Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37323695
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 1370832 characters in sequence are not A, C, G, or T
File 93 of 93
Found at i:37266905 original size:4 final size:4
Alignment explanation
Indices: 37266896--37266922 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
37266886 TTCTTTTTGT
37266896 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
37266923 AACAAAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:37270973 original size:114 final size:114
Alignment explanation
Indices: 37270773--37271114 Score: 684
Period size: 114 Copynumber: 3.0 Consensus size: 114
37270763 ATTTTCAAAA
37270773 GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
1 GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
37270838 AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
66 AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
37270887 GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
1 GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
37270952 AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
66 AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
37271001 GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
1 GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
37271066 AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
66 AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
37271115 ACATCTTCCA
Statistics
Matches: 228, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 228 1.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.24
Consensus pattern (114 bp):
GCAACCACAACATTCTTAAAAGCACTGCATCCTTCCCTTGCCAGTTCAATAAGGGTAATGAGTTC
AGATGAAGCATATCAACCAAATTATCATGAGGCAGGAATGACAAGTTAC
Found at i:37280333 original size:37 final size:38
Alignment explanation
Indices: 37280254--37280342 Score: 112
Period size: 37 Copynumber: 2.4 Consensus size: 38
37280244 CTCGTCTGTC
* * *
37280254 AGTCGCCCTTCC-CTCGTGTTCATCTTCTCTCTCAACT
1 AGTCGTCCTTCCTCTCGTCTTCATCTCCTCTCTCAACT
*
37280291 AGTCGTCCTTCCTC-CGTCTTCATCTCCTCTCTCAGCT
1 AGTCGTCCTTCCTCTCGTCTTCATCTCCTCTCTCAACT
*
37280328 GGTCGT-CTTCCTCTC
1 AGTCGTCCTTCCTCTC
37280343 TCTCAACCGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
36 7 0.16
37 37 0.82
38 1 0.02
ACGTcount: A:0.08, C:0.42, G:0.12, T:0.38
Consensus pattern (38 bp):
AGTCGTCCTTCCTCTCGTCTTCATCTCCTCTCTCAACT
Found at i:37281926 original size:22 final size:20
Alignment explanation
Indices: 37281880--37281929 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
37281870 CTAGAGCCAC
* *
37281880 AATATATGAAAATGCTTTAT
1 AATATATGAAAATGATTCAT
37281900 AATATATGAAAATGATTCAT
1 AATATATGAAAATGATTCAT
37281920 AATATATGAA
1 AATATATGAA
37281930 GAATTGACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.36
Consensus pattern (20 bp):
AATATATGAAAATGATTCAT
Found at i:37282433 original size:20 final size:20
Alignment explanation
Indices: 37282396--37282435 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37282386 GTTGCGGGAC
* *
37282396 AAAGTTAGAACGAGAGGAAG
1 AAAGTTAGAACAAAAGGAAG
37282416 AAAGTTAGAACAAAAGGAAG
1 AAAGTTAGAACAAAAGGAAG
37282436 CTTACTGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.30, T:0.10
Consensus pattern (20 bp):
AAAGTTAGAACAAAAGGAAG
Found at i:37283223 original size:16 final size:16
Alignment explanation
Indices: 37283202--37283251 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
37283192 TTATAAACAA
37283202 ATAAATTACACAAAAT
1 ATAAATTACACAAAAT
*
37283218 ATAAA-TA-A-ACAA-
1 ATAAATTACACAAAAT
37283230 ATAAATTACACAAAAT
1 ATAAATTACACAAAAT
37283246 ATAAAT
1 ATAAAT
37283252 AAACAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 5 0.18
13 5 0.18
14 2 0.07
15 5 0.18
16 11 0.39
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAATTACACAAAAT
Found at i:37283229 original size:28 final size:28
Alignment explanation
Indices: 37283194--37283282 Score: 142
Period size: 28 Copynumber: 3.2 Consensus size: 28
37283184 AAAACATATT
37283194 ATAAACAAATAAATTACACAAAATATAA
1 ATAAACAAATAAATTACACAAAATATAA
37283222 ATAAACAAATAAATTACACAAAATATAA
1 ATAAACAAATAAATTACACAAAATATAA
* ** *
37283250 ATAAACAAATAAGTTACATTAAACATAA
1 ATAAACAAATAAATTACACAAAATATAA
37283278 ATAAA
1 ATAAA
37283283 GTTTCAATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.66, C:0.10, G:0.01, T:0.22
Consensus pattern (28 bp):
ATAAACAAATAAATTACACAAAATATAA
Found at i:37283936 original size:12 final size:12
Alignment explanation
Indices: 37283919--37283962 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
37283909 CTCTCTCCCG
37283919 TAGATAAAAACA
1 TAGATAAAAACA
*
37283931 TAGATAAATA-A
1 TAGATAAAAACA
37283942 T---TAAAAACA
1 TAGATAAAAACA
37283951 TAGATAAAAACA
1 TAGATAAAAACA
37283963 ACAATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
8 5 0.19
9 2 0.08
11 2 0.08
12 17 0.65
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (12 bp):
TAGATAAAAACA
Found at i:37288425 original size:35 final size:35
Alignment explanation
Indices: 37288386--37288545 Score: 194
Period size: 35 Copynumber: 4.6 Consensus size: 35
37288376 CAGTTAGTAA
* *
37288386 AAGTAGAAATCAGAAATGGCGACGGTAGTCGGCAG
1 AAGTAGAAATCAGAAATGGCGACGGCAGTCGACAG
* ** * *
37288421 AAGTAGAAATCAGAAAGGGATACTGCAGTCGACAA
1 AAGTAGAAATCAGAAATGGCGACGGCAGTCGACAG
* *
37288456 AAGTAGAAATCAGAAAGGGCGATGGCAGTCGACAG
1 AAGTAGAAATCAGAAATGGCGACGGCAGTCGACAG
* * * *
37288491 AAGCAGAAATCAAAAATGGCAACGGTAGTCGACAG
1 AAGTAGAAATCAGAAATGGCGACGGCAGTCGACAG
*
37288526 AAGTAGAAACCAGAAATGGC
1 AAGTAGAAATCAGAAATGGC
37288546 AATGACATTC
Statistics
Matches: 104, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 104 1.00
ACGTcount: A:0.43, C:0.15, G:0.29, T:0.12
Consensus pattern (35 bp):
AAGTAGAAATCAGAAATGGCGACGGCAGTCGACAG
Found at i:37291472 original size:24 final size:24
Alignment explanation
Indices: 37291444--37291495 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
37291434 CACACGATTT
* *
37291444 TCTTTCTACCTATTTTTTTCTTTC
1 TCTTTCTACCTATCTTTCTCTTTC
*
37291468 TCTTTCTACCTCTCTTTCTCTTTC
1 TCTTTCTACCTATCTTTCTCTTTC
37291492 -CTTT
1 TCTTT
37291496 TTCTCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (24 bp):
TCTTTCTACCTATCTTTCTCTTTC
Found at i:37292906 original size:2 final size:2
Alignment explanation
Indices: 37292899--37292945 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
37292889 TACAGTCAAC
37292899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37292941 AT AT A
1 AT AT A
37292946 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37292984 original size:2 final size:2
Alignment explanation
Indices: 37292977--37293022 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
37292967 NNNNNNNNNN
37292977 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37293019 AT AT
1 AT AT
37293023 TCCATCTTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37294258 original size:21 final size:22
Alignment explanation
Indices: 37294227--37294279 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
37294217 ATACTCGACG
*
37294227 TAAAAATTTATTAAAA-TTATTA
1 TAAAAA-TTATTAAAATTTAATA
37294249 TAAAAATTA-TAAAATTTAATA
1 TAAAAATTATTAAAATTTAATA
*
37294270 AAAAAATTAT
1 TAAAAATTAT
37294280 ATATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 5 0.19
21 16 0.59
22 6 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAATTATTAAAATTTAATA
Found at i:37295195 original size:21 final size:20
Alignment explanation
Indices: 37295163--37295205 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
37295153 GGCGGACTAG
37295163 AAAAAAAAAATAA-AAAAAC
1 AAAAAAAAAATAAGAAAAAC
*
37295182 AAAAAGAATAAATAAGAAAGAC
1 AAAAA-AA-AAATAAGAAAAAC
37295204 AA
1 AA
37295206 TGGTGAGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 6 0.30
22 7 0.35
ACGTcount: A:0.81, C:0.05, G:0.07, T:0.07
Consensus pattern (20 bp):
AAAAAAAAAATAAGAAAAAC
Found at i:37295466 original size:30 final size:31
Alignment explanation
Indices: 37295430--37295515 Score: 102
Period size: 30 Copynumber: 2.8 Consensus size: 31
37295420 AAGTTTAAGC
**
37295430 ATTTTGAGAATTTTTATAGTTTTTTTATGA-
1 ATTTTGAGAATTTTTATAGTTTTTTTAAAAG
* *
37295460 ATTTTGAAAATTTTTAAAGTTTTTTTAAAAG
1 ATTTTGAGAATTTTTATAGTTTTTTTAAAAG
* *
37295491 ATTTTTAGAGATTTTTATGGTTTTT
1 ATTTTGAGA-ATTTTTATAGTTTTT
37295516 AAGGGTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 26 0.57
31 7 0.15
32 13 0.28
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (31 bp):
ATTTTGAGAATTTTTATAGTTTTTTTAAAAG
Found at i:37295484 original size:10 final size:10
Alignment explanation
Indices: 37295460--37295536 Score: 50
Period size: 10 Copynumber: 7.7 Consensus size: 10
37295450 TTTTTTATGA
*
37295460 ATTTTGAAA-
1 ATTTTTAAAG
37295469 ATTTTTAAAG
1 ATTTTTAAAG
*
37295479 TTTTTTTAAAAG
1 -ATTTTT-AAAG
*
37295491 ATTTTTAGAG
1 ATTTTTAAAG
*
37295501 ATTTTT-ATG
1 ATTTTTAAAG
* *
37295510 GTTTTTAAGG
1 ATTTTTAAAG
* *
37295520 GTTTTTAAAA
1 ATTTTTAAAG
37295530 ATTTTTA
1 ATTTTTA
37295537 TGCATTTTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
9 14 0.26
10 25 0.47
11 10 0.19
12 4 0.08
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (10 bp):
ATTTTTAAAG
Found at i:37295544 original size:19 final size:19
Alignment explanation
Indices: 37295522--37295563 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
37295512 TTTTAAGGGT
37295522 TTTTAAA-AATTTTTATGCA
1 TTTTAAAGAATTTTTATG-A
37295541 TTTTAAAGAATTTTTATGA
1 TTTTAAAGAATTTTTATGA
37295560 TTTT
1 TTTT
37295564 TTAATTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTTAAAGAATTTTTATGA
Found at i:37295544 original size:20 final size:20
Alignment explanation
Indices: 37295521--37295564 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
37295511 TTTTTAAGGG
37295521 TTTTTAAA-AATTTTTATGCA
1 TTTTTAAAGAATTTTTATG-A
37295541 -TTTTAAAGAATTTTTATGA
1 TTTTTAAAGAATTTTTATGA
37295560 TTTTT
1 TTTTT
37295565 TAATTGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (20 bp):
TTTTTAAAGAATTTTTATGA
Found at i:37295726 original size:10 final size:10
Alignment explanation
Indices: 37295694--37298149 Score: 448
Period size: 10 Copynumber: 248.7 Consensus size: 10
37295684 CTTTTTATAG
*
37295694 TTTTTCAAGTA
1 TTTTT-AAGGA
*
37295705 TTTTTAAAGA
1 TTTTTAAGGA
37295715 TTTTTAAGGA
1 TTTTTAAGGA
* *
37295725 TTCTTAGGGA
1 TTTTTAAGGA
37295735 TTTTTAAGGA
1 TTTTTAAGGA
* *
37295745 TTTTAAATGA
1 TTTTTAAGGA
* *
37295755 TTTTCAATGA
1 TTTTTAAGGA
37295765 TTTTTAA-GA
1 TTTTTAAGGA
37295774 TTTTTAAGGA
1 TTTTTAAGGA
***
37295784 GACTTAAGGA
1 TTTTTAAGGA
*
37295794 TATTTAAGGA
1 TTTTTAAGGA
* *
37295804 TTTTAAAGTA
1 TTTTTAAGGA
37295814 TTTTTAAGGA
1 TTTTTAAGGA
37295824 TTTTTAA--A
1 TTTTTAAGGA
*
37295832 --ATTAAGGA
1 TTTTTAAGGA
* *
37295840 -TTTTATGGTT
1 TTTTTAAGG-A
*
37295850 TTTCTTATA-GT
1 TTT-TTA-AGGA
37295861 TTTTTAA-GA
1 TTTTTAAGGA
* *
37295870 TTTTTAAAGT
1 TTTTTAAGGA
* *
37295880 TTTCTTATGAA
1 TTT-TTAAGGA
37295891 TTTTTAA-GA
1 TTTTTAAGGA
37295900 TTTTTAAAGGA
1 TTTTT-AAGGA
*
37295911 TTTTCAAGGA
1 TTTTTAAGGA
* *
37295921 CTTTTAAAAGA
1 -TTTTTAAGGA
* *
37295932 TTTTCAAAGA
1 TTTTTAAGGA
*
37295942 TTTTTTAATAGA
1 -TTTTTAA-GGA
37295954 TTTTTAAGGA
1 TTTTTAAGGA
* *
37295964 TTTTAAAAGA
1 TTTTTAAGGA
*
37295974 CTTTTAAGG-
1 TTTTTAAGGA
*
37295983 TTTTTATA-TA
1 TTTTTA-AGGA
*
37295993 TTTTTAAGAA
1 TTTTTAAGGA
* **
37296003 TTTTTATGTT
1 TTTTTAAGGA
*
37296013 TTTTTAGAGGGT
1 TTTTTA-A-GGA
*
37296025 TTTTTAAAGA
1 TTTTTAAGGA
*
37296035 TTATTAA-G-
1 TTTTTAAGGA
*
37296043 --TTTGAGGA
1 TTTTTAAGGA
37296051 -TTTTAAGG-
1 TTTTTAAGGA
* *
37296059 TTTTT-TGTAA
1 TTTTTAAG-GA
* *
37296069 TTGTTTATGAA
1 TT-TTTAAGGA
* * *
37296080 ATTTGAAAGA
1 TTTTTAAGGA
*
37296090 TTTTAAAGG-
1 TTTTTAAGGA
37296099 TTTTTAAGGA
1 TTTTTAAGGA
***
37296109 TTTTGGGGGA
1 TTTTTAAGGA
37296119 TTTTTAAAGGGA
1 TTTTT-AA-GGA
*
37296131 TTTTTAATGA
1 TTTTTAAGGA
*
37296141 TTTTTAAGTA
1 TTTTTAAGGA
37296151 TTTTTAAGG-
1 TTTTTAAGGA
37296160 ---TTAAGGA
1 TTTTTAAGGA
**
37296167 -TTTTAA-CC
1 TTTTTAAGGA
*
37296175 TTTTTGTA-GA
1 TTTTT-AAGGA
* *
37296185 TTTTAAATGA
1 TTTTTAAGGA
37296195 TTTTTATA-GA
1 TTTTTA-AGGA
*
37296205 TTTTTAGGGA
1 TTTTTAAGGA
*
37296215 TTTTTAA-AA
1 TTTTTAAGGA
** *
37296224 AATTCAAGGAA
1 TTTTTAAGG-A
* **
37296235 TTTTAAAAATA
1 TTTT-TAAGGA
**
37296246 TTTTTAAAGTC
1 TTTTT-AAGGA
* *
37296257 TTTTTATGGT
1 TTTTTAAGGA
*
37296267 TTTTTAAAAAGA
1 TTTTT--AAGGA
37296279 TTTTTAAGG-
1 TTTTTAAGGA
**
37296288 TTTTTAAAAA
1 TTTTTAAGGA
37296298 TTTTTAAGGA
1 TTTTTAAGGA
*
37296308 TTTTTAAAGA
1 TTTTTAAGGA
* *
37296318 TTTTTACGCA
1 TTTTTAAGGA
37296328 TTTTTAAGGA
1 TTTTTAAGGA
**
37296338 TTTTTTTGG-
1 TTTTTAAGGA
*
37296347 TTTTTAAAGAA
1 TTTTT-AAGGA
* *
37296358 TTTTAAAAGA
1 TTTTTAAGGA
* *
37296368 TTTTTACGCA
1 TTTTTAAGGA
37296378 TTTTTAAGGA
1 TTTTTAAGGA
**
37296388 TTTTTTTGG-
1 TTTTTAAGGA
*
37296397 TTTTTAAAGAA
1 TTTTT-AAGGA
* *
37296408 TTTTAAAAGA
1 TTTTTAAGGA
37296418 TTTTT----A
1 TTTTTAAGGA
*
37296424 TGTTTAAGGA
1 TTTTTAAGGA
***
37296434 -TTTTAATTTTT
1 TTTTTAA--GGA
37296445 TTTTTATA-G-
1 TTTTTA-AGGA
*
37296454 TTTTTGGAGGA
1 TTTTT-AAGGA
*
37296465 TTTTGAAAGG-
1 TTTT-TAAGGA
* *
37296475 TTTTT-ATGT
1 TTTTTAAGGA
*
37296484 TTTTTAAAAGA
1 TTTTT-AAGGA
37296495 TTTTTAAGGA
1 TTTTTAAGGA
*
37296505 TTATTAA-G-
1 TTTTTAAGGA
37296513 --TTTAAGGA
1 TTTTTAAGGA
*
37296521 -TTTTAAGGG
1 TTTTTAAGGA
*
37296530 TTTTTATA-GT
1 TTTTTA-AGGA
*
37296540 TTTTTATGGA
1 TTTTTAAGGA
* *
37296550 ATTTAAAGGA
1 TTTTTAAGGA
*
37296560 TTTTTTAAAAGA
1 -TTTTT-AAGGA
*
37296572 TTCTTT-GGGA
1 TT-TTTAAGGA
37296582 TTTTTAAGG-
1 TTTTTAAGGA
37296591 TTTTTAAGAGA
1 TTTTTAAG-GA
*
37296602 TTTTTAACGA
1 TTTTTAAGGA
37296612 TTTTTAAGGA
1 TTTTTAAGGA
*
37296622 TTTTTGAGG-
1 TTTTTAAGGA
*
37296631 ---TTGAGGA
1 TTTTTAAGGA
*
37296638 -TTTTAATGA
1 TTTTTAAGGA
37296647 TTTTTAAGGA
1 TTTTTAAGGA
* **
37296657 TTTTCAAAAA
1 TTTTTAAGGA
* *
37296667 ATTTTAAGGT
1 TTTTTAAGGA
*
37296677 TTTTTAAAGA
1 TTTTTAAGGA
*
37296687 ATTTTAATGGA
1 TTTTTAA-GGA
* * *
37296698 TTCTTAATGT
1 TTTTTAAGGA
*
37296708 TTTTTAAAAGA
1 TTTTT-AAGGA
* *
37296719 TTTGTAAAGGT
1 TTT-TTAAGGA
* *
37296730 TTTTTTAGGC
1 TTTTTAAGGA
37296740 TTTTTAAGGA
1 TTTTTAAGGA
* *
37296750 TTTTTTATGAA
1 -TTTTTAAGGA
* *
37296761 TTTTT-ATGC
1 TTTTTAAGGA
37296770 TTTTTAATGGA
1 TTTTTAA-GGA
* *
37296781 -TTTTATATGT
1 TTTTTA-AGGA
37296791 TTTTTAA-G-
1 TTTTTAAGGA
*
37296799 --TTTAAGGT
1 TTTTTAAGGA
* **
37296807 TTTTTTATAA
1 TTTTTAAGGA
*
37296817 TTTTTCAGGGA
1 TTTTT-AAGGA
*
37296828 TTTTTTAA-AA
1 -TTTTTAAGGA
*
37296838 TTTTTTGAGGA
1 -TTTTTAAGGA
*
37296849 TTGTT-AGAGA
1 TTTTTAAG-GA
* *
37296859 TTTTAAAGAA
1 TTTTTAAGGA
* *
37296869 TTTTGAAAGA
1 TTTTTAAGGA
*
37296879 TTTTGAAGGA
1 TTTTTAAGGA
*
37296889 TTTTTAAGAA
1 TTTTTAAGGA
***
37296899 GACTTAAGGA
1 TTTTTAAGGA
*
37296909 TATTTAAGGA
1 TTTTTAAGGA
* * **
37296919 GTTTCAACAA
1 TTTTTAAGGA
37296929 TTTTTAAGGA
1 TTTTTAAGGA
* *
37296939 TTTTAAATGA
1 TTTTTAAGGA
*
37296949 TTTTTAAGTA
1 TTTTTAAGGA
*
37296959 TTTTTGAGG-
1 TTTTTAAGGA
*
37296968 ---TTAATGA
1 TTTTTAAGGA
*
37296975 TTTTATAA--T
1 TTTT-TAAGGA
*
37296984 TTTTTATA-GT
1 TTTTTA-AGGA
*
37296994 TTTTTAAGAA
1 TTTTTAAGGA
37297004 TTTTTAAGG-
1 TTTTTAAGGA
*
37297013 TTTTATGATA-AA
1 TTTT-T-A-AGGA
*
37297025 TTTTTAAGAA
1 TTTTTAAGGA
*
37297035 TTTTTAAAG-
1 TTTTTAAGGA
* *
37297044 TTTTGAAAGAA
1 TTTT-TAAGGA
37297055 TTTTTAA--A
1 TTTTTAAGGA
* * *
37297063 --ATTATGCA
1 TTTTTAAGGA
*
37297071 -TTTTAAGGTTTT
1 TTTTTAAGG---A
37297083 TTTTTATA-GA
1 TTTTTA-AGGA
*
37297093 TTTTAAAGGA
1 TTTTTAAGGA
* *
37297103 TTTTCAAGTA
1 TTTTTAAGGA
*
37297113 CTTTTAAGGA
1 TTTTTAAGGA
*
37297123 TTTTTAAAGA
1 TTTTTAAGGA
* *
37297133 TATTTAAGAA
1 TTTTTAAGGA
* *
37297143 TTTTTATGGG
1 TTTTTAAGGA
37297153 TTTTTAAGG-
1 TTTTTAAGGA
*
37297162 TTTTTAAAGA
1 TTTTTAAGGA
*
37297172 TATTTTAAAGGC
1 T-TTTT-AAGGA
*
37297184 TTTTTAGGGTA
1 TTTTTAAGG-A
* *
37297195 TTTTAAAGGC
1 TTTTTAAGGA
* *
37297205 TTTTTAGGGTC
1 TTTTTAAGG-A
**
37297216 TTTTTAAACA
1 TTTTTAAGGA
* *
37297226 -ATTTAAAGA
1 TTTTTAAGGA
**
37297235 TTTTTTTATTGA
1 --TTTTTAAGGA
*
37297247 TTTTTTAGGA
1 TTTTTAAGGA
37297257 TTTTTAAGGTA
1 TTTTTAAGG-A
**
37297268 TTTTTAAATA
1 TTTTTAAGGA
37297278 TTTTTATA-G-
1 TTTTTA-AGGA
37297287 TTTTTATA-GA
1 TTTTTA-AGGA
*
37297297 TTTTTAAGAA
1 TTTTTAAGGA
* * *
37297307 ATTTGAA-AA
1 TTTTTAAGGA
*
37297316 TTTTTTTAGG-
1 -TTTTTAAGGA
37297326 TTTTTAAGAGA
1 TTTTTAAG-GA
*
37297337 TTTTTAATGA
1 TTTTTAAGGA
*
37297347 TTTTTAAGAA
1 TTTTTAAGGA
37297357 TTTTTAA-G-
1 TTTTTAAGGA
*
37297365 TTTCGTAAGGA
1 TTT-TTAAGGA
37297376 TTTTTAA-GA
1 TTTTTAAGGA
*
37297385 ---TTATGGA
1 TTTTTAAGGA
*
37297392 TTTTTAGGGA
1 TTTTTAAGGA
* *
37297402 CTTTTAAGTA
1 TTTTTAAGGA
*
37297412 TTTTTAATG-
1 TTTTTAAGGA
*
37297421 TTTTTTAGGA
1 TTTTTAAGGA
*
37297431 -TTTTAATGAA
1 TTTTTAA-GGA
*
37297441 TTTTAAAGGA
1 TTTTTAAGGA
* *
37297451 TTTTAAAAGA
1 TTTTTAAGGA
**
37297461 TTTGAAAGGA
1 TTTTTAAGGA
*
37297471 -TTTTAAGAA
1 TTTTTAAGGA
* *
37297480 TTTGTAAGGC
1 TTTTTAAGGA
* *
37297490 TTTTAAAAGGTTT
1 TTTT-TAAGG--A
*
37297503 TTTTTAAAGA
1 TTTTTAAGGA
37297513 TTTTT-AGG-
1 TTTTTAAGGA
*
37297521 TTCTTTAAAGA
1 TT-TTTAAGGA
*
37297532 -TTTTAATGA
1 TTTTTAAGGA
*
37297541 TTTTTTAGG-
1 TTTTTAAGGA
37297550 ---TTAA-GA
1 TTTTTAAGGA
* *
37297556 ATTTTAAGGT
1 TTTTTAAGGA
37297566 TTTTTATA--A
1 TTTTTA-AGGA
*
37297575 TATTATAAGGA
1 T-TTTTAAGGA
* * *
37297586 ATTTTGAGGG
1 TTTTTAAGGA
**
37297596 TTTTTGTGGA
1 TTTTTAAGGA
* *
37297606 CTTTTAAAGA
1 TTTTTAAGGA
37297616 TTTTTAA-GA
1 TTTTTAAGGA
*
37297625 TTTTAAAAGGA
1 TTTT-TAAGGA
*
37297636 TTTTTTAAAG-
1 -TTTTTAAGGA
37297646 TTTTTAAAAGG-
1 TTTTT--AAGGA
*
37297657 TTTTTAAGGTCT
1 TTTTTAAGG--A
37297669 TTTTTATA-GA
1 TTTTTA-AGGA
*
37297679 TTTTTAAGGT
1 TTTTTAAGGA
*
37297689 TTTTTATA-AA
1 TTTTTA-AGGA
*
37297699 TGTTTAAGGAA
1 TTTTTAAGG-A
** *
37297710 TGTGATAA--T
1 T-TTTTAAGGA
37297719 TTTTTAAGG-
1 TTTTTAAGGA
*
37297728 TTTTTATGGGA
1 TTTTTA-AGGA
37297739 TTTTTAAGGA
1 TTTTTAAGGA
*
37297749 -TTTTAATAGA
1 TTTTTAA-GGA
*
37297759 TTTTTAAAG-
1 TTTTTAAGGA
*
37297768 TTTTTAAAGCA
1 TTTTT-AAGGA
*
37297779 TTTTTAAGTA
1 TTTTTAAGGA
* *
37297789 TTTGTAAGCA
1 TTTTTAAGGA
* * *
37297799 TTCTTAAAGT
1 TTTTTAAGGA
*
37297809 TTTTTAAAG-
1 TTTTTAAGGA
*
37297818 TTAATTCAAGGTTTA
1 TT--TTTAAGG---A
*
37297833 TTTTGTTA-G-
1 TTTT-TAAGGA
*
37297842 TTCTTTAAAGA
1 TT-TTTAAGGA
37297853 TTTTTAAGGA
1 TTTTTAAGGA
37297863 TTTTATAA-GA
1 TTTT-TAAGGA
* *
37297873 TTTGTAAAGA
1 TTTTTAAGGA
37297883 TTTTTAA-GA
1 TTTTTAAGGA
*
37297892 TTTTTAAAGA
1 TTTTTAAGGA
37297902 TTTTTAAGG-
1 TTTTTAAGGA
* *
37297911 TTTTGTATGTA
1 TTTT-TAAGGA
37297922 TTTTTATA-GA
1 TTTTTA-AGGA
37297932 TTTTTAA--A
1 TTTTTAAGGA
* *
37297940 --GTTACGGA
1 TTTTTAAGGA
*
37297948 TTTTTAAGTA
1 TTTTTAAGGA
*
37297958 TTTATAA-GA
1 TTTTTAAGGA
* **
37297967 ATTTTAAAAA
1 TTTTTAAGGA
* *
37297977 ATTTTAAAGA
1 TTTTTAAGGA
37297987 TTTTTAAGG-
1 TTTTTAAGGA
*
37297996 TTTTGTAAGTCA
1 TTTT-TAAG-GA
*
37298008 -TTTTATGGA
1 TTTTTAAGGA
37298017 TTTTTAA--A
1 TTTTTAAGGA
* * *
37298025 -GTTTACGAA
1 TTTTTAAGGA
*
37298034 TTTTTAAGTA
1 TTTTTAAGGA
37298044 TTTTTAAGGA
1 TTTTTAAGGA
* *
37298054 TTTCTAAAG-
1 TTTTTAAGGA
*
37298063 TTTTTAAAGCA
1 TTTTT-AAGGA
*
37298074 -TTTTAAGTA
1 TTTTTAAGGA
*
37298083 TTTTTTTA-GA
1 -TTTTTAAGGA
**
37298093 TACTTAAGG-
1 TTTTTAAGGA
* *
37298102 TTTTTCATGA
1 TTTTTAAGGA
*
37298112 GTTTTTAGGGA
1 -TTTTTAAGGA
37298123 TTTTTAAGG-
1 TTTTTAAGGA
*
37298132 TTTTTAAAGAA
1 TTTTT-AAGGA
37298143 TTTTTAA
1 TTTTTAA
37298150 AGTTAAGGAG
Statistics
Matches: 1748, Mismatches: 473, Indels: 449
0.65 0.18 0.17
Matches are distributed among these distances:
5 1 0.00
6 49 0.03
7 9 0.01
8 21 0.01
9 320 0.18
10 973 0.56
11 272 0.16
12 84 0.05
13 15 0.01
14 2 0.00
15 2 0.00
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.51
Consensus pattern (10 bp):
TTTTTAAGGA
Found at i:37295914 original size:11 final size:11
Alignment explanation
Indices: 37295890--37295988 Score: 63
Period size: 11 Copynumber: 9.6 Consensus size: 11
37295880 TTTCTTATGA
37295890 ATTTTT-AA-G
1 ATTTTTAAAGG
37295899 ATTTTTAAAGG
1 ATTTTTAAAGG
*
37295910 A-TTTTCAAGG
1 ATTTTTAAAGG
* *
37295920 ACTTTTAAAAG
1 ATTTTTAAAGG
*
37295931 ATTTTCAAA-G
1 ATTTTTAAAGG
37295941 ATTTTTTAATA-G
1 A-TTTTTAA-AGG
37295953 ATTTTT-AAGG
1 ATTTTTAAAGG
*
37295963 A-TTTTAAAAG
1 ATTTTTAAAGG
*
37295973 ACTTTT-AAGG
1 ATTTTTAAAGG
37295983 -TTTTTA
1 ATTTTTA
37295989 TATATTTTTA
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
9 15 0.21
10 23 0.32
11 31 0.43
12 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.47
Consensus pattern (11 bp):
ATTTTTAAAGG
Found at i:37295966 original size:32 final size:31
Alignment explanation
Indices: 37295856--37295978 Score: 94
Period size: 32 Copynumber: 3.9 Consensus size: 31
37295846 GGTTTTTCTT
*
37295856 ATAGTTTTTTAAGATTTTTAAAG-TTTTCTT-
1 ATAGATTTTTAAGATTTTTAAAGATTTT-TTA
*
37295886 AT-GAATTTTTAAGATTTTTAAAGGA-TTTTCA
1 ATAG-ATTTTTAAGATTTTTAAA-GATTTTTTA
* * *
37295917 A-GGACTTTTAAAAGATTTTCAAAGATTTTTTA
1 ATAGA-TTTT-TAAGATTTTTAAAGATTTTTTA
* *
37295949 ATAGATTTTTAAGGATTTTAAAAGACTTTT
1 ATAGATTTTTAA-GATTTTTAAAGATTTTT
37295979 AAGGTTTTTA
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
29 1 0.01
30 21 0.28
31 14 0.19
32 36 0.49
33 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (31 bp):
ATAGATTTTTAAGATTTTTAAAGATTTTTTA
Found at i:37296009 original size:20 final size:20
Alignment explanation
Indices: 37295861--37296009 Score: 74
Period size: 21 Copynumber: 7.3 Consensus size: 20
37295851 TTCTTATAGT
*
37295861 TTTTTA-AGATTTTTAA-AG
1 TTTTTATAGATTTTTAAGAA
37295879 TTTTCT-TATGAATTTTTAAG-A
1 TTTT-TATA-G-ATTTTTAAGAA
* * *
37295900 TTTTTAAAGGATTTTCAAGGAC
1 TTTTTATA-GATTTTTAA-GAA
* * * *
37295922 TTTTAAAAGATTTTCAAAGAT
1 TTTTTATAGATTTT-TAAGAA
*
37295943 TTTTTAATAGATTTTTAAGGA
1 TTTTT-ATAGATTTTTAAGAA
* * * *
37295964 TTTTAAAAGACTTTTAAG-G
1 TTTTTATAGATTTTTAAGAA
*
37295983 TTTTTATATATTTTTAAGAA
1 TTTTTATAGATTTTTAAGAA
37296003 TTTTTAT
1 TTTTTAT
37296010 GTTTTTTTAG
Statistics
Matches: 98, Mismatches: 22, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
18 4 0.04
19 16 0.16
20 27 0.28
21 34 0.35
22 17 0.17
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTTTATAGATTTTTAAGAA
Found at i:37296518 original size:16 final size:15
Alignment explanation
Indices: 37296497--37296527 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
37296487 TTAAAAGATT
37296497 TTTAAGGATTATTAAG
1 TTTAAGGATT-TTAAG
37296513 TTTAAGGATTTTAAG
1 TTTAAGGATTTTAAG
37296528 GGTTTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.45
Consensus pattern (15 bp):
TTTAAGGATTTTAAG
Found at i:37296534 original size:87 final size:86
Alignment explanation
Indices: 37296383--37296564 Score: 201
Period size: 87 Copynumber: 2.1 Consensus size: 86
37296373 ACGCATTTTT
* * * ***
37296383 AAGGATTTTTTTGGTTTTTAAAGAATTTTAAAAGATTTTTATGTTTAAGGATTTTAATTTTTTTT
1 AAGGATTTTTATGGTTTTTAAAGAATTTTAAAAGATTATTAAGTTTAAGGATTTTAA--GGGTTT
37296448 TTATAGTTTTTGGAGGATTTTGA
64 TTATAGTTTTTGGAGGATTTTGA
* * *
37296471 AAGG-TTTTTATGTTTTTTAAA-AGATTTTTAAGGATTATTAAGTTTAAGGATTTTAAGGGTTTT
1 AAGGATTTTTATGGTTTTTAAAGA-ATTTTAAAAGATTATTAAGTTTAAGGATTTTAAGGGTTTT
* *
37296534 TATAGTTTTT-TATGGAATTT-A
65 TATAGTTTTTGGA-GGATTTTGA
37296555 AAGGATTTTT
1 AAGGATTTTT
37296565 TAAAAGATTC
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
84 6 0.08
85 25 0.31
86 1 0.01
87 44 0.55
88 4 0.05
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.54
Consensus pattern (86 bp):
AAGGATTTTTATGGTTTTTAAAGAATTTTAAAAGATTATTAAGTTTAAGGATTTTAAGGGTTTTT
ATAGTTTTTGGAGGATTTTGA
Found at i:37296712 original size:21 final size:20
Alignment explanation
Indices: 37296688--37296797 Score: 71
Period size: 21 Copynumber: 5.3 Consensus size: 20
37296678 TTTTAAAGAA
37296688 TTTTAATGGATTCTTAATGTT
1 TTTTAATGGATT-TTAATGTT
** *
37296709 TTTTAAAAGATTTGTAAAGGTT
1 TTTTAATGGATTT-T-AATGTT
* * *
37296731 TTTTTA-GGCTTTTTAAGGATT
1 TTTTAATGG-ATTTTAATG-TT
* * *
37296752 TTTT-ATGAATTTTTATGCT
1 TTTTAATGGATTTTAATGTT
37296771 TTTTAATGGATTTTATATGTT
1 TTTTAATGGATTTTA-ATGTT
37296792 TTTTAA
1 TTTTAA
37296798 GTTTAAGGTT
Statistics
Matches: 68, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
19 5 0.07
20 20 0.29
21 30 0.44
22 13 0.19
ACGTcount: A:0.25, C:0.03, G:0.15, T:0.57
Consensus pattern (20 bp):
TTTTAATGGATTTTAATGTT
Found at i:37297211 original size:21 final size:21
Alignment explanation
Indices: 37297143--37297219 Score: 88
Period size: 21 Copynumber: 3.7 Consensus size: 21
37297133 TATTTAAGAA
37297143 TTTTTATGGGT-TTTT-AAGG-
1 TTTTTA-GGGTATTTTAAAGGC
* *
37297162 TTTTTAAAGATATTTTAAAGGC
1 TTTTT-AGGGTATTTTAAAGGC
37297184 TTTTTAGGGTATTTTAAAGGC
1 TTTTTAGGGTATTTTAAAGGC
*
37297205 TTTTTAGGGTCTTTT
1 TTTTTAGGGTATTTT
37297220 TAAACAATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
19 7 0.14
20 5 0.10
21 32 0.65
22 5 0.10
ACGTcount: A:0.22, C:0.04, G:0.21, T:0.53
Consensus pattern (21 bp):
TTTTTAGGGTATTTTAAAGGC
Found at i:37297342 original size:19 final size:19
Alignment explanation
Indices: 37297318--37297381 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
37297308 TTTGAAAATT
37297318 TTTTTAGGTTTTTAAGAGA
1 TTTTTAGGTTTTTAAGAGA
*
37297337 TTTTTAATGATTTTTAAGA-A
1 TTTTT-A-GGTTTTTAAGAGA
* *
37297357 TTTTTAAGTTTCGTAAG-GA
1 TTTTTAGGTTT-TTAAGAGA
37297376 TTTTTA
1 TTTTTA
37297382 AGATTATGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 3 0.08
19 17 0.46
20 7 0.19
21 10 0.27
ACGTcount: A:0.28, C:0.02, G:0.16, T:0.55
Consensus pattern (19 bp):
TTTTTAGGTTTTTAAGAGA
Found at i:37297444 original size:18 final size:19
Alignment explanation
Indices: 37297403--37297495 Score: 66
Period size: 19 Copynumber: 4.8 Consensus size: 19
37297393 TTTTAGGGAC
* *
37297403 TTTTAAGTATTTTTAATG-T
1 TTTTAAGGA-TTTTAATGAA
*
37297422 TTTTTAGGATTTTAATGAA
1 TTTTAAGGATTTTAATGAA
*
37297441 TTTTAAAGGATTTTAA-AAGA
1 TTTT-AAGGATTTTAATGA-A
*
37297461 TTTGAAAGGATTTTAA-GAA
1 TTT-TAAGGATTTTAATGAA
*
37297480 TTTGTAAGGCTTTTAA
1 TTT-TAAGGATTTTAA
37297496 AAGGTTTTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
18 8 0.13
19 27 0.44
20 26 0.43
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.48
Consensus pattern (19 bp):
TTTTAAGGATTTTAATGAA
Found at i:37297454 original size:29 final size:30
Alignment explanation
Indices: 37297389--37297454 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
37297379 TTAAGATTAT
* *
37297389 GGATTTTTAGGGACTTTTAAGTATTTTTAA
1 GGATTTTTAGGGACTTTTAAGAATTTTAAA
* *
37297419 TGTTTTTTA-GGA-TTTTAATGAATTTTAAA
1 GGATTTTTAGGGACTTTTAA-GAATTTTAAA
37297448 GGATTTT
1 GGATTTT
37297455 AAAAGATTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
28 6 0.21
29 16 0.55
30 7 0.24
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.53
Consensus pattern (30 bp):
GGATTTTTAGGGACTTTTAAGAATTTTAAA
Found at i:37297640 original size:21 final size:21
Alignment explanation
Indices: 37297616--37297661 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
37297606 CTTTTAAAGA
37297616 TTTTT-AAGATTTTAAAAGGAT
1 TTTTTAAAGATTTTAAAAGG-T
*
37297637 TTTTTAAAGTTTTTAAAAGGT
1 TTTTTAAAGATTTTAAAAGGT
37297658 TTTT
1 TTTT
37297662 AAGGTCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (21 bp):
TTTTTAAAGATTTTAAAAGGT
Found at i:37297671 original size:22 final size:21
Alignment explanation
Indices: 37297625--37297703 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
37297615 ATTTTTAAGA
*
37297625 TTTTAAAAGGATTTTTTAAAG-T
1 TTTTAAAAGG--TTTTTAAGGTT
37297647 TTTTAAAAGGTTTTTAAGGTCT
1 TTTTAAAAGGTTTTTAAGGT-T
* * *
37297669 TTTTTATAGATTTTTAAGGTT
1 TTTTAAAAGGTTTTTAAGGTT
*
37297690 TTTTATAAATGTTT
1 TTTTA-AAAGGTTT
37297704 AAGGAATGTG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
20 8 0.17
21 5 0.11
22 33 0.72
ACGTcount: A:0.29, C:0.01, G:0.14, T:0.56
Consensus pattern (21 bp):
TTTTAAAAGGTTTTTAAGGTT
Found at i:37297688 original size:31 final size:30
Alignment explanation
Indices: 37297607--37297692 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 30
37297597 TTTTGTGGAC
* *
37297607 TTTTAAAGATTTTTAAGATTTTAAAAGGATT
1 TTTTAAAGATTTTTAAGGTTTT-TAAGGATT
*
37297638 TTTTAAAG-TTTTTAAAAGGTTTTTAAGGTCTT
1 TTTTAAAGATTTTT--AAGGTTTTTAAGG-ATT
*
37297670 TTTTATAGATTTTTAAGGTTTTT
1 TTTTAAAGATTTTTAAGGTTTTT
37297693 TATAAATGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
30 5 0.11
31 21 0.45
32 16 0.34
33 5 0.11
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (30 bp):
TTTTAAAGATTTTTAAGGTTTTTAAGGATT
Found at i:37297866 original size:30 final size:29
Alignment explanation
Indices: 37297847--37297904 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
37297837 GTTAGTTCTT
37297847 TAAAGATTTTTAAGGATTTTATAAGATTTG
1 TAAAGATTTTTAA-GATTTTATAAGATTTG
37297877 TAAAGATTTTTAAGATTTT-TAAAGATTT
1 TAAAGATTTTTAAGATTTTAT-AAGATTT
37297905 TTAAGGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 1 0.04
29 13 0.48
30 13 0.48
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (29 bp):
TAAAGATTTTTAAGATTTTATAAGATTTG
Found at i:37298080 original size:86 final size:84
Alignment explanation
Indices: 37297862--37298077 Score: 265
Period size: 85 Copynumber: 2.5 Consensus size: 84
37297852 ATTTTTAAGG
* * * *
37297862 ATTTTATAAG-ATTTGTAAAGATTTTTAAGATTTTTAAAGATTTTTAAGGTTTTGTATGTATTTT
1 ATTTT-TAAGTATTTATAAGGATTTTAAAG-TTTTTAAAGATTTTTAAGGTTTTGTAAGTATTTT
*
37297926 TATAGATTTTTAAAGTTACGG
64 TATAGATTTTTAAAGTTACGA
* **
37297947 ATTTTTAAGTATTTATAAGAATTTTAAAAAATTTTAAAGATTTTTAAGGTTTTGTAAGTCA-TTT
1 ATTTTTAAGTATTTATAAGGATTTT-AAAGTTTTTAAAGATTTTTAAGGTTTTGTAAGT-ATTTT
*
37298011 TATGGATTTTTAAAGTTTACGA
64 TATAGATTTTTAAAG-TTACGA
*
37298033 ATTTTTAAGTATTTTTAAGGATTTCTAAAGTTTTTAAAGCATTTT
1 ATTTTTAAGTATTTATAAGGATTT-TAAAGTTTTTAAAG-ATTTT
37298078 AAGTATTTTT
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
84 4 0.04
85 61 0.54
86 41 0.37
87 6 0.05
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.51
Consensus pattern (84 bp):
ATTTTTAAGTATTTATAAGGATTTTAAAGTTTTTAAAGATTTTTAAGGTTTTGTAAGTATTTTTA
TAGATTTTTAAAGTTACGA
Found at i:37299230 original size:20 final size:20
Alignment explanation
Indices: 37299207--37299245 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37299197 AAAAATGATT
37299207 TAAAA-AACTTTAAAAATCTA
1 TAAAATAAC-TTAAAAATCTA
*
37299227 TAAAATCACTTAAAAATCT
1 TAAAATAACTTAAAAATCT
37299246 TTTGAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATAACTTAAAAATCTA
Found at i:37299580 original size:21 final size:22
Alignment explanation
Indices: 37299507--37299581 Score: 70
Period size: 21 Copynumber: 3.5 Consensus size: 22
37299497 CAAAAGACTT
* *
37299507 TAAAAATCTTTTAAAAATAACT
1 TAAAAATCTTTTAAAAATACCA
37299529 TACAAAATC--TTAAAAAT-CCA
1 TA-AAAATCTTTTAAAAATACCA
*
37299549 T-AAAATAC-TTTGAAAATACCA
1 TAAAAAT-CTTTTAAAAATACCA
37299570 TAAAAATCTTTT
1 TAAAAATCTTTT
37299582 GAAATACATG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
18 5 0.11
19 1 0.02
20 9 0.20
21 13 0.30
22 10 0.23
23 6 0.14
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.33
Consensus pattern (22 bp):
TAAAAATCTTTTAAAAATACCA
Found at i:37299659 original size:11 final size:10
Alignment explanation
Indices: 37299593--37299678 Score: 50
Period size: 10 Copynumber: 8.3 Consensus size: 10
37299583 AAATACATGA
*
37299593 AAAAAACCTT
1 AAAAATCCTT
*
37299603 AAAAATGCTT
1 AAAAATCCTT
*
37299613 -AGAATGACCTT
1 AAAAAT--CCTT
*
37299624 AAACATCCTT
1 AAAAATCCTT
*
37299634 GAAAAGAT-CAT
1 -AAAA-ATCCTT
37299645 AAAAATCCTT
1 AAAAATCCTT
*
37299655 GAAAATGCCTT
1 AAAAAT-CCTT
*
37299666 AAAAATTCTT
1 AAAAATCCTT
37299676 AAA
1 AAA
37299679 TTCGTAATAA
Statistics
Matches: 57, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
9 6 0.11
10 29 0.51
11 17 0.30
12 5 0.09
ACGTcount: A:0.49, C:0.16, G:0.08, T:0.27
Consensus pattern (10 bp):
AAAAATCCTT
Found at i:37299668 original size:21 final size:22
Alignment explanation
Indices: 37299598--37299671 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
37299588 CATGAAAAAA
* *
37299598 ACCTTAAAAATGCTT-AGAATG
1 ACCTTAAAAATCCTTGAAAATG
*
37299619 ACCTTAAACATCCTTGAAAA-G
1 ACCTTAAAAATCCTTGAAAATG
* *
37299640 ATCATAAAAATCCTTGAAAATG
1 ACCTTAAAAATCCTTGAAAATG
37299662 -CCTTAAAAAT
1 ACCTTAAAAAT
37299672 TCTTAAATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 39 0.91
22 4 0.09
ACGTcount: A:0.46, C:0.18, G:0.09, T:0.27
Consensus pattern (22 bp):
ACCTTAAAAATCCTTGAAAATG
Found at i:37299924 original size:10 final size:10
Alignment explanation
Indices: 37299861--37299924 Score: 51
Period size: 10 Copynumber: 6.3 Consensus size: 10
37299851 TTAAAAAAAG
*
37299861 CTTAAAAAAC
1 CTTAAAAATC
*
37299871 CTTAAAAATT
1 CTTAAAAATC
*
37299881 CAT-AAAATC
1 CTTAAAAATC
37299890 ACTTAAAAATC
1 -CTTAAAAATC
*
37299901 TTTGAAAACA-C
1 CTT-AAAA-ATC
37299912 CTTAAAAATC
1 CTTAAAAATC
37299922 CTT
1 CTT
37299925 TGAAATATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
9 6 0.14
10 22 0.52
11 13 0.31
12 1 0.02
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.30
Consensus pattern (10 bp):
CTTAAAAATC
Found at i:37300063 original size:18 final size:19
Alignment explanation
Indices: 37300040--37300078 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
37300030 TAATAAATAA
37300040 TTAAAA-AATAAAAAACCC
1 TTAAAAGAATAAAAAACCC
*
37300058 TTAAAAGTATAAAAAACCC
1 TTAAAAGAATAAAAAACCC
37300077 TT
1 TT
37300079 CAAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.59, C:0.15, G:0.03, T:0.23
Consensus pattern (19 bp):
TTAAAAGAATAAAAAACCC
Found at i:37300167 original size:10 final size:10
Alignment explanation
Indices: 37300152--37300228 Score: 55
Period size: 10 Copynumber: 7.4 Consensus size: 10
37300142 CATAAATAAA
37300152 AAAAATCCTT
1 AAAAATCCTT
*
37300162 AAAAATCCTC
1 AAAAATCCTT
**
37300172 AAAAAGACTT
1 AAAAATCCTT
*
37300182 GAAAAATCTTTT
1 -AAAAATC-CTT
*
37300194 AAAAATGACTT
1 AAAAAT-CCTT
* *
37300205 AAAAAACTTT
1 AAAAATCCTT
*
37300215 AAAAATCCAT
1 AAAAATCCTT
37300225 AAAA
1 AAAA
37300229 TCCCTCGAAA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
10 29 0.59
11 18 0.37
12 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (10 bp):
AAAAATCCTT
Found at i:37300187 original size:32 final size:32
Alignment explanation
Indices: 37300151--37300263 Score: 74
Period size: 32 Copynumber: 3.6 Consensus size: 32
37300141 ACATAAATAA
37300151 AAAAAATCCTTAAAAAT-CCTCAAAAAGACTTG
1 AAAAAATCCTTAAAAATCCCTCAAAAA-ACTTG
* ** *
37300183 -AAAAATCTTTTAAAAATGACTTAAAAAACTT-
1 AAAAAATC-CTTAAAAATCCCTCAAAAAACTTG
* * ***
37300214 TAAAAATCCAT-AAAATCCCTCGAAAATTTTTG
1 AAAAAATCCTTAAAAATCCCTC-AAAAAACTTG
*
37300246 AAAACA-CCTTAAAAATCC
1 AAAAAATCCTTAAAAATCC
37300264 ATTGAAATTC
Statistics
Matches: 61, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
30 7 0.11
31 17 0.28
32 30 0.49
33 7 0.11
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (32 bp):
AAAAAATCCTTAAAAATCCCTCAAAAAACTTG
Found at i:37300456 original size:11 final size:11
Alignment explanation
Indices: 37300442--37300500 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
37300432 AAAAATCTCT
37300442 AAAAAACCTTA
1 AAAAAACCTTA
* *
37300453 AAAAAAACTTT
1 AAAAAACCTTA
* *
37300464 AAAAATCTTTTA
1 AAAAAAC-CTTA
37300476 AAAATAA-CTT-
1 AAAA-AACCTTA
37300486 AAAAAACCTTA
1 AAAAAACCTTA
37300497 AAAA
1 AAAA
37300501 TTCATAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
9 2 0.06
10 7 0.19
11 20 0.56
12 6 0.17
13 1 0.03
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (11 bp):
AAAAAACCTTA
Found at i:37300464 original size:32 final size:32
Alignment explanation
Indices: 37300428--37300520 Score: 93
Period size: 32 Copynumber: 2.9 Consensus size: 32
37300418 CTTCAAATTC
37300428 CTTTAAAAATCTCTAAAAAACCTTAAAAAAAA
1 CTTTAAAAATCTCTAAAAAACCTTAAAAAAAA
* *
37300460 CTTTAAAAATCTTTTAAAAATAACTT--AAAAAA
1 CTTTAAAAATC-TCTAAAAA-ACCTTAAAAAAAA
* **
37300492 CCTTAAAAAT-TCATAAAATCCCTTAAAAA
1 CTTTAAAAATCTC-TAAAAAACCTTAAAAA
37300521 TAATTGAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
30 4 0.08
31 5 0.10
32 29 0.59
33 7 0.14
34 4 0.08
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (32 bp):
CTTTAAAAATCTCTAAAAAACCTTAAAAAAAA
Found at i:37300699 original size:21 final size:23
Alignment explanation
Indices: 37300675--37300724 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
37300665 ACTTCAAATT
37300675 CCTTAAAATATCCCT-AAAA-AA
1 CCTTAAAATATCCCTGAAAAGAA
*
37300696 CCTT-AAATATCCTTGAAAAGAA
1 CCTTAAAATATCCCTGAAAAGAA
37300718 -CTTAAAA
1 CCTTAAAA
37300725 ATGCATATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 9 0.36
21 11 0.44
22 5 0.20
ACGTcount: A:0.50, C:0.20, G:0.04, T:0.26
Consensus pattern (23 bp):
CCTTAAAATATCCCTGAAAAGAA
Found at i:37301107 original size:31 final size:31
Alignment explanation
Indices: 37301059--37301146 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 31
37301049 AAAAATCCAT
*
37301059 AAAATGCTTTGAGAATCCTTGAAAACACCTTA
1 AAAATCCTTTGA-AATCCTTGAAAACACCTTA
* *
37301091 AAAATCCTTTGAAATCCTTGAAAATACTTTA
1 AAAATCCTTTGAAATCCTTGAAAACACCTTA
* * *
37301122 AAAATTCTTTCAAATCCAT-AAAACA
1 AAAATCCTTTGAAATCCTTGAAAACA
37301147 AACCTTTAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
30 5 0.10
31 33 0.67
32 11 0.22
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (31 bp):
AAAATCCTTTGAAATCCTTGAAAACACCTTA
Found at i:37301375 original size:22 final size:21
Alignment explanation
Indices: 37301346--37301398 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
37301336 CTTAAAAATG
*
37301346 CTTT-AAAATTCATGAAAAAAA
1 CTTTAAAAATGCAT-AAAAAAA
* *
37301367 CTTTAAAAATGCATCAAAAGA
1 CTTTAAAAATGCATAAAAAAA
37301388 CTTTAAAAATG
1 CTTTAAAAATG
37301399 TTTTAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.28
Consensus pattern (21 bp):
CTTTAAAAATGCATAAAAAAA
Found at i:37301554 original size:11 final size:10
Alignment explanation
Indices: 37301504--37302114 Score: 62
Period size: 10 Copynumber: 60.1 Consensus size: 10
37301494 CTTAGTATGA
*
37301504 CCTTAAACAT
1 CCTTAAAAAT
*
37301514 ACTTAAAAAGAT
1 CCTT-AAAA-AT
*
37301526 CC-TAAAATT
1 CCTTAAAAAT
*
37301535 CCTTGAAAAT
1 CCTTAAAAAT
37301545 GCCTTAAAAAGT
1 -CCTTAAAAA-T
* *
37301557 ACTTAAAATT
1 CCTTAAAAAT
*
37301567 GNCTTAAAAA-
1 -CCTTAAAAAT
*
37301577 CATCTAAAAAT
1 CCT-TAAAAAT
*
37301588 CCTTCAAAAT
1 CCTTAAAAAT
37301598 CCTTGAAAAAT
1 CCTT-AAAAAT
*
37301609 -CTCTAAAAAG
1 CCT-TAAAAAT
*
37301619 CCTTAAATAT
1 CCTTAAAAAT
* **
37301629 CATTTGAAGGA-
1 C-CTT-AAAAAT
*
37301640 CCTTACAAA-
1 CCTTAAAAAT
37301649 CGCTTAAAAAT
1 C-CTTAAAAAT
37301660 -CTATATAAAA-
1 CCT-TA-AAAAT
*
37301670 ----AAAAAA
1 CCTTAAAAAT
*
37301676 CCTTAACAAT
1 CCTTAAAAAT
37301686 CCTTAAAAA-
1 CCTTAAAAAT
37301695 CACTTTAAAAAT
1 C-C-TTAAAAAT
*
37301707 -GTTAAAAGAAT
1 CCTT-AAA-AAT
* *
37301718 GACTTAAAAAA
1 -CCTTAAAAAT
* *
37301729 CTTTCAAAAT
1 CCTTAAAAAT
* *
37301739 CCAT-GAAAT
1 CCTTAAAAAT
37301748 CACTTAAAAAT
1 C-CTTAAAAAT
37301759 CCTTGAAAACA-
1 CCTT-AAAA-AT
*
37301770 CCTAAAAAAT
1 CCTTAAAAAT
* **
37301780 CTTTTGAAAT
1 CCTTAAAAAT
*
37301790 -CTATGAGAAAAA
1 CCT-T-A-AAAAT
*
37301802 CCTTAAACAT
1 CCTTAAAAAT
*
37301812 GCTT-AAAAT
1 CCTTAAAAAT
*
37301821 GACCTTAAACAT
1 --CCTTAAAAAT
*
37301833 CCTTAAAAAGA
1 CCTTAAAAA-T
* *
37301844 CCCTAAGAAT
1 CCTTAAAAAT
*
37301854 CCTTGAAAAT
1 CCTTAAAAAT
*
37301864 GACTTAAAAAT
1 -CCTTAAAAAT
** *
37301875 TTTTTAAAAT
1 CCTTAAAAAT
* *
37301885 TCGTAATAAAT
1 CCTTAA-AAAT
**
37301896 AATTAAGAAAT
1 CCTTAA-AAAT
37301907 --T-AAAAAT
1 CCTTAAAAAT
37301914 CCCTTAAAAA-
1 -CCTTAAAAAT
* *
37301924 CATAAAAAAT
1 CCTTAAAAAT
* * * *
37301934 ACATCAAATT
1 CCTTAAAAAT
37301944 CCTTGAAAAAT
1 CCTT-AAAAAT
*
37301955 CCTTAAAAAA
1 CCTTAAAAAT
*
37301965 CCTTAAATAT
1 CCTTAAAAAT
37301975 CCTTAAAAGGA-
1 CCTTAAAA--AT
37301986 CC-TAAAAAT
1 CCTTAAAAAT
*
37301995 GCTTAAAAAT
1 CCTTAAAAAT
*
37302005 CTTTGAAAAA-
1 CCTT-AAAAAT
37302015 ----AAAAA-
1 CCTTAAAAAT
37302020 CCTTAAAAAT
1 CCTTAAAAAT
*
37302030 GCTTCAAAAGA-
1 CCTT-AAAA-AT
*
37302041 CTTTAAAAAT
1 CCTTAAAAAT
*
37302051 CTTTCAAAAAT
1 CCTT-AAAAAT
*
37302062 AACTTACAAAA-
1 -CCTTA-AAAAT
*
37302073 GCTTAAAAAT
1 CCTTAAAAAT
*
37302083 CCAT-AAAAT
1 CCTTAAAAAT
* *
37302092 ACTTTAAAAACA
1 -CCTTAAAAA-T
37302104 CCTTAAAAAT
1 CCTTAAAAAT
37302114 C
1 C
37302115 TTTTGAAATG
Statistics
Matches: 422, Mismatches: 109, Indels: 140
0.63 0.16 0.21
Matches are distributed among these distances:
5 9 0.02
6 1 0.00
7 4 0.01
8 3 0.01
9 47 0.11
10 185 0.44
11 142 0.34
12 27 0.06
13 4 0.01
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.27
Consensus pattern (10 bp):
CCTTAAAAAT
Found at i:37301991 original size:20 final size:20
Alignment explanation
Indices: 37301797--37302114 Score: 84
Period size: 21 Copynumber: 15.8 Consensus size: 20
37301787 AATCTATGAG
* *
37301797 AAAAACCTTAAACATGCTTA
1 AAAAACCTTAAAAATCCTTA
* *
37301817 AAATGACCTTAAACATCCTTA
1 AAA-AACCTTAAAAATCCTTA
* *
37301838 AAAAGACCCTAAGAATCCTTGA
1 AAAA-ACCTTAAAAATCCTT-A
* ** *
37301860 AAATGA-CTTAAAAATTTTTT
1 AAA-AACCTTAAAAATCCTTA
** * **
37301880 AAAATTCGTAATAAATAATTA
1 AAAAACCTTAA-AAATCCTTA
*
37301901 AGAAA--TTAAAAATCCCTT-
1 AAAAACCTTAAAAAT-CCTTA
* * * * *
37301919 AAAAACATAAAAAATACATC
1 AAAAACCTTAAAAATCCTTA
**
37301939 AAATTCCTTGAAAAATCCTTA
1 AAAAACCTT-AAAAATCCTTA
*
37301960 AAAAACCTTAAATATCCTTA
1 AAAAACCTTAAAAATCCTTA
* *
37301980 AAAGGACC-TAAAAATGCTTA
1 AAA-AACCTTAAAAATCCTTA
* * *
37302000 AAAATCTTTGAAAA-----A
1 AAAAACCTTAAAAATCCTTA
*
37302015 AAAAACCTTAAAAATGCTTCA
1 AAAAACCTTAAAAATCCTT-A
* * *
37302036 AAAGACTTTAAAAATCTTTCA
1 AAAAACCTTAAAAATCCTT-A
* *
37302057 AAAATAACTTACAAAA-GCTTA
1 AAAA-ACCTTA-AAAATCCTTA
* * *
37302078 AAAATCCAT-AAAATACTTTA
1 AAAAACCTTAAAAAT-CCTTA
37302098 AAAACACCTTAAAAATC
1 AAAA-ACCTTAAAAATC
37302115 TTTTGAAATG
Statistics
Matches: 210, Mismatches: 63, Indels: 49
0.65 0.20 0.15
Matches are distributed among these distances:
15 12 0.06
18 12 0.06
19 8 0.04
20 62 0.30
21 96 0.46
22 16 0.08
23 4 0.02
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAAACCTTAAAAATCCTTA
Found at i:37302117 original size:21 final size:20
Alignment explanation
Indices: 37301944--37302117 Score: 78
Period size: 20 Copynumber: 8.7 Consensus size: 20
37301934 ACATCAAATT
*
37301944 CCTTGAAAAATCCTTAAAAAA
1 CCTT-AAAAATCTTTAAAAAA
* * *
37301965 CCTTAAATATCCTTAAAAGGA
1 CCTTAAAAATCTTTAAAA-AA
*
37301986 CC-TAAAAATGC-TTAAAAAT
1 CCTTAAAAAT-CTTTAAAAAA
* *
37302005 CTTTGAAAA-----AAAAAA
1 CCTTAAAAATCTTTAAAAAA
* *
37302020 CCTTAAAAATGCTTCAAAAGA
1 CCTTAAAAAT-CTTTAAAAAA
*
37302041 CTTTAAAAATCTTTCAAAAATA
1 CCTTAAAAATCTTT-AAAAA-A
* * *
37302063 ACTTACAAAAGC-TTAAAAAT
1 CCTTA-AAAATCTTTAAAAAA
*
37302083 CCAT-AAAATACTTTAAAAACA
1 CCTTAAAAAT-CTTTAAAAA-A
37302104 CCTTAAAAATCTTT
1 CCTTAAAAATCTTT
37302118 TGAAATGCAT
Statistics
Matches: 114, Mismatches: 23, Indels: 32
0.67 0.14 0.19
Matches are distributed among these distances:
15 12 0.11
18 4 0.04
19 2 0.02
20 42 0.37
21 38 0.33
22 11 0.10
23 5 0.04
ACGTcount: A:0.51, C:0.17, G:0.05, T:0.28
Consensus pattern (20 bp):
CCTTAAAAATCTTTAAAAAA
Found at i:37302359 original size:31 final size:31
Alignment explanation
Indices: 37302297--37302365 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
37302287 AAATCTCTAA
* * * *
37302297 AAAAAT-CTTAAATATCCCTAAAAGGACCTT
1 AAAAATGCTTAAAAATCCATAAAAGAAACTT
*
37302327 AAAAATGCTTAAAAATCCATAAAATAAACTT
1 AAAAATGCTTAAAAATCCATAAAAGAAACTT
37302358 AAAAATGC
1 AAAAATGC
37302366 GTCGAAAGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.54, C:0.16, G:0.06, T:0.25
Consensus pattern (31 bp):
AAAAATGCTTAAAAATCCATAAAAGAAACTT
Found at i:37302644 original size:20 final size:21
Alignment explanation
Indices: 37302619--37302664 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37302609 AAATCTGAGG
*
37302619 AAAATCTCTA-AAGAACCTTA
1 AAAATCTCTAGAAGAACCTCA
* *
37302639 AAAATCTTTAGAAGGACCTCA
1 AAAATCTCTAGAAGAACCTCA
37302660 AAAAT
1 AAAAT
37302665 GCTTAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.50, C:0.17, G:0.09, T:0.24
Consensus pattern (21 bp):
AAAATCTCTAGAAGAACCTCA
Found at i:37303015 original size:21 final size:20
Alignment explanation
Indices: 37302980--37303035 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
37302970 AAAGAACCTT
* *
37302980 AAAAATACTTAAAAATTCATC
1 AAAAA-ACTTTAAAATACATC
*
37303001 AAAAAACCTTTAAAATACTTC
1 AAAAAA-CTTTAAAATACATC
*
37303022 AAAAGACTTTAAAA
1 AAAAAACTTTAAAA
37303036 ATCCTTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 9 0.30
21 21 0.70
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAAACTTTAAAATACATC
Found at i:37303036 original size:21 final size:22
Alignment explanation
Indices: 37302988--37303037 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
37302978 TTAAAAATAC
*
37302988 TTAAAAATTCATCAAAAAACCT
1 TTAAAAATACATCAAAAAACCT
* *
37303010 TT-AAAATACTTCAAAAGA-CT
1 TTAAAAATACATCAAAAAACCT
37303030 TTAAAAAT
1 TTAAAAAT
37303038 CCTTTAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 18 0.75
22 2 0.08
ACGTcount: A:0.54, C:0.14, G:0.02, T:0.30
Consensus pattern (22 bp):
TTAAAAATACATCAAAAAACCT
Found at i:37303036 original size:31 final size:30
Alignment explanation
Indices: 37302968--37303099 Score: 99
Period size: 31 Copynumber: 4.2 Consensus size: 30
37302958 TAAATATCCC
* *
37302968 TAAAAGAACCTTAAAAATACTTAAAA-ATTCAT
1 TAAAA-AACCTTTAAAATACTTAAAAGA--CCT
* *
37303000 CAAAAAACCTTTAAAATACTTCAAAAGACTT
1 TAAAAAACCTTTAAAATACTT-AAAAGACCT
*
37303031 TAAAAATCCTTTAAACATAACTTACAAA-ACCT
1 TAAAAAACCTTTAAA-AT-ACTTA-AAAGACCT
* *
37303063 TAAAAATCC-GTAAAATACTTTGAAAAGACCT
1 TAAAAAACCTTTAAAATAC-TT-AAAAGACCT
37303094 TAAAAA
1 TAAAAA
37303100 TCTTTTGAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
29 2 0.02
30 7 0.08
31 45 0.53
32 23 0.27
33 8 0.09
ACGTcount: A:0.53, C:0.17, G:0.04, T:0.27
Consensus pattern (30 bp):
TAAAAAACCTTTAAAATACTTAAAAGACCT
Found at i:37303086 original size:653 final size:659
Alignment explanation
Indices: 37301761--37303305 Score: 2156
Period size: 653 Copynumber: 2.3 Consensus size: 659
37301751 TTAAAAATCC
* * * * * * *
37301761 TTGAAAACACCTAAAAAATCTTTTGAAATCTATGAGAAAAACCTTAAACATGCTTAAAATGACCT
1 TTGAAAACACCTTAAAAATCTTTTGAAATCCATGAAAAAAAACTTAAAAATGATTAGAATGACCT
* * * * **
37301826 TAAACATCCTTAAAAA-GACCCTAAGAATCCTTGAAAATGACTTAAAAATTTTTTAAAATTCGTA
66 TAAACATCCTTAAAAAGGA-CCTAAAAATACTTGAAAATGCCTTAAAAAATCCTTAAAATTCGTA
* * *
37301890 ATAAATAATTAAGAAATTAAAAATCCCTTAAAAACATAAAAAATACATCAAATTCCTTGAAAAAT
130 ATAAATAATTAAGAAATTAAAAATCCCTTAAAAACATAAAAAATCCTTCAAAATCCTTGAAAAAT
*
37301955 C-CTTAAAAAACCTTAAATATCCTTAAAAGGACCTAAAAATGCTTAAAAATCTTTGAAAAAAAAA
195 CTC-T-AAAAACCTTAAATATCCTTAGAAGGACCTAAAAATGCTTAAAAATC-TTGAAAAAAAAA
* ** * * *
37302019 ACCTTAAAAATGCTTCAAAAGACTTTAAAAATCTTTCAAAAATAACTTACAAAAGCTTAAAAATC
257 AACTTAAAAACCCTTAAAAAGACTTTAAAAATCTTTCAAAAATAACTTACAAAACCGTAAAAATC
* *
37302084 CATAAAATACTTTAAAAACACCTTAAAAATCTTTTGAAATGCATGATAAAAAACTTAAAAAATGC
322 C-----ATAC--TAAAAACACCTTAAAAATCCTTTGAAATCCATGATAAAAAACTTAAAAAATGC
* * ** **
37302149 TTAGAATGACCTTAAACATCTTTAAAAGGATCCTAAAAATCCTTAAAAACGCCTTAAAATTTTTT
380 TTAGAATGACCTTAAACATCTTTAAAAGGAGCATAAAAATCCTTAAAAACGCCTTAAAAAATCCT
*
37302214 TAAAATTCGTAATAAATAACTATGAAAATTAAAAATTCCTTAAAAACATAAAAAAACCTTTAAAT
445 TAAAATTCGTAATAAATAACTATGAAAATTAAAAATCCCTTAAAAACATAAAAAAACCTTTAAAT
* *
37302279 TTATTGAAAAATCTCTAAAAAAATCTTAAATATCCCTAAAAGGACCTTAAAAATGCTTAAAAATC
510 TTATTGAAAAATCTCTAAAAAAATCTTAAATATCCCTAAAAGAACCTTAAAAATACTTAAAAATC
* * *
37302344 CATAAAATAAACTTAAAAATGCGTCGAAAGACTTTAAAAACTCTTTAAACATAACTTACAAAATC
575 CATAAAATAAACTTAAAAATACGTCAAAAGACTTTAAAAACTCTTTAAACATAACTTACAAAACC
37302409 TTAAAAATCCGTAAAATACT
640 TTAAAAATCCGTAAAATACT
* * *
37302429 TTGAAAATACCTTAAAATTTTTTTGAAATCCATGAAAAAAAACTTAAAAATGATTAGAATGACCT
1 TTGAAAACACCTTAAAAATCTTTTGAAATCCATGAAAAAAAACTTAAAAATGATTAGAATGACCT
* *
37302494 TAAACATCCTTAAAAAGGTCCTAAAAATACTTGGAAATGCCTTAAAAAATCCTTAAAATTCGTAA
66 TAAACATCCTTAAAAAGGACCTAAAAATACTTGAAAATGCCTTAAAAAATCCTTAAAATTCGTAA
*
37302559 TAAATAATTAAAGAAATTAAAAATCCCTTCAAAACATAAAAAATCCTTCAAAAT-C-TGAGGAAA
131 TAAATAATT-AAGAAATTAAAAATCCCTTAAAAACATAAAAAATCCTTCAAAATCCTTGA--AAA
* *
37302622 ATCTCTAAAGAACCTTAAAAATCTTTAGAAGGACCTCAAAAATGCTTAAAAATC-T-AAAAAAAA
193 ATCTCTAAA-AACCTTAAATATCCTTAGAAGGACCT-AAAAATGCTTAAAAATCTTGAAAAAAAA
* *
37302685 AAACTTAATAACCCTTAAAAAGACTTTAAAAATCTTTTAAAAATAACTTAC-AAACCGTAAAAAT
256 AAACTTAAAAACCCTTAAAAAGACTTTAAAAATCTTTCAAAAATAACTTACAAAACCGTAAAAAT
* *
37302749 -C-TAC-AAAATCA-CTTAAAAATCCTTTGAAA-CCTATGATAAAAACCTT-AAAAATGCTTAGA
321 CCATACTAAAAACACCTTAAAAATCCTTTGAAATCC-ATGATAAAAAACTTAAAAAATGCTTAGA
* *
37302808 ATGACCTTAAACATCTTTAAAAGGAGCAT-AAAATCCTTGAAAATGCCTTAAAAAAATCCTTAAA
385 ATGACCTTAAACATCTTTAAAAGGAGCATAAAAATCCTTAAAAACGCCTT-AAAAAATCCTTAAA
* *
37302872 ATTCGTAATAAATAGCTGA-GAAAATTAAAAATCCCTTAAAAACATAAAAAATCCTTTAAATTTA
449 ATTCGTAATAAATAACT-ATGAAAATTAAAAATCCCTTAAAAACATAAAAAAACCTTTAAATTTA
* *
37302936 TTGAAAAATCTCT-AAAAATTCTTAAATATCCCTAAAAGAACCTTAAAAATACTTAAAAATTCAT
513 TTGAAAAATCTCTAAAAAAATCTTAAATATCCCTAAAAGAACCTTAAAAATACTTAAAAATCCAT
* * *
37303000 CAAAA-AACCTTTAAAATACTTCAAAAGACTTTAAAAA-TCCTTTAAACATAACTTACAAAACCT
578 -AAAATAAACTTAAAAATACGTCAAAAGACTTTAAAAACT-CTTTAAACATAACTTACAAAACCT
37303063 TAAAAATCCGTAAAATACT
641 TAAAAATCCGTAAAATACT
*
37303082 TTGAAAAGACCTTAAAAATCTTTTGAAATCCATGAAAAAAAACTTAAAAATGATTAGAATGACCT
1 TTGAAAACACCTTAAAAATCTTTTGAAATCCATGAAAAAAAACTTAAAAATGATTAGAATGACCT
* *
37303147 TAAACATCCTTAAACAGGACCTAAAAATACTTGAAAATGCCTTAGAAAATCCTTAAAATTCGTAA
66 TAAACATCCTTAAAAAGGACCTAAAAATACTTGAAAATGCCTTAAAAAATCCTTAAAATTCGTAA
* * *
37303212 TAAATAATTAAGAAAATTAAAAATTCAC-TAAAAATATAAAAAATCTTTCAAAATCCTTGAAAAA
131 TAAATAATTAAG-AAATTAAAAA-TCCCTTAAAAACATAAAAAATCCTTCAAAATCCTTGAAAAA
*
37303276 TCTTTAAAACACCTTAAATATCCTTAGAAG
194 TCTCTAAAA-ACCTTAAATATCCTTAGAAG
37303306 TGTTGGTTCC
Statistics
Matches: 788, Mismatches: 72, Indels: 49
0.87 0.08 0.05
Matches are distributed among these distances:
652 5 0.01
653 328 0.42
654 131 0.17
655 34 0.04
656 6 0.01
659 3 0.00
665 1 0.00
666 11 0.01
667 56 0.07
668 124 0.16
669 71 0.09
670 18 0.02
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.28
Consensus pattern (659 bp):
TTGAAAACACCTTAAAAATCTTTTGAAATCCATGAAAAAAAACTTAAAAATGATTAGAATGACCT
TAAACATCCTTAAAAAGGACCTAAAAATACTTGAAAATGCCTTAAAAAATCCTTAAAATTCGTAA
TAAATAATTAAGAAATTAAAAATCCCTTAAAAACATAAAAAATCCTTCAAAATCCTTGAAAAATC
TCTAAAAACCTTAAATATCCTTAGAAGGACCTAAAAATGCTTAAAAATCTTGAAAAAAAAAAACT
TAAAAACCCTTAAAAAGACTTTAAAAATCTTTCAAAAATAACTTACAAAACCGTAAAAATCCATA
CTAAAAACACCTTAAAAATCCTTTGAAATCCATGATAAAAAACTTAAAAAATGCTTAGAATGACC
TTAAACATCTTTAAAAGGAGCATAAAAATCCTTAAAAACGCCTTAAAAAATCCTTAAAATTCGTA
ATAAATAACTATGAAAATTAAAAATCCCTTAAAAACATAAAAAAACCTTTAAATTTATTGAAAAA
TCTCTAAAAAAATCTTAAATATCCCTAAAAGAACCTTAAAAATACTTAAAAATCCATAAAATAAA
CTTAAAAATACGTCAAAAGACTTTAAAAACTCTTTAAACATAACTTACAAAACCTTAAAAATCCG
TAAAATACT
Found at i:37303290 original size:21 final size:21
Alignment explanation
Indices: 37303250--37303290 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37303240 TAAAAATATA
*
37303250 AAAAATCTTTCAAAATCCTTG
1 AAAAATCTTTCAAAAACCTTG
37303271 AAAAATCTTT-AAAACACCTT
1 AAAAATCTTTCAAAA-ACCTT
37303291 AAATATCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (21 bp):
AAAAATCTTTCAAAAACCTTG
Found at i:37304514 original size:10 final size:10
Alignment explanation
Indices: 37304501--37304568 Score: 50
Period size: 10 Copynumber: 6.5 Consensus size: 10
37304491 AAAGAATCTA
37304501 AAAAATGCTT
1 AAAAATGCTT
37304511 AAAAAT-CTAT
1 AAAAATGCT-T
*
37304521 GAAAAAAGCCTT
1 -AAAAATG-CTT
37304533 AAAAATGCTT
1 AAAAATGCTT
* *
37304543 CAAAATACTT
1 AAAAATGCTT
37304553 CAAAAAT-CTTT
1 -AAAAATGC-TT
37304564 AAAAA
1 AAAAA
37304569 ATGTTTTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
9 2 0.04
10 24 0.51
11 18 0.38
12 1 0.02
13 2 0.04
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.26
Consensus pattern (10 bp):
AAAAATGCTT
Found at i:37304547 original size:22 final size:22
Alignment explanation
Indices: 37304500--37304580 Score: 55
Period size: 22 Copynumber: 3.7 Consensus size: 22
37304490 AAAAGAATCT
*
37304500 AAAAAATGCTTAAAAATCTATG
1 AAAAAATGCTTAAAAATCTATC
37304522 AAAAAA-GCCTTAAAAATGCT-TC
1 AAAAAATG-CTTAAAAAT-CTATC
* *
37304544 --AAAATACTTCAAAAATCT-TT
1 AAAAAATGCTT-AAAAATCTATC
*
37304564 AAAAAATGTTTTAAAAA
1 AAAAAATG-CTTAAAAA
37304581 ACCTTAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
20 10 0.21
21 7 0.15
22 26 0.55
23 4 0.09
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.28
Consensus pattern (22 bp):
AAAAAATGCTTAAAAATCTATC
Found at i:37306094 original size:7 final size:7
Alignment explanation
Indices: 37306078--37306557 Score: 381
Period size: 7 Copynumber: 68.9 Consensus size: 7
37306068 AAACCCAAAG
37306078 CCCTAAAC
1 CCCT-AAC
*
37306086 CCCAAAC
1 CCCTAAC
37306093 CCC-AAC
1 CCCTAAC
* *
37306099 CCCCAAG
1 CCCTAAC
* *
37306106 CCCGAAA
1 CCCTAAC
*
37306113 CCCAAAC
1 CCCTAAC
*
37306120 CCCAAAC
1 CCCTAAC
*
37306127 CCCGAAC
1 CCCTAAC
* *
37306134 CTC-AAA
1 CCCTAAC
*
37306140 CCCTAAAT
1 CCCT-AAC
*
37306148 CCCGAA-
1 CCCTAAC
*
37306154 CCCTAAA
1 CCCTAAC
*
37306161 CCCTAAA
1 CCCTAAC
37306168 CCCTAAAC
1 CCCT-AAC
*
37306176 CCCTCAC
1 CCCTAAC
*
37306183 CCCTTAC
1 CCCTAAC
*
37306190 CCCTAAA
1 CCCTAAC
*
37306197 CACTAAC
1 CCCTAAC
37306204 CCCTAAC
1 CCCTAAC
37306211 CCCTAAC
1 CCCTAAC
37306218 CCCTAAC
1 CCCTAAC
37306225 CCCTAA-
1 CCCTAAC
37306231 CCCTAAC
1 CCCTAAC
*
37306238 CACTAAC
1 CCCTAAC
* *
37306245 CCTTAAA
1 CCCTAAC
*
37306252 CCTTAAC
1 CCCTAAC
*
37306259 CCCAAAC
1 CCCTAAC
*
37306266 CCC-AAA
1 CCCTAAC
37306272 CCCTCAA-
1 CCCT-AAC
37306279 CCCTCAA-
1 CCCT-AAC
37306286 CCCTAAC
1 CCCTAAC
*
37306293 ACCTAAC
1 CCCTAAC
37306300 CCCTAAC
1 CCCTAAC
*
37306307 CCCTAAA
1 CCCTAAC
37306314 CCCTAA-
1 CCCTAAC
*
37306320 ACCTAA-
1 CCCTAAC
37306326 CCCTAAC
1 CCCTAAC
37306333 CCCTAAC
1 CCCTAAC
37306340 CCCTAAC
1 CCCTAAC
*
37306347 CCTTAAC
1 CCCTAAC
37306354 CCCTAAC
1 CCCTAAC
*
37306361 CCCTNTAAA
1 CCC--TAAC
*
37306370 CACTAAC
1 CCCTAAC
37306377 CCCTAAC
1 CCCTAAC
37306384 CCCTAAC
1 CCCTAAC
37306391 CCCTAAC
1 CCCTAAC
37306398 CCCTAA-
1 CCCTAAC
37306404 CCCTAAC
1 CCCTAAC
*
37306411 CACTAAC
1 CCCTAAC
* *
37306418 CCTTAAA
1 CCCTAAC
*
37306425 CCTTAAC
1 CCCTAAC
*
37306432 CCCAAAC
1 CCCTAAC
* *
37306439 CCCAAAA
1 CCCTAAC
*
37306446 CCCTACCAA
1 CCCTA--AC
*
37306455 CCCTACAA
1 CCCTA-AC
37306463 CCCTAAC
1 CCCTAAC
*
37306470 ACCTAAC
1 CCCTAAC
37306477 CCCTAAC
1 CCCTAAC
*
37306484 CCCTAAA
1 CCCTAAC
37306491 CCCTAA-
1 CCCTAAC
*
37306497 ACCTAA-
1 CCCTAAC
37306503 CCCTAAC
1 CCCTAAC
37306510 CCCTAAC
1 CCCTAAC
37306517 CCCTAAC
1 CCCTAAC
*
37306524 CCTTAAC
1 CCCTAAC
37306531 CCCTAAC
1 CCCTAAC
*
37306538 CCCTAAA
1 CCCTAAC
*
37306545 CCCTAAA
1 CCCTAAC
37306552 CCCTAA
1 CCCTAA
37306558 ACCCAAAAAA
Statistics
Matches: 398, Mismatches: 58, Indels: 33
0.81 0.12 0.07
Matches are distributed among these distances:
6 54 0.14
7 308 0.77
8 24 0.06
9 12 0.03
ACGTcount: A:0.35, C:0.50, G:0.01, T:0.14
Consensus pattern (7 bp):
CCCTAAC
Found at i:37306705 original size:21 final size:21
Alignment explanation
Indices: 37306679--37306739 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
37306669 TCGGCAACCA
37306679 ACCTGCCACCACCGACAGCCC
1 ACCTGCCACCACCGACAGCCC
* *
37306700 ACCTGCCACCACCGGCAGCTC
1 ACCTGCCACCACCGACAGCCC
** *
37306721 ACCAACAACCACCGACAGC
1 ACCTGCCACCACCGACAGC
37306740 ACCCCTTGGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.28, C:0.52, G:0.15, T:0.05
Consensus pattern (21 bp):
ACCTGCCACCACCGACAGCCC
Found at i:37308938 original size:7 final size:7
Alignment explanation
Indices: 37308887--37309342 Score: 337
Period size: 7 Copynumber: 65.1 Consensus size: 7
37308877 GAGTAAGGGA
37308887 GTTTAGG
1 GTTTAGG
37308894 G-TTAGGTG
1 GTTTA-G-G
*
37308902 GTGTAGG
1 GTTTAGG
37308909 GTTTAGGG
1 GTTTA-GG
*
37308917 GATTAGG
1 GTTTAGG
37308924 GTTTTAGG
1 G-TTTAGG
37308932 GTTTAGG
1 GTTTAGG
*
37308939 GGTTAGG
1 GTTTAGG
37308946 GTTTAAGG
1 GTTT-AGG
37308954 GTTTAGG
1 GTTTAGG
*
37308961 GTTAAGG
1 GTTTAGG
37308968 GTTTAGG
1 GTTTAGG
37308975 GTTTAGG
1 GTTTAGG
*
37308982 GGTTAGGG
1 GTTTA-GG
*
37308990 GTTAAGG
1 GTTTAGG
37308997 G-TTAGG
1 GTTTAGG
37309003 GTTTAGG
1 GTTTAGG
*
37309010 GGTTAGGG
1 GTTTA-GG
37309018 GTTT-GG
1 GTTTAGG
*
37309024 GGTTAGG
1 GTTTAGG
* *
37309031 GGTTGGG
1 GTTTAGG
37309038 GTTT-GG
1 GTTTAGG
*
37309044 GTTGTGGG
1 GTT-TAGG
*
37309052 GTTTGGG
1 GTTTAGG
37309059 GTTTAGG
1 GTTTAGG
**
37309066 GGATAGG
1 GTTTAGG
* *
37309073 GGTCAGG
1 GTTTAGG
37309080 GTTTAGG
1 GTTTAGG
*
37309087 GGTTAGG
1 GTTTAGG
37309094 GTTTAGG
1 GTTTAGG
37309101 GTTTAGG
1 GTTTAGG
*
37309108 GTTTTGG
1 GTTTAGG
*
37309115 GTTTTGG
1 GTTTAGG
*
37309122 GTTTTGG
1 GTTTAGG
*
37309129 GTTTTGG
1 GTTTAGG
*
37309136 GTTTTGG
1 GTTTAGG
*
37309143 GTTTTGGG
1 G-TTTAGG
37309151 GTTTAGG
1 GTTTAGG
37309158 GTTTAGG
1 GTTTAGG
*
37309165 GTTTCGG
1 GTTTAGG
37309172 GTTT-GG
1 GTTTAGG
*
37309178 GGTTAGG
1 GTTTAGG
37309185 GTTT-GG
1 GTTTAGG
37309191 GATTT-GG
1 G-TTTAGG
*
37309198 GGTTAGG
1 GTTTAGG
37309205 GTTT-GG
1 GTTTAGG
*
37309211 GGTTAGG
1 GTTTAGG
*
37309218 GTTTAGT
1 GTTTAGG
*
37309225 GTTTTGG
1 GTTTAGG
37309232 GTTT-GAG
1 GTTTAG-G
*
37309239 GTTTGGG
1 GTTTAGG
37309246 GTTT-GAG
1 GTTTAG-G
37309253 GTTTAGG
1 GTTTAGG
37309260 GTTT-GG
1 GTTTAGG
*
37309266 GTTTGGG
1 GTTTAGG
37309273 GTTT-GAG
1 GTTTAG-G
*
37309280 ATTTAGG
1 GTTTAGG
37309287 GTTT-GG
1 GTTTAGG
*
37309293 GTCTAGG
1 GTTTAGG
*
37309300 GTATAGG
1 GTTTAGG
*
37309307 GTGTAGGG
1 GTTTA-GG
*
37309315 GGTT-GG
1 GTTTAGG
*
37309321 GGTTAGG
1 GTTTAGG
*
37309328 GTTCAGG
1 GTTTAGG
*
37309335 GGTTAGG
1 GTTTAGG
37309342 G
1 G
37309343 GTCAGGGGTC
Statistics
Matches: 372, Mismatches: 50, Indels: 54
0.78 0.11 0.11
Matches are distributed among these distances:
6 53 0.14
7 267 0.72
8 50 0.13
9 2 0.01
ACGTcount: A:0.11, C:0.01, G:0.49, T:0.39
Consensus pattern (7 bp):
GTTTAGG
Found at i:37308946 original size:14 final size:14
Alignment explanation
Indices: 37308887--37309456 Score: 276
Period size: 14 Copynumber: 40.8 Consensus size: 14
37308877 GAGTAAGGGA
37308887 GTTTA-GGGTTAGGTG
1 GTTTAGGGGTTA-G-G
* *
37308902 GTGTAGGGTTTAGGG
1 GTTTAGGGGTTA-GG
* *
37308917 GATTAGGGTTTTAGG
1 GTTTAGGG-GTTAGG
37308932 GTTTAGGGGTTAGG
1 GTTTAGGGGTTAGG
*
37308946 GTTTAAGGGTTTAGG
1 GTTT-AGGGGTTAGG
* *
37308961 GTTAAGGGTTTAGG
1 GTTTAGGGGTTAGG
37308975 GTTTAGGGGTTAGG
1 GTTTAGGGGTTAGG
* *
37308989 GGTTAAGGGTTAGG
1 GTTTAGGGGTTAGG
37309003 GTTTAGGGGTTAGGG
1 GTTTAGGGGTTA-GG
37309018 GTTT-GGGGTTAGG
1 GTTTAGGGGTTAGG
* *
37309031 GGTT-GGGGTTTGG
1 GTTTAGGGGTTAGG
*
37309044 GTTGT-GGGGTTTGGG
1 GTT-TAGGGG-TTAGG
*
37309059 GTTTAGGGGATAGG
1 GTTTAGGGGTTAGG
* * *
37309073 GGTCAGGGTTTAGG
1 GTTTAGGGGTTAGG
* *
37309087 GGTTAGGGTTTAGG
1 GTTTAGGGGTTAGG
* *
37309101 GTTTAGGGTTTTGG
1 GTTTAGGGGTTAGG
* * *
37309115 GTTTTGGGTTTTGG
1 GTTTAGGGGTTAGG
* * *
37309129 GTTTTGGGTTTTGG
1 GTTTAGGGGTTAGG
*
37309143 GTTTTGGGGTTTAGG
1 GTTTAGGGG-TTAGG
* *
37309158 GTTTAGGGTTTCGG
1 GTTTAGGGGTTAGG
37309172 GTTT-GGGGTTAGG
1 GTTTAGGGGTTAGG
* *
37309185 GTTT-GGGATTTGG
1 GTTTAGGGGTTAGG
* *
37309198 GGTTA-GGGTTTGG
1 GTTTAGGGGTTAGG
* * *
37309211 GGTTAGGGTTTAGT
1 GTTTAGGGGTTAGG
* *
37309225 GTTT-TGGGTTTGAG
1 GTTTAGGGGTTAG-G
*
37309239 GTTT-GGGGTTTGAG
1 GTTTAGGGGTTAG-G
*
37309253 GTTTA-GGGTTTGG
1 GTTTAGGGGTTAGG
*
37309266 GTTT-GGGGTTTGAG
1 GTTTAGGGGTTAG-G
* *
37309280 ATTTA-GGGTTTGG
1 GTTTAGGGGTTAGG
*
37309293 GTCTA-GGGTATAGG
1 GTTTAGGGGT-TAGG
*
37309307 GTGTAGGGGGTT-GG
1 GTTTA-GGGGTTAGG
*
37309321 GGTTA-GGGTTCAGG
1 GTTTAGGGGTT-AGG
* *
37309335 GGTTAGGGGTCAGG
1 GTTTAGGGGTTAGG
* * *
37309349 GGTCAGGGGTCAAGG
1 GTTTAGGGGT-TAGG
* *
37309364 G-TCAGGGGTCAGG
1 GTTTAGGGGTTAGG
* *
37309377 GTTCA-GGGTTCAAG
1 GTTTAGGGGTT-AGG
* *
37309391 GTTCA-GGGTCAGG
1 GTTTAGGGGTTAGG
* * *
37309404 GGTCAGGGGTCAGG
1 GTTTAGGGGTTAGG
* * *
37309418 GGTCAGGGGTCAGG
1 GTTTAGGGGTTAGG
*
37309432 GTTTAGGGTTTAGG
1 GTTTAGGGGTTAGG
*
37309446 GGTTAGGGGTT
1 GTTTAGGGGTT
37309457 TTTTTTTTTT
Statistics
Matches: 460, Mismatches: 70, Indels: 51
0.79 0.12 0.09
Matches are distributed among these distances:
12 5 0.01
13 87 0.19
14 284 0.62
15 69 0.15
16 15 0.03
ACGTcount: A:0.12, C:0.03, G:0.49, T:0.36
Consensus pattern (14 bp):
GTTTAGGGGTTAGG
Found at i:37309343 original size:7 final size:7
Alignment explanation
Indices: 37309313--37309456 Score: 84
Period size: 7 Copynumber: 20.9 Consensus size: 7
37309303 TAGGGTGTAG
37309313 GGGGTT-
1 GGGGTTA
37309319 GGGGTTA
1 GGGGTTA
37309326 -GGGTTCA
1 GGGGTT-A
37309333 GGGGTTA
1 GGGGTTA
*
37309340 GGGGTCA
1 GGGGTTA
*
37309347 GGGGTCA
1 GGGGTTA
*
37309354 GGGGTCA
1 GGGGTTA
* *
37309361 AGGGTCA
1 GGGGTTA
*
37309368 GGGGTCA
1 GGGGTTA
37309375 -GGGTTCA
1 GGGGTT-A
37309382 -GGGTTCA
1 GGGGTT-A
*
37309389 -AGGTTCA
1 GGGGTT-A
*
37309396 -GGGTCA
1 GGGGTTA
*
37309402 GGGGTCA
1 GGGGTTA
*
37309409 GGGGTCA
1 GGGGTTA
*
37309416 GGGGTCA
1 GGGGTTA
*
37309423 GGGGTCA
1 GGGGTTA
*
37309430 GGGTTTA
1 GGGGTTA
*
37309437 GGGTTTA
1 GGGGTTA
37309444 GGGGTTA
1 GGGGTTA
37309451 GGGGTT
1 GGGGTT
37309457 TTTTTTTTTT
Statistics
Matches: 123, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
6 16 0.13
7 102 0.83
8 5 0.04
ACGTcount: A:0.15, C:0.10, G:0.52, T:0.24
Consensus pattern (7 bp):
GGGGTTA
Found at i:37309343 original size:21 final size:21
Alignment explanation
Indices: 37309313--37309455 Score: 139
Period size: 21 Copynumber: 6.9 Consensus size: 21
37309303 TAGGGTGTAG
* *
37309313 GGGGTT-GGGGTTAGGGTTCA
1 GGGGTTAGGGGTCAGGGGTCA
37309333 GGGGTTAGGGGTCAGGGGTCA
1 GGGGTTAGGGGTCAGGGGTCA
* *
37309354 GGGGTCAAGGGTCAGGGGTCA
1 GGGGTTAGGGGTCAGGGGTCA
* * *
37309375 -GGGTTCAGGGTTCAAGGTTCA
1 GGGGTT-AGGGGTCAGGGGTCA
*
37309396 -GGGTCAGGGGTCAGGGGTCA
1 GGGGTTAGGGGTCAGGGGTCA
* * *
37309416 GGGGTCAGGGGTCAGGGTTTA
1 GGGGTTAGGGGTCAGGGGTCA
* *
37309437 GGGTTTAGGGGTTAGGGGT
1 GGGGTTAGGGGTCAGGGGT
37309456 TTTTTTTTTT
Statistics
Matches: 101, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
20 22 0.22
21 79 0.78
ACGTcount: A:0.15, C:0.10, G:0.52, T:0.23
Consensus pattern (21 bp):
GGGGTTAGGGGTCAGGGGTCA
Found at i:37309516 original size:1 final size:1
Alignment explanation
Indices: 37309455--37309496 Score: 84
Period size: 1 Copynumber: 42.0 Consensus size: 1
37309445 GGGTTAGGGG
37309455 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
37309497 GGGTTTTGGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:37309818 original size:1 final size:1
Alignment explanation
Indices: 37309812--37309838 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
37309802 TAAGGTAAAA
37309812 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
37309839 CAGTCTATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:37316697 original size:13 final size:14
Alignment explanation
Indices: 37316681--37316722 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 14
37316671 ACTTTTTTTT
37316681 TTTTTTGGTTT-GG
1 TTTTTTGGTTTAGG
37316694 TTTTTTGGTTTAGG
1 TTTTTTGGTTTAGG
*
37316708 --TTTAGGTTTAGG
1 TTTTTTGGTTTAGG
37316720 TTT
1 TTT
37316723 AGTTTAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 11 0.44
13 11 0.44
14 3 0.12
ACGTcount: A:0.07, C:0.00, G:0.29, T:0.64
Consensus pattern (14 bp):
TTTTTTGGTTTAGG
Found at i:37316729 original size:5 final size:5
Alignment explanation
Indices: 37316701--37316880 Score: 225
Period size: 5 Copynumber: 33.2 Consensus size: 5
37316691 TGGTTTTTTG
37316701 GTTTA GGTTTA GGTTTA GGTTTA GTTTA GTTTTA GTTTA GTTTA GTTTA
1 GTTTA -GTTTA -GTTTA -GTTTA GTTTA G-TTTA GTTTA GTTTA GTTTA
*
37316750 GTTTA ATTTA GTTTA GTTTA GGTTTA GGTTTA GTTTA GTTTA GTTTA GGTTTA
1 GTTTA GTTTA GTTTA GTTTA -GTTTA -GTTTA GTTTA GTTTA GTTTA -GTTTA
37316803 GGTTTA GGTTTA GTTTA GGTTTA GTTTA GTTTA GTTTA GTTTA GGTTTA
1 -GTTTA -GTTTA GTTTA -GTTTA GTTTA GTTTA GTTTA GTTTA -GTTTA
37316852 GGTTTA GTTTA TGTTTA GTTTA GGTTTA G
1 -GTTTA GTTTA -GTTTA GTTTA -GTTTA G
37316881 GGTTTAGGGT
Statistics
Matches: 165, Mismatches: 2, Indels: 15
0.91 0.01 0.08
Matches are distributed among these distances:
5 89 0.54
6 76 0.46
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (5 bp):
GTTTA
Found at i:37316738 original size:28 final size:28
Alignment explanation
Indices: 37316700--37317109 Score: 305
Period size: 35 Copynumber: 13.9 Consensus size: 28
37316690 TTGGTTTTTT
37316700 GGTTTAGGTTTAGGTTTAGGTTTAGTTTA
1 GGTTTA-GTTTAGGTTTAGGTTTAGTTTA
*
37316729 GTTTTAGTTTA-GTTTA-GTTTAGTTTA
1 GGTTTAGTTTAGGTTTAGGTTTAGTTTA
*
37316755 -ATTTAGTTTA-GTTTAGGTTTAGGTTTA
1 GGTTTAGTTTAGGTTTAGGTTTA-GTTTA
37316782 -GTTTAGTTTA-GTTTAGGTTTAGGTTTA
1 GGTTTAGTTTAGGTTTAGGTTTA-GTTTA
37316809 GGTTTAGTTTAGGTTTA-GTTTAGTTTA
1 GGTTTAGTTTAGGTTTAGGTTTAGTTTA
37316836 -GTTTAGTTTAGGTTTAGGTTTAGTTTA
1 GGTTTAGTTTAGGTTTAGGTTTAGTTTA
*
37316863 TGTTTAGTTTAGGTTTAGG----GTTTA
1 GGTTTAGTTTAGGTTTAGGTTTAGTTTA
37316887 GGGTTTTAGGGTTTAGGGTTTAGGGTTTAGAGTTTA
1 -GG-TTTA--GTTTA-GGTTTA-GGTTT--AGTTTA
37316923 GGTTTAGTTTAGGGTTTTAGGGTTTTAGGGTTTTA
1 GGTTTAGTTTA-GG-TTTA-GG-TTTA--G-TTTA
37316958 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTA
1 -GGTTTA--GTTTA-GGTTTA-GGTTTA--GTTTA
37316993 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTA
1 -GGTTTA--GTTTA-GGTTTA-GGTTTA--GTTTA
37317028 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTA
1 -GGTTTA--GTTTA-GGTTTA-GGTTTA--GTTTA
* *
37317063 GGGTTNGTTTA-GTTTA-GTTTAGTTTA
1 GGTTTAGTTTAGGTTTAGGTTTAGTTTA
37317089 -GTTTAGTTTA-GTTTA-GTTTAG
1 GGTTTAGTTTAGGTTTAGGTTTAG
37317110 GGTTTTTTTT
Statistics
Matches: 347, Mismatches: 8, Indels: 56
0.84 0.02 0.14
Matches are distributed among these distances:
24 5 0.01
25 34 0.10
26 40 0.12
27 51 0.15
28 48 0.14
29 16 0.05
30 7 0.02
32 14 0.04
33 7 0.02
34 12 0.03
35 80 0.23
36 18 0.05
37 7 0.02
38 8 0.02
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (28 bp):
GGTTTAGTTTAGGTTTAGGTTTAGTTTA
Found at i:37316834 original size:49 final size:52
Alignment explanation
Indices: 37316700--37317110 Score: 338
Period size: 63 Copynumber: 7.6 Consensus size: 52
37316690 TTGGTTTTTT
*
37316700 GGTTTAGGTTTAGGTTTAGGTTTA-GTTTAGTTTTAGTTTAGTTTA-GTTTA
1 GGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGTTTAGTTTAGGTTTA
*
37316750 -GTTTA-ATTTA-GTTTA-GTTTAGGTTTAGGTTTAGTTTAGTTTA-GTTTA
1 GGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGTTTAGTTTAGGTTTA
37316797 GGTTTAGGTTTAGGTTTA-GTTTAGGTTTA-GTTTAGTTTAGTTTA-GTTTA
1 GGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGTTTAGTTTAGGTTTA
*
37316846 GGTTTAGGTTTA-GTTTATGTTTA-GTTTAGGTTTAGGGTTTAGGGTTTTAGGGTTTA
1 GGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGGTTTA--GTTTA--G-TTTA-GGTTTA
37316902 GGGTTTAGGGTTTAGAGTTTAGGTTTA-GTTTAGGGTTTTAGGGTTTTAGGGTTTTAGGGTTTA
1 -GGTTTA-GGTTTAG-GTTTAGGTTTAGGTTTA-GG-TTTA--G-TTTA--G-TTTA-GGTTTA
37316965 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTA
1 -GGTTTA-GGTTTA-GGTTTA-GGTTTA-GGTTTA-GGTTTA--GTTTA--GTTTA-GGTTTA
* *
37317028 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTNGTTTAGTTTA-GTTTA
1 -GGTTTA-GGTTTA-GGTTTA-GGTTTA-GGTTTAGGTTTAGTTTAGTTTAGGTTTA
37317084 -GTTTA-GTTTA-GTTTA-GTTTA-GTTTAGG
1 GGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGG
37317111 GTTTTTTTTT
Statistics
Matches: 331, Mismatches: 6, Indels: 52
0.85 0.02 0.13
Matches are distributed among these distances:
46 12 0.04
47 30 0.09
48 24 0.07
49 51 0.15
50 21 0.06
51 5 0.02
52 5 0.02
53 1 0.00
54 9 0.03
56 10 0.03
57 6 0.02
58 11 0.03
60 20 0.06
61 2 0.01
62 11 0.03
63 84 0.25
64 14 0.04
65 7 0.02
66 8 0.02
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (52 bp):
GGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGGTTTAGTTTAGTTTAGGTTTA
Found at i:37316886 original size:7 final size:7
Alignment explanation
Indices: 37316869--37317067 Score: 325
Period size: 7 Copynumber: 28.4 Consensus size: 7
37316859 TTTATGTTTA
37316869 GTTTA-G
1 GTTTAGG
37316875 GTTTAGG
1 GTTTAGG
37316882 GTTTAGG
1 GTTTAGG
37316889 GTTTTAGG
1 G-TTTAGG
37316897 GTTTAGG
1 GTTTAGG
37316904 GTTTAGG
1 GTTTAGG
*
37316911 GTTTAGA
1 GTTTAGG
37316918 GTTTA-G
1 GTTTAGG
37316924 GTTTA--
1 GTTTAGG
37316929 GTTTAGG
1 GTTTAGG
37316936 GTTTTAGG
1 G-TTTAGG
37316944 GTTTTAGG
1 G-TTTAGG
37316952 GTTTTAGG
1 G-TTTAGG
37316960 GTTTAGG
1 GTTTAGG
37316967 GTTTAGG
1 GTTTAGG
37316974 GTTTAGG
1 GTTTAGG
37316981 GTTTAGG
1 GTTTAGG
37316988 GTTTAGG
1 GTTTAGG
37316995 GTTTAGG
1 GTTTAGG
37317002 GTTTAGG
1 GTTTAGG
37317009 GTTTAGG
1 GTTTAGG
37317016 GTTTAGG
1 GTTTAGG
37317023 GTTTAGG
1 GTTTAGG
37317030 GTTTAGG
1 GTTTAGG
37317037 GTTTAGG
1 GTTTAGG
37317044 GTTTAGG
1 GTTTAGG
37317051 GTTTAGG
1 GTTTAGG
37317058 GTTTAGG
1 GTTTAGG
37317065 GTT
1 GTT
37317068 NGTTTAGTTT
Statistics
Matches: 186, Mismatches: 2, Indels: 9
0.94 0.01 0.05
Matches are distributed among these distances:
5 5 0.03
6 10 0.05
7 141 0.76
8 30 0.16
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:37317079 original size:5 final size:5
Alignment explanation
Indices: 37317069--37317109 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
37317059 TTTAGGGTTN
37317069 GTTTA GTTTA GTTTA GTTTA GTTTA GTTTA GTTTA GTTTA G
1 GTTTA GTTTA GTTTA GTTTA GTTTA GTTTA GTTTA GTTTA G
37317110 GGTTTTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.59
Consensus pattern (5 bp):
GTTTA
Done.