Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 32 of 59
Found at i:11703578 original size:42 final size:42
Alignment explanation
Indices: 11703531--11703654 Score: 196
Period size: 42 Copynumber: 3.0 Consensus size: 42
11703521 CATCTCATAT
*
11703531 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCAGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
11703573 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
* * * *
11703615 GTAACGGCTTATGCGCA-TCCTACTGGCACATAGCCGGGTC
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTC
11703655 CACATCAACA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 21 0.27
42 56 0.73
ACGTcount: A:0.22, C:0.34, G:0.24, T:0.20
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
Found at i:11721897 original size:19 final size:20
Alignment explanation
Indices: 11721873--11721910 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11721863 CTATAAATAC
11721873 CTTGAA-TTTCCAGCAGCTT
1 CTTGAATTTTCCAGCAGCTT
*
11721892 CTTGAATTTTCCAGTAGCT
1 CTTGAATTTTCCAGCAGCT
11721911 AGTCTTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (20 bp):
CTTGAATTTTCCAGCAGCTT
Found at i:11723283 original size:39 final size:40
Alignment explanation
Indices: 11723197--11723289 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 40
11723187 AAATGCATTC
* * * * *
11723197 TCGCTACAGCGAGAAACTTTATGTTTTTTGGGTTGCAATT
1 TCGCTGCAGCGAGAAACATTATGTTTTCTAGGTTGAAATT
* *
11723237 TCACTGCAGCGAGAAACATTCTG-TTTCTAGGTTGAAATT
1 TCGCTGCAGCGAGAAACATTATGTTTTCTAGGTTGAAATT
11723276 TCGCTGCAGCGAGA
1 TCGCTGCAGCGAGA
11723290 TTCACTCTCG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 26 0.58
40 19 0.42
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
TCGCTGCAGCGAGAAACATTATGTTTTCTAGGTTGAAATT
Found at i:11732766 original size:33 final size:33
Alignment explanation
Indices: 11732724--11732791 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
11732714 AGACTCCTAA
11732724 GCAGTCTTTTTACTAATTCATGTTCAGGGATAG
1 GCAGTCTTTTTACTAATTCATGTTCAGGGATAG
11732757 GCAGTCTTTTTACTAATTCATGTTCAGGGATAG
1 GCAGTCTTTTTACTAATTCATGTTCAGGGATAG
11732790 GC
1 GC
11732792 TTGCCTAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (33 bp):
GCAGTCTTTTTACTAATTCATGTTCAGGGATAG
Found at i:11736404 original size:13 final size:13
Alignment explanation
Indices: 11736386--11736410 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11736376 ATTTTCAAAA
11736386 ATTTTATAAAATT
1 ATTTTATAAAATT
11736399 ATTTTATAAAAT
1 ATTTTATAAAAT
11736411 CCCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:11737530 original size:19 final size:20
Alignment explanation
Indices: 11737501--11737540 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
11737491 TCACTTCTAA
11737501 ACTTCAAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
11737521 ACTT-AAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
11737540 A
1 A
11737541 AGTCAAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (20 bp):
ACTTCAAATCATACTCCAAT
Found at i:11739781 original size:28 final size:27
Alignment explanation
Indices: 11739750--11739803 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
11739740 TTTTAAAGCA
**
11739750 TAGGAGAAAAATGGTAATTTTGCCACCC
1 TAGGAGAAAAACAGTAATTTT-CCACCC
* *
11739778 TAGGGGCAAAACAGTAATTTTCCACC
1 TAGGAGAAAAACAGTAATTTTCCACC
11739804 ACCAGGACAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TAGGAGAAAAACAGTAATTTTCCACCC
Found at i:11752842 original size:13 final size:13
Alignment explanation
Indices: 11752824--11752848 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11752814 TGAATAAATG
11752824 TGATTTTATAAAA
1 TGATTTTATAAAA
11752837 TGATTTTATAAA
1 TGATTTTATAAA
11752849 TTTTTAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:11756600 original size:15 final size:15
Alignment explanation
Indices: 11756580--11756618 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
11756570 ATAAAATAAA
*
11756580 ACTTTCCTTTTTAAG
1 ACTTTCCATTTTAAG
*
11756595 ACTTTCCATTTTAAT
1 ACTTTCCATTTTAAG
*
11756610 TCTTTCCAT
1 ACTTTCCAT
11756619 AATTAAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.03, T:0.54
Consensus pattern (15 bp):
ACTTTCCATTTTAAG
Found at i:11756911 original size:69 final size:71
Alignment explanation
Indices: 11756831--11757007 Score: 232
Period size: 75 Copynumber: 2.5 Consensus size: 71
11756821 ATCACATAAC
* * * ** *
11756831 TTTAAGAATTTCTTTTGAAGTAGGAAACTATTTCC-TATGAATTTCC-CAAATTAAAATACTATC
1 TTTAGGAATTTCTTTTAAAGTAGGAAACAATTTCCTTATGAATCACCAAAAATTAAAATACTATC
11756894 CTTAAT
66 CTTAAT
*
11756900 TTTAGGAATTTCTTTTAAAGTAGGAAACAATTTCCTATTTTATGAATCACCAAAAATTAAAATTC
1 TTTAGGAATTTCTTTTAAAGTAGGAAACAATTTCC----TTATGAATCACCAAAAATTAAAATAC
11756965 TATCCTTAAT
62 TATCCTTAAT
*
11756975 TTTAGGAATTGCTTTTAAAGTAGGAAACAATTT
1 TTTAGGAATTTCTTTTAAAGTAGGAAACAATTT
11757008 TCTAATTTTT
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
69 32 0.34
74 9 0.10
75 53 0.56
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (71 bp):
TTTAGGAATTTCTTTTAAAGTAGGAAACAATTTCCTTATGAATCACCAAAAATTAAAATACTATC
CTTAAT
Found at i:11759285 original size:35 final size:36
Alignment explanation
Indices: 11759207--11759288 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
11759197 TCTCAGCAGC
11759207 TCATGTGCACTTCCACACCACACATAGCAAGAATCA
1 TCATGTGCACTTCCACACCACACATAGCAAGAATCA
* * *
11759243 TCTTGTGCACTTCCACACCGCACA-AGGCAA-TATCA
1 TCATGTGCACTTCCACACCACACATA-GCAAGAATCA
11759278 TCATGTGCACT
1 TCATGTGCACT
11759289 CCCCCTCTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
35 15 0.37
36 26 0.63
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.23
Consensus pattern (36 bp):
TCATGTGCACTTCCACACCACACATAGCAAGAATCA
Found at i:11760183 original size:17 final size:18
Alignment explanation
Indices: 11760163--11760196 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11760153 GGAGCAAGGA
11760163 AAAAAAAGG-AAAGAAAG
1 AAAAAAAGGAAAAGAAAG
*
11760180 AAAACAAGGAAAAGAAA
1 AAAAAAAGGAAAAGAAA
11760197 ATGAAAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (18 bp):
AAAAAAAGGAAAAGAAAG
Found at i:11763106 original size:13 final size:13
Alignment explanation
Indices: 11763088--11763112 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11763078 ATTTTGTATT
11763088 TATATATGTAAAC
1 TATATATGTAAAC
11763101 TATATATGTAAA
1 TATATATGTAAA
11763113 GGTTTTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (13 bp):
TATATATGTAAAC
Found at i:11779913 original size:43 final size:43
Alignment explanation
Indices: 11779830--11779951 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 43
11779820 TTATGTGGTG
** * * * *
11779830 ATGATGACCCGACTATGTGCTAGCAGGGAGTGCCCCTGAGCCA
1 ATGATGACCAAACTATGTGCGAGTAGGGAGTGCACATGAGCCA
**
11779873 ATGATGACCAAACTATGTGCGAGTAGGGAGTGCACATGAGCTG
1 ATGATGACCAAACTATGTGCGAGTAGGGAGTGCACATGAGCCA
***
11779916 ATGATG-TTGAA--ATGTGCGAGTAGGGAGTGCACATGA
1 ATGATGACCAAACTATGTGCGAGTAGGGAGTGCACATGA
11779952 CGATCAATGA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
40 25 0.37
42 2 0.03
43 41 0.60
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.21
Consensus pattern (43 bp):
ATGATGACCAAACTATGTGCGAGTAGGGAGTGCACATGAGCCA
Found at i:11786939 original size:38 final size:39
Alignment explanation
Indices: 11786850--11786952 Score: 120
Period size: 38 Copynumber: 2.6 Consensus size: 39
11786840 ACCCAGCTCA
*
11786850 TGTACATCCCCCCACATCGTGCACATAGCCGGCACCATCG
1 TGTACATCCCCCCACATCGTGCACATAGCAGG-ACCATCG
** * * *
11786890 TGTGTAGCCCCCCACATCATGCACA-ATCAGTG-CCATCG
1 TGTACATCCCCCCACATCGTGCACATAGCAG-GACCATCG
11786928 TGTACATCCCCCCACATCGTGCACA
1 TGTACATCCCCCCACATCGTGCACA
11786953 CGGGCACTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
38 27 0.52
39 3 0.06
40 22 0.42
ACGTcount: A:0.23, C:0.41, G:0.17, T:0.19
Consensus pattern (39 bp):
TGTACATCCCCCCACATCGTGCACATAGCAGGACCATCG
Found at i:11797480 original size:19 final size:19
Alignment explanation
Indices: 11797456--11797554 Score: 65
Period size: 19 Copynumber: 5.1 Consensus size: 19
11797446 ACCCGACTCA
11797456 TGTACATCCCCCCACATCG
1 TGTACATCCCCCCACATCG
* ** *
11797475 TGTACATAGCCGGCACCATCA
1 TGTACAT-CCCCCCA-CATCG
*
11797496 TGTGCATCCCCCCACATCG
1 TGTACATCCCCCCACATCG
* ****
11797515 TGCACAATCAGTGC-CATCG
1 TGTAC-ATCCCCCCACATCG
*
11797534 TGTACATCCCTCCACATCG
1 TGTACATCCCCCCACATCG
11797553 TG
1 TG
11797555 CACACAGGCA
Statistics
Matches: 57, Mismatches: 19, Indels: 8
0.68 0.23 0.10
Matches are distributed among these distances:
18 5 0.09
19 30 0.53
20 12 0.21
21 10 0.18
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.22
Consensus pattern (19 bp):
TGTACATCCCCCCACATCG
Found at i:11797542 original size:38 final size:39
Alignment explanation
Indices: 11797453--11797558 Score: 126
Period size: 38 Copynumber: 2.7 Consensus size: 39
11797443 CATACCCGAC
* *
11797453 TCATGTACATCCCCCCACATCGTGTACATAGCCGGCACCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCAGG-ACCA
* *
11797493 TCATGTGCATCCCCCCACATCGTGCACA-ATCAGTG-CCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCAG-GACCA
* *
11797531 TCGTGTACATCCCTCCACATCGTGCACA
1 TCATGTACATCCCCCCACATCGTGCACA
11797559 CAGGCACTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 28 0.48
39 3 0.05
40 27 0.47
ACGTcount: A:0.24, C:0.40, G:0.15, T:0.22
Consensus pattern (39 bp):
TCATGTACATCCCCCCACATCGTGCACATAGCAGGACCA
Found at i:11798012 original size:54 final size:54
Alignment explanation
Indices: 11797944--11798051 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
11797934 TAGAACTAGG
*
11797944 ATCACATTAGCATAAGCAATAGGTCAATTCACACACTATGAACCCTAAAAGCTA
1 ATCACATTACCATAAGCAATAGGTCAATTCACACACTATGAACCCTAAAAGCTA
*
11797998 ATCACATTACCATAAGCAATAGGTCAATTCACACACTATGAACCTTAAAAGCTA
1 ATCACATTACCATAAGCAATAGGTCAATTCACACACTATGAACCCTAAAAGCTA
11798052 TCTCTTAGCT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.23
Consensus pattern (54 bp):
ATCACATTACCATAAGCAATAGGTCAATTCACACACTATGAACCCTAAAAGCTA
Found at i:11798029 original size:27 final size:27
Alignment explanation
Indices: 11797945--11798030 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
11797935 AGAACTAGGA
*
11797945 TCACATTAGCATAAGCAATAGGTCAAT
1 TCACATTACCATAAGCAATAGGTCAAT
* * * * *
11797972 TCACA-CACTATGAACCCTAAAAGCT-AA-
1 TCACATTACCAT-AA-GC-AATAGGTCAAT
11797999 TCACATTACCATAAGCAATAGGTCAAT
1 TCACATTACCATAAGCAATAGGTCAAT
11798026 TCACA
1 TCACA
11798031 CACTATGAAC
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
25 5 0.12
26 6 0.14
27 19 0.45
28 7 0.17
29 5 0.12
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.23
Consensus pattern (27 bp):
TCACATTACCATAAGCAATAGGTCAAT
Found at i:11799223 original size:53 final size:53
Alignment explanation
Indices: 11799156--11799256 Score: 148
Period size: 53 Copynumber: 1.9 Consensus size: 53
11799146 AGCGAGAAAC
* *
11799156 TCTCAGGTTGGGAGGCTAGCTGCAGTCTTGTAACTCGCTGCAGCGAGAATGTA
1 TCTCAGGTTGGGAGGCTAGCTACAGTCTTGTAACTCACTGCAGCGAGAATGTA
* * * *
11799209 TCTCAGGTTGGGAGGTTGGCTACAGTTTTGTAACTCACTGCAGTGAGA
1 TCTCAGGTTGGGAGGCTAGCTACAGTCTTGTAACTCACTGCAGCGAGA
11799257 TGTCTACGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (53 bp):
TCTCAGGTTGGGAGGCTAGCTACAGTCTTGTAACTCACTGCAGCGAGAATGTA
Found at i:11800960 original size:11 final size:11
Alignment explanation
Indices: 11800944--11800972 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
11800934 AGATTTATCA
11800944 TTTCCATGCAT
1 TTTCCATGCAT
11800955 TTTCCAT-CAT
1 TTTCCATGCAT
11800965 TTTCCATG
1 TTTCCATG
11800973 GTTGAATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.17, C:0.28, G:0.07, T:0.48
Consensus pattern (11 bp):
TTTCCATGCAT
Found at i:11812181 original size:58 final size:57
Alignment explanation
Indices: 11812050--11812219 Score: 173
Period size: 59 Copynumber: 2.9 Consensus size: 57
11812040 TTAAGAAAAC
* * * ** * * *
11812050 TCTTGTCTTTAATAAAGACAAAAATATTTTACCTTGTCTAAATTGTGACGAATATGTTT
1 TCTTGTC-TAAATTAAGACAAAAATATTTT-TCTTGTCTAAATTAAGACAAACATATTT
*
11812109 TCTTGTCTAGATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATATTT
1 TCTTGTCTAAATTAAGAC-AAAAATATTTTTCTTGTC-TAAATTAAGACAAACATATTT
** *
11812168 TCTT-TCTAAATTAAGACCAACCA-AGTTTTCTTGTCTAAATTAAGACAAACAT
1 TCTTGTCTAAATTAAGA-CAAAAATATTTTTCTTGTCTAAATTAAGACAAACAT
11812220 GTTAAGTTGC
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
56 17 0.18
57 11 0.12
58 28 0.29
59 39 0.41
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.39
Consensus pattern (57 bp):
TCTTGTCTAAATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACAAACATATTT
Found at i:11812211 original size:29 final size:30
Alignment explanation
Indices: 11812105--11812219 Score: 141
Period size: 28 Copynumber: 4.0 Consensus size: 30
11812095 TGACGAATAT
* * *
11812105 GTTTTCTTGTCTAGATTAAGACAAAAAATA
1 GTTTTCTTGTCTAAATTAAGACCAAACATA
*
11812135 TTTTTCTTGTCTTAAATTAAGA-CAAACATA
1 GTTTTCTTGTC-TAAATTAAGACCAAACATA
*
11812165 -TTTTCTT-TCTAAATTAAGACCAACCA-A
1 GTTTTCTTGTCTAAATTAAGACCAAACATA
11812192 GTTTTCTTGTCTAAATTAAGA-CAAACAT
1 GTTTTCTTGTCTAAATTAAGACCAAACAT
11812220 GTTAAGTTGC
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
27 11 0.15
28 19 0.26
29 19 0.26
30 16 0.22
31 9 0.12
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (30 bp):
GTTTTCTTGTCTAAATTAAGACCAAACATA
Found at i:11814991 original size:10 final size:10
Alignment explanation
Indices: 11814958--11814983 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
11814948 TTTGGAAGTT
11814958 AAGGCTTTTG
1 AAGGCTTTTG
11814968 AAGGCTTTTG
1 AAGGCTTTTG
11814978 AAGGCT
1 AAGGCT
11814984 ATTTAAGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.35
Consensus pattern (10 bp):
AAGGCTTTTG
Found at i:11817505 original size:172 final size:172
Alignment explanation
Indices: 11817155--11817763 Score: 686
Period size: 172 Copynumber: 3.6 Consensus size: 172
11817145 TGGGCTGTGA
** * *
11817155 TAGAAACATGAAACGAAAGCCATCCTTTGACAAGAAAAG-CCTATTTATAGTCACTCATGCCTTC
1 TAGAAACATGAAGTGAAAGCCATCCGTTGAAAAGAAAAGTCC-ATTTATAGTCACTCATGCCTTC
* * * * *
11817219 GAAAGCCTTA-TTGCTCACTTTAAGTGG-TTTATAACCTTATAAATGATTTTAAATTGAATT-TT
65 GAAAGCC-TAGTTACTCACTTTAAATGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTGTT
* * * * ** *
11817281 GTTTTAATTTTTGGTTAAAACT-TATAATAATTTCTTGTTTGCACC
129 -TTTTCATTTTTGGTTACAA-TAGATCATAATTTAATGTTTGCATC
* * * *
11817326 CAGAAACATGAAGTGAAAGCTATACGTTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCT
1 TAGAAACATGAAGTGAAAGCCATCCGTTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
** * *
11817391 AAAGCCTAGTTACTTGCTTTATATGATTTTATGATCTTATAAATGATTTTAAGTTGAATTGTTTT
66 AAAGCCTAGTTACTCACTTTAAATGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTGTTTT
*
11817456 TTCATTTTTGGTTACAATAGATCATAGA-TTGATGTTTGCATC
131 TTCATTTTTGGTTACAATAGATCATA-ATTTAATGTTTGCATC
* * * *
11817498 TAGAAACATGAAG-CACAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATACCTTC
1 TAGAAACATGAAGTGA-AAGCCATCCGTTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
11817562 GAAAACCTAGTTACTCACTTTAAAGGGTTTTATGGTCTTATAAATTATTTTAAGTTGAATTG-TT
65 GAAAGCCTAGTTACTCACTTTAAATGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTGTTT
11817626 TTTCA-TTTTGGTT-CAAATAGATCATAATTTAATGTTTGCAT-
130 TTTCATTTTTGGTTAC-AATAGATCATAATTTAATGTTTGCATC
* * * *
11817667 TGAGAAACGTGATGTGAAAGCCAT-CGATT-AATAAAAAAAGTCCATTTATAGTCACTTATGCCT
1 T-AGAAACATGAAGTGAAAGCCATCCG-TTGAA-AAGAAAAGTCCATTTATAGTCACTCATGCCT
* *
11817730 TCGACAGCCTAGTTACTCGCTTTAAATGGTTTTA
63 TCGAAAGCCTAGTTACTCACTTTAAATGGTTTTA
11817764 AGTTGATTTT
Statistics
Matches: 372, Mismatches: 53, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
169 5 0.01
170 110 0.30
171 81 0.22
172 173 0.47
173 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (172 bp):
TAGAAACATGAAGTGAAAGCCATCCGTTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
AAAGCCTAGTTACTCACTTTAAATGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTGTTTT
TTCATTTTTGGTTACAATAGATCATAATTTAATGTTTGCATC
Found at i:11817882 original size:152 final size:150
Alignment explanation
Indices: 11817609--11817915 Score: 375
Period size: 152 Copynumber: 2.0 Consensus size: 150
11817599 TTATAAATTA
*
11817609 TTTTAAGTTGAATTGTTTTTCATTTTGGTTCAAATAGATCATAATTTAATGTTTGCATTGAGAAA
1 TTTTAAGTTGAATTGTTTTTCATTTTGGTTAAAATAGATCATAATTTAATGTTTGCATTGAGAAA
* * * * * * * * * *
11817674 CGTGATGTGAAAGCCATCGATTAATAAAAAAAGTCCATTTATAGTCACTTATGCCTTCGACAGCC
66 CATGAAGCGAAAGCCATCCATTAACAAAAAAAGTCCACTTATAGTCACTCAAGCCTTCGAAAGCA
* *
11817739 TAGTTACTCGCTTTAAATGG
131 TAGCTACTAGCTTTAAATGG
* * * * *
11817759 TTTTAAGTTG-ATTTTGTTTTCATTTTTTGGTTAAAAATATATCATAATTTGATGTTTTCATTGG
1 TTTTAAGTTGAATTGT-TTTTCA--TTTTGGTT-AAAATAGATCATAATTTAATGTTTGCATTGA
* * *
11817823 GAAACATGAAGCGAAA-CCATCCATTCACAAGAATAGTCCACTTATAGTCACTCAAGCCTTCGAA
62 GAAACATGAAGCGAAAGCCATCCATTAACAAAAAAAGTCCACTTATAGTCACTCAAGCCTTCGAA
11817887 AGCATAGCTACTAGCTTTAAATGG
127 AGCATAGCTACTAGCTTTAAATGG
11817911 TTTTA
1 TTTTA
11817916 TAATCTTATA
Statistics
Matches: 132, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
149 4 0.03
150 16 0.12
152 73 0.55
153 39 0.30
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.38
Consensus pattern (150 bp):
TTTTAAGTTGAATTGTTTTTCATTTTGGTTAAAATAGATCATAATTTAATGTTTGCATTGAGAAA
CATGAAGCGAAAGCCATCCATTAACAAAAAAAGTCCACTTATAGTCACTCAAGCCTTCGAAAGCA
TAGCTACTAGCTTTAAATGG
Found at i:11819309 original size:42 final size:42
Alignment explanation
Indices: 11819250--11819367 Score: 191
Period size: 42 Copynumber: 2.8 Consensus size: 42
11819240 GTGGACCCGA
* *
11819250 CTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACTTAG
1 CTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTAG
*
11819292 CTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTGG
1 CTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTAG
* *
11819334 CTATGTGCGAGTGGGAGTGCGCATAAGTCGTTGC
1 CTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
11819368 ATATAAGATT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.20, C:0.19, G:0.35, T:0.25
Consensus pattern (42 bp):
CTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTAG
Found at i:11822186 original size:358 final size:357
Alignment explanation
Indices: 11821669--11822384 Score: 1360
Period size: 358 Copynumber: 2.0 Consensus size: 357
11821659 CCAATTATCT
*
11821669 TCCTTGTCTTGCACTCCATTAATTTTATTGACTTTCGGTATAATTAAATACGAAAACAGCTCAGC
1 TCCTTGTCTTGCACTCCAATAATTTTATTGACTTTCGGTATAATTAAATACGAAAACAGCTCAGC
11821734 TTCCTCCTCACTTTATTTTTGCAATCCTTACTAAATCAAAATTTTATATTCCCCATATTCCATAA
66 TTCCTCCTCACTTTATTTTTGCAATCCTTACTAAATCAAAATTTTATATTCCCCATATTCCATAA
* * **
11821799 TTTAACTTCATTGGGCTATATTTGTGCCCATTTATTACCTCATAGTGTCATGGCATCACTTGGTA
131 TTTAACTTCATTGGACTATATTTGTGCCCAATTATTACCTCATAGTGTCATGGCATCACTAAGTA
11821864 ATCCCCTTCATGCTTAGATTACAATCATCAACTTAATCATGGTACCCATTTCGAATGTCATTTAT
196 ATCCCCTTCATGCTTAGATTACAATCATCAACTTAATCATGGTACCCATTTCGAATGTCATTTAT
11821929 AACCTTATTGCTTCCTTCTATAACCTTCCTCAATAATTATATTACCAATTTATCTCTGTTATAAA
261 AACCTTATTGCTTCCTTCTATAACCTTCCTCAATAATTATATTACCAATTTATCTCTGTTATAAA
11821994 AAAAAATTTCCATATTTATCCCGTCATTTAAA
326 AAAAAATTTCCATATTTATCCCGTCATTTAAA
*
11822026 TNCCTTGTCTTGCACTCCAATAATTTTATTGACTTTCGGTATAATTAACTACGAAAACAGCTCAG
1 T-CCTTGTCTTGCACTCCAATAATTTTATTGACTTTCGGTATAATTAAATACGAAAACAGCTCAG
11822091 CTTCCTCCTCACTTTATTTTTGCAATCCTTACTAAATCAAAATTTTATATTCCCCATATTCCATA
65 CTTCCTCCTCACTTTATTTTTGCAATCCTTACTAAATCAAAATTTTATATTCCCCATATTCCATA
*
11822156 ATTTAACTTCATTGGATTATATTTGTGCCCAATTATTACCTCATAGTGTCATGGCATCACTAAGT
130 ATTTAACTTCATTGGACTATATTTGTGCCCAATTATTACCTCATAGTGTCATGGCATCACTAAGT
11822221 AATCCCCTTCATGCTTAGATTACAATCATCAACTTAATCATGGTACCCATTTCGAATGTCATTTA
195 AATCCCCTTCATGCTTAGATTACAATCATCAACTTAATCATGGTACCCATTTCGAATGTCATTTA
11822286 TAACCTTATTGCTTCCTTCTATAACCTTCCTCAATAATTATATTACCAATTTATCTCTGTTATAA
260 TAACCTTATTGCTTCCTTCTATAACCTTCCTCAATAATTATATTACCAATTTATCTCTGTTATAA
11822351 AAAAAAATTTCCATATTTATCCCGTCATTTAAA
325 AAAAAAATTTCCATATTTATCCCGTCATTTAAA
11822384 T
1 T
11822385 AGCTACTTTA
Statistics
Matches: 351, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
357 1 0.00
358 350 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (357 bp):
TCCTTGTCTTGCACTCCAATAATTTTATTGACTTTCGGTATAATTAAATACGAAAACAGCTCAGC
TTCCTCCTCACTTTATTTTTGCAATCCTTACTAAATCAAAATTTTATATTCCCCATATTCCATAA
TTTAACTTCATTGGACTATATTTGTGCCCAATTATTACCTCATAGTGTCATGGCATCACTAAGTA
ATCCCCTTCATGCTTAGATTACAATCATCAACTTAATCATGGTACCCATTTCGAATGTCATTTAT
AACCTTATTGCTTCCTTCTATAACCTTCCTCAATAATTATATTACCAATTTATCTCTGTTATAAA
AAAAAATTTCCATATTTATCCCGTCATTTAAA
Found at i:11823278 original size:11 final size:11
Alignment explanation
Indices: 11823238--11823276 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
11823228 CACTGTAAAT
11823238 TTTAAAACAGC
1 TTTAAAACAGC
* *
11823249 TTTAAAATAAC
1 TTTAAAACAGC
*
11823260 TTTAAACCAGC
1 TTTAAAACAGC
11823271 TTTAAA
1 TTTAAA
11823277 CCCAAAAACT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (11 bp):
TTTAAAACAGC
Found at i:11823295 original size:22 final size:22
Alignment explanation
Indices: 11823270--11823326 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
11823260 TTTAAACCAG
*
11823270 CTTTAAACCCAAAAACTCTGAT
1 CTTTAAAACCAAAAACTCTGAT
* **
11823292 CTTTAAAATCAAAAGTTCTGAT
1 CTTTAAAACCAAAAACTCTGAT
11823314 CTTTAAAACCAAA
1 CTTTAAAACCAAA
11823327 TGCTCTAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (22 bp):
CTTTAAAACCAAAAACTCTGAT
Found at i:11825997 original size:2 final size:2
Alignment explanation
Indices: 11825990--11826032 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
11825980 NNNNNNNNNN
11825990 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11826032 T
1 T
11826033 TTTTTTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11826664 original size:19 final size:19
Alignment explanation
Indices: 11826600--11826651 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
11826590 TTAATATTTT
11826600 AATATTATTTTATTAATAA
1 AATATTATTTTATTAATAA
11826619 AATATTATTTTATTAATAA
1 AATATTATTTTATTAATAA
11826638 AATATTATTTTATT
1 AATATTATTTTATT
11826652 CTAAAAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
AATATTATTTTATTAATAA
Found at i:11827222 original size:171 final size:169
Alignment explanation
Indices: 11826914--11827245 Score: 389
Period size: 171 Copynumber: 1.9 Consensus size: 169
11826904 TATAGTCATT
* * * ** * *
11826914 CATGCCTTTGTAAGCCTTATTGCTCGCTTTAAGTTGTTTTATAACATAATAAATGGTTTTAGATT
1 CATGCCTTTGAAAGCCTTATTACTCGCTGTAAGCGGTTTTATAACATAATAAATGATTTTAAATT
* ** *
11826979 GAATTATTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCATCGGAAAATGTAAAGC
66 GAATTATTTTTCAATTTTCACTAAAACAGATCATAATTGGATGCTTGCATCGGAAAATG-AAAGC
11827044 AAAAGCCATCCATTGACAAAAAAAGTCCATTTATAATCAAC
130 AAAAGCCAT-CATTGACAAAAAAAGTCCATTTATAATCAAC
* * * *
11827085 CATGCCTTTGAAAGCCTTATTACTTGCTGTAAGCGGTTTTATAACTTTATGAATGATTTTAAATT
1 CATGCCTTTGAAAGCCTTATTACTCGCTGTAAGCGGTTTTATAACATAATAAATGATTTTAAATT
* * * * * *
11827150 GTATTGTTTTTCAATTTTCATTGAAAA-AGATCATAATTTGATGCTTGCTTTGAGAAACATG-AA
66 GAATTATTTTTCAATTTTCACT-AAAACAGATCATAATTGGATGCTTGCATCG-GAAA-ATGAAA
* * *
11827213 GCGAAAGCCATCATTGACTAGAAAAGTCCATTT
128 GCAAAAGCCATCATTGACAAAAAAAGTCCATTT
11827246 GTAGTCTCTT
Statistics
Matches: 134, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
170 20 0.15
171 103 0.77
172 8 0.06
173 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (169 bp):
CATGCCTTTGAAAGCCTTATTACTCGCTGTAAGCGGTTTTATAACATAATAAATGATTTTAAATT
GAATTATTTTTCAATTTTCACTAAAACAGATCATAATTGGATGCTTGCATCGGAAAATGAAAGCA
AAAGCCATCATTGACAAAAAAAGTCCATTTATAATCAAC
Found at i:11827393 original size:89 final size:89
Alignment explanation
Indices: 11827227--11827403 Score: 218
Period size: 89 Copynumber: 2.0 Consensus size: 89
11827217 AAGCCATCAT
* *
11827227 TGACTAGAAAAGTCCATTTGTAGTCTCTTATGTCGTCAATAGCCTTGTTACATGCTTTAAATGGT
1 TGACAAGAAAAGTCCATTTGTAGTCACTTATGTCGTCAATAGCCTTGTTACATGCTTTAAATGGT
**
11827292 TTGATATTCTTATAAATGATTTTA
66 TTGATAACCTTATAAATGATTTTA
* * *
11827316 TGACAAGAAAAGTCCATTTGTAGTCACTTATG-CATTTGAA-AGCCTTGTTAC-TCGCTTTAAGT
1 TGACAAGAAAAGTCCATTTGTAGTCACTTATGTC--GTCAATAGCCTTGTTACAT-GCTTTAAAT
*
11827378 GGTTT-TTAAACCTTATAAATGATTTT
63 GGTTTGAT-AACCTTATAAATGATTTT
11827404 TAATTGATTA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
88 3 0.04
89 70 0.92
90 3 0.04
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (89 bp):
TGACAAGAAAAGTCCATTTGTAGTCACTTATGTCGTCAATAGCCTTGTTACATGCTTTAAATGGT
TTGATAACCTTATAAATGATTTTA
Found at i:11827856 original size:171 final size:173
Alignment explanation
Indices: 11827410--11827883 Score: 474
Period size: 172 Copynumber: 2.8 Consensus size: 173
11827400 TTTTTAATTG
* * * * * * * *
11827410 ATTAAAACATATCATAATTGGATGTTCTGCAACAAGAAACATGATGCAAGAGCCATCCACCGACA
1 ATTAAAACATATCATAATTTGATGTTCTGCATCAGGAAACGTGATGCAAAAGCCATCCATCAATA
* * *
11827475 AGAAAAGTCCATTTATAGTCACTCATACCTTTGAAAGCCTTGTTGCTCGCTTTAAATGGTTTTAT
66 AGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTGCTCGCTTCAAATGGTTTTAT
* * * *
11827540 AACTTTATAAATAATTTTACATTGAAATTGTTTTTTATTTTTC
131 AACTTTATAAATAATTTTACATCGAAATTGTTTTTCACTTTAC
* ** * * **
11827583 ATTAAAAGATATCATAATTTGATGTT-TGCATTGGGAAACGTGAGGCAAAAGACATCCAT-TGTC
1 ATTAAAACATATCATAATTTGATGTTCTGCATCAGGAAACGTGATGCAAAAGCCATCCATCAAT-
* * * * * * *
11827646 AAGAAAAGTCCATTTACAATTACCCATGCCTTTGAAAGCCTTATTGCTTGCTTCAAGTGGTTTTC
65 AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTGCTCGCTTCAAATGGTTTTA
* * *
11827711 TAACTTTATAAATGATTTTGA-ATCG-AGTT-TTTTTCACTTTAG
130 TAACTTTATAAATAATTTT-ACATCGAAATTGTTTTTCACTTTAC
* * *
11827753 GTTAAAACACT-TGATAATTTGATGTTCTGCATCAGGAAACGTGATGCAATAGCCATCCATCAAT
1 ATTAAAACA-TATCATAATTTGATGTTCTGCATCAGGAAACGTGATGCAAAAGCCATCCATCAAT
* * * * * * * * * *
11827817 AAGAAAAGTCCATTGATAGCCACTTATGTCTTGGAAAGCCTTGTTACACGTTTTAAATGGTTTTA
65 AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTGCTCGCTTCAAATGGTTTTA
11827882 TA
130 TA
11827884 TTCTTATAAA
Statistics
Matches: 238, Mismatches: 58, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
170 30 0.13
171 82 0.34
172 101 0.42
173 25 0.11
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (173 bp):
ATTAAAACATATCATAATTTGATGTTCTGCATCAGGAAACGTGATGCAAAAGCCATCCATCAATA
AGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTGCTCGCTTCAAATGGTTTTAT
AACTTTATAAATAATTTTACATCGAAATTGTTTTTCACTTTAC
Found at i:11827980 original size:89 final size:89
Alignment explanation
Indices: 11827815--11827980 Score: 190
Period size: 89 Copynumber: 1.9 Consensus size: 89
11827805 CCATCCATCA
* * * * *
11827815 ATAAGAAAAGTCCATTGATAGCCACTTATGTCTTGGAAAGCCTTGTTACACGTTTTAAATGGTTT
1 ATAAGAAAAGTCCATTGATAGCCACTCATGCCTTCGAAAGACTTGTTACACGCTTTAAATGGTTT
*
11827880 TATATTCTTATAAATGATTTGAAG
66 TATACTCTTATAAATGATTTGAAG
* * * * * * * *
11827904 ATAAGAAGAGTCCATTTATAGTCACTCATGCCTTCGTAAGACTTGTTTCTCGCTTTAAGTTGTTT
1 ATAAGAAAAGTCCATTGATAGCCACTCATGCCTTCGAAAGACTTGTTACACGCTTTAAATGGTTT
11827969 TATAACT-TTATA
66 TAT-ACTCTTATA
11827981 TATGGTTTCA
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
89 60 0.97
90 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (89 bp):
ATAAGAAAAGTCCATTGATAGCCACTCATGCCTTCGAAAGACTTGTTACACGCTTTAAATGGTTT
TATACTCTTATAAATGATTTGAAG
Found at i:11828197 original size:170 final size:170
Alignment explanation
Indices: 11827906--11828308 Score: 461
Period size: 170 Copynumber: 2.4 Consensus size: 170
11827896 ATTTGAAGAT
* * * * * * * * *
11827906 AAGAAGAGTCCATTTATAGTCACTCATGCCTTCGTAAGACTTGTTTCTCGCTTTAAGTTGTTTTA
1 AAGAAAAGTCCATTTGTAATAACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTA
* * * **
11827971 TAACTTTATATATGGTTTCAAATTGAATTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGAT
66 TAACTTTATAAATGATTTCAAATTGAATTTTTTTCAATTTTCATTAAAATAGATCATAATTGGAT
* *
11828036 GT-TTGCATCGGCAAATGTGAAGCAAAAGCCATCCATTGAG
131 -TCTTGCATCGGCAAACGTGAAGCAAAAGCCATCCATTGAC
*
11828076 AAGAAAAGTCCATTTGTAATGAAC-CATGCCTTCGAAAGCCTTATTACTTGCTTTAAGTGGTTTT
1 AAGAAAAGTCCATTTGTAAT-AACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTT
* * * *
11828140 ATAACTTTGTAAATGATTTTAAATTGTATTTTTTTCAATTTTCATTGAAAA-AGATCATAATTTG
65 ATAACTTTATAAATGATTTCAAATTGAATTTTTTTCAATTTTCATT-AAAATAGATCATAATTGG
* * *
11828204 ATTCTTGCTTTGGGAAACGTGAAGCAAAAGCCATCCATTGAC
129 ATTCTTGCATCGGCAAACGTGAAGCAAAAGCCATCCATTGAC
* * * ** * * * *
11828246 TAGAAATGTCCATTTGTAGTCTCTCATGTCTTCGATAGCCTTGTTACATGCTTTAAATGGTTT
1 AAGAAAAGTCCATTTGTAATAACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTT
11828309 GATTTTCTTT
Statistics
Matches: 195, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
169 2 0.01
170 187 0.96
171 6 0.03
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (170 bp):
AAGAAAAGTCCATTTGTAATAACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTA
TAACTTTATAAATGATTTCAAATTGAATTTTTTTCAATTTTCATTAAAATAGATCATAATTGGAT
TCTTGCATCGGCAAACGTGAAGCAAAAGCCATCCATTGAC
Found at i:11828549 original size:261 final size:258
Alignment explanation
Indices: 11828076--11829091 Score: 985
Period size: 260 Copynumber: 3.9 Consensus size: 258
11828066 ATCCATTGAG
* * * ** * * ** *
11828076 AAGAAAAGTCCATTTGTAATGAACCATGCCTTCGAAAGCCTTATTACTTGCTTTAAGTGGTTTTA
1 AAGAAAAGTCCATTTATAGTCATTCATGCCTTCAAAAGCCTTCTTACTCACTTTAAATGGTTTTA
* * *
11828141 TAACTTTGTAAATGATTTTAAATTGTA-TTTTTTTCAATTTTCATTGAAAA-AGATCATAATTTG
66 TAACTTTATAAATGATTTTAAATTGAACTTTTTTTCATTTTTCATT-AAAACAGATCATAATTTG
* * * * * * *
11828204 ATTCTTGCTTTGGGAAACGTGAAGCAAAAGCCATCCATTGACTAGAAATGTCCATTTGTAGTCTC
130 ATT-TTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGTCAC
* * * * * * * *
11828269 TCATGTCTTCGATAGCCTTGTTACATGCTTTAAATGGTTTGATTTTCTTTAAAATAATTTTATGA
194 TCATGCCCTCGAAAGCCTTGTTACACGCTTTGAATGGTTTTATATTC-TTAAAATAATTTTAAGA
11828334 C
258 C
* * * * *
11828335 AAGAAAAGTCCATTTGTAGTCGCTT-ATGCCTTTAAAAGCCTTCTTACTCGCTTTAAGTGGTTTT
1 AAGAAAAGTCCATTTATAGTC-ATTCATGCCTTCAAAAGCCTTCTTACTCACTTTAAATGGTTTT
* * * *
11828399 ATAACTTTCTAAATGATTTTACATGGAACTTGTTTTTCATTTTTCATTAAAACATATCATAATTT
65 ATAACTTTATAAATGATTTTAAATTGAACTT-TTTTTCATTTTTCATTAAAACAGATCATAATTT
*
11828464 GATATTTGCATTAGGAAACGTGAAGCAAAAGACATCCATTGTCAAGAAAAGTCCATTTATAGTCA
129 GAT-TTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGTCA
* * * *
11828529 CTCATGCCCTCGAAAGCCTTGTTACACGTTTTGAATTGTTTTATATTCTTATAAATTATTTGAAG
193 CTCATGCCCTCGAAAGCCTTGTTACACGCTTTGAATGGTTTTATATTCTTA-AAATAATTTTAAG
11828594 AC
257 AC
* * * *
11828596 AAGAAAAGTCCATTTATAGTCATTCATGCTTTCAAAAG-CTTAGTTATTCACTTTAAATTGTTTT
1 AAGAAAAGTCCATTTATAGTCATTCATGCCTTCAAAAGCCTT-CTTACTCACTTTAAATGGTTTT
* ** * * *
11828660 ATAA-TCTTATAAATGATTTTAAATT-AAATATTTTTTCATTTTTGGTTCAAACAGATTACAA-T
65 ATAACT-TTATAAATGATTTTAAATTGAACT-TTTTTTCATTTTTCATTAAAACAGATCATAATT
* * * * * *
11828722 AGAATGTTTGCCTCAGGAAAGGTGAAGCGAAAGCCATCCATTATCAAGAAAAGTCCATTTATAGT
128 TG-AT-TTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGT
* * * *
11828787 CACTCACGCCCTCAAAAGCCTTATTACACGCTTTGAATGGTTTTATATTCTTAAAATTGATTTTA
191 CACTCATGCCCTCGAAAGCCTTGTTACACGCTTTGAATGGTTTTATATTCTTAAAA-TAATTTTA
11828852 AGAC
255 AGAC
* * * * * *
11828856 AAGAAAAGTCCATTTATAGTCATTCATACCTTCGAATGCCTACTTACTCACTCTAAATGGTTTCA
1 AAGAAAAGTCCATTTATAGTCATTCATGCCTTCAAAAGCCTTCTTACTCACTTTAAATGGTTTTA
* * * *** * * *
11828921 TAACCTTATAAATAATTTTAAGTTGAACTTTTTTTCATTTTAGGTTCAAACAGATTATAA-TAGA
66 TAACTTTATAAATGATTTTAAATTGAACTTTTTTTCATTTTTCATTAAAACAGATCATAATTTG-
* * * * * * * *
11828985 ATGTTTTCCTAAGGAAAGGTGAAGCGAAAGCTATCTATTG---AGAGAAAGTCCATTTATTGTCA
130 AT-TTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGTCAAGA-AAAGTCCATTTATAGTCA
* * * * *
11829047 CTCATACCTTTGAAAGCCTTGTTACTCACTTT-AAGTGGTTTTATA
193 CTCATGCCCTCGAAAGCCTTGTTACACGCTTTGAA-TGGTTTTATA
11829092 ACTTTATAAA
Statistics
Matches: 641, Mismatches: 99, Indels: 35
0.83 0.13 0.05
Matches are distributed among these distances:
257 5 0.01
258 51 0.08
259 83 0.13
260 295 0.46
261 206 0.32
262 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (258 bp):
AAGAAAAGTCCATTTATAGTCATTCATGCCTTCAAAAGCCTTCTTACTCACTTTAAATGGTTTTA
TAACTTTATAAATGATTTTAAATTGAACTTTTTTTCATTTTTCATTAAAACAGATCATAATTTGA
TTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGTCACTC
ATGCCCTCGAAAGCCTTGTTACACGCTTTGAATGGTTTTATATTCTTAAAATAATTTTAAGAC
Found at i:11828657 original size:89 final size:88
Alignment explanation
Indices: 11828506--11828678 Score: 233
Period size: 89 Copynumber: 1.9 Consensus size: 88
11828496 CATCCATTGT
* *
11828506 CAAGAAAAGTCCATTTATAGTCACTCATGCCCTCGAAAGCCTTGTTACACGTTTTGAATTGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCCTCAAAAGCCTTGTTACACG-TTTAAATTGTTTT
* *
11828571 ATATTCTTATAAATTATTTGAAGA
65 ATAATCTTATAAATGATTTGAAGA
* **
11828595 CAAGAAAAGTCCATTTATAGTCATTCATGCTTTCAAAAG-CTTAGTTATTCAC-TTTAAATTGTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCCTCAAAAGCCTT-GTTA--CACGTTTAAATTGTT
11828658 TTATAATCTTATAAATGATTT
63 TTATAATCTTATAAATGATTT
11828679 TAAATTAAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
88 3 0.04
89 68 0.92
91 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (88 bp):
CAAGAAAAGTCCATTTATAGTCACTCATGCCCTCAAAAGCCTTGTTACACGTTTAAATTGTTTTA
TAATCTTATAAATGATTTGAAGA
Found at i:11828939 original size:89 final size:89
Alignment explanation
Indices: 11828766--11828942 Score: 196
Period size: 89 Copynumber: 2.0 Consensus size: 89
11828756 CATCCATTAT
* * * * *
11828766 CAAGAAAAGTCCATTTATAGTCACTCACGCCCTCAAAAGCCTTATTACACGCTTTGAATGGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCACACCCTCAAAAGCCTTATTACACACTCTAAATGGTTTC
** *
11828831 ATATTCTTAAAATTGATTTTAAGA
66 ATAACCTTAAAATTAATTTTAAGA
* * * * * *
11828855 CAAGAAAAGTCCATTTATAGTCATTCATACCTTCGAATGCC-TACTTACTCACTCTAAATGGTTT
1 CAAGAAAAGTCCATTTATAGTCACTCACACCCTCAAAAGCCTTA-TTACACACTCTAAATGGTTT
11828919 CATAACCTTATAAA-TAATTTTAAG
65 CATAACCTTA-AAATTAATTTTAAG
11828943 TTGAACTTTT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
88 2 0.03
89 67 0.93
90 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (89 bp):
CAAGAAAAGTCCATTTATAGTCACTCACACCCTCAAAAGCCTTATTACACACTCTAAATGGTTTC
ATAACCTTAAAATTAATTTTAAGA
Found at i:11829268 original size:172 final size:171
Alignment explanation
Indices: 11829029--11829387 Score: 406
Period size: 172 Copynumber: 2.1 Consensus size: 171
11829019 CTATTGAGAG
* * * * * * ** ** * *
11829029 AAAGTCCATTTATTGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTAAGTGGTTTTATAAC
1 AAAGTCCATTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTATAAC
* * ** *
11829094 TTTATAAATGATTTTACATTGAACTTGTTTTTT-ATTTTTTATTAAAACATATCATAATTTGATG
66 TTTATAAATGACTTTACATTG-A--GGTTTTTTCATTTTAGATTAAAACAGATCATAATTTGATG
**
11829158 TT-TGCATTTGGAAACGTGAAGTG-AA-AGCCATCCA-CTG-TCAAGA
128 TTCTGCATCAGGAAACGTG-A-TGCAATAGCCATCCATC-GAT-AAGA
* *
11829201 AATGTCCATTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTCTAAC
1 AAAGTCCATTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTATAAC
* *
11829266 TTTATAAATGACTTTAGATTGAGGTTTTTTCATTTTAGGTTAAAACAGATCATAATTTGATGTTC
66 TTTATAAATGACTTTACATTGAGGTTTTTTCATTTTAGATTAAAACAGATCATAATTTGATGTTC
11829331 TGCATCAGGAAACGTGATGCAATAGCCATCCATCGATAAGA
131 TGCATCAGGAAACGTGATGCAATAGCCATCCATCGATAAGA
11829372 AAAGTCCATTTATAGT
1 AAAGTCCATTTATAGT
11829388 CACTTATGGT
Statistics
Matches: 157, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
169 9 0.06
170 32 0.20
171 44 0.28
172 72 0.46
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (171 bp):
AAAGTCCATTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTATAAC
TTTATAAATGACTTTACATTGAGGTTTTTTCATTTTAGATTAAAACAGATCATAATTTGATGTTC
TGCATCAGGAAACGTGATGCAATAGCCATCCATCGATAAGA
Found at i:11829412 original size:171 final size:171
Alignment explanation
Indices: 11828855--11829414 Score: 464
Period size: 170 Copynumber: 3.3 Consensus size: 171
11828845 GATTTTAAGA
* * * * ** *
11828855 CAAGAAAAGTCCATTTATAGTCATTCATACCTTCGAATGCCTACTTACTCAC-TCTAAATGGT-T
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTC-AAGTGGTCT
* * * * * * *
11828918 TCATAACCTTATAAATAATTTTA-AGTTGAAC-TTTTTTTCATTTTAGGTTCAAACAGATTATAA
65 T-ATAACTTTATAAATGACTTTACA-TTGAACGGTTTTTT-ATTTTAGATTAAAACAGATCATAA
* * * * * * * *
11828981 -TAGAATGTTTTCCTAAGGAAAGGTGAAGCGAAAGCTATCTA-T-T
127 TTTG-ATGTTTGCATCAGGAAACGTGAAGTGAAAGCCATCCACTGT
* * * * *
11829024 -GAGAGAAAGTCCATTTATTGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTAAGTGGTTT
1 CAAGA-AAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTCAAGTGGTCT
* * ** *
11829088 TATAACTTTATAAATGATTTTACATTGAACTTGTTTTTTATTTTTTATTAAAACATATCATAATT
65 TATAACTTTATAAATGACTTTACATTGAAC-GGTTTTTTATTTTAGATTAAAACAGATCATAATT
**
11829153 TGATGTTTGCATTTGGAAACGTGAAGTGAAAGCCATCCACTGT
129 TGATGTTTGCATCAGGAAACGTGAAGTGAAAGCCATCCACTGT
* * * * * ** **
11829196 CAAGAAATGTCCATTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTCAAGTGGTCTT
* * *
11829261 CTAACTTTATAAATGACTTTAGATTG-A-GGTTTTTTCATTTTAGGTTAAAACAGATCATAATTT
66 ATAACTTTATAAATGACTTTACATTGAACGGTTTTTT-ATTTTAGATTAAAACAGATCATAATTT
11829324 GATGTTCTGCATCAGGAAACGTG-A-TGCAATAGCCATCCA-TCGAT
130 GATGTT-TGCATCAGGAAACGTGAAGTG-AA-AGCCATCCACT-G-T
* **
11829368 -AAGAAAAGTCCATTTATAGTCACTTATGGTTTTGAAAGCCTTGTTAC
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTAC
11829415 ACGCTTTAAA
Statistics
Matches: 314, Mismatches: 61, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
168 3 0.01
169 81 0.26
170 84 0.27
171 71 0.23
172 72 0.23
173 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (171 bp):
CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTCAAGTGGTCTT
ATAACTTTATAAATGACTTTACATTGAACGGTTTTTTATTTTAGATTAAAACAGATCATAATTTG
ATGTTTGCATCAGGAAACGTGAAGTGAAAGCCATCCACTGT
Found at i:11829444 original size:171 final size:170
Alignment explanation
Indices: 11828855--11829447 Score: 463
Period size: 171 Copynumber: 3.5 Consensus size: 170
11828845 GATTTTAAGA
* * * * ** * * * *
11828855 CAAGAAAAGTCCATTTATAGTCATTCATACCTTCGAATGCCTACTTACTCACTCTAAATGGTTTC
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTT
* * * * * * *
11828920 ATAACCTTATAAATAATTTTA-AGTTGAAC-TTTTTTTCATTTTAGGTTCAAACAGATTATAA-T
66 AT-ATCTTATAAATGACTTTACA-TTGAACGGTTTTTT-ATTTTAGATTAAAACAGATCATAATT
* * * * * * * *
11828982 AGAATGTTTTCCTAAGGAAAGGTGAAGCGAAAGCTATCTA-T-T
128 TG-ATGTTTGCATCAGGAAACGTGAAGTGAAAGCCATCCACTGT
* * * *
11829024 -GAGAGAAAGTCCATTTATTGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTAAGTGGTTT
1 CAAGA-AAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTT
* * * ** *
11829088 TATAACTTTATAAATGATTTTACATTGAACTTGTTTTTTATTTTTTATTAAAACATATCATAATT
65 TATATC-TTATAAATGACTTTACATTGAAC-GGTTTTTTATTTTAGATTAAAACAGATCATAATT
**
11829153 TGATGTTTGCATTTGGAAACGTGAAGTGAAAGCCATCCACTGT
128 TGATGTTTGCATCAGGAAACGTGAAGTGAAAGCCATCCACTGT
* * * * * ** * * *
11829196 CAAGAAATGTCCATTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTT
* * * *
11829261 CTAACTTTATAAATGACTTTAGATTG-A-GGTTTTTTCATTTTAGGTTAAAACAGATCATAATTT
66 ATATC-TTATAAATGACTTTACATTGAACGGTTTTTT-ATTTTAGATTAAAACAGATCATAATTT
11829324 GATGTTCTGCATCAGGAAACGTG-A-TGCAATAGCCATCCA-TCGAT
129 GATGTT-TGCATCAGGAAACGTGAAGTG-AA-AGCCATCCACT-G-T
* ** * *
11829368 -AAGAAAAGTCCATTTATAGTCACTTATGGTTTTGAAAGCCTTGTTACACGCTTTAAATGGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTT
11829432 ATATTCTTATAAATGA
66 ATA-TCTTATAAATGA
11829448 TTTGAGGACA
Statistics
Matches: 339, Mismatches: 69, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
168 5 0.01
169 82 0.24
170 81 0.24
171 95 0.28
172 73 0.22
173 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (170 bp):
CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTT
ATATCTTATAAATGACTTTACATTGAACGGTTTTTTATTTTAGATTAAAACAGATCATAATTTGA
TGTTTGCATCAGGAAACGTGAAGTGAAAGCCATCCACTGT
Found at i:11829531 original size:89 final size:89
Alignment explanation
Indices: 11829368--11829535 Score: 232
Period size: 89 Copynumber: 1.9 Consensus size: 89
11829358 ATCCATCGAT
* ** *
11829368 AAGAAAAGTCCATTTATAGTCACTTATGGTTTTGAAAGCCTTGTTACACGCTTTAAATGGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGGCCTTCAAAGCCTTGTTACACGCTTTAAATGGTTTTA
*
11829433 TATTCTTATAAATGATTTGAGGAC
66 TACTCTTATAAATGATTTGAGGAC
* * *
11829457 AAGAAAAGTCCATTTATAGTCACTCAT-GCCTTCATAAGCCTTGTTACTCGCTTTAAGTTGTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGGCCTTCA-AAGCCTTGTTACACGCTTTAAATGGTTTT
11829521 ATAACT-TTATAAATG
65 AT-ACTCTTATAAATG
11829536 GTTTTAAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
88 4 0.06
89 63 0.91
90 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (89 bp):
AAGAAAAGTCCATTTATAGTCACTCATGGCCTTCAAAGCCTTGTTACACGCTTTAAATGGTTTTA
TACTCTTATAAATGATTTGAGGAC
Found at i:11829749 original size:601 final size:600
Alignment explanation
Indices: 11828690--11829810 Score: 1436
Period size: 601 Copynumber: 1.9 Consensus size: 600
11828680 AAATTAAATA
* * * * *
11828690 TTTTTTCATTTTTGGTTCAAACAGATTACAATAGAATGTTTGCCTCAGGAAAGGTGAAGCGAAAG
1 TTTTTTCATTTTAGGTTAAAACAGATCACAATAGAATGTTTGCATCAGGAAACGTGAAGCGAAAG
*
11828755 CCATCCATTATCAAGAAAAGTCCATTTATAGTCACTCACGCCCTCAAAAGCCTTATTACACGCTT
66 CCATCCATGATCAAGAAAAGTCCATTTATAGTCACTCACGCCCTCAAAAGCCTTATTACACGCTT
* * *
11828820 TGAATGGTTTTATATTCTTAAAATTGATTTTAAGACAAGAAAAGTCCATTTATAGTCATTCATAC
131 TAAATGGTTTTATATTCTTAAAATTGATTTGAAGACAAGAAAAGTCCATTTATAGTCACTCATAC
* *
11828885 CTTCGAATGCCTACTTACTCACTCTAAATGGTTTCATAACCTTATAAATAATTTTAAGTTGAACT
196 CTTCGAAAGCCTACTTACTCACTCTAAATGGTTTCATAACCTTATAAATAATTTTAAATTGAACT
* * * *
11828950 TTTTTTCATTTTAGGTTCAAACAGATTATAATAGAATGTTTTCCTAAGGAAAGGTGAAGCGAAAG
261 TTTTTTCATTTTAGGTTAAAACAGATCATAATAGAATGTTTGCCTAAGGAAAGGTGAAGCAAAAG
* * * * * *
11829015 CTATCTATTGAGAGAAAGTCCATTTATTGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTA
326 CCATCCATTGAAAGAAAGTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCACCTTA
* * *
11829080 AGTGGTTTTATAACTTTATAAATGATTTTACATTGAACTTGTTTTTTATTTTTTATTAAAACATA
391 AGTGGTTTTATAACTTTATAAATGATTTTAAATTGAACTTGTTTTTTAATTTTCATTAAAACATA
* * ** * *
11829145 TCATAATTTGATGTTTGCATTT-GGAAACGTGAAGTGAAAGCCATCCACTGTCAAGAAATGTCCA
456 TCATAATTTGATGTTTGC-TTTAGAAAACATGAAACGAAAGCCATCCACTGACAAGAAAAGTCCA
11829209 TTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTCTAACTTTATAAA
520 TTTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTCTAACTTTATAAA
11829274 TGACTTTAGATTGAGG
585 TGACTTTAGATTGAGG
* * *
11829290 TTTTTTCATTTTAGGTTAAAACAGATCATAATTTG-ATGTTCTGCATCAGGAAACGTGATGC-AA
1 TTTTTTCATTTTAGGTTAAAACAGATCACAA-TAGAATGTT-TGCATCAGGAAACGTGAAGCGAA
* * *** ** *
11829353 TAGCCATCCATCGAT-AAGAAAAGTCCATTTATAGTCACTTATGGTTTTGAAAGCCTTGTTACAC
64 -AGCCATCCAT-GATCAAGAAAAGTCCATTTATAGTCACTCACGCCCTCAAAAGCCTTATTACAC
*
11829417 GCTTTAAATGGTTTTATATTCTTATAAA-TGATTTGAGGACAAGAAAAGTCCATTTATAGTCACT
127 GCTTTAAATGGTTTTATATTCTTA-AAATTGATTTGAAGACAAGAAAAGTCCATTTATAGTCACT
* ** * * * * * * **
11829481 CATGCCTTC-ATAAGCCTTGTTACTCGCTTTAAGTTGTTTTATAACTTTATAAATGGTTTTAAAT
191 CATACCTTCGA-AAGCCTACTTACTCACTCTAAATGGTTTCATAACCTTATAAATAATTTTAAAT
* * * ** *
11829545 TGAA-TTTTTTTCATTTTTA-GTTAAAACAGATCATAATTGGATGTTTGCGTCGGGAAATGTGAA
255 TGAACTTTTTTTCA-TTTTAGGTTAAAACAGATCATAATAGAATGTTTGCCTAAGGAAAGGTGAA
*
11829608 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAAC-CATGCCTTTGAAAGCCTTATT
319 GCAAAAGCCATCCATTGA-AAG-AAAGTCCATTTATAGTC-ACTCATACCTTTGAAAGCCTTATT
** * * *
11829672 ACTTGCCTTGAGTGGTTTTATAACTTTATAAATGATTTTAAATTGTA-TTTTTTTTTAATTTTCA
381 ACTCACCTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAACTTGTTTTTTAATTTTCA
* * * *
11829736 TTGTAAA-ATATCATAATTTGGTGTTTGCTTTAGAAAACATGAAACGAAAGCCATCCATTGACTA
446 TT-AAAACATATCATAATTTGATGTTTGCTTTAGAAAACATGAAACGAAAGCCATCCACTGACAA
11829800 GAAAAGTCCAT
510 GAAAAGTCCAT
11829811 ATGTAGTCTC
Statistics
Matches: 440, Mismatches: 69, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
600 97 0.22
601 257 0.58
602 84 0.19
603 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (600 bp):
TTTTTTCATTTTAGGTTAAAACAGATCACAATAGAATGTTTGCATCAGGAAACGTGAAGCGAAAG
CCATCCATGATCAAGAAAAGTCCATTTATAGTCACTCACGCCCTCAAAAGCCTTATTACACGCTT
TAAATGGTTTTATATTCTTAAAATTGATTTGAAGACAAGAAAAGTCCATTTATAGTCACTCATAC
CTTCGAAAGCCTACTTACTCACTCTAAATGGTTTCATAACCTTATAAATAATTTTAAATTGAACT
TTTTTTCATTTTAGGTTAAAACAGATCATAATAGAATGTTTGCCTAAGGAAAGGTGAAGCAAAAG
CCATCCATTGAAAGAAAGTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCACCTTA
AGTGGTTTTATAACTTTATAAATGATTTTAAATTGAACTTGTTTTTTAATTTTCATTAAAACATA
TCATAATTTGATGTTTGCTTTAGAAAACATGAAACGAAAGCCATCCACTGACAAGAAAAGTCCAT
TTATAGTAACCCATGCCTTCGAAAACCTTGTTGGTTGCTTCAAGTGGTCTTCTAACTTTATAAAT
GACTTTAGATTGAGG
Found at i:11829983 original size:426 final size:427
Alignment explanation
Indices: 11829029--11830138 Score: 1236
Period size: 426 Copynumber: 2.6 Consensus size: 427
11829019 CTATTGAGAG
* * ** *
11829029 AAAGTCCATTTATTGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTAAGTGGTTTTATAAC
1 AAAGTCCATTTATAGACACTCACGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAAC
* * *
11829094 TTTATAAATGATTTTACATTGAACTTGTTTTTTATTTTTTA-TTAAAACATATCATAATTTGATG
66 TTTATAAATGATTTTAAATTGAA-TT-TTTTTCA-TTTTTAGTTAAAACAGATCATAATTTGATG
* * *
11829158 TTTGCATTTGGAAACGTGAAGTGAAAGCCATCCACTGTCAAGAAATGTCCATTTATAGTAACCCA
128 TTTGCATTAGGAAACGTGAAGTGAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGTAA-CCA
* ** * * * * *
11829223 TGCCTTCGAAAACCTTGTTGGTTG-CTTCAAGTGGTCTTCTAACTTTATAAATGACTTTAGATTG
192 TGCCTTCGAAAGCCTTGTTACTTGCCTT-GAGTGGTTTTATAACTTTATAAATGATTTTAAATTG
* * * **
11829287 AGGTTTTTTCATTTTAGGTTAAAACAGATCATAATTTGATGTTCTGCATCAGGAAACGTGATGCA
256 AGGTTTTTTAATTTTA-GTTAAAACAGATCATAATTTGATGTTCTGCATCAGAAAACATGAAACA
* * ** * *
11829352 ATAGCCATCCATCGATAAGAAAAGTCCATTTATAGTCACTTATGGTTTTGAAAGCCTTGTTACAC
320 ATAGCCATCCATCGATAAGAAAAGTCCATATATAGTCACTCATGGTCATCAAA-CATTGTTACAC
* *
11829417 GCTTTAAATGGTTTTATATTCTTATAAATGATTTGAGGACAAGA
384 GCTTTAAATGGTTTGATATTCTTATAAATGATTTGAGGACAACA
* * * *
11829461 AAAGTCCATTTATAGTCACTCATGCC-TTCATAAGCCTTGTTACTCGCTTTAAGTTGTTTTATAA
1 AAAGTCCATTTATAGACACTCACGCCTTTGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAA
* *
11829525 CTTTATAAATGGTTTTAAATTGAATTTTTTTCATTTTTAGTTAAAACAGATCATAATTGGATGTT
65 CTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTAGTTAAAACAGATCATAATTTGATGTT
* ** * ** *
11829590 TGCGTCGGGAAATGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAACCATG
130 TGCATTAGGAAACGTGAAGTGAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGT-AACCATG
* *
11829655 CCTTTGAAAGCCTTATTACTTGCCTTGAGTGGTTTTATAACTTTATAAATGATTTTAAATTGTAT
194 CCTTCGAAAGCCTTGTTACTTGCCTTGAGTGGTTTTATAACTTTATAAATGATTTTAAATTG-A-
** * * * * *
11829720 TTTTTTTTAATTTTCA-TTGTAAA-ATATCATAATTTGGTGTT-TGCTTTAGAAAACATGAAACG
257 GGTTTTTTAATTTT-AGTT-AAAACAGATCATAATTTGATGTTCTGCATCAGAAAACATGAAAC-
* * * *
11829782 AA-AGCCATCCATTGACT-AGAAAAGTCCATATGTAGTCTCTCAT-GTCATCAAA-ATT-TTCCA
319 AATAGCCATCCATCGA-TAAGAAAAGTCCATATATAGTCACTCATGGTCATCAAACATTGTTACA
* * **
11829842 TGCTTTAAATGGTTTGATATTCTTATAAATGATTTTATTACAACA
383 CGCTTTAAATGGTTTGATATTCTTATAAATGATTTGAGGACAACA
* * * *
11829887 AAAGTCCATTTGTAGACACTTACGCCTTTGAAAGCTTTGTTACTCGCTTTAAGTGGTTTTATAAG
1 AAAGTCCATTTATAGACACTCACGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAAC
** * * *
11829952 TTTATAAATGATTTTAAATTGAATTTTTTTCATTTTGGGTTAGAACAGATCATTATTTGATGATT
66 TTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTAGTTAAAACAGATCATAATTTGATGTTT
* * * *
11830017 GCATTAGGAAGCGTGAAGTGAAAGCCATCCATTGTGAAGAAAAGTCTATTTATAGTTACTCATGC
131 GCATTAGGAAACGTGAAGTGAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGTAAC-CATGC
* * *** * * *
11830082 CCTCGAAAGCCTCGTTACACACTTTGAATGGTTTTAT-ATTCTTATAAATGATTTTAA
195 CTTCGAAAGCCTTGTTACTTGCCTTGAGTGGTTTTATAACT-TTATAAATGATTTTAA
11830139 GACAAGAAAA
Statistics
Matches: 572, Mismatches: 93, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
425 4 0.01
426 249 0.44
427 5 0.01
429 12 0.02
430 178 0.31
431 32 0.06
432 91 0.16
433 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (427 bp):
AAAGTCCATTTATAGACACTCACGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAAC
TTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTAGTTAAAACAGATCATAATTTGATGTTT
GCATTAGGAAACGTGAAGTGAAAGCCATCCATTGTCAAGAAAAGTCCATTTATAGTAACCATGCC
TTCGAAAGCCTTGTTACTTGCCTTGAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAGGTT
TTTTAATTTTAGTTAAAACAGATCATAATTTGATGTTCTGCATCAGAAAACATGAAACAATAGCC
ATCCATCGATAAGAAAAGTCCATATATAGTCACTCATGGTCATCAAACATTGTTACACGCTTTAA
ATGGTTTGATATTCTTATAAATGATTTGAGGACAACA
Found at i:11830190 original size:259 final size:253
Alignment explanation
Indices: 11829624--11830395 Score: 690
Period size: 259 Copynumber: 3.0 Consensus size: 253
11829614 GCCATCCATT
** * * *
11829624 GACAAGAAAAGTCCATTTATAGTCAACCATGCCTTTGAAAGCCTTA-TTACTTGCCTTGAGTGGT
1 GACAAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAAAGCC-TAGTTACTCGCTTTAAGTGGT
* * **
11829688 TTTATAACTTTATAAATGATTTTAAATTGTATTTTTTTTTAATTTTCATT-GTAA-AATATCATA
65 TTTATAA-TTTATAAATGATTTTAAATTG-A-ATTTTTTTCATTTTGGTTAG-AACAA-ATCATA
* * * * * ** * *
11829751 ATTTGGTGTTTGCTTTAGAAAACATGAAACGAAAGCCATCCATTGACTAGAAAAGTCCATATGTA
125 ATTTGATGTTTGC-TTAGGAAGCGTGAAGCGAAAGCCATCCATTGAGAAGAAAAGTCCATTTATA
* * * * * *
11829816 GTCT-CTCATGTCATC-AAA--ATTTTCCATGCTTTAAATGGTTTGATATTCTTATAAATGATTT
189 GT-TACTCATGCCATCGAAAGCCTGTTACA-ACTTT-AATGGTTTTATATTCTTATAAATGATTT
*
11829877 TAT
251 TAA
* * * * * * *
11829880 TACAACAAAAGTCCATTTGTAGACACTT-ACGCCTTTGAAAGCTTTGTTACTCGCTTTAAGTGGT
1 GACAAGAAAAGTCCATTTATAGTCA-TTCATGCCTTTGAAAGCCTAGTTACTCGCTTTAAGTGGT
* *
11829944 TTTATAAGTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTGGGTTAGAACAGATCATTATT
65 TTTATAA-TTTATAAATGATTTTAAATTGAATTTTTTTCATTTT-GGTTAGAACAAATCATAATT
* * * *
11830009 TGATGATTGCATTAGGAAGCGTGAAGTGAAAGCCATCCATTGTGAAGAAAAGTCTATTTATAGTT
128 TGATGTTTGC-TTAGGAAGCGTGAAGCGAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTT
*
11830074 ACTCATGCCCTCGAAAGCCTCGTTACACACTTTGAATGGTTTTATATTCTTATAAATGATTTTAA
192 ACTCATGCCATCGAAAGCCT-GTTACA-ACTTT-AATGGTTTTATATTCTTATAAATGATTTTAA
* * *
11830139 GACAAGAAAAGTCCATTTAAAGTCATTCATGCCTTCGAAAGCCTAGTTACTCAG-TTTAAATGGT
1 GACAAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAAAGCCTAGTTACTC-GCTTTAAGTGGT
* * * * *
11830203 TTTGTAATCTTATAAATGATTTTAAGTTGACTTTTTTTCATTTTTGGTTCA-AACAAATTACAA-
65 TTTATAAT-TTATAAATGATTTTAAATTGAATTTTTTTCA-TTTTGGTT-AGAACAAATCATAAT
* * * *
11830266 TAGAATGTTTTTCTTGGGAAAG-GTGAAGCGAAAGCTATCCATTGAGAAG-AAAGTCCATTTATA
127 TTG-ATG-TTTGCTTAGG-AAGCGTGAAGCGAAAGCCATCCATTGAGAAGAAAAGTCCATTTATA
* * * * *
11830329 GTCACTCATGGCTTTGAAAGCCTTGTTACTAACTTTAAGTGGTTTTATA-ACTTTATAAATGATT
189 GTTACTCATGCCATCGAAAGCC-TGTTAC-AACTTTAA-TGGTTTTATATTC-TTATAAATGATT
11830393 TTA
250 TTA
11830396 CATTGAACTT
Statistics
Matches: 421, Mismatches: 73, Indels: 42
0.79 0.14 0.08
Matches are distributed among these distances:
254 13 0.03
255 73 0.17
256 82 0.19
257 3 0.01
258 72 0.17
259 166 0.39
260 12 0.03
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (253 bp):
GACAAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAAAGCCTAGTTACTCGCTTTAAGTGGTT
TTATAATTTATAAATGATTTTAAATTGAATTTTTTTCATTTTGGTTAGAACAAATCATAATTTGA
TGTTTGCTTAGGAAGCGTGAAGCGAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTTACTC
ATGCCATCGAAAGCCTGTTACAACTTTAATGGTTTTATATTCTTATAAATGATTTTAA
Found at i:11830204 original size:89 final size:89
Alignment explanation
Indices: 11830053--11830228 Score: 253
Period size: 89 Copynumber: 2.0 Consensus size: 89
11830043 ATCCATTGTG
* * * * *
11830053 AAGAAAAGTCTATTTATAGTTACTCATGCCCTCGAAAGCCTCGTTACACACTTTGAATGGTTTTA
1 AAGAAAAGTCCATTTAAAGTCACTCATGCCCTCGAAAGCCTAGTTACACACTTTAAATGGTTTTA
*
11830118 TATTCTTATAAATGATTTTAAGAC
66 TAATCTTATAAATGATTTTAAGAC
* * * * *
11830142 AAGAAAAGTCCATTTAAAGTCATTCATGCCTTCGAAAGCCTAGTTACTCAGTTTAAATGGTTTTG
1 AAGAAAAGTCCATTTAAAGTCACTCATGCCCTCGAAAGCCTAGTTACACACTTTAAATGGTTTTA
11830207 TAATCTTATAAATGATTTTAAG
66 TAATCTTATAAATGATTTTAAG
11830229 TTGACTTTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (89 bp):
AAGAAAAGTCCATTTAAAGTCACTCATGCCCTCGAAAGCCTAGTTACACACTTTAAATGGTTTTA
TAATCTTATAAATGATTTTAAGAC
Found at i:11830725 original size:171 final size:171
Alignment explanation
Indices: 11830139--11831005 Score: 891
Period size: 170 Copynumber: 5.1 Consensus size: 171
11830129 ATGATTTTAA
* * * * *
11830139 GACAAGAAAAGTCCATTTAAAGTCATTCATGCCTTCGAAAGCCTAGTTACTCAG-TTTAAATGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACT-AGCTTTAAGTGGT
* * * * * * * *
11830203 TTTGTAA-TCTTATAAATGATTTTAAGTTGACTTTTTTTCATTTTTGGTTCAAACAAATTACAA-
65 TTTATAACT-TTATAAATGATTTTAAATTGACTTTTTTTCATTTTAGATTAAAACAGATCATAAT
* * * *
11830266 TAGAATGTTTTTC-TTGGGAAAGGTGAAGCGAAAGCTATCCATT
129 TTG-ATGTTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATT
* * *
11830309 GAGAAG-AAAGTCCATTTATAGTCACTCATGGCTTTGAAAGCCTTGTTACTAACTTTAAGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTAGCTTTAAGTGGTT
* ** * *
11830373 TTATAACTTTATAAATGATTTTACATTGAACTTGTTTTTCATTTTTCATTAAAACATATCATAGT
66 TTATAACTTTATAAATGATTTTAAATTG-ACTT-TTTTTCATTTTAGATTAAAACAGATCATAAT
* * *
11830438 TTGATG-CTTGCATTGGGAAACGTGAAACGAAAGCCATCCATT
129 TTGATGTTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATT
* * * * * * *
11830480 GTCAAGAATAGTCCATTTATAGTGACCCATGCCTTTGAAAGCCTTGTTGCTCGCTTCAAGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTAGCTTTAAGTGGTT
* * *
11830545 TTCTAACTTTATAAATGATTTTAAATTGAGTTTTTTTCATTTTAGGTTAAAACAGATCATAATTT
66 TTATAACTTTATAAATGATTTTAAATTGACTTTTTTTCATTTTAGATTAAAACAGATCATAATTT
* * * *
11830610 GATGTTTTGCATTAGGAAATGTGATGC-AATAGCCATCGATC
131 GATGTTTTGCATTGGGAAATGTGAAGCGAA-AGCCATCCATT
* * * * *
11830651 GACGAGAAAAGTCCATTTATACTCACTCATGCCTTT-ACAAGCCTCGTTACTTGCTTTAAGTTGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTTGTTACTAGCTTTAAGTGGT
* * *
11830715 TTTATAACTTTATAAATTG-TTTTCAATTGAATTTTTTTCATTTTCGATTAAAACAGATCATAAT
65 TTTATAACTTTATAAA-TGATTTTAAATTGACTTTTTTTCATTTTAGATTAAAACAGATCATAAT
* * *
11830779 TGGATGTTTT-CATTGGAAAATGTGAAGCAAAAGCCATCCATT
129 TTGATGTTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATT
* * * * * *
11830821 GACAAGAAAAGTCTATTTATAGTTTA-TCGTGCCTTTGAAAGCCTTATTACTTGTTTTAAGTGGT
1 GACAAGAAAAGTCCATTTATAG-TCACTCATGCCTTTGAAAGCCTTGTTACTAGCTTTAAGTGGT
* * * *
11830885 TTTATAACTCTATAAATGATTTTAAACTG-TTTCTTTTTCAATTTT-CATTAAAA-AGGATCATA
65 TTTATAACTTTATAAATGATTTTAAATTGACTT-TTTTTC-ATTTTAGATTAAAACA-GATCATA
* * * * *
11830947 ATTTGATG-CTTGCTTTGGAAAACGTGAAGCAAAAGCCATCCATT
127 ATTTGATGTTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATT
* *
11830991 GACTACAAAAGTCCA
1 GACAAGAAAAGTCCA
11831006 AAGGATCATC
Statistics
Matches: 586, Mismatches: 92, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
168 1 0.00
169 79 0.13
170 214 0.37
171 212 0.36
172 80 0.14
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (171 bp):
GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTAGCTTTAAGTGGTT
TTATAACTTTATAAATGATTTTAAATTGACTTTTTTTCATTTTAGATTAAAACAGATCATAATTT
GATGTTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATT
Found at i:11830814 original size:341 final size:339
Alignment explanation
Indices: 11830139--11830989 Score: 922
Period size: 341 Copynumber: 2.5 Consensus size: 339
11830129 ATGATTTTAA
* * * *
11830139 GACAAGAAAAGTCCATTTAAAGTCATTCATGCCTTCGAAAGCCTAGTTACTCAGTTTAAATGGTT
1 GACAAGAAAAGTCCATTTATAGTCA-TCATGCCTTTGAAAGCCTTGTTACTC-GTTTAAGTGGTT
* * * * * * *
11830204 TTGTAA-TCTTATAAATGATTTTAAGTTGACTTTTTTTCATTTTTGGTTCAAACAAATTACAA-T
64 TTATAACT-TTATAAATGATTTTAAATTGACTTTTTTTCATTTTAGGTTAAAACAGATCATAATT
* * * * * *
11830267 AGAATGTTTTTCTTGGGAAAGGTGAAGCGAAAGCTATCCATTGAGAAGAAAGTCCATTTATAGTC
128 TG-ATGTTTTGCTTAGGAAAGGTGAAGCGAAAGCCATCCATCGAGAAGAAAGTCCATTTATACTC
* *
11830332 ACTCATGGCTTTGAAAGCCTTGTTACTAACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAC
192 ACTCATGCCTTTGAAAGCCTCGTTACTAACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAC
* * * *
11830397 ATTGAACTTGTTTTTCATTTTTCATTAAAACATATCATAGTTTGATGCTTGCATTGGGAAACGTG
257 ATTGAACTTGTTTTTCATTTTTCATTAAAACAGATCATAATTGGATGCTTGCATTGGAAAACGTG
*
11830462 AAACGAAAGCCATCCATT
322 AAACAAAAGCCATCCATT
* * * * * *
11830480 GTCAAGAATAGTCCATTTATAGTGACCCATGCCTTTGAAAGCCTTGTTGCTCGCTTCAAGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCA-TCATGCCTTTGAAAGCCTTGTTACTCG-TTTAAGTGGTT
* *
11830545 TTCTAACTTTATAAATGATTTTAAATTGAGTTTTTTTCATTTTAGGTTAAAACAGATCATAATTT
64 TTATAACTTTATAAATGATTTTAAATTGACTTTTTTTCATTTTAGGTTAAAACAGATCATAATTT
* * *
11830610 GATGTTTTGCATTAGGAAATGTGATGC-AATAGCCATCGATCGACG-AGAAAAGTCCATTTATAC
129 GATGTTTTGC-TTAGGAAAGGTGAAGCGAA-AGCCATCCATCGA-GAAG-AAAGTCCATTTATAC
** *
11830673 TCACTCATGCCTTT-ACAAGCCTCGTTACTTGCTTTAAGTTGTTTTATAACTTTATAAATTG-TT
190 TCACTCATGCCTTTGA-AAGCCTCGTTACTAACTTTAAGTGGTTTTATAACTTTATAAA-TGATT
* *
11830736 TT-CAATTGAA-TT-TTTTTCA-TTTTCGATTAAAACAGATCATAATTGGATGTTTTCATTGGAA
253 TTAC-ATTGAACTTGTTTTTCATTTTTC-ATTAAAACAGATCATAATTGGATGCTTGCATTGGAA
* *
11830797 AATGTGAAGCAAAAGCCATCCATT
316 AACGTGAAACAAAAGCCATCCATT
* * * * *
11830821 GACAAGAAAAGTCTATTTATAGTTTATCGTGCCTTTGAAAGCCTTATTACTTGTTTTAAGTGGTT
1 GACAAGAAAAGTCCATTTATAG-TCATCATGCCTTTGAAAGCCTTGTTACTCG-TTTAAGTGGTT
* * *
11830886 TTATAACTCTATAAATGATTTTAAACTG-TTTCTTTTTCAATTTTCA--TTAAAA-AGGATCATA
64 TTATAACTTTATAAATGATTTTAAATTGACTT-TTTTTC-ATTTT-AGGTTAAAACA-GATCATA
* * * *
11830947 ATTTGATG-CTTGCTTTGGAAAACGTGAAGCAAAAGCCATCCAT
125 ATTTGATGTTTTGCTTAGG-AAAGGTGAAGCGAAAGCCATCCAT
11830990 TGACTACAAA
Statistics
Matches: 430, Mismatches: 62, Indels: 37
0.81 0.12 0.07
Matches are distributed among these distances:
339 4 0.01
340 31 0.07
341 277 0.64
342 39 0.09
343 77 0.18
344 2 0.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (339 bp):
GACAAGAAAAGTCCATTTATAGTCATCATGCCTTTGAAAGCCTTGTTACTCGTTTAAGTGGTTTT
ATAACTTTATAAATGATTTTAAATTGACTTTTTTTCATTTTAGGTTAAAACAGATCATAATTTGA
TGTTTTGCTTAGGAAAGGTGAAGCGAAAGCCATCCATCGAGAAGAAAGTCCATTTATACTCACTC
ATGCCTTTGAAAGCCTCGTTACTAACTTTAAGTGGTTTTATAACTTTATAAATGATTTTACATTG
AACTTGTTTTTCATTTTTCATTAAAACAGATCATAATTGGATGCTTGCATTGGAAAACGTGAAAC
AAAAGCCATCCATT
Found at i:11832656 original size:13 final size:13
Alignment explanation
Indices: 11832632--11832669 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
11832622 GATTCCACTC
*
11832632 GAGAGGAAGAAAA
1 GAGAAGAAGAAAA
11832645 -AGAAGAAAGAAAA
1 GAGAAG-AAGAAAA
11832658 GAGAAGAAGAAA
1 GAGAAGAAGAAA
11832670 GGAAAGGCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 4 0.18
13 13 0.59
14 5 0.23
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
GAGAAGAAGAAAA
Found at i:11834946 original size:171 final size:169
Alignment explanation
Indices: 11834646--11835936 Score: 1139
Period size: 171 Copynumber: 7.5 Consensus size: 169
11834636 ATGATTTTTA
* * * * * *
11834646 GACAA-AAAATTCTATTTATAGTCACTAATGCCTTCGAAAGCGTTGTTACTCTCTTTAAGTGATT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTT
* * *
11834710 TTATAACTTTACAAATGATTTTAAATTGAATTTTCTTTTTCATTTTTGGTTAAAACATATCATAA
66 TTATAAC-TTATAAATGATTTT-AATTGAA-TTT-TTTTTCATTTTTGGTTAAAATAGATCATAA
* *
11834775 TTTAATGTTTGCATTGAGAAACCTGAAGCGAAAGTCATCCATT
127 TTTGATGTTTGCATTGAGAAACGTGAAGCGAAAGTCATCCATT
* * * * *
11834818 GATAAGAAAAGGCCATTTATAGTCACTCATTCCTTCG-AAGCCTAT-TTACTCACTTTAAATGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGT
* * * *
11834881 TTTATAATCGTATAATTGATTTTAAGTTAAATCTTTTTTTCATTTTTGGTTAAAATAAATCATAA
65 TTTATAA-CTTATAAATGATTTTAA-TTGAAT-TTTTTTTCATTTTTGGTTAAAATAGATCATAA
* * * * * * *
11834946 TTGGATTTTTTTTCCTTGGGAAATGTGAAGCAAAAGTCATCCATT
127 TTTGA--TGTTTGCATTGAGAAACGTGAAGCGAAAGTCATCCATT
* * * * * *
11834991 AACAAGAAATGTCCATTTATAGTCCCTCATGCCTTTGAAAACTTTGTTACTCGCTTTAAGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTT
* * * * ** *
11835056 TTATAACTTTATAATTGATTTTACATTGAATTTATTTTCCACTCTTCATTAAAACAGATCATAAT
66 TTATAAC-TTATAAATGATTTTA-ATTGAATTT-TTTTTCATTTTTGGTTAAAATAGATCATAAT
* * * *
11835121 TTGATATTTGCATT-AGCAAACATGAAGCAAAAGCCATCCATT
128 TTGATGTTTGCATTGAG-AAACGTGAAGCGAAAGTCATCCATT
* * * *
11835163 GTA-AAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGCTACTTGCTTTAAGTAGT
1 G-ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGT
* *
11835227 TTTCTAACTTCATAAATGATTTTGAATTGAATTTTTTTTCATTTGTT-GTTAAAATATATCATAA
65 TTTATAACTT-ATAAATGATTTT-AATTGAATTTTTTTTCATTT-TTGGTTAAAATAGATCATAA
* * * * *
11835291 TTTGATGTTTGCATTTAGAAATGTAAAGCGAAAGTCGTTCATT
127 TTTGATGTTTGCATTGAGAAACGTGAAGCGAAAGTCATCCATT
* * * * * * * * *
11835334 GGCAAGGAAAGTCTATTTATAGTCCCCCATGCCTTCGAAAGCTTTGTCACTTGATTTAAGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTT
* * * * *
11835399 TTATAATTTTACAAATGATTTTAACTTGAA-TTTCTTTCATTTTTGGTTCAAAAACATATCATAA
66 TTATAA-CTTATAAATGATTTTAA-TTGAATTTTTTTTCATTTTTGGTT--AAAATAGATCATAA
* * * * * * *
11835463 TTTCATGTTTGCAATGGGAAATGTGAAGCGAAAGCCATTCACT
127 TTTGATGTTTGCATTGAGAAACGTGAAGCGAAAGTCATCCATT
* * * * * * * *
11835506 AAC-AGAAAAAGACCATTTATGGTCATTCATGCTTTCGAAAGCGTAGTTACTCGCTTTAAATGGT
1 GACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGT
* * * * * ** * *
11835570 TTTATAATCTCATAAATGATTTTAAGTTAAATTGTTTCTAATTTTTGAATAAAATAGATAATAAA
65 TTTATAA-CTTATAAATGATTTTAA-TTGAATTTTTTTTCATTTTTGGTTAAAATAGATCATAAT
* * ** *
11835635 TGGATGTTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATT
128 TTGATGTTTGCATTGAGAAACGTGAAGCGAAAGTCATCCATT
* ** * * ** *
11835677 AACAAGAAAAGTTTATTTATAGTCCCTCATGCCTTCGAAAGGCTTAATAC-CTGCTTTATGTGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC-GCTTTAAGTGGT
* * *
11835741 TTTATAACTTTATAAATTATTTTGAATTGAATTTTTTTTCATTTTTGGTTAGAACT-GATCATTA
65 TTTATAAC-TTATAAATGATTTT-AATTGAATTTTTTTTCATTTTTGGTTA-AAATAGATCATAA
*
11835805 TTTGATGTTTGCATTGCA-AAACGTGAAGCAAAAGTCATCCATT
127 TTTGATGTTTGCATTG-AGAAACGTGAAGCGAAAGTCATCCATT
** * * * * * *
11835848 GTTAAGAAAAGTCTATTTATTGTCACTGATACCCTCGAAAGCCTTGTTACAT-GCTTTAAATGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC-TCGCTTTAAGTGGT
*
11835912 TTTATATTCTTATAAATGATTTTAA
65 TTTATA-ACTTATAAATGATTTTAA
11835937 GACAAGAAAA
Statistics
Matches: 892, Mismatches: 192, Indels: 72
0.77 0.17 0.06
Matches are distributed among these distances:
169 2 0.00
170 20 0.02
171 399 0.45
172 290 0.33
173 107 0.12
174 73 0.08
175 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (169 bp):
GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTT
TTATAACTTATAAATGATTTTAATTGAATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTG
ATGTTTGCATTGAGAAACGTGAAGCGAAAGTCATCCATT
Found at i:11835499 original size:343 final size:340
Alignment explanation
Indices: 11834656--11835937 Score: 1307
Period size: 343 Copynumber: 3.7 Consensus size: 340
11834646 GACAAAAAAT
* * * *
11834656 TCTATTTATAGTCACTAATGCCTTCGAAAGCGTTGTTACTCT-CTTTAAGTGATTTTATAACTTT
1 TCTATTTATAGTCCCTCATGCCTTCGAAAGCTTTGTTACT-TGCTTTAAGTGGTTTTATAACTTT
* *
11834720 ACAAATGATTTTAAATTGAATTTTCTTTTTCATTTTTGGTTAAAACATATCATAATTTAATGTTT
65 ACAAATGATTTTAACTTGAATTTTC--TTTCATTTTTGGTTAAAACATATCATAATTTGATGTTT
* * * * * * *
11834785 GCATTGAGAAACCTGAAGCGAAAGTCATCCATTG-ATAAGAAAAGGCCATTTATAGTCACTCATT
128 GCATTGGGAAACGTGAAGCAAAAGCCATCCATTGTA-AAAAAAAGTCCATTTATAGTCACTCATG
* * *
11834849 CCTTCG-AAGCCTAT-TTACTCACTTTAAATGGTTTTATAATCGTATAATTGATTTTAAGTTAAA
192 CCTTCGAAAGCCT-TGTTACTCGCTTTAAATGGTTTTATAA-CTTATAAATGATTTTAAGTTAAA
* * **
11834912 TCTTTTTTTCATTTTTGGTTAAAATAAATCATAATTGGATTTTTTTTCCTTGGGAAATGTGAAGC
255 T-TTTTTTTCATTTTT-GTTAAAATAAATCATAATTGGA--TGTTTGCCTTAAGAAATGTGAAGC
*
11834977 AAAAGTCATCCATTAACAA-GAAATG
316 GAAAGTCATCCATTAACAAGGAAA-G
* * * *
11835002 TCCATTTATAGTCCCTCATGCCTTTGAAAACTTTGTTACTCGCTTTAAGTGGTTTTATAACTTTA
1 TCTATTTATAGTCCCTCATGCCTTCGAAAGCTTTGTTACTTGCTTTAAGTGGTTTTATAACTTTA
* * * * ** * *
11835067 TAATTGATTTT-ACATTGAATTTAT-TTTCCACTCTTCATTAAAACAGATCATAATTTGATATTT
66 CAAATGATTTTAAC-TTGAATTT-TCTTT-CATTTTTGGTTAAAACATATCATAATTTGATGTTT
* * *
11835130 GCATTAGCAAACATGAAGCAAAAGCCATCCATTGTAAAAAAAAGTCCATTTATAGTCACTCATGC
128 GCATTGGGAAACGTGAAGCAAAAGCCATCCATTGTAAAAAAAAGTCCATTTATAGTCACTCATGC
* * * * * *
11835195 CTTCGAAAGCCTTGCTACTTGCTTTAAGTAGTTTTCTAACTTCATAAATGATTTTGAA-TTGAAT
193 CTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAACTT-ATAAATGATTTT-AAGTTAAAT
* * * * *
11835259 TTTTTTTCATTTGTTGTTAAAATATATCATAATTTGATGTTTGCATTTAGAAATGTAAAGCGAAA
256 TTTTTTTCATTT-TTGTTAAAATAAATCATAATTGGATGTTTGCCTTAAGAAATGTGAAGCGAAA
* * **
11835324 GTCGTTCATTGGCAAGGAAAG
320 GTCATCCATTAACAAGGAAAG
* * * *
11835345 TCTATTTATAGTCCCCCATGCCTTCGAAAGCTTTGTCACTTGATTTAAGTGGTTTTATAATTTTA
1 TCTATTTATAGTCCCTCATGCCTTCGAAAGCTTTGTTACTTGCTTTAAGTGGTTTTATAACTTTA
*
11835410 CAAATGATTTTAACTTGAA-TTTCTTTCATTTTTGGTTCAAAAACATATCATAATTTCATGTTTG
66 CAAATGATTTTAACTTGAATTTTCTTTCATTTTTGGTT--AAAACATATCATAATTTGATGTTTG
* * * * * * * *
11835474 CAATGGGAAATGTGAAGCGAAAGCCATTCA--CTAACAGAAAAAGACCATTTATGGTCATTCATG
129 CATTGGGAAACGTGAAGCAAAAGCCATCCATTGTAA-A-AAAAAGTCCATTTATAGTCACTCATG
* * * *
11835537 CTTTCGAAAGCGTAGTTACTCGCTTTAAATGGTTTTATAATCTCATAAATGATTTTAAGTTAAAT
192 CCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAA-CTTATAAATGATTTTAAGTTAAAT
* * * * * * * * *
11835602 TGTTTCTAATTTTTGAATAAAATAGATAATAAATGGATGTTTGCCTCAAGAAACGTGAAGCGAAA
256 TTTTTTTCATTTTTG-TTAAAATAAATCATAATTGGATGTTTGCCTTAAGAAATGTGAAGCGAAA
* *
11835667 GCCATCCATTAACAAGAAAAG
320 GTCATCCATTAACAAGGAAAG
* ** * *
11835688 TTTATTTATAGTCCCTCATGCCTTCGAAAGGC-TTAATACCTGCTTTATGTGGTTTTATAACTTT
1 TCTATTTATAGTCCCTCATGCCTTCGAAA-GCTTTGTTACTTGCTTTAAGTGGTTTTATAACTTT
* * * * *
11835752 ATAAATTATTTTGAA-TTGAATTTTTTTTCATTTTTGGTTAGAAC-TGATCATTATTTGATGTTT
65 ACAAATGATTTT-AACTTGAATTTTCTTTCATTTTTGGTTAAAACAT-ATCATAATTTGATGTTT
** * * * * * * *
11835815 GCATTGCAAAACGTGAAGCAAAAGTCATCCATTGTTAAGAAAAGTCTATTTATTGTCACTGATAC
128 GCATTGGGAAACGTGAAGCAAAAGCCATCCATTGTAAAAAAAAGTCCATTTATAGTCACTCATGC
* *
11835880 CCTCGAAAGCCTTGTTACAT-GCTTTAAATGGTTTTATATTCTTATAAATGATTTTAAG
193 CTTCGAAAGCCTTGTTAC-TCGCTTTAAATGGTTTTATA-ACTTATAAATGATTTTAAG
11835938 ACAAGAAAAG
Statistics
Matches: 765, Mismatches: 143, Indels: 60
0.79 0.15 0.06
Matches are distributed among these distances:
341 12 0.02
342 123 0.16
343 353 0.46
344 34 0.04
345 123 0.16
346 117 0.15
347 3 0.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (340 bp):
TCTATTTATAGTCCCTCATGCCTTCGAAAGCTTTGTTACTTGCTTTAAGTGGTTTTATAACTTTA
CAAATGATTTTAACTTGAATTTTCTTTCATTTTTGGTTAAAACATATCATAATTTGATGTTTGCA
TTGGGAAACGTGAAGCAAAAGCCATCCATTGTAAAAAAAAGTCCATTTATAGTCACTCATGCCTT
CGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAACTTATAAATGATTTTAAGTTAAATTTTTT
TTCATTTTTGTTAAAATAAATCATAATTGGATGTTTGCCTTAAGAAATGTGAAGCGAAAGTCATC
CATTAACAAGGAAAG
Found at i:11836165 original size:259 final size:260
Alignment explanation
Indices: 11835678--11836196 Score: 613
Period size: 259 Copynumber: 2.0 Consensus size: 260
11835668 CCATCCATTA
* * * *
11835678 ACAAGAAAAGTTTATTTATAGTCCCTCATGCCTTCGAAAGGCTTAATACCTGCTTTATGTGGTTT
1 ACAAGAAAAGTTCATTTATAGTCCCTCATGACTTCGAAAGGCTTAATACCTGCTTTAAGAGGTTT
* * * *
11835743 TATAACTTTATAAATTATTTTGAATTGAATTTTTTTTCATTTTTGGTTAGAACTGATCATTATTT
66 TATAACTTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAGAAATGATCATTATTT
* * ** *
11835808 GATGTTTGCATTGCAAAACGTGAAGCAAAAGTCATCCATTGTTAAGAAAAGTCTATTTATTGTCA
131 GATGTTTGCATTGCAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCA
** ** * * * *
11835873 CTGATACCCTCGAAAGCCTTGTTACATGCTTTAAATGGTTTTATATTCTTATAAATGATTTTAAG
196 CCCATACCCTCGAAAGCCCAGTTACATGCTTTAAATGGATTTATAATCTCAAAAATGATTTTAAG
* * * *
11835938 ACAAGAAAAGTTCATTTGTAG-CCACTTATGACTTTGAAA-GCTTTATTA-CTCGCTTTAAGAGG
1 ACAAGAAAAGTTCATTTATAGTCC-CTCATGACTTCGAAAGGC-TTAATACCT-GCTTTAAGAGG
*
11836000 TTTTATAACTTTATAAATGATTTTTAAATTG-ATTTTTTTT-ATTTTTATTTA-AAATAGATCAT
63 TTTTATAACTTTATAAATGA-TTTTAAATTGAATTTTTTTTCATTTTTAGTTAGAAAT-GATCAT
* **
11836062 TATTTGATGTTTGTATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCT-TTTA
126 TATTTGATGTTTGCATTGCAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGT-CTATTTA
* * ** *
11836126 TAGTCACCCATGCCGTTTAAAGCCCAGTTAC-TAGCTTTAAATTGATTTATAATCTCAAAAATGA
190 TAGTCACCCATACCCTCGAAAGCCCAGTTACAT-GCTTTAAATGGATTTATAATCTCAAAAATGA
11836190 TTTTAAG
254 TTTTAAG
11836197 CTGAATTTTT
Statistics
Matches: 218, Mismatches: 34, Indels: 15
0.82 0.13 0.06
Matches are distributed among these distances:
258 4 0.02
259 130 0.60
260 75 0.34
261 9 0.04
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.40
Consensus pattern (260 bp):
ACAAGAAAAGTTCATTTATAGTCCCTCATGACTTCGAAAGGCTTAATACCTGCTTTAAGAGGTTT
TATAACTTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAGAAATGATCATTATTT
GATGTTTGCATTGCAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCA
CCCATACCCTCGAAAGCCCAGTTACATGCTTTAAATGGATTTATAATCTCAAAAATGATTTTAAG
Found at i:11836243 original size:170 final size:171
Alignment explanation
Indices: 11835937--11837003 Score: 892
Period size: 170 Copynumber: 6.3 Consensus size: 171
11835927 ATGATTTTAA
* * * * * * ** *
11835937 GACAAGAAAAGTTCATTTGTAGCCACTTATGACTTTGAAAGCTTTA-TTACTCGCTTTAAGA-GG
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGC-CCAGTTACTAGCTTTAA-ATGG
* * * ***
11836000 TTTTATAA-CTTTATAAATGATTTTTAAATTG-ATT-TTTTTTATTTTTATTTAAAAT-AGATCA
64 TTTTATAATC-TCATAAATGA-TTTTAAGTTGAATTGTTTTTCATTTTTGGAT-AAATCAGATCA
* * * *
11836061 TTATTTGATGTTTGTATTGGGAAACATGAAGCAAAAGCCATCCATT
126 TAATTAGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATT
* * * *
11836107 GACAAGAAAAGTCCTTTTATAGTCACCCATGCCGTTT-AAAGCCCAGTTACTAGCTTTAAATTGA
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTTAAAAGCCCAGTTACTAGCTTTAAATGGT
* * * * *
11836171 TTTATAATCTCAAAAATGATTTTAAGCTGAATT-TTTTGCATTTTTGG-TCAAAACATATCATAA
65 TTTATAATCTCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGGAT-AAATCAGATCATAA
* ** *
11836234 TTGGATGTTT-C-TGTCTAGAAACGTAAAGCGAAAA-CCATCCATT
129 TTAGATGTTTGCAT-T-GGGAAACGTGAAGC-AAAAGCCATCCATT
* * ** ** * *
11836277 GATAAGAATAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCCCAGTTACTAGCTTTAAATGGTT
* * * * * *
11836342 TTATAA-CTTTATAAATGATTTTAAATTGAATT-TTTTTTATTTTT-CATTGAAGCAGATCATAA
66 TTATAATC-TCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGGA-TAAATCAGATCATAA
* ** * * *
11836404 TTTGATGCCTGCAATGGGAAACGAGAAGCAAAAGTCATCCATT
129 TTAGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATT
* * * * *
11836447 GACAAGGAAAGTGCATTTGTAGTGACTCATGCCTTTAAAAGCCCAGTTACTAGCTTAAAATGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCCCAGTTACTAGCTTTAAATGGTT
* * *
11836512 TTATAATTTCATAAATGATTTTAAGTTGTATTGTTTTTCATTTTTGGATAAATCAGA-CAATAAA
66 TTATAATCTCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGGATAAATCAGATC-ATAAT
* * *
11836576 TAGATGTTTGCCTTGGAAAAGGTGAAGCAAAAGCCATCCATT
130 TAGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATT
* * * *
11836618 GACAAGAAAAGTCCATTTGTAGTGACTCATGCCTTTGAAAGCCCAGTTACTAGCTTGAAATGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCCCAGTTACTAGCTTTAAATGGTT
* * * *
11836683 TTATAAAT-TCATAAATGATTTTAAGTTGTATTGTTTTTCATTTTTGGATAAATCATATAATAAA
66 TTAT-AATCTCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGGATAAATCAGATCATAAT
* * *
11836747 TAGATGTTTGCCTTGGGAAACGTGAAACAAAAGCCATTCATT
130 TAGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATT
* * * * ** * ** * * **
11836789 GACAAGAAAAGTTCATTTATAGTCTCTCATGCCTTCAAAAGGCTTGATACTCTCCTCATGTGGTT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCCCAGTTACTAGCTTTAAATGGTT
* * * * * * * * *
11836854 TTCTAATTTTATAAATGATTTTAAATAGAATTTGTTTTTAATTTTTGGTTAGAAT-TGATCATTA
66 TTATAATCTCATAAATGATTTTAAGTTGAA-TTGTTTTTCATTTTTGGATA-AATCAGATCATAA
* * * *** * *
11836918 TTTGATGTCTACATTACAAAACATGAAGCAAAAGCCTTCCATT
129 TTAGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATT
* * * *
11836961 GTCAAGAAAAGTCCATTTATAGTCATTCATGCCCTCAAAAGCC
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCC
11837004 TTGTTACACA
Statistics
Matches: 726, Mismatches: 146, Indels: 48
0.79 0.16 0.05
Matches are distributed among these distances:
168 1 0.00
169 22 0.03
170 313 0.43
171 292 0.40
172 95 0.13
173 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (171 bp):
GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCCCAGTTACTAGCTTTAAATGGTT
TTATAATCTCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGGATAAATCAGATCATAATT
AGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATT
Found at i:11837289 original size:774 final size:772
Alignment explanation
Indices: 11836280--11837780 Score: 1876
Period size: 774 Copynumber: 1.9 Consensus size: 772
11836270 ATCCATTGAT
*
11836280 AAGAATAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTA
* * * * *
11836345 TAACTTTATAAATGATTTTAAATTGAATTTTTTTTATTTTTCATTGAAGCAGATCATAATTTGAT
66 TAACTTTATAAATAATTTTAAATTAAATTTTTTTTATTTTTCATTAAAACAAATCATAATTTGAT
* * *
11836410 GCCTGCAATGGGAAACGAGAAGCAAAAGTCATCCATTGACAAGGAAAGTGCATTTGTAGTGACTC
131 GCCTGCAATGGGAAACGAGAAGCAAAAGTCATCCATTGACAAGAAAAGTGCATTTATAGTCACTC
* * *
11836475 ATGCCTTTAAAAGCCCAGTTACTAGCTTAAAATGGTTTTATAATTTCATAAATGATTTTAAGTTG
196 ATGCCATTAAAAGACCAGTTACTAGCTTAAAATGGTTTTATAATCTCATAAATGATTTTAAGTTG
* *
11836540 TATTGTTTTTCATTTTTGGATAAATCAGA-CAATAAATAGATGTTTGCCTTG-GAAA-AGGTGAA
261 AATTGTTTTTCATTTTTGGATAAAACAGATC-ATAAATAGATGTTTGCCTTGAGAAACA--TGAA
* * ** *
11836602 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTGTAGTGACTCATGCCTTTGAAAGCCCAGTTA
323 ACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCCCAGATA
* ** * * *
11836667 CTAGCTTGAAATGGTTTTATAAATTCATAAATGATTTTAAGTTGTATTGTTTTTCATTTTTGGA-
388 CTAGCTTGAAATGGTTTGATAAATTCATAAATGATTTTAAAATGAATT-TTTTTCATTTCT-CAT
** * * ** * *
11836731 TAAATCATATAATAAATAGATGTTTGCCTTGGGAAACGTGAAACAAAAGCCATTCATTGACAAGA
451 TAAAAAAGATAATAAATAGATGTTTGCATCAGGAAACATGAAACAAAAGCCATCCATTGACAAGA
* ** * *
11836796 AAAGTTCATTTATAGTCTCTCATG-CCTTCAAAAGGC-TTGATACTCTCCTCATGTGGTTTTCTA
516 AAAGTTCATTTATAATCTCTCATGACCTTCAAAA--CTTTGATACTCTCCTCAAATGGCTTTATA
* ** * **
11836859 ATTTTATAAATGATTTTAAATAGAATTTGT-TTTTAATTTTTGGTTAGAATTGATCATTATTTGA
579 ACTTTATAAATGATTTTAAATAGAATTTGTATTTT-ATTTTTCATTAAAACAGATCATTATTTGA
* * *
11836923 TGTCTACATTACAAAACATGAAGCAAAAGCCTTCCATTGTCAAGAAAAGTCCATTTATAGTCATT
643 TGTCTACATTACAAAACATGAAGC-AAAGCCATCCATTATCAAGAAAAGTCCATTTATAGTCACT
* *
11836988 CATGCCCTCAAAAGCCTTGTTACACACTTTAAATAGTTTTTTTATTCTTAGAAATGATTTTAAGG
707 CATACCCTCAAAAGCCATGTTACACACTTTAAATAGTTTTTTTATTCTTAGAAATGATTTTAAGG
11837053 C
772 C
* *
11837054 AAGAAAAGTCCATTTGTAGTCAC-CTAT-CCTTC-AGAAGCCTTGTTCCTTGCTTTAAGTGGTTT
1 AAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGA-AAGCCTTGTTACTTGCTTTAAGTGGTTT
** *
11837116 TATAACTTTATAAATAATTTTAAATTAAATTTTTTTTTATTTTTGGTTAAAACAAATCATACTTT
64 TATAACTTTATAAATAATTTTAAATTAAA-TTTTTTTTATTTTTCATTAAAACAAATCATAATTT
** * * *
11837181 GATGTTTGCATTGGGAAAC-ATGAAGCAAAAG-CTATCCATTGAGAAGAAAAGTTCATTTATAGT
128 GATGCCTGCAATGGGAAACGA-GAAGCAAAAGTC-ATCCATTGACAAGAAAAGTGCATTTATAGT
* * * *
11837244 CATTCATGCCATTGAAAGACTAGTTACTTA-CTTTAAATGGTTTTATAATCTCATAAATGATTTT
191 CACTCATGCCATTAAAAGACCAGTTAC-TAGCTTAAAATGGTTTTATAATCTCATAAATGATTTT
* *
11837308 AAGTTGAATTGTTTTTCATTTTTGGATAAAACAGATCATAAATGGATGTTTGTCTTGAGAAACAT
255 AAGTTGAATTGTTTTTCATTTTTGGATAAAACAGATCATAAATAGATGTTTGCCTTGAGAAACAT
* * **
11837373 GAAACGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGGCTTG
320 GAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCCCAG
* * * * * *
11837438 ATACTCGCTTTAAGTGGTTTGCTAACTTTATAAATGATTTTAAAATGAATTTTTTTCATTTCTCA
385 ATACTAGCTTGAAATGGTTTGATAAATTCATAAATGATTTTAAAATGAATTTTTTTCATTTCTCA
* * * * * **
11837503 TTAAAAAAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCGAAAGTGATCCATTGACAAG
450 TTAAAAAAGATAATAAATAGATGTTTGCATCAGGAAACATGAAACAAAAGCCATCCATTGACAAG
* * * * * *
11837568 AAAAGTTCATTTATAATCTCTTATGACTTTGAAAACTTTGTTACTCTCTTTAAATGGCTTTATAA
515 AAAAGTTCATTTATAATCTCTCATGACCTTCAAAACTTTGATACTCTCCTCAAATGGCTTTATAA
* *
11837633 CTTTATAAATGATTTTACATTGAATTTGTATTTTATTTTTCATTAAAACAGATCATTATTTGATG
580 CTTTATAAATGATTTTAAATAGAATTTGTATTTTATTTTTCATTAAAACAGATCATTATTTGATG
* * * *** **
11837698 TTTGCTTTGGGAAATGTGAAGCAAAGCCATCCATTATCAAGAAAAGTCCATTTATAGTCACTCAT
645 TCTACATTACAAAACATGAAGCAAAGCCATCCATTATCAAGAAAAGTCCATTTATAGTCACTCAT
* *
11837763 ACCTTCCAAAGCCATGTT
710 ACCCTCAAAAGCCATGTT
11837781 GCTTGCTTTA
Statistics
Matches: 614, Mismatches: 100, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
772 57 0.09
773 232 0.38
774 317 0.52
775 7 0.01
776 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (772 bp):
AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTA
TAACTTTATAAATAATTTTAAATTAAATTTTTTTTATTTTTCATTAAAACAAATCATAATTTGAT
GCCTGCAATGGGAAACGAGAAGCAAAAGTCATCCATTGACAAGAAAAGTGCATTTATAGTCACTC
ATGCCATTAAAAGACCAGTTACTAGCTTAAAATGGTTTTATAATCTCATAAATGATTTTAAGTTG
AATTGTTTTTCATTTTTGGATAAAACAGATCATAAATAGATGTTTGCCTTGAGAAACATGAAACA
AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCCCAGATACTA
GCTTGAAATGGTTTGATAAATTCATAAATGATTTTAAAATGAATTTTTTTCATTTCTCATTAAAA
AAGATAATAAATAGATGTTTGCATCAGGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGT
TCATTTATAATCTCTCATGACCTTCAAAACTTTGATACTCTCCTCAAATGGCTTTATAACTTTAT
AAATGATTTTAAATAGAATTTGTATTTTATTTTTCATTAAAACAGATCATTATTTGATGTCTACA
TTACAAAACATGAAGCAAAGCCATCCATTATCAAGAAAAGTCCATTTATAGTCACTCATACCCTC
AAAAGCCATGTTACACACTTTAAATAGTTTTTTTATTCTTAGAAATGATTTTAAGGC
Found at i:11837401 original size:171 final size:169
Alignment explanation
Indices: 11837053--11837989 Score: 828
Period size: 171 Copynumber: 5.5 Consensus size: 169
11837043 GATTTTAAGG
* * * * * *
11837053 CAAGAAAAGTCCATTTGTAGTCA-CCTAT-CCTTCAGAAGCCTTGTTCCTTGCTTTAAGTGGTTT
1 CAAGAAAAGTCCATTTATAGTCATTC-ATGCCTTGA-AAGACTTGTTACTTGCTTTAAATGGTTT
* * * * * *
11837116 TATAACTTTATAAATAATTTTAAATTAAATTTTTTTTTATTTTTGGTTAAAACAAATCATACTTT
64 TATAACTTTATAAATGATTTTAAATTGAA-TTTTTTTCATTTTTGGATAAAACAGATCATAATTT
* * *
11837181 GATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCCATTGA
128 GATGTTTGCATTGAGAAACATGAAGCGAAAGCCATCCATTGA
* * * *
11837223 GAAGAAAAGTTCATTTATAGTCATTCATGCCATTGAAAGACTAGTTACTTACTTTAAATGGTTTT
1 CAAGAAAAGTCCATTTATAGTCATTCATGCC-TTGAAAGACTTGTTACTTGCTTTAAATGGTTTT
* * * *
11837288 ATAA-TCTCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGGATAAAACAGATCATAAATG
65 ATAACT-TTATAAATGATTTTAAATTGAATT-TTTTTCATTTTTGGATAAAACAGATCATAATTT
*
11837352 GATGTTTGTC-TTGAGAAACATGAAACGAAAGCCATCCATTGA
128 GATGTTTG-CATTGAGAAACATGAAGCGAAAGCCATCCATTGA
* * * * * * *
11837394 CAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGGCTTGATACTCGCTTTAAGTGGTTTG
1 CAAGAAAAGTCCATTTATAGTCATTCATGCC-TTGAAAGACTTGTTACTTGCTTTAAATGGTTTT
* * * * *
11837459 CTAACTTTATAAATGATTTTAAAATGAATTTTTTTCATTTCT-CATTAAAAAAGATCATAATTTG
65 ATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGA-TAAAACAGATCATAATTTG
* **
11837523 ATGTTTGCA-TCAGGAAACATGAAGCGAAAGTGATCCATTGA
129 ATGTTTGCATTGA-GAAACATGAAGCGAAAGCCATCCATTGA
* * * * *
11837564 CAAGAAAAGTTCATTTATAATC-TCTTATGACTTTGAAA-ACTTTGTTACTCT-CTTTAAATGGC
1 CAAGAAAAGTCCATTTATAGTCAT-TCATG-CCTTGAAAGAC-TTGTTACT-TGCTTTAAATGGT
* * * *
11837626 TTTATAACTTTATAAATGATTTTACATTGAATTTGTATTTTATTTTT-CATTAAAACAGATCATT
62 TTTATAACTTTATAAATGATTTTAAATTGAATTT-T-TTTCATTTTTGGA-TAAAACAGATCATA
* * **
11837690 ATTTGATGTTTGCTTTGGGAAATGTGAAGC-AAAGCCATCCATT-A
124 ATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCATCCATTGA
* * * * * * * *
11837734 TCAAGAAAAGTCCATTTATAGTCACTCATACCTTCCAAAGCCATGTTGCTTGCTTTAAGTGGTTC
1 -CAAGAAAAGTCCATTTATAGTCATTCATGCCTT-GAAAGACTTGTTACTTGCTTTAAATGGTTT
* * * ** *
11837799 TCTAACTTCATAAATGATTTTAAATTGAGTTTTTTTTTTTTTTAGGTTAAAACAGATCATAATTT
64 TATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTT-GGATAAAACAGATCATAATTT
* ** * *
11837864 GATATTTGCATCAAGAAACGA-GATGC-AATATCCATCCATTGA
128 GATGTTTGCATTGAGAAAC-ATGAAGCGAA-AGCCATCCATTGA
* * * *
11837906 TAAGAAAAGTCCATTTACAGTCACTT-ATGCCTTCGAAA-TCTTTGTTACATGCTTTAAATGGTT
1 CAAGAAAAGTCCATTTATAGTCA-TTCATGCCTT-GAAAGAC-TTGTTACTTGCTTTAAATGGTT
* *
11837969 ATAT-ATTCTTATAAATGATTT
63 TTATAACT-TTATAAATGATTT
11837990 AATGACATGA
Statistics
Matches: 618, Mismatches: 119, Indels: 59
0.78 0.15 0.07
Matches are distributed among these distances:
169 14 0.02
170 204 0.33
171 345 0.56
172 54 0.09
173 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (169 bp):
CAAGAAAAGTCCATTTATAGTCATTCATGCCTTGAAAGACTTGTTACTTGCTTTAAATGGTTTTA
TAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGATAAAACAGATCATAATTTGAT
GTTTGCATTGAGAAACATGAAGCGAAAGCCATCCATTGA
Found at i:11837726 original size:341 final size:335
Alignment explanation
Indices: 11837053--11837989 Score: 959
Period size: 341 Copynumber: 2.7 Consensus size: 335
11837043 GATTTTAAGG
* * * * * *
11837053 CAAGAAAAGTCCATTTGTAGTCAC-C-TATCCTT-CAGAAGCCTTGTTCCTTGCTTTAAGTGGTT
1 CAAGAAAAGTCCATTTATAGCCACTCATA-CCTTCCA-AAGCCATGATACTCGCTTTAAGTGG-T
* * * ** *
11837115 TTATAACTTTATAAATAATTTTAAATTAAATTTTTTTTTATTTTTGGTTAAAACAA-ATCATACT
63 TTCTAACTTTATAAATGATTTTAAATTGAA--TTTTTTTATTTTTCATTAAAA-AAGATCATAAT
** *
11837179 TTGATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCCATTGAGAAGAAAAGTTCATTTATAGT
125 TTGATGTTTGCATCAGGAAACATGAAGC-AAAG-TATCCATTGACAAGAAAAGTTCATTTATAGT
* * * *
11837244 CAT-TCATGCCATTGAAAGAC-TAGTTACTTACTTTAAATGGTTTTATAATCTCATAAATGATTT
188 C-TCTTATGCCTTTGAAA-ACTTTGTTACTT-CTTTAAATGG-TTTATAATCTTATAAATGATTT
*
11837307 TAAGTTGAATTGTTTTTCATTTTTGGATAAAACAGATCATAAATGGATGTTTGTCTTGAGAAACA
249 TAAGTTGAATTGTTTTTCATTTTTGCATAAAACAGATCATAAATGGATGTTTGTCTTGAGAAACA
11837372 TGAAACGAAAGCCATCCATTGA-
314 TGAAACGAAAGCCATCCATT-AT
* ** * *
11837394 CAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGGCTTGATACTCGCTTTAAGTGGTTTG
1 CAAGAAAAGTCCATTTATAGCCACTCATACCTTCCAAAGCCATGATACTCGCTTTAAGTGGTTT-
* *
11837459 CTAACTTTATAAATGATTTTAAAATGAATTTTTTTCATTTCTCATTAAAAAAGATCATAATTTGA
65 CTAACTTTATAAATGATTTTAAATTGAATTTTTTT-ATTTTTCATTAAAAAAGATCATAATTTGA
*
11837524 TGTTTGCATCAGGAAACATGAAGCGAAAGTGATCCATTGACAAGAAAAGTTCATTTATAATCTCT
129 TGTTTGCATCAGGAAACATGAAGC-AAAGT-ATCCATTGACAAGAAAAGTTCATTTATAGTCTCT
*
11837589 TATGACTTTGAAAACTTTGTTACTCTCTTTAAATGGCTTTATAA-CTTTATAAATGATTTTACA-
192 TATGCCTTTGAAAACTTTGTTACT-TCTTTAAATGG-TTTATAATC-TTATAAATGATTTTA-AG
* * * * **
11837652 TTGAATTTGTATTTT-ATTTTT-CATTAAAACAGATCATTATTTGATGTTTG-CTTTGGGAAATG
253 TTGAA-TTGT-TTTTCATTTTTGCA-TAAAACAGATCATAAATGGATGTTTGTC-TTGAGAAACA
*
11837714 TGAAGC-AAAGCCATCCATTAT
314 TGAAACGAAAGCCATCCATTAT
* * * *
11837735 CAAGAAAAGTCCATTTATAGTCACTCATACCTTCCAAAGCCATGTTGCTTGCTTTAAGTGGTTCT
1 CAAGAAAAGTCCATTTATAGCCACTCATACCTTCCAAAGCCATGATACTCGCTTTAAGTGGTT-T
* * * * *
11837800 CTAACTTCATAAATGATTTTAAATTGAGTTTTTTTTTTTTTTAGGTTAAAACAGATCATAATTTG
65 CTAACTTTATAAATGATTTTAAATTGAATTTTTTTATTTTTCA--TTAAAAAAGATCATAATTTG
* * * * * *
11837865 ATATTTGCATCAAGAAACGA-GATGCAATA-TCCATCCATTGATAAGAAAAGTCCATTTACAGTC
128 ATGTTTGCATCAGGAAAC-ATGAAGCAA-AGT--ATCCATTGACAAGAAAAGTTCATTTATAGTC
* * * * *
11837928 ACTTATGCCTTCGAAATCTTTGTTACATGCTTTAAATGGTTATATATTCTTATAAATGATTT
189 TCTTATGCCTTTGAAAACTTTGTTAC-TTCTTTAAATGGTT-TATAATCTTATAAATGATTT
11837990 AATGACATGA
Statistics
Matches: 505, Mismatches: 65, Indels: 51
0.81 0.10 0.08
Matches are distributed among these distances:
340 20 0.04
341 262 0.52
342 214 0.42
343 9 0.02
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (335 bp):
CAAGAAAAGTCCATTTATAGCCACTCATACCTTCCAAAGCCATGATACTCGCTTTAAGTGGTTTC
TAACTTTATAAATGATTTTAAATTGAATTTTTTTATTTTTCATTAAAAAAGATCATAATTTGATG
TTTGCATCAGGAAACATGAAGCAAAGTATCCATTGACAAGAAAAGTTCATTTATAGTCTCTTATG
CCTTTGAAAACTTTGTTACTTCTTTAAATGGTTTATAATCTTATAAATGATTTTAAGTTGAATTG
TTTTTCATTTTTGCATAAAACAGATCATAAATGGATGTTTGTCTTGAGAAACATGAAACGAAAGC
CATCCATTAT
Found at i:11838070 original size:89 final size:89
Alignment explanation
Indices: 11837909--11838078 Score: 229
Period size: 89 Copynumber: 1.9 Consensus size: 89
11837899 CCATTGATAA
* *
11837909 GAAAAGTCCATTTACAGTCACTTATGCCTTCGAAATCTTTGTTACATGCTTTAAATGGTTATATA
1 GAAAAGTCCATTTACAGTCACTCATGCCTTCGAAATCTTTGTTACATGCTTTAAATGATTATATA
*
11837974 TTCTTATAAATGATTTAATGACAT
66 CTCTTATAAATGATTTAATGACAT
* * * *
11837998 GAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTC-TTGTTAC-TCGCTTTAAATGATTGTC
1 GAAAAGTCCATTTACAGTCACTCATGCCTTCGAAA-TCTTTGTTACAT-GCTTTAAATGATTATA
11838061 TAACT-TTATAAATGATTT
64 T-ACTCTTATAAATGATTT
11838079 TAAATTGATT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
88 1 0.01
89 66 0.93
90 4 0.06
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (89 bp):
GAAAAGTCCATTTACAGTCACTCATGCCTTCGAAATCTTTGTTACATGCTTTAAATGATTATATA
CTCTTATAAATGATTTAATGACAT
Found at i:11838215 original size:943 final size:936
Alignment explanation
Indices: 11836106--11838423 Score: 2365
Period size: 943 Copynumber: 2.5 Consensus size: 936
11836096 AGCCATCCAT
* **
11836106 TGACAAGAAAAGTCCTTTTATAGTCACCCATGCCGTTTAAAGCCCAGTTACTAGCTTTAAATTGA
1 TGACAAGAAAAGTCCATTTATAGTCA-CCATGCC-TTTAAAGCCTTGTTACTAGCTTTAAA-TGA
* * ** * * * *
11836171 TTTATAA-TCTCAAAAATGATTTTAAGCTGA-ATTTTTTGCATTTTTGGTCAAAACATATCATAA
63 TTTATAACT-TTATAAATGATTTTAAATTGATTTTTTTTTCATTTTTGGTTAAAACAAATCATAA
* * * * * * * *
11836234 TTGGATGTTTCTGTC-TAGAAACGTAAAGCGAAAACCATCCATTGATAAGAATAGTCCATTTATA
127 TTTGAT-CTT-TG-CATAGAAACATGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCATTTATA
*
11836298 GTCACTCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTATAACTTTATAAATGATTT
189 GTCACTCATGCCTTTGAAAG-CTTGTTACTTGCTTTAAGTGGTTTTATAACTTTATAAATGATTT
* * * * ** *
11836363 TAAATTGAATTTTTTTTATTTTT-CATTGAAGCAGATCATAATTTGATGCCTGCAATGGGAAACG
253 TAAATTGAATTTTTTTCATTTTTGGA-TAAAACAGATCATAATTTGATGTTTGCATTGGGAAAC-
* * * * * * *
11836427 A-GAAGCAAAAGTCATCCATTGACAAGGAAAGTGCATTTGTAGTGACTCATGCCTTTAAAAGCCC
316 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGCCT
* * * ** * *
11836491 AGTTACTAGCTTAAAATGGTTTTATAATTTCATAAATGATTTTAAGTTGTATTGTTTTTCATTTT
381 TGTTACTCGCTTTAAATGG-TTT-TAATTT-ATAAATGATTTTAAAATGAATTGTTTTTCATTTC
* ** * *
11836556 TGGATAAATCAGACAATAAATAGATGTTTGCCTTGGAAAAGGTGAAGCAAAAGCCATCCATTGAC
443 TGCATAAAAAAGACAATAAATAGATGTTTGCATAGGAAAA-GTGAAGCAAAAGCCATCCATTGAC
* * * * * *
11836621 AAGAAAAGTCCATTTGTAGTGACTCATGCCTTTGAAAGCCCAGTTACTAGCTTGAAATGGTTTTA
507 AAGAAAAGTCCATTTATAATCACTCATGACTTTGAAAACCCAGTTACTAGCTTGAAATGGCTTTA
* * * *
11836686 TAAATTCATAAATGATTTTAAGTTGTATTGTTTTTCATTTTTGGATAAATCATATAATAAATAGA
572 TAAATTCATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGCATAAAACAGATAATAAATAGA
* * *
11836751 TGTTTGCCTTGGGAAACGTGAAACAAAAGCCATTCATTGACAAGAAAAGTTCATTTATAGTCTCT
637 TGTTTGCCTTGGGAAACGTGAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * * * *
11836816 CATGCCTTCAAAAGGCTTGATACTCTCCTCATGTGGTTTTCTAATTTTATAAATGATTTTAAATA
702 CATACCTTCAAAAGCCATGATACTCTCCTCAAGTGGTTCTCTAACTTCATAAATGATTTTAAATA
* ** * * *
11836881 GAATTTGTTTTTAATTTTTGGTTAGAATTGATCATTATTTGATGTCTACATTACAAAACATGAAG
767 GAATTTGTTTTTAATTTTTGGTTAAAACAGATCATAATTTGATATCTACATCACAAAACATGAAG
* *
11836946 CAAAAGCCTTCCATTGTCAAGAAAAGTCCATTTATAGTCATTCATGCCCTCAAAAGCCTTGTTAC
832 CAAAAGCCATCCATTGTCAAGAAAAGTCCATTTACAGTCATTCATGCCCTCAAAAGCCTTGTTAC
* * *
11837011 ACACTTTAAATAGTTTTTTTATTCTTAGAAATGATTTTAA
897 ACACTTTAAATAGGTTATATATTCTTAGAAATGATTTTAA
* * * * * * *
11837051 -GGCAAGAAAAGTCCATTTGTAGTCACCTAT-CCTTCAGAAGCCTTGTTCCTTGCTTTAAGTGGT
1 TGACAAGAAAAGTCCATTTATAGTCACC-ATGCCTTTA-AAGCCTTGTTACTAGCTTTAAAT-GA
* * *
11837114 TTTATAACTTTATAAATAATTTTAAATTAAATTTTTTTTT-ATTTTTGGTTAAAACAAATCATAC
63 TTTATAACTTTATAAATGATTTTAAATT-GATTTTTTTTTCATTTTTGGTTAAAACAAATCATAA
* * * * * *
11837178 TTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCCATTGAGAAGAAAAGTTCATTTATAG
127 TTTGATCTTTGCA-T-AGAAACATGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * *
11837243 TCATTCATGCCATTGAAAGACTAGTTACTTACTTTAAATGGTTTTATAA-TCTCATAAATGATTT
190 TCACTCATGCCTTTGAAAG-CTTGTTACTTGCTTTAAGTGGTTTTATAACT-TTATAAATGATTT
* * * *
11837307 TAAGTTGAATTGTTTTTCATTTTTGGATAAAACAGATCATAAATGGATGTTTGTC-TTGAGAAAC
253 TAAATTGAATT-TTTTTCATTTTTGGATAAAACAGATCATAATTTGATGTTTG-CATTGGGAAAC
* * * *
11837371 ATGAAACGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGGCT
316 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGCCT
* *
11837436 TGATACTCGCTTTAAGTGGTTTGCTAACTTTATAAATGATTTTAAAATGAATT-TTTTTCATTTC
381 TGTTACTCGCTTTAAATGGTTT--TAA-TTTATAAATGATTTTAAAATGAATTGTTTTTCATTTC
* * * **
11837500 T-CATTAAAAAAGATC-ATAATTTGATGTTTGCATCAGGAAACA-TGAAGCGAAAGTGATCCATT
443 TGCA-TAAAAAAGA-CAATAAATAGATGTTTGCAT-AGGAAA-AGTGAAGCAAAAGCCATCCATT
* * * *** ** *
11837562 GACAAGAAAAGTTCATTTATAATCTCTTATGACTTTGAAAACTTTGTTACTCTCTTTAAATGGCT
504 GACAAGAAAAGTCCATTTATAATCACTCATGACTTTGAAAACCCAGTTACTAGCTTGAAATGGCT
* * *
11837627 TTATAACTTTATAAATGATTTTACA-TTGAATTTGTATTTT-ATTTTT-CATTAAAACAGATCAT
569 TTATAAATTCATAAATGATTTTA-AGTTGAA-TTGT-TTTTCATTTTTGCA-TAAAACAGATAAT
* * * * * *
11837689 TATTTGATGTTTGCTTTGGGAAATGTGAAGC-AAAGCCATCCATT-ATCAAGAAAAGTCCATTTA
630 AAATAGATGTTTGCCTTGGGAAACGTGAAACAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTA
* * * * *
11837752 TAGTCACTCATACCTTCCAAAGCCATGTTGCT-TGCTTTAAGTGGTTCTCTAACTTCATAAATGA
694 TAGTCACTCATACCTTCAAAAGCCATGATACTCT-CCTCAAGTGGTTCTCTAACTTCATAAATGA
* * * * *
11837816 TTTTAAATTGAGTTT-TTTTT-TTTTTTAGGTTAAAACAGATCATAATTTGATATTTGCATCA-A
758 TTTTAAATAGAATTTGTTTTTAATTTTT-GGTTAAAACAGATCATAATTTGATATCTACATCACA
* * * *
11837878 GAAACGA-GATGCAATATCCATCCATTGAT-AAGAAAAGTCCATTTACAGTCACTT-ATGCCTTC
822 -AAAC-ATGAAGCAAAAGCCATCCATTG-TCAAGAAAAGTCCATTTACAGTCA-TTCATGCCCTC
* * * ** *
11837940 GAAATCTTTGTTACATGCTTTAAAT-GGTTATATATTCTTATAAATGA-TTTAA
883 AAAAGCCTTGTTACACACTTTAAATAGGTTATATATTCTTAGAAATGATTTTAA
* * *
11837992 TGACATGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCGCTTTAAATGAT
1 TGACAAGAAAAGTCCATTTATAGTCAC-CATGCCTTT-AAAGCCTTGTTACTAGCTTTAAATGAT
* ** *
11838057 TGTCTAACTTTATAAATGATTTTAAATTGATTTTTTTTTCATTTTTCATTAAAACAGATCATAAT
64 T-TATAACTTTATAAATGATTTTAAATTGATTTTTTTTTCATTTTTGGTTAAAACAAATCATAAT
*
11838122 TTGATCTTTGCATAAGAAAACATGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCATTTATACT
128 TTGATCTTTGCAT-AG-AAACATGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCATTTATAGT
* *
11838187 CACTCATGCCTTTGAAAGCTTTGTTACTTGCTTTAAGTGATTTTATAACTTTATAACTGATTTTA
191 CACTCATGCCTTTGAAAGC-TTGTTACTTGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTA
* * * * *
11838252 AATTGAAATTTTTTTCATTTTTGGTTAGAACTGATCATTATTTGATGTTTGCATTGGGAAACGTG
255 AATTG-AATTTTTTTCATTTTTGGATAAAACAGATCATAATTTGATGTTTGCATTGGGAAACATG
* * * * *
11838317 AAGTGAAAGGCATCCACTGTG-C-AGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGTCTT
319 AAGCGAAAGCCATCCA-T-TGACAAGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGCCTT
* **
11838380 GTTACACATTTTAAATGGTTTTATATTCTTATAAATGATTTTAA
382 GTTACTCGCTTTAAATGGTTTTA-A-T-TTATAAATGATTTTAA
11838424 GACAAGAAAA
Statistics
Matches: 1121, Mismatches: 206, Indels: 94
0.79 0.14 0.07
Matches are distributed among these distances:
941 8 0.01
942 74 0.07
943 455 0.41
944 388 0.35
945 186 0.17
946 10 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (936 bp):
TGACAAGAAAAGTCCATTTATAGTCACCATGCCTTTAAAGCCTTGTTACTAGCTTTAAATGATTT
ATAACTTTATAAATGATTTTAAATTGATTTTTTTTTCATTTTTGGTTAAAACAAATCATAATTTG
ATCTTTGCATAGAAACATGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
ATGCCTTTGAAAGCTTGTTACTTGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGA
ATTTTTTTCATTTTTGGATAAAACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCGAA
AGCCATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGCCTTGTTACTCGC
TTTAAATGGTTTTAATTTATAAATGATTTTAAAATGAATTGTTTTTCATTTCTGCATAAAAAAGA
CAATAAATAGATGTTTGCATAGGAAAAGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATT
TATAATCACTCATGACTTTGAAAACCCAGTTACTAGCTTGAAATGGCTTTATAAATTCATAAATG
ATTTTAAGTTGAATTGTTTTTCATTTTTGCATAAAACAGATAATAAATAGATGTTTGCCTTGGGA
AACGTGAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAG
CCATGATACTCTCCTCAAGTGGTTCTCTAACTTCATAAATGATTTTAAATAGAATTTGTTTTTAA
TTTTTGGTTAAAACAGATCATAATTTGATATCTACATCACAAAACATGAAGCAAAAGCCATCCAT
TGTCAAGAAAAGTCCATTTACAGTCATTCATGCCCTCAAAAGCCTTGTTACACACTTTAAATAGG
TTATATATTCTTAGAAATGATTTTAA
Found at i:11838297 original size:171 final size:173
Alignment explanation
Indices: 11837992--11838423 Score: 527
Period size: 171 Copynumber: 2.5 Consensus size: 173
11837982 AATGATTTAA
*
11837992 TGACATGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCGCTTTAAATGAT
1 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCGCTTTAAATGAT
* **
11838057 TGTCTAACTTTATAAATGATTTTAAATTGATTTTTTTTTCATTTTTCATTAAAACAGATCATAAT
66 TGTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTCATTAAAACAGATCATAAT
11838122 TTGATCTTTGCATAAGAAAACATGAAGCGAAA-GCAATCCA-T-
131 TTGATCTTTGCATAAGAAAACATGAAGCGAAAGGC-ATCCACTG
* * *
11838163 TGACAAGAAAAGTCCATTTATACTCACTCATGCCTTTGAAAG-CTTTGTTACTTGCTTTAAGTGA
1 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTC-TTGTTACTCGCTTTAAATGA
* * ** * * *
11838227 TTTTATAACTTTATAACTGATTTTAAATTGAAATTTTTTTCATTTTTGGTTAGAACTGATCATTA
65 TTGTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTCATTAAAACAGATCATAA
* ** * * *
11838292 TTTGATGTTTGCATTGGGAAACGTGAAGTGAAAGGCATCCACTG
130 TTTGATCTTTGCATAAGAAAACATGAAGCGAAAGGCATCCACTG
* * * * ** *
11838336 TG-C-AGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGTCTTGTTACACATTTTAAATGGT
1 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCGCTTTAAATGAT
* *
11838399 TTTAT-ATTCTTATAAATGATTTTAA
66 TGTATAACT-TTATAAATGATTTTAA
11838424 GACAAGAAAA
Statistics
Matches: 223, Mismatches: 32, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
170 3 0.01
171 213 0.96
172 5 0.02
173 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (173 bp):
TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCGCTTTAAATGAT
TGTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTCATTAAAACAGATCATAAT
TTGATCTTTGCATAAGAAAACATGAAGCGAAAGGCATCCACTG
Found at i:11838491 original size:88 final size:89
Alignment explanation
Indices: 11838339--11838509 Score: 220
Period size: 88 Copynumber: 1.9 Consensus size: 89
11838329 TCCACTGTGC
* * *
11838339 AGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGTCTTGTTACACATTTTAAATGGTTTTAT
1 AGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGCCTTGGTACACACTTTAAATGGTTTTAT
*
11838404 -ATTCTTATAAATGATTTTAAGACA
66 AACT-TTATAAATGATTTTAAGACA
* * * * * *
11838428 AGAAAAGTCCATTTGTAGTCACTTAT-CCTTTGAAAGCCTTGGTACTCGCTTTAAGTGGTTTTAT
1 AGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGCCTTGGTACACACTTTAAATGGTTTTAT
*
11838492 AACTTTATAATTGATTTT
66 AACTTTATAAATGATTTT
11838510 CAAATGAATT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
88 44 0.63
89 26 0.37
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (89 bp):
AGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGCCTTGGTACACACTTTAAATGGTTTTAT
AACTTTATAAATGATTTTAAGACA
Found at i:11838806 original size:431 final size:425
Alignment explanation
Indices: 11837561--11838811 Score: 1384
Period size: 431 Copynumber: 2.9 Consensus size: 425
11837551 AGTGATCCAT
* * * * * * * *
11837561 TGACAAGAAAAGTTCATTTATAATCTCTTATGACTTTGAAAACTTTGTTACTCTCTTTAAATGGC
1 TGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAAGCCTTGTTACTCGCTTTAAATGGT
*
11837626 TTTATAACTTTATAAATGATTTTACATTGAATTTGTATTTT-ATTTTTCATTAAAACAGATCATT
66 TTTATAACTTTATAAATGATTTTA-AATGAATTT-T-TTTTCATTTTTCATTAAAACAGATCATT
* * * *
11837690 ATTTGATGTTTGCTTTGGGAAATGTGAAGCAAAGCCATCCATTATCAAGAAAAGTCCATTTATAG
128 AATTGATGTTTGCATTGGGAAACGTGAAGCAAAGCCATCCATGAT-AAGAAAAGTCCATTTATAG
* * * * * *
11837755 TCACTCATACCTTCCAAAGCCATGTTGCTTGCTTTAAGTGGTTCTCTAACTTCATAAATGATTTT
192 TCACTCATGCCTTCGAAAGCTA-GTTACTTGCTTTAAGT-GTTTTATAACTTCATAAATGATTTT
* ** * *
11837820 AAATTGAGTTTTTTTTTTTTTTAGGTTAAAACAGATCATAATTTGATATTTGCATCAAGAAACGA
255 AAATTGAATTTTTTTCATTTTT-GGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAACGA
* * ** * * *
11837885 GATGCAATATCCATCCATTGATAAGAAAAGTCCATTTACAGTCACTTATGCCTTCGAAA-TCTTT
319 GAAGCAAAAGGCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTC-TT
**
11837949 GTTACATGCTTTAAATGGTTATATATTCTTATAAATGATTTAA
383 GTTACACACTTTAAATGGTTATATATTCTTATAAATGATTTAA
* * * *
11837992 TGACATGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCGCTTTAAATGAT
1 TGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAAGCCTTGTTACTCGCTTTAAATGGT
* * *
11838057 TGTCTAACTTTATAAATGATTTTAAATTGATTTTTTTTTCATTTTTCATTAAAACAGATCA-TAA
66 TTTATAACTTTATAAATGATTTTAAA-TGAATTTTTTTTCATTTTTCATTAAAACAGATCATTAA
* ** * * * * *
11838121 TTTGATCTTTGCATAAGAAAACATGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCATTTATAC
130 -TTGATGTTTGCATTGGGAAACGTGAAGC-AAAGCCATCCA-TGATAAGAAAAGTCCATTTATAG
* * * *
11838186 TCACTCATGCCTTTGAAAGCTTTGTTACTTGCTTTAAGTGATTTTATAACTTTATAACTGATTTT
192 TCACTCATGCCTTCGAAAGC-TAGTTACTTGCTTTAAGTG-TTTTATAACTTCATAAATGATTTT
* * * * * *
11838251 AAATTGAAATTTTTTTCATTTTTGGTTAGAACTGATCATTATTTGATGTTTGCATTGGGAAACGT
255 AAATTG-AATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAACGA
** * * * * *
11838316 GAAGTGAAAGGCATCCACTG-TGCAGAAAAGTCCATTTGTAGTCAATCATGCCCTTGAAAGTCTT
319 GAAGCAAAAGGCATCCATTGAT-AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTT
* *
11838380 GTTACACATTTTAAATGGTTTTATATTCTTATAAATGATTTTAA
383 GTTACACACTTTAAATGGTTATATATTCTTATAAATGA-TTTAA
* * *
11838424 -GACAAGAAAAGTCCATTTGTAGTCACTTAT-CCTTTGAAAGCCTTGGTACTCGCTTTAAGTGGT
1 TGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAAGCCTTGTTACTCGCTTTAAATGGT
* ** *
11838487 TTTATAACTTTATAATTGATTTTCAAATGAATTTTTTGTTCATTTTTGGTTAAAACATATCATTA
66 TTTATAACTTTATAAATGATTTT-AAATGAATTTTTT-TTCATTTTTCATTAAAACAGATCATTA
*
11838552 ATTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATGGATAAGAAAAGTACA-TTATAG
129 ATTGATGTTTGCATTGGGAAACGTGAAGC-AAAGCCATCCAT-GATAAGAAAAGTCCATTTATAG
* ** ** * *
11838616 TCATTCATGTATTCGAAAGCGTAGTTACTCACTTTAAATAGTTTTATAA-TCTCATAAATAATTT
192 TCACTCATGCCTTCGAAAGC-TAGTTACTTGCTTTAAGT-GTTTTATAACT-TCATAAATGATTT
* * * *** *
11838680 TAAGTTGAATTGTCTTTCATTTTTGGATAAAACAGATCATAAACAGATGTTTGCCTCGAGAAACG
254 TAAATTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAACG
* * *
11838745 AGAAGCAAAAGGCATCCATTGATAAGAAAAAGTTCATTTATAGTCTCTCATGCCTTTGAAAGGCT
318 AGAAGCAAAAGGCATCCATTGATAAG-AAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCT
11838810 TG
382 TG
11838812 ATACTTGCTT
Statistics
Matches: 674, Mismatches: 126, Indels: 40
0.80 0.15 0.05
Matches are distributed among these distances:
429 11 0.02
430 225 0.33
431 413 0.61
432 25 0.04
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (425 bp):
TGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAAGCCTTGTTACTCGCTTTAAATGGT
TTTATAACTTTATAAATGATTTTAAATGAATTTTTTTTCATTTTTCATTAAAACAGATCATTAAT
TGATGTTTGCATTGGGAAACGTGAAGCAAAGCCATCCATGATAAGAAAAGTCCATTTATAGTCAC
TCATGCCTTCGAAAGCTAGTTACTTGCTTTAAGTGTTTTATAACTTCATAAATGATTTTAAATTG
AATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAACGAGAAGCAA
AAGGCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACACA
CTTTAAATGGTTATATATTCTTATAAATGATTTAA
Found at i:11846795 original size:19 final size:19
Alignment explanation
Indices: 11846773--11846810 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
11846763 CACTCTCAAC
11846773 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
11846792 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
11846811 AGTCAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:11847496 original size:172 final size:170
Alignment explanation
Indices: 11847135--11847509 Score: 477
Period size: 172 Copynumber: 2.2 Consensus size: 170
11847125 AGAACAGGGT
**
11847135 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTCACTTGCTTTAAATGG
1 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTCACTCACTTTAAATGG
* * *
11847200 TTTTATAAGCTTATAAATGATTTTAAGGTGAATTGTTTTTCTTTTTGGTTAAAACAGATCATAAT
66 TTTTATAAACTTATAAATGATTTTAAGGTGAATTGTTTTTCCTTTTAGTTAAAACAGATCATAAT
** * *
11847265 TAGATGTTTGGCTCTAGAAACGTGAAGCGAAAGCCATCCA
131 TAGATGTTTGAATCTAGAAACATCAAGCGAAAGCCATCCA
* * * * * **
11847305 TTGACAAAAAAATTCCATTTATTGTCACTCATGCCTTCGAAAGTCTTGTTGCTCACTTTAAATGG
1 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTCACTCACTTTAAATGG
* * * * *
11847370 TTTTCTAAATTTATAAATGATTTTTAA-TTGAATTTTTTTTTCACTTTTAGTTAAAACATATCAT
66 TTTTATAAACTTATAAATGA-TTTTAAGGTGAA-TTGTTTTTC-CTTTTAGTTAAAACAGATCAT
* *
11847434 AATTGGATGTTTGAAT-TAGGAAGCATCAAGC-AATAGCCATCCA
128 AATTAGATGTTTGAATCTA-GAAACATCAAGCGAA-AGCCATCCA
11847477 TTGACAAGAAAAGTCCATTTATAGTCACTCATG
1 TTGACAAGAAAAGTCCATTTATAGTCACTCATG
11847510 GTTTTTTTTT
Statistics
Matches: 174, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
170 77 0.44
171 18 0.10
172 79 0.45
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (170 bp):
TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTCACTCACTTTAAATGG
TTTTATAAACTTATAAATGATTTTAAGGTGAATTGTTTTTCCTTTTAGTTAAAACAGATCATAAT
TAGATGTTTGAATCTAGAAACATCAAGCGAAAGCCATCCA
Found at i:11852779 original size:89 final size:89
Alignment explanation
Indices: 11852602--11852779 Score: 189
Period size: 89 Copynumber: 2.0 Consensus size: 89
11852592 CATCCATTGG
* *
11852602 CAAGAAAAGTCAATTTATAGTCACTCATACCTTAGAAAGCCTTGTTACAAGCTTTAAATGCTTTT
1 CAAGAAAAGTCAATTTATAGTCACCCATACCTTAGAAAGCCTTATTACAAGCTTTAAATGCTTTT
* *
11852667 ATATTCTTATAAAAGATTTTAAGA
66 ATAATCTTATAAAAGATTGTAAGA
* ** * * * * ** *
11852691 CAAGAAAAGTCCATTTATAGTTGCCCATGCTTTTGAAGGCCTTATTACTTGCTTTAAAATGGTTT
1 CAAGAAAAGTCAATTTATAGTCACCCATACCTTAGAAAGCCTTATTACAAGCTTT-AAATGCTTT
*
11852756 TATAAAT-TTATAAATGA-TGTAAGA
65 TAT-AATCTTATAAAAGATTGTAAGA
11852780 TTGAATTTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
89 50 0.69
90 20 0.28
91 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (89 bp):
CAAGAAAAGTCAATTTATAGTCACCCATACCTTAGAAAGCCTTATTACAAGCTTTAAATGCTTTT
ATAATCTTATAAAAGATTGTAAGA
Found at i:11853036 original size:169 final size:170
Alignment explanation
Indices: 11852689--11853618 Score: 755
Period size: 169 Copynumber: 5.5 Consensus size: 170
11852679 AAGATTTTAA
** * * * * *
11852689 GACAAGAAAAGTCCATTTATAGTTGCCCATGCTTTTGAAGGCCTTATTACTTGCTTTAAAATGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAGATGGT
* * * * * *
11852754 TTTATAAATTTATAAATGATGTAAGATTGAATTTTTCT-AATTTTCATTTAAAACATATCATAAT
66 TTTATAACTTTATAAATGATTTAA-CTTGAATTTTTTTCATTTTTCA-TTAAAACAGATCATAAT
* * * ** * *
11852818 TGGATATTTGCATCGAAAAATATGAAGCAAAAGCTATCCATT
129 TTGATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCAATT
* * * *
11852860 GACAAGAAAAATCCATTTGTAGTCACTCATGCCTTCGAAAGCTTTATTACTCGCTTTAAGA-GGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAGATGGT
* * *
11852924 TTCATAACTTTGTAAATGATTTAACTTGATTTTTTTTCATTTTTCATTAAAACAGATCATAATTT
66 TTTATAACTTTATAAATGATTTAACTTGAATTTTTTTCATTTTTCATTAAAACAGATCATAATTT
** *
11852989 GATGTTAT-CATTGGGAAACATGAAGTGAAAGCTATCAACT
131 GATGTT-TGCATTGGGAAACATGAAGCAAAAGCTATCAATT
* * * * *
11853029 AACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTAGCTTTTAG-TGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAGATGGT
** * * *
11853093 TTTATAACTTTATAAATGATTT-ACATTGAACATTTTTCATTTTT-TTTAAAACAAATTATAATT
66 TTTATAACTTTATAAATGATTTAAC-TTGAATTTTTTTCATTTTTCATTAAAACAGATCATAATT
* * *
11853156 TGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCTATT
130 TGATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCAATT
* * * * * **
11853197 GACAACAAAAGTCCATTTATAGTCACTAAAGCCTTTGAAAGTC-TAGTTACGCATTTTAA-ATGG
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTA-TTACTCGCTTTAAGATGG
* * * * ** *
11853260 TTTTATAA-TAGTATAAATGATTTTAAGTTGATTTTTTTTTTATTTTTGGTTAAAACAGTTCAT-
65 TTTTATAACT-TTATAAATGA-TTTAACTTGA-ATTTTTTTCATTTTTCATTAAAACAGATCATA
* * * * * *
11853323 A----A--TTTGCAATGGGAAACTTGAAGCCAAATCCATCCATT
127 ATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCAATT
* * * * * * *
11853361 GTCAAGAAAAGTGCATTTCTAGTCACTCAT-ACTTTCGAAAGCCTTGTTACTCACTTTAAG-TTG
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAGCCTTATTACTCGCTTTAAGATGG
* * * * ** ** *
11853424 TTTTCTAACTTCATAAATGATATTAAATTAAATTTTTTATTGTTTTAGATTAAAACATATCATAA
65 TTTTATAACTTTATAAATGAT-TTAACTTGAATTTTTT-TCATTTTTCATTAAAACAGATCATAA
* *** * * * *
11853489 TTTGATGTCTGCATCAAGAAACATCAAGCAATAGCTAACCATT
128 TTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCAATT
* * * * * * *
11853532 GACAAGAAAAGTCCATTTATTGTTACTCATGCCTTCGAAAAGGCTTGTTACACACTTTAA-ATGG
1 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAAGCCTTATTACTCGCTTTAAGATGG
* *
11853596 TTTAATATCTTTATAAATGATTT
65 TTTTATAACTTTATAAATGATTT
11853619 TAAGACAAGA
Statistics
Matches: 602, Mismatches: 129, Indels: 56
0.76 0.16 0.07
Matches are distributed among these distances:
163 11 0.02
164 115 0.19
165 3 0.00
166 1 0.00
167 3 0.00
168 116 0.19
169 154 0.26
170 44 0.07
171 113 0.19
172 42 0.07
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (170 bp):
GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAGATGGT
TTTATAACTTTATAAATGATTTAACTTGAATTTTTTTCATTTTTCATTAAAACAGATCATAATTT
GATGTTTGCATTGGGAAACATGAAGCAAAAGCTATCAATT
Found at i:11853442 original size:164 final size:162
Alignment explanation
Indices: 11853161--11853492 Score: 355
Period size: 164 Copynumber: 2.0 Consensus size: 162
11853151 TAATTTGATG
* *
11853161 TTTGCATTGGGAAACGTGAAGCAAAAGCCATCTATTGACAACAAAAGTCCATTTATAGTCACTAA
1 TTTGCAATGGGAAACGTGAAGCAAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTAA
* * * * *
11853226 AGCCTTTGAAAGTCTAGTTACGCATTTTAAATGGTTTTATAATAGTATAAATGATTTTAAGTTGA
66 A-CCTTTGAAAGCCTAGTTACGCACTTTAAATGGTTTTATAATA-TATAAATGATATTAAATTAA
* * * *
11853291 TTTTTTTTTTATTTTTGGTTAAAACAGT-TCATAA
129 ATTTTTTATTATTTTAGATTAAAACA-TATCATAA
* * * * * * *
11853325 TTTGCAATGGGAAACTTGAAGCCAAATCCATCCATTGTCAAGAAAAGTGCATTTCTAGTCACTCA
1 TTTGCAATGGGAAACGTGAAGCAAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACT-A
* * * * * *
11853390 TA-CTTTCGAAAGCCTTGTTACTCACTTTAAGTTGTTTTCTAACT-TCATAAATGATATTAAATT
65 AACCTTT-GAAAGCCTAGTTACGCACTTTAAATGGTTTTATAA-TAT-ATAAATGATATTAAATT
*
11853453 AAATTTTTTATTGTTTTAGATTAAAACATATCATAA
127 AAATTTTTTATTATTTTAGATTAAAACATATCATAA
11853489 TTTG
1 TTTG
11853493 ATGTCTGCAT
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
163 6 0.04
164 129 0.93
165 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (162 bp):
TTTGCAATGGGAAACGTGAAGCAAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTAA
ACCTTTGAAAGCCTAGTTACGCACTTTAAATGGTTTTATAATATATAAATGATATTAAATTAAAT
TTTTTATTATTTTAGATTAAAACATATCATAA
Found at i:11853700 original size:89 final size:90
Alignment explanation
Indices: 11853532--11853707 Score: 237
Period size: 89 Copynumber: 2.0 Consensus size: 90
11853522 GCTAACCATT
* * * *
11853532 GACAAGAAAAGTCCATTTATTGTTACTCATGCCTTCGAAAAGGCTTGTTACACACTTTAAATGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCACGCCTTCGAAAAGCCTTGTTACACACTTTAAATGGT
*
11853597 TTAATATCTTTATAAATGATTTTAA
66 TTAATAACTTTATAAATGATTTTAA
* * * *
11853622 GACAAGAAAAGTCCATTTATAGTCACTCACGCCTTTG-AAATCCTTGTTACTCACTTTAAGTGGT
1 GACAAGAAAAGTCCATTTATAGTCACTCACGCCTTCGAAAAGCCTTGTTACACACTTTAAATGGT
** *
11853686 TTTGTAACTTTATAAGTGATTT
66 TTAATAACTTTATAAATGATTT
11853708 CAATTGAATT
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
89 41 0.55
90 33 0.45
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (90 bp):
GACAAGAAAAGTCCATTTATAGTCACTCACGCCTTCGAAAAGCCTTGTTACACACTTTAAATGGT
TTAATAACTTTATAAATGATTTTAA
Found at i:11853996 original size:170 final size:171
Alignment explanation
Indices: 11853624--11854612 Score: 894
Period size: 170 Copynumber: 5.8 Consensus size: 171
11853614 GATTTTAAGA
* * * *
11853624 CAAGAAAAGTCCATTTATAGTCACTCACGCCTTTGAAATCCTTGTTACTCACTTTAAGTGGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* * * * * *
11853689 GTAACTTTATAAGTGATTTCAA-TTGAA-TTTTTTTCATTTTTCGTTAAAACAGATCCTAATTTG
66 ATAACTTTATAAATGATTTTAATTTAAATTTTTTTTC-TTTTTAGTTAAAACAGATCATAATTTG
* *
11853752 ATCG-TTGCATTGGGAAACATGAAGCAAAAGCCATCCATT-TT
130 AT-GTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAT
* * * ** *
11853793 CAAGAAAAGTCCATTTATAGTTACTCATGCCTTCGAAAGCCTAGTTATTTGCTTTAAATGGTTGT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* * *
11853858 GTAAGC-TTATAAATGATTTTAATTTAAATTTTTTTTCCTTTTAGTT-AAACAGATCATAATTAG
66 ATAA-CTTTATAAATGATTTTAATTTAAATTTTTTTTCTTTTTAGTTAAAACAGATCATAATTTG
* * ** *
11853921 ATGTTTGCCTTTGGAAACGTGAAGTGAAAGCCAACCATTGAT
130 ATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAT
* * * * * * * *
11853963 AAAAAAAAGTCCATTTATTGTCACTCATGCCTTCGGAAGCCTTGTTGCTCGCTTGAAGTGGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* * * * * * *
11854028 CTAAGTTTATAAATGATTTTAAATTGAATTTTTTTTTTATTTTAGGTTAAAACATATTATAATTT
66 ATAACTTTATAAATGATTTTAATTTAAATTTTTTTTCT-TTTTA-GTTAAAACAGATCATAATTT
* *** * ** *
11854093 GATATTTGCATCAAGAAATGTGAAGTGAAAGCCATCCATT-AA
129 GATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAT
* * * * * *
11854135 CGAGAAAAGTCCATTTATAGTCACTAAAGCCTTC-AAAGGCCTAGTTAATCACCTTAAATGGTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GCCTTGTTACTCACTTTAAATGGTTT
* * * * *
11854199 TATAA-TCGTATAAATGATTTTAAGTT-GATTTTTTTTCATTTTTTGTTAAAACA-ATTCATATT
65 TATAACT-TTATAAATGATTTTAATTTAAATTTTTTTTC-TTTTTAGTTAAAACAGA-TCATAAT
*
11854261 TTGATGTTTGCAGTGGGAAACGTGAAGCAAAAGCCATCCATTG-T
127 TTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAT
* * * * ** ** *
11854305 CAAGAAAAGTGCATTTATGGTCACTCATACTTTCCTAAGCCTTGTTAC-CTTTTTTAAATAGTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC-ACTTTAAATGGTTT
* * * * * * * *
11854369 TCTAACTTTAAAAATGATTTTGAATTGAAATTTTTTTATATTTTTGGTTAAAACATATTATATTT
65 TATAACTTTATAAATGATTTT-AATTTAAATTTTTTT-TCTTTTTAGTTAAAACAGATCATAATT
* * * * *
11854434 TGATATTT-CTATTTGGAAACATAAAGCAAAAGACATCCATTGA-
128 TGATGTTTGC-ATTGGGAAACGTGAAGCAAAAGCCATCCATTGAT
* * * * * *
11854477 CAAGAAAAGTCCATTTACAGTCACTCATACCTTTGAAAGCTTTGTTACCCACTTTAAGTGGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* * * * *
11854542 ATAACTTTATAAATGATTTTTAA-TTGAATTTTTTTTATTTTTGGTTAGAACAAATCATAATTTG
66 ATAACTTTATAAATGA-TTTTAATTTAAATTTTTTTTCTTTTTAGTTAAAACAGATCATAATTTG
11854606 ATGTTTG
130 ATGTTTG
11854613 TNNNNNNNNN
Statistics
Matches: 660, Mismatches: 134, Indels: 50
0.78 0.16 0.06
Matches are distributed among these distances:
168 1 0.00
169 121 0.18
170 236 0.36
171 46 0.07
172 203 0.31
173 53 0.08
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (171 bp):
CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
ATAACTTTATAAATGATTTTAATTTAAATTTTTTTTCTTTTTAGTTAAAACAGATCATAATTTGA
TGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAT
Found at i:11854347 original size:342 final size:338
Alignment explanation
Indices: 11853628--11854612 Score: 991
Period size: 342 Copynumber: 2.9 Consensus size: 338
11853618 TTAAGACAAG
* ** * * *
11853628 AAAAGTCCATTTATAGTCACTCACGCCTT-TGAAATCCTTGTTACTCACTTTAAGTGGTTTTGTA
1 AAAAGTCCATTTATGGTCACTCATACCTTCCG-AAGCCTTGTTACTCACTTTAAGTGGTTTTCTA
* * * * * ** *
11853692 ACTTTATAAGTGA-TTTCAATTGAA-TTTTTTTCATTTTTCGTTAAAACAGATCCTAATTTGATC
65 ACTTTATAAATGATTTTAAATTGAATTTTTTTTTATTTTTGGTTAAAACATATTATAATTTGATA
* * ** * *
11853755 GTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTTTCAAGAAAAGTCCATTTATAGTTACTCA
130 TTTGCATTAGGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTCACTAA
* * ** * * *
11853820 TGCCTTCGAAAGCCTAGTTATTTGCTTTAAATGGTTGTGTAAGCTTATAAATGATTTTAATTTAA
195 AGCCTTC-AAAGCCTAGTTAATCACTTTAAATGGTTTTATAA-CTTATAAATGATTTTAA-TT-G
* * ** * **
11853885 ATTTTTTTTC-CTTTTAGTT-AAACAGATCATAATTAGATGTTTGCCTTTGGAAACGTGAAGTGA
256 ATTTTTTTTCATTTTTAGTTAAAACA-ATCATAATTTGATGTTTGCAGTGGGAAACGTGAAGCAA
11853948 AAGCCAACCATTGATAAAA
320 AAGCCAACCATTGATAAAA
* * * * * *
11853967 AAAAGTCCATTTATTGTCACTCATGCCTTCGGAAGCCTTGTTGCTCGCTTGAAGTGGTTTTCTAA
1 AAAAGTCCATTTATGGTCACTCATACCTTCCGAAGCCTTGTTACTCACTTTAAGTGGTTTTCTAA
* *
11854032 GTTTATAAATGATTTTAAATTGAATTTTTTTTTTATTTTAGGTTAAAACATATTATAATTTGATA
66 CTTTATAAATGATTTTAAATTGAA-TTTTTTTTTATTTTTGGTTAAAACATATTATAATTTGATA
* * ** ** *
11854097 TTTGCATCAAGAAATGTGAAGTGAAAGCCATCCATTAACGAGAAAAGTCCATTTATAGTCACTAA
130 TTTGCATTAGGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTCACTAA
* *
11854162 AGCCTTCAAAGGCCTAGTTAATCACCTTAAATGGTTTTATAATCGTATAAATGATTTTAAGTTGA
195 AGCCTTCAAA-GCCTAGTTAATCACTTTAAATGGTTTTATAA-CTTATAAATGATTTTAA-TTGA
* *
11854227 TTTTTTTTCATTTTTTGTTAAAACAATTCATATTTTGATGTTTGCAGTGGGAAACGTGAAGCAAA
257 TTTTTTTTCATTTTTAGTTAAAACAA-TCATAATTTGATGTTTGCAGTGGGAAACGTGAAGCAAA
* * *
11854292 AGCCATCCATTG-TCAAG
321 AGCCAACCATTGATAAAA
* * * ** * *
11854309 AAAAGTGCATTTATGGTCACTCATACTTTCCTAAGCCTTGTTAC-CTTTTTTAAATAGTTTTCTA
1 AAAAGTCCATTTATGGTCACTCATACCTTCCGAAGCCTTGTTACTC-ACTTTAAGTGGTTTTCTA
* * * *
11854373 ACTTTAAAAATGATTTTGAATTGAAATTTTTTTATATTTTTGGTTAAAACATATTATATTTTGAT
65 ACTTTATAAATGATTTTAAATTG-AATTTTTTTTTATTTTTGGTTAAAACATATTATAATTTGAT
* * * * *
11854438 ATTT-CTATTTGGAAACATAAAGCAAAAGACATCCATTGACAAGAAAAGTCCATTTACAGTCACT
129 ATTTGC-ATTAGGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTCACT
* * * * ** *
11854502 CATA-CCTTTGAAAGCTTTGTTACCCACTTTAAGTGGTTTTATAACTTTATAAATGATTTTTAAT
193 -AAAGCC-TTCAAAGCCTAGTTAATCACTTTAAATGGTTTTATAAC-TTATAAATGA-TTTTAAT
* *
11854566 TGAATTTTTTTT-ATTTTTGGTTAGAACAAATCATAATTTGATGTTTG
254 TG-ATTTTTTTTCATTTTTAGTTAAAAC-AATCATAATTTGATGTTTG
11854613 TNNNNNNNNN
Statistics
Matches: 533, Mismatches: 96, Indels: 31
0.81 0.15 0.05
Matches are distributed among these distances:
339 65 0.12
340 11 0.02
341 16 0.03
342 368 0.69
343 73 0.14
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (338 bp):
AAAAGTCCATTTATGGTCACTCATACCTTCCGAAGCCTTGTTACTCACTTTAAGTGGTTTTCTAA
CTTTATAAATGATTTTAAATTGAATTTTTTTTTATTTTTGGTTAAAACATATTATAATTTGATAT
TTGCATTAGGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTCACTAAA
GCCTTCAAAGCCTAGTTAATCACTTTAAATGGTTTTATAACTTATAAATGATTTTAATTGATTTT
TTTTCATTTTTAGTTAAAACAATCATAATTTGATGTTTGCAGTGGGAAACGTGAAGCAAAAGCCA
ACCATTGATAAAA
Found at i:11862323 original size:80 final size:80
Alignment explanation
Indices: 11862190--11862351 Score: 290
Period size: 80 Copynumber: 2.0 Consensus size: 80
11862180 ATTGATCTAA
11862190 AATTTCACTAAGTACTAAAATTAACACAATTCAGTTTCATCTAAACAAACAAAATCAAGTAACTA
1 AATTTCACTAAGTACTAAAATTAACACAATTCAGTTTCATCTAAACAAACAAAATCAAGTAACTA
11862255 AATAAATTATAAATT
66 AATAAATTATAAATT
* *
11862270 AATTTCACTAAGTACTAAAATTAACACAATTCAGTCTT-ATCTAAGCAAACAAAATCAATTAACT
1 AATTTCACTAAGTACTAAAATTAACACAATTCAGT-TTCATCTAAACAAACAAAATCAAGTAACT
11862334 AAATAAATTATAAATT
65 AAATAAATTATAAATT
11862350 AA
1 AA
11862352 CTAAATCTAA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
80 77 0.97
81 2 0.03
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.30
Consensus pattern (80 bp):
AATTTCACTAAGTACTAAAATTAACACAATTCAGTTTCATCTAAACAAACAAAATCAAGTAACTA
AATAAATTATAAATT
Found at i:11864290 original size:15 final size:15
Alignment explanation
Indices: 11864266--11864299 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11864256 GGGGGTAAGT
11864266 ATCATAAACTCAGTG
1 ATCATAAACTCAGTG
* *
11864281 ATCATCAACTCCGTG
1 ATCATAAACTCAGTG
11864296 ATCA
1 ATCA
11864300 GGGCGTAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.26
Consensus pattern (15 bp):
ATCATAAACTCAGTG
Found at i:11866957 original size:313 final size:312
Alignment explanation
Indices: 11866389--11867013 Score: 1205
Period size: 313 Copynumber: 2.0 Consensus size: 312
11866379 CTAAGTTTCA
*
11866389 AATCTCTTTTTGGATGGTGAAATATCAAATCTCAACAAGGTAAAGGGAAGGAAATCTTCATGGTT
1 AATCTCTTTTTGGATGGTGAAATATCAAATCTCAACAAGGTAAAGGGAAGGAAATCTTCAAGGTT
11866454 GCCTTAGGTTTTCTTCAAAACCAAGCCTCTCTTAAAATTTCTCCTTTCTTCCCTTTTCTCTCTAC
66 GCCTTAGGTTTTCTTCAAAACCAAGCCTCTCTTAAAATTTCTCCTTTCTTCCCTTTTCTCTCTAC
11866519 CATGTGGGTGGAACTTACAAAGCCATTTCTTTCCTTTCTTTTCCTCTCAAAGGCACGGTTTGCCC
131 CATGTGGGTGGAACTTACAAAGCCATTTCTTTCCTTTCTTTTCCTCTCAAAGGCACGGTTTGCCC
11866584 AAGTTCCTAAAGCCTTCATTACCTTTTTTACTTTCTTTTTGTTATTTCTTAGTTTTGTTTCTTTA
196 AAGTTCCTAAAGCCTTCATTACCTTTTTTACTTTCTTTTTGTTATTTCTTAGTTTTGTTTCTTTA
11866649 GTTTCTTATAGGACCACCTTGCCACCCAATAATTCTTCATGCACCAATATTC
261 GTTTCTTATAGGACCACCTTGCCACCCAATAATTCTTCATGCACCAATATTC
*
11866701 NAATCTCTTTTTGGATGGTGAAATATCAAATCTCAACAAGGTAAAGGGAGGGAAATCTTCAAGGT
1 -AATCTCTTTTTGGATGGTGAAATATCAAATCTCAACAAGGTAAAGGGAAGGAAATCTTCAAGGT
11866766 TGCCTTAGGTTTTCTTCAAAACCAAGCCTCTCTTAAAATTTCTCCTTTCTTCCCTTTTCTCTCTA
65 TGCCTTAGGTTTTCTTCAAAACCAAGCCTCTCTTAAAATTTCTCCTTTCTTCCCTTTTCTCTCTA
11866831 CCATGTGGGTGGAACTTACAAAGCCATTTCTTTCCTTTCTTTTCCTCTCAAAGGCACGGTTTGCC
130 CCATGTGGGTGGAACTTACAAAGCCATTTCTTTCCTTTCTTTTCCTCTCAAAGGCACGGTTTGCC
11866896 CAAGTTCCTAAAGCCTTCATTACCTTTTTTACTTTCTTTTTGTTATTTCTTAGTTTTGTTTCTTT
195 CAAGTTCCTAAAGCCTTCATTACCTTTTTTACTTTCTTTTTGTTATTTCTTAGTTTTGTTTCTTT
* *
11866961 AGTTTCTTATAGGACCACCTTGCCACCCAATGATTTTTCATGCACCAATATTC
260 AGTTTCTTATAGGACCACCTTGCCACCCAATAATTCTTCATGCACCAATATTC
11867014 CCTTCATTTT
Statistics
Matches: 308, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
313 308 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (312 bp):
AATCTCTTTTTGGATGGTGAAATATCAAATCTCAACAAGGTAAAGGGAAGGAAATCTTCAAGGTT
GCCTTAGGTTTTCTTCAAAACCAAGCCTCTCTTAAAATTTCTCCTTTCTTCCCTTTTCTCTCTAC
CATGTGGGTGGAACTTACAAAGCCATTTCTTTCCTTTCTTTTCCTCTCAAAGGCACGGTTTGCCC
AAGTTCCTAAAGCCTTCATTACCTTTTTTACTTTCTTTTTGTTATTTCTTAGTTTTGTTTCTTTA
GTTTCTTATAGGACCACCTTGCCACCCAATAATTCTTCATGCACCAATATTC
Found at i:11868771 original size:25 final size:25
Alignment explanation
Indices: 11868724--11868829 Score: 77
Period size: 29 Copynumber: 3.9 Consensus size: 25
11868714 CGGTGCTAAA
*
11868724 GCACCTAACAAAGTTTAAAAGGTAC
1 GCACCTAACAAAGTTCAAAAGGTAC
* * * *
11868749 GCACCTTACAAAGTTCCATAGGTGCTAA
1 GCACCTAACAAAGTT-CAAAAG-G-TAC
11868777 GCCACCTAACAAAGTTCAAAAGGTAC
1 G-CACCTAACAAAGTTCAAAAGGTAC
* *
11868803 TAAGGCACCTAATAAAGTTCATAAGGT
1 ----GCACCTAACAAAGTTCAAAAGGT
11868830 GTAAATGAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
25 14 0.23
26 5 0.08
27 2 0.03
28 7 0.11
29 33 0.53
30 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22
Consensus pattern (25 bp):
GCACCTAACAAAGTTCAAAAGGTAC
Found at i:11868792 original size:29 final size:29
Alignment explanation
Indices: 11868750--11868830 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
11868740 AAAAGGTACG
*
11868750 CACCTTACAAAGTTCCATAGGTGCTAAGC
1 CACCTAACAAAGTTCCATAGGTGCTAAGC
* * * *
11868779 CACCTAACAAAGTTCAAAAGGTACTAAGG
1 CACCTAACAAAGTTCCATAGGTGCTAAGC
*
11868808 CACCTAATAAAGTT-CATAAGGTG
1 CACCTAACAAAGTTCCAT-AGGTG
11868831 TAAATGAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 1 0.02
29 41 0.98
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (29 bp):
CACCTAACAAAGTTCCATAGGTGCTAAGC
Found at i:11876261 original size:152 final size:151
Alignment explanation
Indices: 11876082--11876384 Score: 597
Period size: 152 Copynumber: 2.0 Consensus size: 151
11876072 TTGTATATTA
11876082 TGTAAGGTTGTTTCAAGGTTTAAAAAGAAAAAGTAAAATAGTTGTAGTTTTTTAATGGACTCGTC
1 TGTAAGGTTGTTTCAAGGTTTAAAAAGAAAAAGTAAAATAGTTGTAGTTTTTTAATGGACTCGTC
11876147 AATCGATCAAGCTATCTATCAAGCCTCTAGGTTGGTCCAACTCTGCTTGGATATTGAACAAGATT
66 AATCGATCAAGCTATCTATCAAGCCTCTAGGTTGGTCCAACTCTGCTTGGATATTGAACAAGATT
11876212 TGGTAGATTCAATTTTGGTCC
131 TGGTAGATTCAATTTTGGTCC
11876233 NTGTAAGGTTGTTTCAAGGTTTAAAAAGAAAAAGTAAAATAGTTGTAGTTTTTTAATGGACTCGT
1 -TGTAAGGTTGTTTCAAGGTTTAAAAAGAAAAAGTAAAATAGTTGTAGTTTTTTAATGGACTCGT
11876298 CAATCGATCAAGCTATCTATCAAGCCTCTAGGTTGGTCCAACTCTGCTTGGATATTGAACAAGAT
65 CAATCGATCAAGCTATCTATCAAGCCTCTAGGTTGGTCCAACTCTGCTTGGATATTGAACAAGAT
11876363 TTGGTAGATTCAATTTTGGTCC
130 TTGGTAGATTCAATTTTGGTCC
11876385 GACTTATTAT
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
152 151 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (151 bp):
TGTAAGGTTGTTTCAAGGTTTAAAAAGAAAAAGTAAAATAGTTGTAGTTTTTTAATGGACTCGTC
AATCGATCAAGCTATCTATCAAGCCTCTAGGTTGGTCCAACTCTGCTTGGATATTGAACAAGATT
TGGTAGATTCAATTTTGGTCC
Found at i:11879911 original size:21 final size:21
Alignment explanation
Indices: 11879885--11879927 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
11879875 CTTTGTGGGA
11879885 TCCGAAAAAGAGACATGTAAG
1 TCCGAAAAAGAGACATGTAAG
*
11879906 TCCGAAAAAGAGACGTGTAAG
1 TCCGAAAAAGAGACATGTAAG
11879927 T
1 T
11879928 AGTGGCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.14, G:0.26, T:0.16
Consensus pattern (21 bp):
TCCGAAAAAGAGACATGTAAG
Found at i:11889755 original size:25 final size:24
Alignment explanation
Indices: 11889726--11889802 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
11889716 ATATGAATTT
11889726 ATGGCCTAGCCACGTATAACAACC
1 ATGGCCTAGCCACGTATAACAACC
* *
11889750 AGTGGCCTTGCCACATATAATCACGGACC
1 A-TGGCCTAGCCACGTATAA-CA---ACC
* *
11889779 ATGGCCTAGCCAAGTCTAACAACC
1 ATGGCCTAGCCACGTATAACAACC
11889803 CGTCGATAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
24 4 0.10
25 16 0.38
26 2 0.05
27 2 0.05
28 14 0.33
29 4 0.10
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.18
Consensus pattern (24 bp):
ATGGCCTAGCCACGTATAACAACC
Found at i:11891613 original size:312 final size:310
Alignment explanation
Indices: 11891043--11891667 Score: 1151
Period size: 312 Copynumber: 2.0 Consensus size: 310
11891033 CACCTACATT
11891043 TTTCCACCATTTAGGAATTCAAAGGTTAAGAACAATTTACCACTTTTTTGTTTTATCTGAAATCC
1 TTTCCACCATTTAGGAATTCAAAGGTTAAGAACAATTTACCACTTTTTTGTTTTATCTGAAATCC
11891108 GTCATCTAACCAAGGATCAATGTCAGGCATGCATCCATATTCTTCAAACCTTAGAAATCTTTACT
66 GTCATCTAACCAAGGATCAATGTCAGGCATGCATCCATATTCTTCAAACCTTAGAAATCTTTACT
11891173 GCCACAAATACAACCCAACATTAGCAATCCAAATTTCCAAGGATACATTCAAATTAAGGCCATTC
131 GCCACAAATACAACCCAACATTAGCAATCCAAATTTCCAAGGATACATTCAAATTAAGGCCATTC
* * * *
11891238 TTTTACCTTTTCCTTACTTGAACCATAAAACCTAGCCACACATCCTCTTCCAAGTTTAAAATCTC
196 TCTTACCTTTTCCTTACTTGAACCACAAAACCGAGCCACACATCCTCTTCCAAGTTAAAAATCTC
*
11891303 TTTTTGGATGGTGAAATATCAAATCTAAACAAGGTGAAGGGGAAGGAAATC
261 TTTTTGGATGGTGAAATATCAAATCTAAACAAGGT-AAAGGGAAGGAAATC
11891354 TTNTCCACCATTTAGGAATTCAAAGGTTAAGAACAATTTACCACTTTTTTGTTTTATCTGAAATC
1 TT-TCCACCATTTAGGAATTCAAAGGTTAAGAACAATTTACCACTTTTTTGTTTTATCTGAAATC
11891419 CGTCATCTAACCAAGGATCAATGTCAGGCATGCATCCATATTCTTCAAACCTTAGAAATCTTTAC
65 CGTCATCTAACCAAGGATCAATGTCAGGCATGCATCCATATTCTTCAAACCTTAGAAATCTTTAC
*
11891484 TGCCACAAATACAACCCAACATTAGCAATCCAAATTTCCAAGGATACATTCAAATTAAGGTCATT
130 TGCCACAAATACAACCCAACATTAGCAATCCAAATTTCCAAGGATACATTCAAATTAAGGCCATT
*
11891549 CTCTTACCTTTTCCTTACTTGAATCACAAAACCGAGCCACACATCCTCTTCCAAGTTAAAAATCT
195 CTCTTACCTTTTCCTTACTTGAACCACAAAACCGAGCCACACATCCTCTTCCAAGTTAAAAATCT
* *
11891614 CTTTTTGGATGGTGCAATATCAAATCTCAACAAGGTAAAGGGAAGGAAATC
260 CTTTTTGGATGGTGAAATATCAAATCTAAACAAGGTAAAGGGAAGGAAATC
11891665 TTT
1 TTT
11891668 AAGGTTGCCT
Statistics
Matches: 304, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
310 1 0.00
311 18 0.06
312 285 0.94
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (310 bp):
TTTCCACCATTTAGGAATTCAAAGGTTAAGAACAATTTACCACTTTTTTGTTTTATCTGAAATCC
GTCATCTAACCAAGGATCAATGTCAGGCATGCATCCATATTCTTCAAACCTTAGAAATCTTTACT
GCCACAAATACAACCCAACATTAGCAATCCAAATTTCCAAGGATACATTCAAATTAAGGCCATTC
TCTTACCTTTTCCTTACTTGAACCACAAAACCGAGCCACACATCCTCTTCCAAGTTAAAAATCTC
TTTTTGGATGGTGAAATATCAAATCTAAACAAGGTAAAGGGAAGGAAATC
Found at i:11891859 original size:22 final size:22
Alignment explanation
Indices: 11891834--11891876 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
11891824 CCTTTTTCCC
*
11891834 TTTTCTTTTTGTTA-TTTCTTAG
1 TTTTCTTTCT-TTAGTTTCTTAG
*
11891856 TTTTGTTTCTTTAGTTTCTTA
1 TTTTCTTTCTTTAGTTTCTTA
11891877 TTAGACCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.72
Consensus pattern (22 bp):
TTTTCTTTCTTTAGTTTCTTAG
Found at i:11893674 original size:28 final size:24
Alignment explanation
Indices: 11893643--11893700 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 24
11893633 GGTGCCTCAT
11893643 AAAGTCAAACAGTGCTACGGCACCTAAC
1 AAAGTCAAA-AG-G-TAC-GCACCTAAC
*
11893671 AAAGTTCAAAAGGTACGCACCTTAC
1 AAAG-TCAAAAGGTACGCACCTAAC
11893696 AAAGT
1 AAAGT
11893701 TCCATAGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 1 0.04
25 12 0.43
26 3 0.11
27 1 0.04
28 6 0.21
29 5 0.18
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.17
Consensus pattern (24 bp):
AAAGTCAAAAGGTACGCACCTAAC
Found at i:11893738 original size:29 final size:28
Alignment explanation
Indices: 11893662--11893781 Score: 104
Period size: 29 Copynumber: 4.3 Consensus size: 28
11893652 CAGTGCTACG
*
11893662 GCACCTAACAAAGTTCAAAA-G-G-TAC
1 GCACCTAACAAAGTTCAAAAGGTGCTAA
* * *
11893687 GCACCTTACAAAGTTCCATAGGTGCTAA
1 GCACCTAACAAAGTTCAAAAGGTGCTAA
**
11893715 GACACCTAACAAAGTTTTAAAGGTAG-TAA
1 G-CACCTAACAAAGTTCAAAAGGT-GCTAA
* *
11893744 CGCACCTAATAAAGTTCAAAAGGTGCAAA
1 -GCACCTAACAAAGTTCAAAAGGTGCTAA
11893773 GGCACCTAA
1 -GCACCTAA
11893782 AAGGGTTAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
25 17 0.23
26 1 0.01
27 1 0.01
28 4 0.05
29 50 0.67
30 2 0.03
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (28 bp):
GCACCTAACAAAGTTCAAAAGGTGCTAA
Found at i:11893769 original size:58 final size:54
Alignment explanation
Indices: 11893641--11893781 Score: 142
Period size: 58 Copynumber: 2.6 Consensus size: 54
11893631 AAGGTGCCTC
* *
11893641 ATAAAG-TCAAACA-GTGCTACGGCACCTAACAAAGTTCAAAAGGTACGCACCTT
1 ATAAAGTTCAAA-AGGTGCTAAGGCACCTAACAAAGTTCAAAAGGTACGCACCTA
* * * * * *
11893694 ACAAAGTTCCATAGGTGCTAAGACACCTAACAAAGTTTTAAAGGTAGTAACGCACCTA
1 ATAAAGTTCAAAAGGTGCTAAGGCACCTAACAAAG-TTCAAAAG--GT-ACGCACCTA
*
11893752 ATAAAGTTCAAAAGGTGCAAAGGCACCTAA
1 ATAAAGTTCAAAAGGTGCTAAGGCACCTAA
11893782 AAGGGTTAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
53 6 0.09
54 22 0.32
55 6 0.09
57 2 0.03
58 33 0.48
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (54 bp):
ATAAAGTTCAAAAGGTGCTAAGGCACCTAACAAAGTTCAAAAGGTACGCACCTA
Found at i:11897101 original size:37 final size:36
Alignment explanation
Indices: 11897055--11897138 Score: 116
Period size: 38 Copynumber: 2.3 Consensus size: 36
11897045 AGTTTAATTA
*
11897055 AAGTCAGTTTATTT-TAACGTTTAAGTTAGTGGGGTT
1 AAGT-AGTTTATTTATAACGTTTAAGTTAGCGGGGTT
*
11897091 AAGGCTAGTTTATTTATCACGTTTAAGTTAGCGGGGTT
1 AA-G-TAGTTTATTTATAACGTTTAAGTTAGCGGGGTT
11897129 AAGTAGTTTA
1 AAGTAGTTTA
11897139 CAAGTTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
36 9 0.21
37 11 0.26
38 23 0.53
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (36 bp):
AAGTAGTTTATTTATAACGTTTAAGTTAGCGGGGTT
Found at i:11909748 original size:19 final size:19
Alignment explanation
Indices: 11909724--11909774 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
11909714 TCAGACCACT
*
11909724 CTTAGTTGACTAAGATTTC
1 CTTAGTCGACTAAGATTTC
*
11909743 CTTAGTCAACTAAGATTTC
1 CTTAGTCGACTAAGATTTC
11909762 CTTAGTCGACTAA
1 CTTAGTCGACTAA
11909775 ATGCACTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (19 bp):
CTTAGTCGACTAAGATTTC
Found at i:11914828 original size:43 final size:43
Alignment explanation
Indices: 11914771--11914889 Score: 168
Period size: 43 Copynumber: 2.8 Consensus size: 43
11914761 GTAATTATAT
* **
11914771 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAAGTCGAG-GA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGA
*
11914814 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
* *
11914857 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCAT
11914890 GAGCTGGTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 67 0.99
ACGTcount: A:0.22, C:0.20, G:0.38, T:0.20
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
Found at i:11914899 original size:43 final size:43
Alignment explanation
Indices: 11914781--11914902 Score: 158
Period size: 43 Copynumber: 2.8 Consensus size: 43
11914771 TGACTCGGCT
* **
11914781 ATGTGCGAGTAGGGAGTGCGCATAAG-TCGAG-GATGACCCGGTT
1 ATGTGCGAGTAGGGAGTGCGCATAAGCT-G-GTGATGACCCAGCC
* *
11914824 ATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCAGCC
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
*
11914867 ATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGA
11914903 TGATGATGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.23, C:0.18, G:0.39, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
Found at i:11914948 original size:2 final size:2
Alignment explanation
Indices: 11914935--11914965 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
11914925 TGATGATGGG
*
11914935 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11914966 GTGTGTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11915337 original size:39 final size:40
Alignment explanation
Indices: 11915260--11915350 Score: 103
Period size: 39 Copynumber: 2.3 Consensus size: 40
11915250 ACGCATTCTT
* * * * * *
11915260 GCTGCAACGAGAAACTTTTTGTTTTCTGGGTTGCAATTTC
1 GCTGCAGCGAGAAACATTCTGTTTTCTAGGTAGAAATTTC
*
11915300 GCTGCAGCGAGAAACATTCTG-TTTCTAGGTAGAAATTTT
1 GCTGCAGCGAGAAACATTCTGTTTTCTAGGTAGAAATTTC
*
11915339 GCTACAGCGAGA
1 GCTGCAGCGAGA
11915351 TTGAATCTCG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 25 0.58
40 18 0.42
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
GCTGCAGCGAGAAACATTCTGTTTTCTAGGTAGAAATTTC
Found at i:11930799 original size:10 final size:11
Alignment explanation
Indices: 11930772--11930808 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
11930762 TAAGTTAATA
*
11930772 ATGTTAGTTTT
1 ATGTTATTTTT
11930783 ATGTTATTTTT
1 ATGTTATTTTT
11930794 AT-TTATTTTT
1 ATGTTATTTTT
11930804 ATGTT
1 ATGTT
11930809 TTTGTAAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.70
Consensus pattern (11 bp):
ATGTTATTTTT
Found at i:11932722 original size:34 final size:34
Alignment explanation
Indices: 11932656--11932723 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
11932646 AACCACTTTG
* * *
11932656 GGTTTTAGTTGAGCCTGTGAAAAACTAGTGTAAA
1 GGTTTTAGCTGAGCCTGCGAAAAACCAGTGTAAA
* * *
11932690 GGTTTTGGCTGAGCCTGCGAAAAGCCATTGTAAA
1 GGTTTTAGCTGAGCCTGCGAAAAACCAGTGTAAA
11932724 AGCTTGGTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.29
Consensus pattern (34 bp):
GGTTTTAGCTGAGCCTGCGAAAAACCAGTGTAAA
Found at i:11935510 original size:81 final size:80
Alignment explanation
Indices: 11935370--11935530 Score: 304
Period size: 81 Copynumber: 2.0 Consensus size: 80
11935360 CTTTGTAATA
*
11935370 GTTGTTGACTATTCTAGATATACTTGGGTATACTTCCTTGCTCATAAGAATGATGCTCTACAAGC
1 GTTGATGACTATTCTAGATATACTTGGGTATACTTCCTTGCTCATAAGAATGATGCTCTACAAGC
11935435 ATTCTTAAGTTATTG
66 ATTCTTAAGTTATTG
11935450 NGTTGATGACTATTCTAGATATACTTGGGTATACTTCCTTGCTCATAAGAATGATGCTCTACAAG
1 -GTTGATGACTATTCTAGATATACTTGGGTATACTTCCTTGCTCATAAGAATGATGCTCTACAAG
11935515 CATTCTTAAGTTATTG
65 CATTCTTAAGTTATTG
11935531 TAAGAAAGTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.39
Consensus pattern (80 bp):
GTTGATGACTATTCTAGATATACTTGGGTATACTTCCTTGCTCATAAGAATGATGCTCTACAAGC
ATTCTTAAGTTATTG
Found at i:11945456 original size:21 final size:21
Alignment explanation
Indices: 11945430--11945481 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
11945420 CATCTGTATG
11945430 AGGG-TTCTTCTCAACTGCACA
1 AGGGTTTC-TCTCAACTGCACA
*
11945451 AGGGTTTCTCTCAACTGCACG
1 AGGGTTTCTCTCAACTGCACA
11945472 AGGGTTTCTC
1 AGGGTTTCTC
11945482 ATTAAAACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (21 bp):
AGGGTTTCTCTCAACTGCACA
Found at i:11947853 original size:39 final size:39
Alignment explanation
Indices: 11947810--11947891 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
11947800 ATGCCGGTAG
* *
11947810 TGTGTAGTGTGGGATAGCACACGCCGATGATATATGCCA
1 TGTGTAGTGTGGGAGAGCACACGACGATGATATATGCCA
* * * *
11947849 TGTGTGGTGTGTGAGAGCACATGATGATGATATATGCCA
1 TGTGTAGTGTGGGAGAGCACACGACGATGATATATGCCA
11947888 TGTG
1 TGTG
11947892 CGGTCTGGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.29
Consensus pattern (39 bp):
TGTGTAGTGTGGGAGAGCACACGACGATGATATATGCCA
Found at i:11947908 original size:39 final size:39
Alignment explanation
Indices: 11947835--11947948 Score: 137
Period size: 39 Copynumber: 3.0 Consensus size: 39
11947825 AGCACACGCC
* *
11947835 GATGATATATGCCATGTGTGGTGTGTGAGA-GCACATGAT
1 GATGATATATGCCATGTGTGGTGTGGGA-ATGCACATGAG
* *
11947874 GATGATATATGCCATGTGCGGTCTGGGAATGCACATGAG
1 GATGATATATGCCATGTGTGGTGTGGGAATGCACATGAG
* *
11947913 GAT-AT-TA-GCTATGTGTGGTGTGGGAGTGCACATGAG
1 GATGATATATGCCATGTGTGGTGTGGGAATGCACATGAG
11947949 CTGAGTTGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
36 25 0.38
37 2 0.03
38 3 0.05
39 36 0.55
ACGTcount: A:0.25, C:0.11, G:0.35, T:0.29
Consensus pattern (39 bp):
GATGATATATGCCATGTGTGGTGTGGGAATGCACATGAG
Found at i:11958214 original size:39 final size:40
Alignment explanation
Indices: 11958160--11958252 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 40
11958150 CGAGACTCAA
* * *
11958160 TCTCGCTGCAGCGAAATTTCTACCCAG-AAACAGAATGTT
1 TCTCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTT
11958199 TCTCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTT
1 TCTCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTT
*
11958239 TCTCACTGCAGCGA
1 TCTCGCTGCAGCGA
11958253 GAAGCTACAG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 25 0.51
40 24 0.49
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (40 bp):
TCTCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTT
Found at i:11959646 original size:19 final size:19
Alignment explanation
Indices: 11959622--11959659 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
11959612 GAAGAAGACC
*
11959622 AGCTGCTGGAAATTCAAGA
1 AGCTGCTAGAAATTCAAGA
11959641 AGCTGCTAGAAATTCAAGA
1 AGCTGCTAGAAATTCAAGA
11959660 TATTTATAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (19 bp):
AGCTGCTAGAAATTCAAGA
Found at i:11973136 original size:43 final size:43
Alignment explanation
Indices: 11973075--11973170 Score: 165
Period size: 43 Copynumber: 2.2 Consensus size: 43
11973065 NNNNNNNNNN
* *
11973075 GGGTCATCATCAGCTCATGTGCACTCCCACACCGCACATAGCT
1 GGGTCATCATCAGCTCATGTACACTCCCACACCACACATAGCT
*
11973118 GGGTCATCATCAGCTCATGTACACTCCTACACCACACATAGCT
1 GGGTCATCATCAGCTCATGTACACTCCCACACCACACATAGCT
11973161 GGGTCATCAT
1 GGGTCATCAT
11973171 TATTACACAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (43 bp):
GGGTCATCATCAGCTCATGTACACTCCCACACCACACATAGCT
Found at i:11978221 original size:73 final size:72
Alignment explanation
Indices: 11978059--11978455 Score: 339
Period size: 73 Copynumber: 5.4 Consensus size: 72
11978049 TATTGAGTCG
* * * * ** * * *
11978059 ACTAAGAAGTATCGTTAGTCAACTAAGAGCTTGCTACCAGAAATTTGGATT-ACGAGACAGAAAG
1 ACTAA-AAGTATTGTTAGTCAACCAAGAGCTTACTGCCA-AAAACTGGGTTCA-GAGACAGAGAC
* *
11978123 TACTTAATCG
63 AACTTAATCA
* **
11978133 ACTAAGAAGCATTGTTAGTCAACCAAGAGCTTGTTGCCAAAAACTGGGTTCAGAGACAGAGACAA
1 ACTAA-AAGTATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAGAGACAGAGACAA
*
11978198 CTTAATCC
65 CTTAATCA
* * * * * * *
11978206 ACTAAAAGGTTTTGTTAGTCGACTAAGAGCTTACTGCCAAAAATTTGGATT-ACGAGACAGAAAG
1 ACTAAAA-GTATTGTTAGTCAACCAAGAGCTTACTGCCAAAAA-CTGGGTTCA-GAGACAGAGAC
*
11978270 AACTTAATCG
63 AACTTAATCA
* * * *
11978280 ACTAACAAGCATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTTGGTTCAAAGACAGAGACGA
1 ACTAA-AAGTATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAGAGACAGAGACAA
11978345 CTTAATCA
65 CTTAATCA
* * * * * * * *
11978353 ACTAAAAAGTATTATTAGTCGACTAAGAGCTTATTGCTAGAAATTGGGTTCAGAGACAAAGACAA
1 ACT-AAAAGTATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAGAGACAGAGACAA
11978418 CTTAATCA
65 CTTAATCA
* * * *
11978426 ACTAAGAAGCATAGTTAGTCGACTAAGAGC
1 ACTAA-AAGTATTGTTAGTCAACCAAGAGC
11978456 ATTCTATTTA
Statistics
Matches: 265, Mismatches: 50, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
72 4 0.02
73 162 0.61
74 97 0.37
75 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (72 bp):
ACTAAAAGTATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAGAGACAGAGACAAC
TTAATCA
Found at i:11978299 original size:147 final size:147
Alignment explanation
Indices: 11978059--11978455 Score: 530
Period size: 147 Copynumber: 2.7 Consensus size: 147
11978049 TATTGAGTCG
* * * * * *
11978059 ACTAAGAAGTATCGTTAGTCAACTAAGAGCTTGCTACCAGAAATTTGGATTACGAGACAGAAAGT
1 ACTAAAAAGTATTGTTAGTCGACTAAGAGCTTACTGCCAGAAATTTGGATTACGAGACAGAAAGA
** *
11978124 ACTTAATCGACTAAGAAGCATTGTTAGTCAACCAAGAGCTTGTTGCCAAAAACTGGGTTCAGAGA
66 ACTTAATCGACTAAGAAGCATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAAAGA
*
11978189 CAGAGACAACTTAATCC
131 CAGAGACAACTTAATCA
* * *
11978206 ACTAAAAGGTTTTGTTAGTCGACTAAGAGCTTACTGCCAAAAATTTGGATTACGAGACAGAAAGA
1 ACTAAAAAGTATTGTTAGTCGACTAAGAGCTTACTGCCAGAAATTTGGATTACGAGACAGAAAGA
* *
11978271 ACTTAATCGACTAACAAGCATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTTGGTTCAAAGA
66 ACTTAATCGACTAAGAAGCATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAAAGA
*
11978336 CAGAGACGACTTAATCA
131 CAGAGACAACTTAATCA
* * * *
11978353 ACTAAAAAGTATTATTAGTCGACTAAGAGCTTATTGCTAGAAA-TTGGGTT-CAGAGACA-AAGA
1 ACTAAAAAGTATTGTTAGTCGACTAAGAGCTTACTGCCAGAAATTTGGATTAC-GAGACAGAA-A
* * * * *
11978415 CAACTTAATCAACTAAGAAGCATAGTTAGTCGACTAAGAGC
64 GAACTTAATCGACTAAGAAGCATTGTTAGTCAACCAAGAGC
11978456 ATTCTATTTA
Statistics
Matches: 219, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
145 3 0.01
146 48 0.22
147 168 0.77
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (147 bp):
ACTAAAAAGTATTGTTAGTCGACTAAGAGCTTACTGCCAGAAATTTGGATTACGAGACAGAAAGA
ACTTAATCGACTAAGAAGCATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTGGGTTCAAAGA
CAGAGACAACTTAATCA
Found at i:11978406 original size:220 final size:221
Alignment explanation
Indices: 11978056--11978455 Score: 520
Period size: 220 Copynumber: 1.8 Consensus size: 221
11978046 GAATATTGAG
* * * * * * *
11978056 TCGACTAAGAAGTATCGTTAGTCAACTAAGAGCTTGCTACCAGAAATTTGGATTACGAGACAGAA
1 TCGACTAACAAGCATCGTTAGTCAACCAAGAGCTTACTACCAAAAACTTGGATTACAAGACAGAA
* * * *
11978121 AGTACTTAATCGACTAAGAAGCATTGTTAGTCAACCAAGAGCTTGTTGCCAAAAACTGGGTTCAG
66 AGTACTTAATCAACTAAAAAGCATTATTAGTCAACCAAGAGCTTATTGCCAAAAACTGGGTTCAG
* * ** *
11978186 AGACAGAGACAACTTAATCCACTAA-AAGGTTTTGTTAGTCGACTAAGAGCTTACTGCCAAAAAT
131 AGACAAAGACAACTTAATCAACTAAGAA-GCATAGTTAGTCGACTAAGAGCTTACTGCCAAAAAT
11978250 TTGGATTACGAGACAGAAAGAACTTAA
195 TTGGATTACGAGACAGAAAGAACTTAA
* *
11978277 TCGACTAACAAGCATTGTTAGTCAACCAAGAGCTTACTGCCAAAAACTTGG-TT-CAAAGACAGA
1 TCGACTAACAAGCATCGTTAGTCAACCAAGAGCTTACTACCAAAAACTTGGATTAC-AAGACAGA
* * * * * * *
11978340 GACG-ACTTAATCAACTAAAAAGTATTATTAGTCGACTAAGAGCTTATTGCTAGAAATTGGGTTC
65 -AAGTACTTAATCAACTAAAAAGCATTATTAGTCAACCAAGAGCTTATTGCCAAAAACTGGGTTC
11978404 AGAGACAAAGACAACTTAATCAACTAAGAAGCATAGTTAGTCGACTAAGAGC
129 AGAGACAAAGACAACTTAATCAACTAAGAAGCATAGTTAGTCGACTAAGAGC
11978456 ATTCTATTTA
Statistics
Matches: 151, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
219 1 0.01
220 103 0.68
221 47 0.31
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (221 bp):
TCGACTAACAAGCATCGTTAGTCAACCAAGAGCTTACTACCAAAAACTTGGATTACAAGACAGAA
AGTACTTAATCAACTAAAAAGCATTATTAGTCAACCAAGAGCTTATTGCCAAAAACTGGGTTCAG
AGACAAAGACAACTTAATCAACTAAGAAGCATAGTTAGTCGACTAAGAGCTTACTGCCAAAAATT
TGGATTACGAGACAGAAAGAACTTAA
Found at i:11985704 original size:18 final size:19
Alignment explanation
Indices: 11985665--11985708 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
11985655 TTTTTTTTTG
**
11985665 AAATTTTTTTTTAAATTTA
1 AAATTTTTTTTTAAATAAA
11985684 AAATTTTTTTTTAAA-AAA
1 AAATTTTTTTTTAAATAAA
11985702 AAATTTT
1 AAATTTT
11985709 ATGAACTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AAATTTTTTTTTAAATAAA
Found at i:11987184 original size:21 final size:21
Alignment explanation
Indices: 11987133--11987200 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
11987123 TTGAATGGAG
* * *
11987133 GCATCAGTCCTTATCATAAAT
1 GCATCAGTCTTTGTCATGAAT
*
11987154 GCATCAGTCTTTGTTATGAAT
1 GCATCAGTCTTTGTCATGAAT
11987175 GCATCAGTCTTTGTCATGAATT
1 GCATCAGTCTTTGTCATGAA-T
11987197 GCAT
1 GCAT
11987201 GAACATATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 36 0.88
22 5 0.12
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (21 bp):
GCATCAGTCTTTGTCATGAAT
Found at i:11991739 original size:35 final size:35
Alignment explanation
Indices: 11991695--11991819 Score: 123
Period size: 35 Copynumber: 3.7 Consensus size: 35
11991685 GTTAGTTTTG
* *
11991695 GGTTTTGGTTGATCCGATGAAAAACCATTGTTAAA
1 GGTTGTGGTTGAGCCGATGAAAAACCATTGTTAAA
** * *
11991730 GGTTGTGGTTGAGCCTTTGAAAAGCCATT-TT--G
1 GGTTGTGGTTGAGCCGATGAAAAACCATTGTTAAA
* *
11991762 GGTTTTGGTTGATCCTG-TGAAAAACCATTGTTAAA
1 GGTTGTGGTTGAGCC-GATGAAAAACCATTGTTAAA
* *
11991797 GGTTGTGGCTGAGCCTATGAAAA
1 GGTTGTGGTTGAGCCGATGAAAA
11991820 GCATAGTAAA
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
32 24 0.34
33 2 0.03
34 2 0.03
35 42 0.60
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.34
Consensus pattern (35 bp):
GGTTGTGGTTGAGCCGATGAAAAACCATTGTTAAA
Found at i:11991767 original size:67 final size:67
Alignment explanation
Indices: 11991690--11991821 Score: 230
Period size: 67 Copynumber: 2.0 Consensus size: 67
11991680 GAAAAGTTAG
* *
11991690 TTTTGGGTTTTGGTTGATCC-GATGAAAAACCATTGTTAAAGGTTGTGGTTGAGCCTTTGAAAAG
1 TTTTGGGTTTTGGTTGATCCTG-TGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAG
11991754 CCA
65 CCA
11991757 TTTTGGGTTTTGGTTGATCCTGTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAGC
1 TTTTGGGTTTTGGTTGATCCTGTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAGC
11991822 ATAGTAAAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
67 61 0.98
68 1 0.02
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (67 bp):
TTTTGGGTTTTGGTTGATCCTGTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAGC
CA
Found at i:11991783 original size:32 final size:32
Alignment explanation
Indices: 11991690--11991790 Score: 114
Period size: 32 Copynumber: 3.1 Consensus size: 32
11991680 GAAAAGTTAG
11991690 TTTTGGGTTTTGGTTGATCC-GATGAAAAACCA
1 TTTTGGGTTTTGGTTGATCCTG-TGAAAAACCA
* * * * *
11991722 TTGTTAAAGGTTGTGGTTGAGCCTTTGAAAAGCCA
1 TT-TT--GGGTTTTGGTTGATCCTGTGAAAAACCA
11991757 TTTTGGGTTTTGGTTGATCCTGTGAAAAACCA
1 TTTTGGGTTTTGGTTGATCCTGTGAAAAACCA
11991789 TT
1 TT
11991791 GTTAAAGGTT
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
32 27 0.49
33 2 0.04
34 2 0.04
35 24 0.44
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.39
Consensus pattern (32 bp):
TTTTGGGTTTTGGTTGATCCTGTGAAAAACCA
Found at i:11991837 original size:67 final size:67
Alignment explanation
Indices: 11991699--11991837 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
11991689 GTTTTGGGTT
* * ****
11991699 TTGGTTGATCCGATGAAAAACCATTGTTAAAGGTTGTGGTTGAGCCTTTGAAAAGCCATTTTGGG
1 TTGGTTGATCCGATGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAGCCATTAAAAG
*
11991764 TT
66 TC
11991766 TTGGTTGATCCTG-TGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAG-CATAGTAA
1 TTGGTTGATCC-GATGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAGCCAT--TAA
11991829 AAG-C
63 AAGTC
11991833 TTGGT
1 TTGGT
11991838 GGAAGCTTGG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
66 3 0.05
67 56 0.90
68 3 0.05
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (67 bp):
TTGGTTGATCCGATGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTATGAAAAGCCATTAAAAG
TC
Found at i:11994606 original size:54 final size:54
Alignment explanation
Indices: 11994524--11994777 Score: 346
Period size: 54 Copynumber: 4.7 Consensus size: 54
11994514 TCAAGATTCA
* *
11994524 TCATGTGCATCCCACCACATTGTGCACATAGCCGGACATCCCATCTCACCGAGC
1 TCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCCCATCTCACCCAGC
* * ** **
11994578 TCATGAGCATCTCACCACATCGTGCACATAATCGGACATCCCATCTTGCCCAGC
1 TCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCCCATCTCACCCAGC
* * * * *
11994632 TCATGTGCATCCAACCACATCATGCACATAGCCGGACATTCCATCTCACCTAGT
1 TCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCCCATCTCACCCAGC
* * *
11994686 TCATGTGCATCCCACCACATTGTGCATATAGCCGGACATCCCATCTCACCCAAC
1 TCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCCCATCTCACCCAGC
* *
11994740 TCATGTGCATCCCACCATATCGTGCACATAGCCAGACA
1 TCATGTGCATCCCACCACATCGTGCACATAGCCGGACA
11994778 GTATCACCAT
Statistics
Matches: 169, Mismatches: 31, Indels: 0
0.85 0.16 0.00
Matches are distributed among these distances:
54 169 1.00
ACGTcount: A:0.26, C:0.37, G:0.15, T:0.22
Consensus pattern (54 bp):
TCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCCCATCTCACCCAGC
Found at i:11999518 original size:42 final size:42
Alignment explanation
Indices: 11999466--11999675 Score: 321
Period size: 42 Copynumber: 5.0 Consensus size: 42
11999456 TCATCTCACA
* * * *
11999466 AGCAACGGCTTATGCGTACTCCCACTCGCATATAGCCGGGTC
1 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTC
* *
11999508 AGCAATGGCTTATGTGCACTCCCACTCACACATAGCCAGGTC
1 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTC
*
11999550 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCAGGTC
1 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTC
*
11999592 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGAGTC
1 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTC
* * *
11999634 AGCAACGGTTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTC
11999676 CACATCAACA
Statistics
Matches: 155, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 155 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (42 bp):
AGCAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTC
Found at i:12001152 original size:3 final size:3
Alignment explanation
Indices: 12001144--12001202 Score: 52
Period size: 3 Copynumber: 20.7 Consensus size: 3
12001134 TGTATATACC
* * * * *
12001144 CAT CAT CAT CAT CAT C-T CAC CAA C-C CAT CAT CAT CAT CAC CAG C-T
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
12001189 CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CA
12001203 CCAGCTCATG
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
2 4 0.09
3 42 0.91
ACGTcount: A:0.32, C:0.41, G:0.02, T:0.25
Consensus pattern (3 bp):
CAT
Found at i:12001206 original size:20 final size:20
Alignment explanation
Indices: 12001149--12001211 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
12001139 ATACCCATCA
*
12001149 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
*
12001168 CCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
12001188 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
12001208 TCAT
1 TCAT
12001212 GCGCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.30, C:0.41, G:0.03, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:12018391 original size:43 final size:42
Alignment explanation
Indices: 12018343--12018494 Score: 214
Period size: 43 Copynumber: 3.5 Consensus size: 42
12018333 TCACCAGCTC
*
12018343 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCATCGGGTT
1 ATGCGCACTCCCTACTCGCACAT-ACTGGGTCATCATCGGGTT
* *
12018386 ATGCGCACTCCCTACTCGCACATAACCGAGTCATCATCGGGTT
1 ATGCGCACTCCCTACTCGCACAT-ACTGGGTCATCATCGGGTT
* * *
12018429 ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATACT-GGGTCATCATCGGGTT
*
12018472 ATGCGCACTCCCTACTCACACAT
1 ATGCGCACTCCCTACTCGCACAT
12018495 TGCCGAGTCA
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 1 0.01
43 97 0.99
ACGTcount: A:0.20, C:0.36, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCGCACTCCCTACTCGCACATACTGGGTCATCATCGGGTT
Found at i:12018475 original size:86 final size:86
Alignment explanation
Indices: 12018343--12018504 Score: 245
Period size: 86 Copynumber: 1.9 Consensus size: 86
12018333 TCACCAGCTC
* * *
12018343 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCATCGGGTTATGCGCACTCCCTACTCGCACA
1 ATGCGCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGCGCACTCCCTACTCACACA
12018408 TAACCGAGTCATCATCGGGTT
66 TAACCGAGTCATCATCGGGTT
* *
12018429 ATGCGCACTCCCTACTCGCACATA-ATCGGGTCATCCTCGGCTTATGCGCACTCCCTACTCACAC
1 ATGCGCACTCCCTACTCGCACATAGCT-GGGTCATCATCGGCTTATGCGCACTCCCTACTCACAC
**
12018493 ATTGCCGAGTCA
65 ATAACCGAGTCA
12018505 ACATAATTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
85 1 0.01
86 67 0.99
ACGTcount: A:0.20, C:0.36, G:0.20, T:0.24
Consensus pattern (86 bp):
ATGCGCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGCGCACTCCCTACTCACACA
TAACCGAGTCATCATCGGGTT
Found at i:12027939 original size:28 final size:28
Alignment explanation
Indices: 12027885--12027939 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
12027875 GACAAGTGCT
* *
12027885 GGGGCGAAAAATTTACCAATTTGCCCCC
1 GGGGCGAAAAAATTACCAATTTCCCCCC
* * *
12027913 GGGGTGAAAAAATTACGATTTTCCCCC
1 GGGGCGAAAAAATTACCAATTTCCCCC
12027940 TATACTCTGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (28 bp):
GGGGCGAAAAAATTACCAATTTCCCCCC
Found at i:12031333 original size:43 final size:43
Alignment explanation
Indices: 12031254--12031364 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
12031244 ATTGACTCGA
* * ** *
12031254 CTATGTGTGAGTAGGGAGTGCGCGTAAGTCGATGATGACCCGG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCCAG
* * * *
12031297 TTATGTGCGAGTAGGGAGTACGCATAACCCGGTGATGACCTAG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCCAG
*
12031340 CCATGTGCGAGTAGGGAGTGCGCAT
1 CTATGTGCGAGTAGGGAGTGCGCAT
12031365 GAGTTGGGGA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCCAG
Found at i:12031402 original size:23 final size:23
Alignment explanation
Indices: 12031373--12031421 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
12031363 ATGAGTTGGG
*
12031373 GATGATGGGATGATGTGCATGAT
1 GATGATGGGATGATGTACATGAT
*
12031396 GATGATGGGATGGTGTACATGAT
1 GATGATGGGATGATGTACATGAT
12031419 GAT
1 GAT
12031422 TGATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.04, G:0.39, T:0.31
Consensus pattern (23 bp):
GATGATGGGATGATGTACATGAT
Found at i:12031431 original size:2 final size:2
Alignment explanation
Indices: 12031424--12031461 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
12031414 ATGATGATTG
*
12031424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12031462 GGTATATGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:12033589 original size:10 final size:10
Alignment explanation
Indices: 12033576--12033609 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
12033566 GGAAGAAAAA
12033576 AGAAGCTGCT
1 AGAAGCTGCT
*
12033586 AGAAGCTGGT
1 AGAAGCTGCT
*
12033596 GGAAGCTGCT
1 AGAAGCTGCT
12033606 AGAA
1 AGAA
12033610 AATGATATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.32, C:0.15, G:0.35, T:0.18
Consensus pattern (10 bp):
AGAAGCTGCT
Found at i:12037235 original size:39 final size:39
Alignment explanation
Indices: 12037146--12037279 Score: 159
Period size: 39 Copynumber: 3.5 Consensus size: 39
12037136 CTCAACTTAG
* *
12037146 ATCATGTGCACTCCAACACCGCACATAGC-TA-AT-ATC
1 ATCATGTGCACTCCCACACCGCACATGGCATAGATCATC
*
12037182 CTCATGTGCACTCCCACACCGCACATGGCATAGATCATC
1 ATCATGTGCACTCCCACACCGCACATGGCATAGATCATC
* *
12037221 ATCATGTGCTCTCCCACACAGCACATGGCATATG-TCATC
1 ATCATGTGCACTCCCACACCGCACATGGCATA-GATCATC
* * *
12037260 AGCGTGTGCTCTCCCACACC
1 ATCATGTGCACTCCCACACC
12037280 ATACATTACC
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
36 26 0.31
37 2 0.02
38 2 0.02
39 54 0.64
40 1 0.01
ACGTcount: A:0.26, C:0.37, G:0.15, T:0.22
Consensus pattern (39 bp):
ATCATGTGCACTCCCACACCGCACATGGCATAGATCATC
Done.