
1 TTAAAAATAAAATTTTT
36486532 AAAAAAAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAAATAAAATTTTTT
Found at i:36487009 original size:8 final size:8
Alignment explanation
Indices: 36486996--36487021 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
36486986 TGATGAATTA
36486996 TTTTTTAT
1 TTTTTTAT
36487004 TTTTTTAT
1 TTTTTTAT
36487012 TTTTTTAT
1 TTTTTTAT
36487020 TT
1 TT
36487022 AATTAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTAT
Found at i:36487195 original size:19 final size:18
Alignment explanation
Indices: 36487168--36487203 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
36487158 CCCTTTCTAA
36487168 ATTTAAAAAATTTATAAAT
1 ATTTAAAAAATTT-TAAAT
*
36487187 ATTTTAAAAATTTTAAA
1 ATTTAAAAAATTTTAAA
36487204 CGCTTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAAAAATTTTAAAT
Found at i:36488513 original size:47 final size:47
Alignment explanation
Indices: 36488462--36488716 Score: 278
Period size: 47 Copynumber: 5.4 Consensus size: 47
36488452 GGCACCGCTC
* * *
36488462 AGAGTTGGTGAGACGCCATGGAGGGAATCTGTAAGACGCCAAAGTTA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAAAGTTA
* * * * *
36488509 AGAGTTGGTGACACGCCATGGTGGGAATGTGTGACACGGCAACGTTG
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAAAGTTA
*
36488556 AGAGTTGGTGAGACGCCATGGAGGGAATCTGTGACACGCCAAA-TTA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAAAGTTA
* * ** *
36488602 AGAGTTGGTGACACGACACGGAGGGAATCTGTGACACGCCAGCGTTC
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAAAGTTA
* * * ** * * ** * *
36488649 AGGGTTGGTGAGACTCCATGGATTGAATCTGTTAGACGTTAGAGTTC
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAAAGTTA
36488696 AGAGTTGGTGACACGCCATGG
1 AGAGTTGGTGACACGCCATGG
36488717 TTTGAAATAG
Statistics
Matches: 172, Mismatches: 35, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
46 40 0.23
47 132 0.77
ACGTcount: A:0.27, C:0.17, G:0.35, T:0.22
Consensus pattern (47 bp):
AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAAAGTTA
Found at i:36488544 original size:23 final size:22
Alignment explanation
Indices: 36488516--36488596 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
36488506 TTAAGAGTTG
36488516 GTGACACGCCATGGTGGGAATGT
1 GTGACACGCCATGGTGGGAAT-T
* * * * *
36488539 GTGACACGGCAACGTTGAGAGTT
1 GTGACAC-GCCATGGTGGGAATT
* *
36488562 GGTGAGACGCCATGGAGGGAATCT
1 -GTGACACGCCATGGTGGGAAT-T
36488586 GTGACACGCCA
1 GTGACACGCCA
36488597 AATTAAGAGT
Statistics
Matches: 42, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
23 26 0.62
24 16 0.38
ACGTcount: A:0.25, C:0.20, G:0.37, T:0.19
Consensus pattern (22 bp):
GTGACACGCCATGGTGGGAATT
Found at i:36488576 original size:94 final size:94
Alignment explanation
Indices: 36488415--36488717 Score: 365
Period size: 94 Copynumber: 3.2 Consensus size: 94
36488405 GGCAGGGTTT
* * * * * * * *
36488415 AGAGTTTGTGAAACGTCATGTTGAGAATGTGTGAGACGGCACCGCTCAGAGTTGGTGAGACGCCA
1 AGAGTTGGTGACACGCCATGGTGGGAATGTGTGACACGGCAACGTTCAGAGTTGGTGAGACGCCA
36488480 TGGAGGGAATCTGTAAGACGCCAAAGTTA
66 TGGAGGGAATCTGTAAGACGCCAAAGTTA
*
36488509 AGAGTTGGTGACACGCCATGGTGGGAATGTGTGACACGGCAACGTTGAGAGTTGGTGAGACGCCA
1 AGAGTTGGTGACACGCCATGGTGGGAATGTGTGACACGGCAACGTTCAGAGTTGGTGAGACGCCA
* *
36488574 TGGAGGGAATCTGTGACACGCCAAA-TTA
66 TGGAGGGAATCTGTAAGACGCCAAAGTTA
* * * * * * * *
36488602 AGAGTTGGTGACACGACACGGAGGGAATCTGTGACACGCCAGCGTTCAGGGTTGGTGAGACTCCA
1 AGAGTTGGTGACACGCCATGGTGGGAATGTGTGACACGGCAACGTTCAGAGTTGGTGAGACGCCA
** * ** * *
36488667 TGGATTGAATCTGTTAGACGTTAGAGTTC
66 TGGAGGGAATCTGTAAGACGCCAAAGTTA
36488696 AGAGTTGGTGACACGCCATGGT
1 AGAGTTGGTGACACGCCATGGT
36488718 TTGAAATAGA
Statistics
Matches: 177, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
93 77 0.44
94 100 0.56
ACGTcount: A:0.26, C:0.17, G:0.34, T:0.22
Consensus pattern (94 bp):
AGAGTTGGTGACACGCCATGGTGGGAATGTGTGACACGGCAACGTTCAGAGTTGGTGAGACGCCA
TGGAGGGAATCTGTAAGACGCCAAAGTTA
Found at i:36488658 original size:93 final size:94
Alignment explanation
Indices: 36488460--36488710 Score: 324
Period size: 93 Copynumber: 2.7 Consensus size: 94
36488450 ACGGCACCGC
* *
36488460 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTAAGACGCCAAAGTTAAGAGTTGGTGACACGC
1 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTAACACGCCAAAGTTAAGAGTTGGTGACACGA
* * * *
36488525 CATGGTGGGAATGTGTGACACGGCAACGT
66 CACGGAGGGAATCTGTGACACGCCAACGT
* *
36488554 TGAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGACACGCCAAA-TTAAGAGTTGGTGACACGA
1 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTAACACGCCAAAGTTAAGAGTTGGTGACACGA
*
36488618 CACGGAGGGAATCTGTGACACGCCAGCGT
66 CACGGAGGGAATCTGTGACACGCCAACGT
* * ** * * ** * *
36488647 TCAGGGTTGGTGAGACTCCATGGATTGAATCTGTTAGACGTTAGAGTTCAGAGTTGGTGACACG
1 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTAACACGCCAAAGTTAAGAGTTGGTGACACG
36488711 CCATGGTTTG
Statistics
Matches: 136, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
93 77 0.57
94 59 0.43
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.22
Consensus pattern (94 bp):
TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTAACACGCCAAAGTTAAGAGTTGGTGACACGA
CACGGAGGGAATCTGTGACACGCCAACGT
Found at i:36489215 original size:31 final size:30
Alignment explanation
Indices: 36489177--36489422 Score: 215
Period size: 31 Copynumber: 8.0 Consensus size: 30
36489167 AGTTATTAGC
36489177 GTGTGACAGCATTTTACTTGATATGCATAGT
1 GTGTGACAGCATTTTACTTGATATGCAT-GT
36489208 GTGTGACAGCATTTTACTTGATATGCATGT
1 GTGTGACAGCATTTTACTTGATATGCATGT
* ** * *
36489238 CGTGTCACAAAATTTAACTT-ATTATGCATGGC
1 -GTGTGACAGCATTTTACTTGA-TATGCAT-GT
* *
36489270 GTTTGACAGTATTTTACTTGATATGCATGT
1 GTGTGACAGCATTTTACTTGATATGCATGT
* * * *
36489300 CGTGTCATAGAATTTTACTTGATATGCATCT
1 -GTGTGACAGCATTTTACTTGATATGCATGT
* * * * *
36489331 CGTGTCATAGAATTTTACTTGTTATGCATGAC
1 -GTGTGACAGCATTTTACTTGATATGCATG-T
* * * *
36489363 GTTTGACAACATTTTACTTGTTATGCATGGC
1 GTGTGACAGCATTTTACTTGATATGCAT-GT
* *
36489394 GTTTGACAGCATTTTACTTGATATACATG
1 GTGTGACAGCATTTTACTTGATATGCATG
36489423 ACGTGTCATA
Statistics
Matches: 181, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
30 5 0.03
31 173 0.96
32 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.41
Consensus pattern (30 bp):
GTGTGACAGCATTTTACTTGATATGCATGT
Found at i:36489264 original size:62 final size:62
Alignment explanation
Indices: 36489187--36489563 Score: 310
Period size: 62 Copynumber: 6.1 Consensus size: 62
36489177 GTGTGACAGC
* * * *
36489187 ATTTTACTTGATATGCATAGTGTGTGACAGCATTTTACTTGATATGCATGTCGTGTCACAAA
1 ATTTAACTTGATATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGACGTGTCACAAA
* * * * *
36489249 ATTTAACTT-ATTATGCATGGCGTTTGACAGTATTTTACTTGATATGCATGTCGTGTCATAGA
1 ATTTAACTTGA-TATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGACGTGTCACAAA
* ** * * * * * * *
36489311 ATTTTACTTGATATGCATCTCGTGTCATAGAATTTTACTTGTTATGCATGACGTTTGACAAC
1 ATTTAACTTGATATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGACGTGTCACAAA
* * * * * *
36489373 ATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATACATGACGTGTCATAAC
1 ATTTAACTTGATATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGACGTGTCACAAA
* * * * * * * * * * *
36489435 CTTTAACTTGATATGCATGGCATGTCACAACGTTTAACTTGTTATGCATGGCGTATCATAAC
1 ATTTAACTTGATATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGACGTGTCACAAA
* * * * * * * *
36489497 ATTTTACTCGTTATACATGGCGTGTCACAACATTTTGA-TTGCA-ATGCATGGCGTGTCACAAC
1 ATTTAACTTGATATGCATGGCGTGTGACAGCATTTT-ACTTG-ATATGCATGACGTGTCACAAA
36489559 ATTTA
1 ATTTA
36489564 TTCTTTATTT
Statistics
Matches: 253, Mismatches: 58, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
61 1 0.00
62 250 0.99
63 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (62 bp):
ATTTAACTTGATATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGACGTGTCACAAA
Found at i:36489447 original size:31 final size:31
Alignment explanation
Indices: 36489217--36489563 Score: 173
Period size: 31 Copynumber: 11.2 Consensus size: 31
36489207 TGTGTGACAG
* * * *
36489217 CATTTTACTTGATATGCATGTCGTGTCACAA
1 CATTTAACTTGATATACATGGCGTGTCATAA
* * * * * *
36489248 AATTTAACTT-ATTATGCATGGCGTTTGACAG
1 CATTTAACTTGA-TATACATGGCGTGTCATAA
* * * *
36489279 TATTTTACTTGATATGCATGTCGTGTCATAGA
1 CATTTAACTTGATATACATGGCGTGTCATA-A
* * **
36489311 -ATTTTACTTGATATGCATCTCGTGTCATAGA
1 CATTTAACTTGATATACATGGCGTGTCATA-A
* * * * * * *
36489342 -ATTTTACTTGTTATGCATGACGTTTGACAA
1 CATTTAACTTGATATACATGGCGTGTCATAA
* * * * * * *
36489372 CATTTTACTTGTTATGCATGGCGTTTGACAG
1 CATTTAACTTGATATACATGGCGTGTCATAA
* *
36489403 CATTTTACTTGATATACATGACGTGTCATAA
1 CATTTAACTTGATATACATGGCGTGTCATAA
* * * *
36489434 CCTTTAACTTGATATGCATGGCATGTCACAA
1 CATTTAACTTGATATACATGGCGTGTCATAA
* * * *
36489465 CGTTTAACTTGTTATGCATGGCGTATCATAA
1 CATTTAACTTGATATACATGGCGTGTCATAA
* * * *
36489496 CATTTTACTCGTTATACATGGCGTGTCACAA
1 CATTTAACTTGATATACATGGCGTGTCATAA
* * *
36489527 CATTTTGA-TTGCA-ATGCATGGCGTGTCACAA
1 CA-TTTAACTTG-ATATACATGGCGTGTCATAA
36489558 CATTTA
1 CATTTA
36489564 TTCTTTATTT
Statistics
Matches: 259, Mismatches: 51, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
30 5 0.02
31 249 0.96
32 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (31 bp):
CATTTAACTTGATATACATGGCGTGTCATAA
Found at i:36489465 original size:93 final size:93
Alignment explanation
Indices: 36489175--36489562 Score: 361
Period size: 93 Copynumber: 4.2 Consensus size: 93
36489165 TTAGTTATTA
* * * * * *
36489175 GCGTGTGACAGCATTTTACTTGATATGCATAGTGTGTGACAGCATTTTACTTGATATGCATGTCG
1 GCGTGTCACAACATTTTACTTGATATGCATGGCGTGTCACAGCATTTTACTTGATATACATGTCG
*
36489240 TGTCACAAAATTTAACTT-ATTATGCATG
66 TGTCACAACATTTAACTTGA-TATGCATG
* * ** * * * * *
36489268 GCGTTTGACAGTATTTTACTTGATATGCATGTCGTGTCATAGAATTTTACTTGATATGCATCTCG
1 GCGTGTCACAACATTTTACTTGATATGCATGGCGTGTCACAGCATTTTACTTGATATACATGTCG
* * *
36489333 TGTCATAGA-ATTTTACTTGTTATGCATG
66 TGTCACA-ACATTTAACTTGATATGCATG
* * * * * * *
36489361 ACGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATACATGACG
1 GCGTGTCACAACATTTTACTTGATATGCATGGCGTGTCACAGCATTTTACTTGATATACATGTCG
* *
36489426 TGTCATAACCTTTAACTTGATATGCATG
66 TGTCACAACATTTAACTTGATATGCATG
* * * * * * * * * *
36489454 GCATGTCACAACGTTTAACTTGTTATGCATGGCGTATCATAACATTTTACTCGTTATACATGGCG
1 GCGTGTCACAACATTTTACTTGATATGCATGGCGTGTCACAGCATTTTACTTGATATACATGTCG
*
36489519 TGTCACAACATTTTGA-TTGCA-ATGCATG
66 TGTCACAACA-TTTAACTTG-ATATGCATG
36489547 GCGTGTCACAACATTT
1 GCGTGTCACAACATTT
36489563 ATTCTTTATT
Statistics
Matches: 245, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
92 1 0.00
93 238 0.97
94 6 0.02
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (93 bp):
GCGTGTCACAACATTTTACTTGATATGCATGGCGTGTCACAGCATTTTACTTGATATACATGTCG
TGTCACAACATTTAACTTGATATGCATG
Found at i:36491464 original size:156 final size:156
Alignment explanation
Indices: 36491180--36491570 Score: 507
Period size: 156 Copynumber: 2.5 Consensus size: 156
36491170 GTTTATAGAG
* * * * * *
36491180 TAACACAGTAATTTATGTAATTACAGTTTACGAAAACGAGGACAGGTCCTCAAGCACCAATCAGT
1 TAACACAGTTATATATGTAATTACAGTTTACGAAAGCGACGACAGGTCCTGAAGCACCGATCAGT
* * * * * * *
36491245 CCAGC-CCAATCGCAGACAGCTAACGAGCAGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGT
66 CCGGCTCC-ACCGCAAACAGCTAACGAACAGACGGTAAAGATATTAAAGTTGTAACAGTTAATGT
36491309 TCAACAATTCCAAACATGATTATTGAA
130 TCAACAATTCCAAACATGATTATTGAA
* * *
36491336 TAACACAGTTATATATGTAATTGCAGTTTACGGAAGCGATGACAGGTCCTGAAGCACCGATCAGT
1 TAACACAGTTATATATGTAATTACAGTTTACGAAAGCGACGACAGGTCCTGAAGCACCGATCAGT
* *
36491401 CCGGCTCCACCGCAAACTA-CTAATGAACCGACGGTAAAGATATTAAAGTTGTAACAGTTAATGT
66 CCGGCTCCACCGCAAAC-AGCTAACGAACAGACGGTAAAGATATTAAAGTTGTAACAGTTAATGT
* *
36491465 TCAACAATTTCATACATGATTATTGAA
130 TCAACAATTCCAAACATGATTATTGAA
* * * * * *
36491492 TAACACAGTTAAATATGTAATTACAGTATGCGAAAGTGACGACAGGTCTTGAAGCACCGATCGGT
1 TAACACAGTTATATATGTAATTACAGTTTACGAAAGCGACGACAGGTCCTGAAGCACCGATCAGT
*
36491557 CCGACTCCACCGCA
66 CCGGCTCCACCGCA
36491571 GATTGCTATT
Statistics
Matches: 204, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
156 201 0.99
157 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (156 bp):
TAACACAGTTATATATGTAATTACAGTTTACGAAAGCGACGACAGGTCCTGAAGCACCGATCAGT
CCGGCTCCACCGCAAACAGCTAACGAACAGACGGTAAAGATATTAAAGTTGTAACAGTTAATGTT
CAACAATTCCAAACATGATTATTGAA
Found at i:36491763 original size:93 final size:93
Alignment explanation
Indices: 36491666--36491907 Score: 267
Period size: 93 Copynumber: 2.6 Consensus size: 93
36491656 CCAAGTTTAT
* * * * *
36491666 CTTGTTATGCATGGCGTGTCA-GAACATTT-TGCTTGTTATCCTTGGCGTGTCACCA-AGTTTAT
1 CTTGTTATCCTTGGCGTGTCACCAA-ATTTAT-CTTGTTATCCATGGCGTGTCACAACAGTTTA-
* * *
36491728 CTTGTTATGCATGGCGTGTCA-GAACATTTTG
63 ATTGTTATGCATGACGTGTCACG-ACATTTTC
* * *
36491759 CTTGTTATCCTTGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATT
1 CTTGTTATCCTTGGCGTGTCACCAAATTTATCTTGTTATCCATGGCGTGTCACAACAGTTTAATT
*
36491824 GTTTTGCATGACGTGTCACGACATTTTC
66 GTTATGCATGACGTGTCACGACATTTTC
* * * * *
36491852 CTCGTTATCCTTGGCGTGTCACCAAGTTTATCTTGTTATGCATGACGTGTTACAAC
1 CTTGTTATCCTTGGCGTGTCACCAAATTTATCTTGTTATCCATGGCGTGTCACAAC
36491908 CTTTTATAAT
Statistics
Matches: 130, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
93 121 0.93
94 9 0.07
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (93 bp):
CTTGTTATCCTTGGCGTGTCACCAAATTTATCTTGTTATCCATGGCGTGTCACAACAGTTTAATT
GTTATGCATGACGTGTCACGACATTTTC
Found at i:36491842 original size:62 final size:62
Alignment explanation
Indices: 36491587--36491819 Score: 396
Period size: 62 Copynumber: 3.7 Consensus size: 62
36491577 TATTCATGGT
* * * *
36491587 GTGTCA-CAACGTTTGATTTTGATATGCATGGCGTGTCAAAACATTTTGCTTATTATCCTTGGC
1 GTGTCACCAA-GTTT-ATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
36491650 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
1 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
36491712 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
1 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
*
36491774 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTT
1 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTT
36491820 AATTGTTTTG
Statistics
Matches: 164, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
62 151 0.92
63 10 0.06
64 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (62 bp):
GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
Found at i:36491859 original size:62 final size:62
Alignment explanation
Indices: 36491587--36491901 Score: 332
Period size: 62 Copynumber: 5.1 Consensus size: 62
36491577 TATTCATGGT
* * * * * * *
36491587 GTGTCA-CAACGTTTGATTTTGATATGCATGGCGTGTCAAAACATTTTGCTTATTATCCTTGGC
1 GTGTCACCAA-GTTT-ATCTTGTTATGCATGGCGTGTCACAACATTTTACTTGTTATCCATGAC
* * * *
36491650 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
1 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTACTTGTTATCCATGAC
* * * *
36491712 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGC
1 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTACTTGTTATCCATGAC
* * *
36491774 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATGAC
1 GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTACTTGTTATCCATGAC
* * * * * * *
36491836 GTGTCACGACA-TTT-TCCTCGTTATCCTTGGCGTGTCACCA-AGTTTATCTTGTTATGCATGAC
1 GTGTCACCA-AGTTTAT-CTTGTTATGCATGGCGTGTCACAACATTTTA-CTTGTTATCCATGAC
36491898 GTGT
1 GTGT
36491902 TACAACCTTT
Statistics
Matches: 229, Mismatches: 19, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
61 6 0.03
62 209 0.91
63 11 0.05
64 3 0.01
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (62 bp):
GTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTACTTGTTATCCATGAC
Found at i:36491859 original size:124 final size:124
Alignment explanation
Indices: 36491609--36491872 Score: 379
Period size: 124 Copynumber: 2.1 Consensus size: 124
36491599 TTGATTTTGA
36491609 TATGCATGGCGTGTCAAAACATTTTGCTTATTATCCTTGGCGTGTCACCAAGTTTATCTTGTTAT
1 TATGCATGGCGTGTCAAAACATTTTGCTTATTATCCTTGGCGTGTCACCAAGTTTATCTTGTTAT
* ** * * *
36491674 GCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGCGTGTCACCAAGTTTATCTTGT
66 GCATGGCGTGTCACAACATTTTAATTGTTATCCATGACGTGTCACCAAGTTTATCTCGT
* *
36491733 TATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGCGTGTCACCAAGTTTATCTTGTTAT
1 TATGCATGGCGTGTCAAAACATTTTGCTTATTATCCTTGGCGTGTCACCAAGTTTATCTTGTTAT
* * *
36491798 GCATGGCGTGTCACAACATTTTAATTGTTTTGCATGACGTGTCACGACA-TTT-TCCTCGT
66 GCATGGCGTGTCACAACATTTTAATTGTTATCCATGACGTGTCACCA-AGTTTAT-CTCGT
* *
36491857 TATCCTTGGCGTGTCA
1 TATGCATGGCGTGTCA
36491873 CCAAGTTTAT
Statistics
Matches: 125, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
123 1 0.01
124 123 0.98
125 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (124 bp):
TATGCATGGCGTGTCAAAACATTTTGCTTATTATCCTTGGCGTGTCACCAAGTTTATCTTGTTAT
GCATGGCGTGTCACAACATTTTAATTGTTATCCATGACGTGTCACCAAGTTTATCTCGT
Found at i:36491890 original size:31 final size:31
Alignment explanation
Indices: 36491639--36491901 Score: 225
Period size: 31 Copynumber: 8.5 Consensus size: 31
36491629 ATTTTGCTTA
*
36491639 TTATCCTTGGCGTGTCACCAAGTTTATCTTG
1 TTATCCATGGCGTGTCACCAAGTTTATCTTG
* * *
36491670 TTATGCATGGCGTGTCA-GAACATTT-TGCTTG
1 TTATCCATGGCGTGTCACCAA-GTTTAT-CTTG
*
36491701 TTATCCTTGGCGTGTCACCAAGTTTATCTTG
1 TTATCCATGGCGTGTCACCAAGTTTATCTTG
* * *
36491732 TTATGCATGGCGTGTCA-GAACATTT-TGCTTG
1 TTATCCATGGCGTGTCACCAA-GTTTAT-CTTG
*
36491763 TTATCCTTGGCGTGTCACCAAGTTTATCTTG
1 TTATCCATGGCGTGTCACCAAGTTTATCTTG
* * * *
36491794 TTATGCATGGCGTGTCACAACATTTTA-ATTG
1 TTATCCATGGCGTGTCACCA-AGTTTATCTTG
* * * * *
36491825 TTTTGCATGACGTGTCACGACA-TTT-TCCTCG
1 TTATCCATGGCGTGTCACCA-AGTTTAT-CTTG
*
36491856 TTATCCTTGGCGTGTCACCAAGTTTATCTTG
1 TTATCCATGGCGTGTCACCAAGTTTATCTTG
* *
36491887 TTATGCATGACGTGT
1 TTATCCATGGCGTGT
36491902 TACAACCTTT
Statistics
Matches: 184, Mismatches: 35, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
30 10 0.05
31 162 0.88
32 12 0.07
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.40
Consensus pattern (31 bp):
TTATCCATGGCGTGTCACCAAGTTTATCTTG
Found at i:36491913 original size:93 final size:93
Alignment explanation
Indices: 36491729--36491913 Score: 291
Period size: 93 Copynumber: 2.0 Consensus size: 93
36491719 CAAGTTTATC
* * *
36491729 TTGTTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCTTGGCGTGTCACCAAGTTTATCTTG
1 TTGTTATGCATGACGTGTCAGAACATTTTCCTCGTTATCCTTGGCGTGTCACCAAGTTTATCTTG
*
36491794 TTATGCATGGCGTGTCACAACATTTTAA
66 TTATGCATGACGTGTCACAACATTTTAA
*
36491822 TTGTTTTGCATGACGTGTCACG-ACATTTTCCTCGTTATCCTTGGCGTGTCACCAAGTTTATCTT
1 TTGTTATGCATGACGTGTCA-GAACATTTTCCTCGTTATCCTTGGCGTGTCACCAAGTTTATCTT
* *
36491886 GTTATGCATGACGTGTTACAACCTTTTA
65 GTTATGCATGACGTGTCACAACATTTTA
36491914 TAATTTATGG
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
93 83 0.99
94 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (93 bp):
TTGTTATGCATGACGTGTCAGAACATTTTCCTCGTTATCCTTGGCGTGTCACCAAGTTTATCTTG
TTATGCATGACGTGTCACAACATTTTAA
Found at i:36493441 original size:16 final size:16
Alignment explanation
Indices: 36493399--36493446 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
36493389 ATTTTTTTAT
* *
36493399 ACAATTCATTTTATAC
1 ACAATTTATTGTATAC
*
36493415 AC-ATTTTTTGTATAC
1 ACAATTTATTGTATAC
36493430 ACAATTTATTGTATAC
1 ACAATTTATTGTATAC
36493446 A
1 A
36493447 ATTCATTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (16 bp):
ACAATTTATTGTATAC
Found at i:36493454 original size:14 final size:14
Alignment explanation
Indices: 36493396--36493461 Score: 60
Period size: 14 Copynumber: 4.5 Consensus size: 14
36493386 TAAATTTTTT
*
36493396 TATACAATTCATTT
1 TATACAATTCATTG
**
36493410 TATACACATTTTTTG
1 TATACA-ATTCATTG
*
36493425 TATACACAATTTATTG
1 TAT--ACAATTCATTG
36493441 TATACAATTCATTG
1 TATACAATTCATTG
*
36493455 TAAACAA
1 TATACAA
36493462 ATATAATCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 22 0.51
15 8 0.19
16 10 0.23
17 3 0.07
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.44
Consensus pattern (14 bp):
TATACAATTCATTG
Found at i:36494349 original size:93 final size:93
Alignment explanation
Indices: 36494120--36494513 Score: 387
Period size: 93 Copynumber: 4.2 Consensus size: 93
36494110 ACACACCAGA
* * * * ** * * * * * *
36494120 ACTTGTTATGCATGACGGGTCAGAACAATTTAATTGTTATGCATGGCGTGTTATAACA-TTTAAC
1 ACTTGTTATGCATGGCGTGTCAAAACATTTTGCTCGTTATCCTTGGCGTGTCACAA-AGTTTATC
*
36494184 TTGTTATGCATGGCATGTCACAACCTTTTT
65 TTGTTATGCATGGCATGTCACAA-CATTTT
* * * * *
36494214 ACTTGTTATGCATGGCGTGTCAGAACATGTTGTTCATTATCCTTGGCGTGTCACTAAGTTTATCT
1 ACTTGTTATGCATGGCGTGTCAAAACATTTTGCTCGTTATCCTTGGCGTGTCACAAAGTTTATCT
* *
36494279 TGTTATGCATGGCGTGTCACAACCTTTT
66 TGTTATGCATGGCATGTCACAACATTTT
* * *
36494307 ACTTGTTATGCATGGTGTGTCAAAACATTTTGCTCGTTATCCTTGACGTGTCACCAAGTTTATCT
1 ACTTGTTATGCATGGCGTGTCAAAACATTTTGCTCGTTATCCTTGGCGTGTCACAAAGTTTATCT
36494372 TGTTATGCATGGCATGTCACAACATTTT
66 TGTTATGCATGGCATGTCACAACATTTT
*** * * *** * * *
36494400 ACTTGTTATGCATGGCGTGTCATTTCATTTTTCTTGTTATAAATGGCGTATTACAATATTTTAT-
1 ACTTGTTATGCATGGCGTGTCAAAACATTTTGCTCGTTATCCTTGGCGTGTCACAA-AGTTTATC
* * ***
36494464 TTGATATGCACGATGTGTCACAACATTTT
65 TTGTTATGCATGGCATGTCACAACATTTT
*
36494493 ACTTGTTATGCATGACGTGTC
1 ACTTGTTATGCATGGCGTGTC
36494514 TCACATTTAT
Statistics
Matches: 253, Mismatches: 45, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
93 177 0.70
94 76 0.30
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (93 bp):
ACTTGTTATGCATGGCGTGTCAAAACATTTTGCTCGTTATCCTTGGCGTGTCACAAAGTTTATCT
TGTTATGCATGGCATGTCACAACATTTT
Found at i:36494429 original size:31 final size:30
Alignment explanation
Indices: 36494120--36494513 Score: 272
Period size: 31 Copynumber: 12.7 Consensus size: 30
36494110 ACACACCAGA
* * *
36494120 ACTTGTTATGCATGACGGGTCAGAACAATTT
1 ACTTGTTATGCATGGCGTGTCA-AACATTTT
* * *
36494151 AATTGTTATGCATGGCGTGTTATAACATTTA
1 ACTTGTTATGCATGGCGTGTCA-AACATTTT
* *
36494182 ACTTGTTATGCATGGCATGTCACAACCTTTTT
1 ACTTGTTATGCATGGCGTGTCA-AA-CATTTT
*
36494214 ACTTGTTATGCATGGCGTGTCAGAACATGTT
1 ACTTGTTATGCATGGCGTGTCA-AACATTTT
* * * * * *
36494245 -GTTCATTATCCTTGGCGTGTCACTA-AGTTT
1 ACTT-GTTATGCATGGCGTGTCA-AACATTTT
*
36494275 ATCTTGTTATGCATGGCGTGTCACAACCTTTT
1 A-CTTGTTATGCATGGCGTGTCA-AACATTTT
*
36494307 ACTTGTTATGCATGGTGTGTCAAAACATTTT
1 ACTTGTTATGCATGGCGTGTC-AAACATTTT
* * * * * * *
36494338 GCTCGTTATCCTTGACGTGTC-ACCAAGTTT
1 ACTTGTTATGCATGGCGTGTCAAAC-ATTTT
*
36494368 ATCTTGTTATGCATGGCATGTCACAACATTTT
1 A-CTTGTTATGCATGGCGTGTCA-AACATTTT
**
36494400 ACTTGTTATGCATGGCGTGTCATTTCATTTT
1 ACTTGTTATGCATGGCGTGTCA-AACATTTT
* ** * * *
36494431 TCTTGTTATAAATGGCGTATTACAATATTTT
1 ACTTGTTATGCATGGCGTGTCA-AACATTTT
* * * **
36494462 ATTTGATATGCACGATGTGTCACAACATTTT
1 ACTTGTTATGCATGGCGTGTCA-AACATTTT
*
36494493 ACTTGTTATGCATGACGTGTC
1 ACTTGTTATGCATGGCGTGTC
36494514 TCACATTTAT
Statistics
Matches: 275, Mismatches: 78, Indels: 20
0.74 0.21 0.05
Matches are distributed among these distances:
29 2 0.01
30 9 0.03
31 223 0.81
32 39 0.14
33 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (30 bp):
ACTTGTTATGCATGGCGTGTCAAACATTTT
Found at i:36498033 original size:31 final size:31
Alignment explanation
Indices: 36497991--36498069 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
36497981 TTATCAGTCG
*
36497991 TGTTGTTACACGCCATGCAAAT-AACGTAAAA
1 TGTTGTAACACGCCATGCAAATCAA-GTAAAA
* *
36498022 TGTTGTAACACGCCATGCATATCAAGTCAAA
1 TGTTGTAACACGCCATGCAAATCAAGTAAAA
* *
36498053 TGTCGTGACACGCCATG
1 TGTTGTAACACGCCATG
36498070 AATCAGTATC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 40 0.95
32 2 0.05
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (31 bp):
TGTTGTAACACGCCATGCAAATCAAGTAAAA
Found at i:36498218 original size:55 final size:54
Alignment explanation
Indices: 36498142--36498321 Score: 182
Period size: 55 Copynumber: 3.3 Consensus size: 54
36498132 TGGTTACACC
* * * *
36498142 AACATCCGTAACACGTTAAAAACCTAAAAAACCAGTTAACCCACGACACACCAGG
1 AACAACCGTGACACGTCAAAAACCTAAAAAACCAGTTAACCCACAACAC-CCAGG
* * ** * *
36498197 AACAACCATGACACGTCAAAAACCTATAAATTCAGTTAACCCACCACACCCTAAG
1 AACAACCGTGACACGTCAAAAACCTAAAAAACCAGTTAACCCACAACACCC-AGG
* * * * *
36498252 AACAACCGTGACACG-CTAACAACCCAAATAACTAGTTAACCCACAACACGCCAGT
1 AACAACCGTGACACGTC-AAAAACCTAAAAAACCAGTTAACCCACAACAC-CCAGG
36498307 AACAACCGTGACACG
1 AACAACCGTGACACG
36498322 CTAAAATAAC
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
54 3 0.03
55 97 0.95
56 2 0.02
ACGTcount: A:0.43, C:0.33, G:0.11, T:0.13
Consensus pattern (54 bp):
AACAACCGTGACACGTCAAAAACCTAAAAAACCAGTTAACCCACAACACCCAGG
Found at i:36500898 original size:19 final size:20
Alignment explanation
Indices: 36500849--36500898 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
36500839 GTTTTCATAG
*
36500849 GATAAGATGATGAAAATAAA
1 GATAATATGATGAAAATAAA
36500869 GATAATATGATGAAAATAAA
1 GATAATATGATGAAAATAAA
*
36500889 -ATAATCTGAT
1 GATAATATGAT
36500899 ACAAGTATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.56, C:0.02, G:0.16, T:0.26
Consensus pattern (20 bp):
GATAATATGATGAAAATAAA
Found at i:36501901 original size:24 final size:24
Alignment explanation
Indices: 36501851--36501901 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
36501841 GTTACACGCT
* * *
36501851 ATGTACAAAAATCTATGACACGTC
1 ATGTACAAAAACCTATGACAAGCC
* *
36501875 ATGTACAAAAACCTGTGATAAGCC
1 ATGTACAAAAACCTATGACAAGCC
36501899 ATG
1 ATG
36501902 GTTAGCGTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
ATGTACAAAAACCTATGACAAGCC
Found at i:36501905 original size:69 final size:68
Alignment explanation
Indices: 36501808--36501997 Score: 220
Period size: 69 Copynumber: 2.8 Consensus size: 68
36501798 GATGTTACAC
* * * * *
36501808 GTACAAAAATCTATAACAAGCCATGGTTAGCATGTTACACGCTATGTACAAAAATC-TATGACAC
1 GTACAAAAACCTGTGACAAGCCATGGTTAGCATGTGACACGCCATGTACAAAAA-CATATGACAC
*
36501872 GTCAT
65 -ACAT
* * *
36501877 GTACAAAAACCTGTGATAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACATGTGACACA
1 GTACAAAAACCTGTGACAAGCCATGGTTAGCATGTGACACGCCATGTACAAAAACATATGACACA
*
36501942 CTT
66 CAT
* * * * *
36501945 GTACAAAAACCTGTGACAAGTCATGATTAGCGTGTGAAATGCCATGTACAAAA
1 GTACAAAAACCTGTGACAAGCCATGGTTAGCATGTGACACGCCATGTACAAAA
36501998 GCCTGTGACA
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
68 51 0.49
69 54 0.51
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (68 bp):
GTACAAAAACCTGTGACAAGCCATGGTTAGCATGTGACACGCCATGTACAAAAACATATGACACA
CAT
Found at i:36501938 original size:24 final size:23
Alignment explanation
Indices: 36501909--36501962 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
36501899 ATGGTTAGCG
*
36501909 TGTGACACGCCATGTACAAAAACA
1 TGTGACAC-ACATGTACAAAAACA
* *
36501933 TGTGACACACTTGTACAAAAACC
1 TGTGACACACATGTACAAAAACA
36501956 TGTGACA
1 TGTGACA
36501963 AGTCATGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (23 bp):
TGTGACACACATGTACAAAAACA
Found at i:36501976 original size:68 final size:68
Alignment explanation
Indices: 36501808--36502007 Score: 231
Period size: 68 Copynumber: 2.9 Consensus size: 68
36501798 GATGTTACAC
* * * * * * *
36501808 GTACAAAAATCTATAACAAGCCATGGTTAGCATGTTACACGCTATGTACAAAAATCTATGACACG
1 GTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAA-CTGTGACACG
*
36501873 TCAT
65 ACAT
*
36501877 GTACAAAAACCTGTGATAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACATGTGACAC-
1 GTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAAC-TGTGACACG
*
36501941 ACTT
65 ACAT
* * * * *
36501945 GTACAAAAACCTGTGACAAGTCATGATTAGCGTGTGAAATGCCATGTACAAAAGCCTGTGACA
1 GTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAA-ACTGTGACA
36502008 AGCCATGGTT
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
68 58 0.51
69 55 0.49
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (68 bp):
GTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACTGTGACACGA
CAT
Found at i:36501995 original size:45 final size:45
Alignment explanation
Indices: 36501944--36502095 Score: 205
Period size: 45 Copynumber: 3.4 Consensus size: 45
36501934 GTGACACACT
* * * *
36501944 TGTACAAAAACCTGTGACAAGTCATGATTAGCGTGTGAAATGCCA
1 TGTACAAAAGCCTGTGACAAGTCATGGTTAGCGTGTGACACGCCA
* * *
36501989 TGTACAAAAGCCTGTGACAAGCCATGGTTAGTGTGTTACACGCCA
1 TGTACAAAAGCCTGTGACAAGTCATGGTTAGCGTGTGACACGCCA
* *
36502034 TGTACCAAAGCCTATGACAAGTCATGGTTAGCGTGTGACACGCCA
1 TGTACAAAAGCCTGTGACAAGTCATGGTTAGCGTGTGACACGCCA
* *
36502079 TATACAAAAGCTTGTGA
1 TGTACAAAAGCCTGTGA
36502096 TAAACCATGT
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (45 bp):
TGTACAAAAGCCTGTGACAAGTCATGGTTAGCGTGTGACACGCCA
Found at i:36506018 original size:26 final size:26
Alignment explanation
Indices: 36505989--36506038 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
36505979 GACTGATTTT
*
36505989 TGATAAGGCATTGCGTAACTAGTTTC
1 TGATAAGACATTGCGTAACTAGTTTC
*
36506015 TGATAAGACATTGCGTGACTAGTT
1 TGATAAGACATTGCGTAACTAGTT
36506039 AATAGACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (26 bp):
TGATAAGACATTGCGTAACTAGTTTC
Found at i:36506071 original size:21 final size:21
Alignment explanation
Indices: 36506045--36506120 Score: 91
Period size: 21 Copynumber: 3.6 Consensus size: 21
36506035 AGTTAATAGA
*
36506045 CATTGCGTTACTGATTTTGGG
1 CATTGCGTGACTGATTTTGGG
* *
36506066 CATTGCGTGACT-AGTTAATAGG
1 CATTGCGTGACTGA-TT-TTGGG
*
36506088 CATTGCGTGATTGATTTTGGG
1 CATTGCGTGACTGATTTTGGG
36506109 CATTGCGTGACT
1 CATTGCGTGACT
36506121 AGTTTTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 27 0.60
22 16 0.36
23 1 0.02
ACGTcount: A:0.18, C:0.14, G:0.29, T:0.38
Consensus pattern (21 bp):
CATTGCGTGACTGATTTTGGG
Found at i:36506073 original size:43 final size:43
Alignment explanation
Indices: 36506023--36506124 Score: 177
Period size: 43 Copynumber: 2.4 Consensus size: 43
36506013 TCTGATAAGA
*
36506023 CATTGCGTGACTAGTTAATAGACATTGCGTTACTGATTTTGGG
1 CATTGCGTGACTAGTTAATAGACATTGCGTGACTGATTTTGGG
* *
36506066 CATTGCGTGACTAGTTAATAGGCATTGCGTGATTGATTTTGGG
1 CATTGCGTGACTAGTTAATAGACATTGCGTGACTGATTTTGGG
36506109 CATTGCGTGACTAGTT
1 CATTGCGTGACTAGTT
36506125 TTTTATAAGG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (43 bp):
CATTGCGTGACTAGTTAATAGACATTGCGTGACTGATTTTGGG
Found at i:36506136 original size:26 final size:26
Alignment explanation
Indices: 36506107--36506176 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
36506097 ATTGATTTTG
* *
36506107 GGCATTGCGTGACTAGTTTTTTATAA
1 GGCATTGCGTGACTAGTTTCTGATAA
36506133 GGCATTGCGTGACTAGTTTCTGATAA
1 GGCATTGCGTGACTAGTTTCTGATAA
** *
36506159 GATATTGCATGACTAGTT
1 GGCATTGCGTGACTAGTT
36506177 GATGGGCATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (26 bp):
GGCATTGCGTGACTAGTTTCTGATAA
Found at i:36506172 original size:138 final size:138
Alignment explanation
Indices: 36505934--36506190 Score: 381
Period size: 138 Copynumber: 1.9 Consensus size: 138
36505924 TGAAAATTAT
**
36505934 GTGACTAGTTTTTAAGCATTGCGTGACTGACTTTGGGCATTACGTGACTGATTTTTGATAAGGCA
1 GTGACTAGTTAATAAGCATTGCGTGACTGACTTTGGGCATTACGTGACTGATTTTTGATAAGGCA
*
36505999 TTGCGTAACTAGTTTCTGATAAGACATTGCGTGACTAGTTAATAGACATTGCGTTACTGATTTTG
66 TTGCGTAACTAGTTTCTGATAAGACATTGCATGACTAGTTAATAGACATTGCGTTACTGATTTTG
36506064 GGCATTGC
131 GGCATTGC
* * * * *
36506072 GTGACTAGTTAATAGGCATTGCGTGATTGATTTTGGGCATTGCGTGACT-AGTTTTTTATAAGGC
1 GTGACTAGTTAATAAGCATTGCGTGACTGACTTTGGGCATTACGTGACTGA-TTTTTGATAAGGC
* * * * *
36506136 ATTGCGTGACTAGTTTCTGATAAGATATTGCATGACTAGTTGATGGGCATTGCGT
65 ATTGCGTAACTAGTTTCTGATAAGACATTGCATGACTAGTTAATAGACATTGCGT
36506191 GATTTTTTAG
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 1 0.01
138 104 0.99
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.37
Consensus pattern (138 bp):
GTGACTAGTTAATAAGCATTGCGTGACTGACTTTGGGCATTACGTGACTGATTTTTGATAAGGCA
TTGCGTAACTAGTTTCTGATAAGACATTGCATGACTAGTTAATAGACATTGCGTTACTGATTTTG
GGCATTGC
Found at i:36508234 original size:27 final size:27
Alignment explanation
Indices: 36508196--36508250 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
36508186 TTATACTTCG
36508196 AATATAATAGATTGAAAAAGAAGAAAA
1 AATATAATAGATTGAAAAAGAAGAAAA
36508223 AATATAATAGATTGAAAAAGAAGAAAA
1 AATATAATAGATTGAAAAAGAAGAAAA
36508250 A
1 A
36508251 CAAATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (27 bp):
AATATAATAGATTGAAAAAGAAGAAAA
Found at i:36509533 original size:17 final size:16
Alignment explanation
Indices: 36509505--36509536 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
36509495 CATATAATGA
36509505 TTAAATATATAAATAG
1 TTAAATATATAAATAG
36509521 TTAAATAATATAAATA
1 TTAAAT-ATATAAATA
36509537 AAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
TTAAATATATAAATAG
Found at i:36512102 original size:19 final size:18
Alignment explanation
Indices: 36512075--36512110 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
36512065 CCCCTTCTAA
36512075 ATTTAAAAAATTTATAAAT
1 ATTTAAAAAATTT-TAAAT
*
36512094 ATTTTAAAAATTTTAAA
1 ATTTAAAAAATTTTAAA
36512111 CGAATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAAAAATTTTAAAT
Found at i:36512223 original size:19 final size:21
Alignment explanation
Indices: 36512199--36512238 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
36512189 ATATTATTTT
36512199 TTATTA-ATT-TAAAAAATTA
1 TTATTATATTCTAAAAAATTA
36512218 TTATTATATTCTAAAAAATTA
1 TTATTATATTCTAAAAAATTA
36512239 AATAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 3 0.16
21 10 0.53
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
TTATTATATTCTAAAAAATTA
Found at i:36512508 original size:17 final size:17
Alignment explanation
Indices: 36512486--36512518 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36512476 AGCCATAATA
36512486 ACAAAAAAAAAACAAAC
1 ACAAAAAAAAAACAAAC
*
36512503 ACAAAACAAAAACAAA
1 ACAAAAAAAAAACAAA
36512519 AAAGGAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (17 bp):
ACAAAAAAAAAACAAAC
Found at i:36513994 original size:347 final size:332
Alignment explanation
Indices: 36513238--36514102 Score: 1056
Period size: 336 Copynumber: 2.6 Consensus size: 332
36513228 ATATCTCAAA
* * * * *
36513238 TATAATTAATAATTTTATAAGTTATAA-GTTTTGTAATGTTAATAAAAAATAGAAACTAAATATG
1 TATAATTAATAATTTTATAAATTATAATTTTTTGTAATGTTAACACAAAATAGAAAATAAATATG
* * * *
36513302 TTTATATTTAAAGT-GTATACATACTAAAAGTATTTTAGTATATATATAATGGTAAGTATATTTC
66 TTTATATTTAAAGTAATATATATACTAAAAGTATTTTA--ATATATATAATAGTAATTATATTTC
* *
36513366 TTATAAATAAACCTAATGTATAAAAAGTATATATATTAAAAGACATTACAAGTTAATAAATAATC
129 TTATAAATAAA-CTAATATATATAAAGTATATATATTAAAAGACATTACAAGTTAATAAATAATC
* * *
36513431 TAAGTTTCATTAATTAATTTAATTAATTATATGAATTTGTCCTTAATTACATAAAATTAAAAAAA
193 TAAGTTTCATGAATTAATTTAATTAATTATATGAATTTGTCCTGAATTACAGAAAATTAAAAAAA
* * * *
36513496 TAACTAAGTTTCAAATCTCACAACTTTTCTTTAGATTTATATATTATAAGTGTATATAAACAAAT
258 TAACTAACTTTCAAATCTCACAACTTCTCTTTAGATTTATATATTATAAGTATATATAAACAAAG
36513561 GTATATATAT
323 GTATATATAT
* * * *
36513571 TGTAATTAATAATTTTATAATTTAT-ATATTTTTGTAATGTTAACACAAAATAGAGAGTAAATAT
1 TATAATTAATAATTTTATAAATTATAAT-TTTTTGTAATGTTAACACAAAATAGAAAATAAATAT
36513635 GTTTATATTTAAAGTACATACATATATACTAAAAGTATTTTAATATATATAATAGTAATTATATT
65 GTTTATATTTAAAGTA-AT--ATATATACTAAAAGTATTTTAATATATATAATAGTAATTATATT
* * * * *
36513700 CCTTATAAATGAACTTAATATATATAAAGTATATATATTAAAAGACATTATATGTTAATTAATAA
127 TCTTATAAATAAAC-TAATATATATAAAGTATATATATTAAAAGACATTACAAGTTAATAAATAA
*
36513765 -CTATAGTTTCATGAATTAATTTAATTAATTATAT-AAGTTTGTCCTGAATTACAGGAAATTAAA
191 TCTA-AGTTTCATGAATTAATTTAATTAATTATATGAA-TTTGTCCTGAATTACAGAAAATT-AA
* *
36513828 AAAAATAACTAGGTTTTAAAACTATTCAAATTTCACAA-TTCCTCTTTAGGTTTATATATTATAA
253 AAAAATAAC-------T--AACT-TTCAAATCTCACAACTT-CTCTTTAGATTTATATATTATAA
*
36513892 GTATATATAAATAAAGGTATATATAT
307 GTATATATAAACAAAGGTATATATAT
* *
36513918 TATAATTAATAATTTTATAAATTATAATTTTTTTTAATATTAACACAAAATAGAAAATAAATATG
1 TATAATTAATAATTTTATAAATTATAATTTTTTGTAATGTTAACACAAAATAGAAAATAAATATG
* *
36513983 TTTGTATTT-AA--AATATATAT--TAAAA-TATTTTAATATATATAGTAGTAATTATATTTCTT
66 TTTATATTTAAAGTAATATATATACTAAAAGTATTTTAATATATATAATAGTAATTATATTTCTT
* * * * * *
36514042 ATAAATTAAC-ACA-ATATATAAACTATATATATTAAAAAATATTACAAATTAATTAATAATC
131 ATAAATAAACTA-ATATATATAAAGTATATATATTAAAAGACATTACAAGTTAATAAATAATC
36514103 ATATTTTTAA
Statistics
Matches: 463, Mismatches: 45, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
332 1 0.00
333 23 0.05
334 46 0.10
335 6 0.01
336 168 0.36
337 13 0.03
338 61 0.13
339 5 0.01
341 6 0.01
343 2 0.00
344 2 0.00
346 7 0.02
347 121 0.26
348 2 0.00
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.42
Consensus pattern (332 bp):
TATAATTAATAATTTTATAAATTATAATTTTTTGTAATGTTAACACAAAATAGAAAATAAATATG
TTTATATTTAAAGTAATATATATACTAAAAGTATTTTAATATATATAATAGTAATTATATTTCTT
ATAAATAAACTAATATATATAAAGTATATATATTAAAAGACATTACAAGTTAATAAATAATCTAA
GTTTCATGAATTAATTTAATTAATTATATGAATTTGTCCTGAATTACAGAAAATTAAAAAAATAA
CTAACTTTCAAATCTCACAACTTCTCTTTAGATTTATATATTATAAGTATATATAAACAAAGGTA
TATATAT
Found at i:36516282 original size:14 final size:15
Alignment explanation
Indices: 36516258--36516297 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
36516248 CTTCTTTTCT
36516258 TTTCTCTCTCTTCAC
1 TTTCTCTCTCTTCAC
36516273 TTTC-CTCTC-TCAC
1 TTTCTCTCTCTTCAC
36516286 TTTCTCTCTCTT
1 TTTCTCTCTCTT
36516298 GCCACAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.35
14 10 0.43
15 5 0.22
ACGTcount: A:0.05, C:0.40, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTCTCTCTCTTCAC
Found at i:36516292 original size:12 final size:12
Alignment explanation
Indices: 36516262--36516295 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
36516252 TTTTCTTTTC
36516262 TCTCTCTTCACTT
1 TCTCTC-TCACTT
36516275 TCCTCTCTCACTT
1 T-CTCTCTCACTT
36516288 TCTCTCTC
1 TCTCTCTC
36516296 TTGCCACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 7 0.35
13 8 0.40
14 5 0.25
ACGTcount: A:0.06, C:0.44, G:0.00, T:0.50
Consensus pattern (12 bp):
TCTCTCTCACTT
Found at i:36517319 original size:20 final size:20
Alignment explanation
Indices: 36517294--36517334 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36517284 AAGTTTTCAT
36517294 AGGATAAGATGATGAAAATA
1 AGGATAAGATGATGAAAATA
*
36517314 AGGATAATATGATGAAAATA
1 AGGATAAGATGATGAAAATA
36517334 A
1 A
36517335 AATAATCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (20 bp):
AGGATAAGATGATGAAAATA
Found at i:36517345 original size:19 final size:20
Alignment explanation
Indices: 36517297--36517345 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
36517287 TTTTCATAGG
* *
36517297 ATAAGATGATGAAAATAAGG
1 ATAATATGATGAAAATAAGA
36517317 ATAATATGATGAAAATAA-A
1 ATAATATGATGAAAATAAGA
*
36517336 ATAATCTGAT
1 ATAATATGAT
36517346 ACAAGTATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.55, C:0.02, G:0.16, T:0.27
Consensus pattern (20 bp):
ATAATATGATGAAAATAAGA
Found at i:36520684 original size:23 final size:23
Alignment explanation
Indices: 36520640--36520684 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36520630 ATATATTAAT
* **
36520640 AATATTTAAATATTTTTTAAAAA
1 AATATTTAAATATTATCAAAAAA
36520663 AATATTTAAATATTATCAAAAA
1 AATATTTAAATATTATCAAAAA
36520685 GTAAATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AATATTTAAATATTATCAAAAAA
Found at i:36520706 original size:15 final size:16
Alignment explanation
Indices: 36520669--36520709 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
36520659 AAAAAATATT
*
36520669 TAAATATTATCAAAAAG
1 TAAAT-TTATCAAAAAA
36520686 TAAATTTATCAAAAAA
1 TAAATTTATCAAAAAA
36520702 T-AATTTAT
1 TAAATTTAT
36520710 ATATTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 11 0.48
17 5 0.22
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (16 bp):
TAAATTTATCAAAAAA
Found at i:36523318 original size:340 final size:336
Alignment explanation
Indices: 36522759--36523583 Score: 969
Period size: 340 Copynumber: 2.4 Consensus size: 336
36522749 ACGATTTCTT
* * * *
36522759 TTTAGATTTATATATTATATGTGTATATAAA-CAATG-GTATATATATATTGTAATTAATAATTT
1 TTTAGATTTATATATTATAAGT-TATATAAATAAATGAATATATATATATTATAATTAATAATTT
* *
36522822 TATAAATTATAA-TTTTGTAATGTTAACACAAAATAAAAAATAAATATGTTTACATTTAAAGTAC
65 TATAAATTATAATTTTTATAATGTTAACACAAAATAAAAAATAAATATGTTTATA-TT----T--
36522886 ATATACATATATATACTAAAAGTATTTTAATATATACAATAGTAATTATATTCTTTATAAATGAA
123 A-A-A-ATATATATA-TAAAAGTATTTTAATATATACAATAGTAATTATATTCTTTATAAATGAA
** * * * * *
36522951 CTTAATATATAACGAATATATATTAAAAGACATTATATGTCAATTAATAATTATTGTTTCATGAA
184 CACAATATATAACGAATATATATTAAAAGACATTAGAAGTCAATTAATAATCATAGTTTCATAAA
* *
36523016 TTAATTTAATTAACTATATGGATTTGTCCTTAATTACAAAAAATTAAAAAAAA-AAATAGGTTTC
249 TTAATTTAATTAACTATATGAATTTGTCCTTAATTACAAAAAATTAAAAAAAATAAA-A--TTCC
* * *
36523080 AAAACTATTTTAATTTCACAA-TCTC
311 AAAACTATTCTAATCTCAAAACTCTC
*
36523105 TTTAGGTTTATATATTATAAGTATATATAAATAAATGTATATATATATATATTATAATTAATAAT
1 TTTAGATTTATATATTATAAGT-TATATAAATAAATG-A-ATATATATATATTATAATTAATAAT
* * * *
36523170 TTTATAAATTATAATTTTTTTAATGTTAACATAAAATAGAAAGTAAATATGTTTATATTTAAAAT
63 TTTATAAATTATAATTTTTATAATGTTAACACAAAATAAAAAATAAATATGTTTATATTTAAAAT
* * *
36523235 ATATAT-TAAAA-TATTTTAGTATATATATAATAGTAATTATGTT-TCTTATAAATTAACACAAT
128 ATATATATAAAAGTATTTTA--ATATATACAATAGTAATTATATTCT-TTATAAATGAACACAAT
* * *
36523297 ATATAAAC-TATATATATTAAAAGACATTAGAAGTTAATTAATAATCATAGTTTTATAAATTAAT
190 ATAT-AACGAATATATATTAAAAGACATTAGAAGTCAATTAATAATCATAGTTTCATAAATTAAT
* * ** *
36523361 TTAATTAACTATATGAATTTGTCTTTAATTTCATGAAATTAAAAAAAATTAAATTCCAAAACTAT
254 TTAATTAACTATATGAATTTGTCCTTAATTACAAAAAATTAAAAAAAATAAAATTCCAAAACTAT
36523426 TCTAATCTCAAAAGCTCTC
319 TCTAATCTCAAAA-CTCTC
*
36523445 TTTA-ATTATATATATTATAAGTT-TAT--ATAAA-CAATAGTATATATATTATAATTAATAATT
1 TTTAGATT-TATATATTATAAGTTATATAAATAAATGAATA-TATATATATTATAATTAATAATT
* *
36523505 TTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAATAAATATATTTATA-TTAAAAGT
64 TTATAAATTATAATTTTTATAATGTTAACACAAAATAAAAAATAAATATGTTTATATTTAAAA-T
*
36523569 ATATATATAATAGTA
128 ATATATATAAAAGTA
36523584 ATTATATTCC
Statistics
Matches: 419, Mismatches: 43, Indels: 44
0.83 0.08 0.09
Matches are distributed among these distances:
333 9 0.02
334 81 0.19
335 4 0.01
336 7 0.02
338 31 0.07
339 9 0.02
340 153 0.37
341 13 0.03
342 1 0.00
343 1 0.00
344 1 0.00
346 29 0.07
347 4 0.01
350 39 0.09
351 37 0.09
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (336 bp):
TTTAGATTTATATATTATAAGTTATATAAATAAATGAATATATATATATTATAATTAATAATTTT
ATAAATTATAATTTTTATAATGTTAACACAAAATAAAAAATAAATATGTTTATATTTAAAATATA
TATATAAAAGTATTTTAATATATACAATAGTAATTATATTCTTTATAAATGAACACAATATATAA
CGAATATATATTAAAAGACATTAGAAGTCAATTAATAATCATAGTTTCATAAATTAATTTAATTA
ACTATATGAATTTGTCCTTAATTACAAAAAATTAAAAAAAATAAAATTCCAAAACTATTCTAATC
TCAAAACTCTC
Found at i:36523510 original size:15 final size:15
Alignment explanation
Indices: 36523490--36523527 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
36523480 AGTATATATA
36523490 TTATAATTAATAA-TT
1 TTATAATT-ATAATTT
36523505 TTATAAGTTATAATTT
1 TTATAA-TTATAATTT
36523521 TTATAAT
1 TTATAAT
36523528 GTTAACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTATAATTATAATTT
Found at i:36524962 original size:20 final size:20
Alignment explanation
Indices: 36524937--36524977 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36524927 AAGTTTTCAT
36524937 AGGATAAGATGATGAAAATA
1 AGGATAAGATGATGAAAATA
*
36524957 AGGATAATATGATGAAAATA
1 AGGATAAGATGATGAAAATA
36524977 A
1 A
36524978 AATAATCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (20 bp):
AGGATAAGATGATGAAAATA
Found at i:36524988 original size:19 final size:20
Alignment explanation
Indices: 36524940--36524988 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
36524930 TTTTCATAGG
* *
36524940 ATAAGATGATGAAAATAAGG
1 ATAATATGATGAAAATAAGA
36524960 ATAATATGATGAAAATAA-A
1 ATAATATGATGAAAATAAGA
*
36524979 ATAATCTGAT
1 ATAATATGAT
36524989 ACAAGTATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.55, C:0.02, G:0.16, T:0.27
Consensus pattern (20 bp):
ATAATATGATGAAAATAAGA
Found at i:36528465 original size:14 final size:13
Alignment explanation
Indices: 36528447--36528494 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
36528437 TATTTCTATT
*
36528447 TAAATTTAAAATA
1 TAAATATAAAATA
36528460 TTAAATATAAAACTA
1 -TAAATATAAAA-TA
36528475 TAATATATAAAATA
1 TAA-ATATAAAATA
36528489 TAAATA
1 TAAATA
36528495 GTTAAATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
13 3 0.10
14 18 0.58
15 10 0.32
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAATATAAAATA
Found at i:36528484 original size:15 final size:14
Alignment explanation
Indices: 36528453--36528509 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
36528443 TATTTAAATT
36528453 TAAAATATTAA-ATA
1 TAAAATA-TAATATA
36528467 TAAAACTATAATATA
1 TAAAA-TATAATATA
36528482 TAAAATATAA-ATA
1 TAAAATATAATATA
* *
36528495 GTTAAATACAATATA
1 -TAAAATATAATATA
36528510 CAGAATTTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
13 3 0.08
14 21 0.57
15 13 0.35
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (14 bp):
TAAAATATAATATA
Found at i:36528543 original size:9 final size:9
Alignment explanation
Indices: 36528529--36528561 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
36528519 ACATAATGAT
36528529 TAAATAATA
1 TAAATAATA
36528538 TAAATAAT-
1 TAAATAATA
36528546 TAAATAATA
1 TAAATAATA
36528555 TAAATAA
1 TAAATAA
36528562 AAAAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAATAATA
Found at i:36528549 original size:17 final size:17
Alignment explanation
Indices: 36528527--36528561 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36528517 TCACATAATG
36528527 ATTAAATAATATAAATA
1 ATTAAATAATATAAATA
36528544 ATTAAATAATATAAATA
1 ATTAAATAATATAAATA
36528561 A
1 A
36528562 AAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATTAAATAATATAAATA
Found at i:36528882 original size:15 final size:15
Alignment explanation
Indices: 36528864--36528914 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
36528854 AGAATTATTT
36528864 AAAAAATATATAATA
1 AAAAAATATATAATA
* *
36528879 AAAAAATA-A-ATTT
1 AAAAAATATATAATA
36528892 AAAAAATATATAATA
1 AAAAAATATATAATA
*
36528907 AATAAATA
1 AAAAAATA
36528915 ATTTTAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
13 10 0.34
14 2 0.07
15 17 0.59
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAAAATATATAATA
Found at i:36528891 original size:28 final size:28
Alignment explanation
Indices: 36528860--36528923 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
36528850 TAAAAGAATT
36528860 ATTTAAAAAATATATAATAAAAAAATAA
1 ATTTAAAAAATATATAATAAAAAAATAA
*
36528888 ATTTAAAAAATATATAATAAATAAATAA
1 ATTTAAAAAATATATAATAAAAAAATAA
*
36528916 TTTTAAAA
1 ATTTAAAA
36528924 TTTTAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (28 bp):
ATTTAAAAAATATATAATAAAAAAATAA
Found at i:36528922 original size:14 final size:13
Alignment explanation
Indices: 36528836--36528923 Score: 52
Period size: 14 Copynumber: 6.4 Consensus size: 13
36528826 AATTATTAAA
*
36528836 TAAAATAATTATTT
1 TAAAA-AATAATTT
*
36528850 TAAAAGAATTA-TT
1 TAAAA-AATAATTT
*
36528863 TAAAAAATATATAAT
1 TAAAAAATA-AT-TT
* *
36528878 AAAAAAATAAATT
1 TAAAAAATAATTT
**
36528891 TAAAAAATATATAA
1 TAAAAAATA-ATTT
36528905 TAAATAAATAATTT
1 TAAA-AAATAATTT
36528919 TAAAA
1 TAAAA
36528924 TTTTAAAAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
12 3 0.05
13 18 0.32
14 22 0.39
15 14 0.25
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (13 bp):
TAAAAAATAATTT
Found at i:36531136 original size:85 final size:86
Alignment explanation
Indices: 36530988--36531152 Score: 237
Period size: 85 Copynumber: 1.9 Consensus size: 86
36530978 TATTCTGCAC
* * *
36530988 GGTTCTTGTTATATAACATAGGATTAGAAATTCGAAAATATTAAAGAAAGGTTTAAAGCTTTATT
1 GGTTCTTGTTATATAACATAGGATTAGAAAATCGAAAATATTAAAAAAAAGTTTAAAGCTTTA-T
* *
36531053 TGTCTTACTGTTAATATGCAAA
65 TATCTTACTGTAAATATGCAAA
*
36531075 GGTTCTTGTTA-ATAACATAGGATTAGAAAATC-AAAAGT-TTAAAAAAAAGTTTAAAGTTTTAT
1 GGTTCTTGTTATATAACATAGGATTAGAAAATCGAAAA-TATTAAAAAAAAGTTTAAAGCTTTAT
36531137 TATCTTACTGTAAATA
65 TATCTTACTGTAAATA
36531153 AGTAAAAAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
84 15 0.21
85 24 0.34
86 21 0.30
87 11 0.15
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.38
Consensus pattern (86 bp):
GGTTCTTGTTATATAACATAGGATTAGAAAATCGAAAATATTAAAAAAAAGTTTAAAGCTTTATT
ATCTTACTGTAAATATGCAAA
Found at i:36549201 original size:6 final size:6
Alignment explanation
Indices: 36549192--36549221 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
36549182 CGCAATTATT
36549192 CCCCTC CCCCTC CCCCTC CCCCTC CCCCTC
1 CCCCTC CCCCTC CCCCTC CCCCTC CCCCTC
36549222 TTATCTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.83, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCCTC
Found at i:36562512 original size:25 final size:25
Alignment explanation
Indices: 36562484--36562534 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
36562474 TATACAAGTT
36562484 TTAT-ATATTATTAATAAATTAAATG
1 TTATCATATTATTAATAAA-TAAATG
36562509 TTATCATATTATTAATAAATAAATG
1 TTATCATATTATTAATAAATAAATG
36562534 T
1 T
36562535 AAAAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (25 bp):
TTATCATATTATTAATAAATAAATG
Found at i:36565838 original size:21 final size:19
Alignment explanation
Indices: 36565797--36565839 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
36565787 AGATATAAAT
* *
36565797 ATATTATTAAAATTTTGTA
1 ATATTATTAAAATTATATA
36565816 ATATTAATTATAAATTATATA
1 ATATT-ATTA-AAATTATATA
36565837 ATA
1 ATA
36565840 AACAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATATTATTAAAATTATATA
Found at i:36567132 original size:11 final size:12
Alignment explanation
Indices: 36567118--36567150 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
36567108 TTTTAATCAT
36567118 TTTTTTCAAT-A
1 TTTTTTCAATAA
36567129 TTTTTTCAATAA
1 TTTTTTCAATAA
36567141 TTATTTTCAA
1 TT-TTTTCAA
36567151 AAAAAGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
12 3 0.15
13 7 0.35
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTTTTCAATAA
Found at i:36567232 original size:2 final size:2
Alignment explanation
Indices: 36567225--36567253 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36567215 ATTAACAATA
36567225 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36567254 ATGATTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36576534 original size:27 final size:28
Alignment explanation
Indices: 36576483--36576535 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
36576473 ATTAATTTGA
* *
36576483 AAAAAATATATTTAATTATCATTCTACC
1 AAAAAATAAATTTAATAATCATTCTACC
*
36576511 AAAAAATAAATTTAA-AATCTTTCTA
1 AAAAAATAAATTTAATAATCATTCTA
36576536 TTCTACTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (28 bp):
AAAAAATAAATTTAATAATCATTCTACC
Found at i:36591097 original size:27 final size:25
Alignment explanation
Indices: 36591036--36591097 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 25
36591026 CTTATGAATA
36591036 AATGAAATATATATAATATTTATAC
1 AATGAAATATATATAATATTTATAC
* * *
36591061 AATCATATATATCATAATATTTTATAT
1 AATGAAATATAT-ATAATA-TTTATAC
*
36591088 TATGAAATAT
1 AATGAAATAT
36591098 TATTAAGATG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
25 10 0.34
26 6 0.21
27 13 0.45
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (25 bp):
AATGAAATATATATAATATTTATAC
Found at i:36591190 original size:21 final size:20
Alignment explanation
Indices: 36591153--36591191 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
36591143 CTATCATATA
*
36591153 TTATAATATTAACATATAAG
1 TTATAATATTAAAATATAAG
*
36591173 TTATATTATTTAAAATATA
1 TTATAATA-TTAAAATATA
36591192 TAACTTGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (20 bp):
TTATAATATTAAAATATAAG
Done.