Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 34 of 59
Found at i:12432247 original size:43 final size:43
Alignment explanation
Indices: 12432195--12432304 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
12432185 TCACCAACTA
* ** * * *
12432195 ATGCGCACTCCCTACTCACACATGGCTAGGTTATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATC-CTCGGCTT
* *
12432238 ATGCTCACTCCGTACTCGCACATAACCAGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATCCTCGGCTT
12432281 ATGCGCACTCCCTACTCGCACATA
1 ATGCGCACTCCCTACTCGCACATA
12432305 GTCAAGTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 1 0.02
43 55 0.98
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCAGGTCATCCTCGGCTT
Found at i:12436818 original size:21 final size:21
Alignment explanation
Indices: 12436794--12436860 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
12436784 AGACATTTCA
* *
12436794 CAAAGTCTTGATACTTGGATT
1 CAAAATCTTGATACCTGGATT
* * *
12436815 CAAAATTTTGATACGTGGTTT
1 CAAAATCTTGATACCTGGATT
*
12436836 CAAAATCTTGATACCTCGATT
1 CAAAATCTTGATACCTGGATT
12436857 -AAAA
1 CAAAA
12436861 GTCCTGAAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
20 4 0.11
21 34 0.89
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (21 bp):
CAAAATCTTGATACCTGGATT
Found at i:12437500 original size:3 final size:3
Alignment explanation
Indices: 12437492--12437523 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
12437482 CATGTGAGGA
12437492 AAT AAT AAT AA- AAT AAT AAT AA- AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
12437524 TTTTTATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:12437507 original size:11 final size:11
Alignment explanation
Indices: 12437491--12437523 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
12437481 ACATGTGAGG
12437491 AAATAATAATA
1 AAATAATAATA
12437502 AAATAATAATA
1 AAATAATAATA
12437513 AAATAATAATA
1 AAATAATAATA
12437524 TTTTTATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAATAATA
Found at i:12437508 original size:8 final size:9
Alignment explanation
Indices: 12437492--12437523 Score: 50
Period size: 8 Copynumber: 3.8 Consensus size: 9
12437482 CATGTGAGGA
12437492 AATAATAAT
1 AATAATAAT
12437501 AA-AATAAT
1 AATAATAAT
12437509 AATAA-AAT
1 AATAATAAT
12437517 AATAATA
1 AATAATA
12437524 TTTTTATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AATAATAAT
Found at i:12437641 original size:18 final size:19
Alignment explanation
Indices: 12437618--12437657 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
12437608 CTAGTGGAGA
*
12437618 ATTTTA-GAATAAAATAAT
1 ATTTTATGAATAAAACAAT
12437636 ATTTTATGAATAAAACAAT
1 ATTTTATGAATAAAACAAT
12437655 ATT
1 ATT
12437658 AAGATATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.40
Consensus pattern (19 bp):
ATTTTATGAATAAAACAAT
Found at i:12438137 original size:19 final size:21
Alignment explanation
Indices: 12438111--12438156 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
12438101 TAAAAATCAA
12438111 TCTCTTTT-CTTTTTCTTTCT
1 TCTCTTTTCCTTTTTCTTTCT
12438131 T-TCTTTTCCTTTTTCTTTCT
1 TCTCTTTTCCTTTTTCTTTCT
12438151 TCTCTT
1 TCTCTT
12438157 GATTCTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.25
20 14 0.58
21 4 0.17
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (21 bp):
TCTCTTTTCCTTTTTCTTTCT
Found at i:12438270 original size:12 final size:13
Alignment explanation
Indices: 12438253--12438286 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
12438243 AAATAAAATT
12438253 TTCTTTTTTTT-C
1 TTCTTTTTTTTCC
12438265 TTCTTTTTTTTCC
1 TTCTTTTTTTTCC
12438278 TTCATTTTT
1 TTC-TTTTT
12438287 CCATTATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.55
13 4 0.20
14 5 0.25
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTTTTTTCC
Found at i:12438837 original size:28 final size:28
Alignment explanation
Indices: 12438796--12438909 Score: 77
Period size: 28 Copynumber: 4.1 Consensus size: 28
12438786 TAATAATGTA
*
12438796 AAGGTTTTGCTTGATCCTTAAAAAGGCT
1 AAGGTTCTGCTTGATCCTTAAAAAGGCT
* * * *
12438824 AAGGTTCTGTTTGATCTTTGAAAAGGTT
1 AAGGTTCTGCTTGATCCTTAAAAAGGCT
* * * * **
12438852 GAA-GTTTTTCATAATCCTTCGAAAGGCT
1 -AAGGTTCTGCTTGATCCTTAAAAAGGCT
* * * *
12438880 AAGGTTTTGCCTAATCCTTGAAAAGGCT
1 AAGGTTCTGCTTGATCCTTAAAAAGGCT
12438908 AA
1 AA
12438910 AGTTATGTTT
Statistics
Matches: 66, Mismatches: 18, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
27 2 0.03
28 62 0.94
29 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (28 bp):
AAGGTTCTGCTTGATCCTTAAAAAGGCT
Found at i:12438963 original size:33 final size:34
Alignment explanation
Indices: 12438926--12439038 Score: 147
Period size: 34 Copynumber: 3.4 Consensus size: 34
12438916 GTTTGCTCCT
12438926 TGAGAAGGTAGTATGTGGGTTGTGCTT-ATCCCA
1 TGAGAAGGTAGTATGTGGGTTGTGCTTGATCCCA
* * *
12438959 TGAGAAAGCAGTCTGTGGGTTGTGCTTGATCCCA
1 TGAGAAGGTAGTATGTGGGTTGTGCTTGATCCCA
* * * *
12438993 TGAGAAGGTAGTTTGTGGGTTATGCTTGATCTCG
1 TGAGAAGGTAGTATGTGGGTTGTGCTTGATCCCA
*
12439027 TGAAAAGGTAGT
1 TGAGAAGGTAGT
12439039 GTGCCACATC
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
33 24 0.35
34 45 0.65
ACGTcount: A:0.22, C:0.12, G:0.34, T:0.33
Consensus pattern (34 bp):
TGAGAAGGTAGTATGTGGGTTGTGCTTGATCCCA
Found at i:12440533 original size:68 final size:67
Alignment explanation
Indices: 12440421--12440586 Score: 183
Period size: 68 Copynumber: 2.4 Consensus size: 67
12440411 CATCTCATAT
* *
12440421 AGTATATGGAAAAACACATCATATACATAATCTCATGCATTCATCATGCCTTCTCAATCATT-TC
1 AGTATATGG-AATATACATCATATACATAATCTCATGCATTCATCATGCCTTCTCAATC-TTCTC
12440485 ATGC
64 ATGC
* * * * *
12440489 AGTATATGGAATGTACATCATATACTTAATTTTATAGCCA-TCATCATGCTTTCTCAATCTTCTC
1 AGTATATGGAATATACATCATATACATAATCTCAT-G-CATTCATCATGCCTTCTCAATCTTCTC
*
12440553 ATGT
64 ATGC
* * *
12440557 ATTATATGGCATATACACCATATACATAAT
1 AGTATATGGAATATACATCATATACATAAT
12440587 GCTGATCTTA
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
67 22 0.27
68 58 0.71
69 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (67 bp):
AGTATATGGAATATACATCATATACATAATCTCATGCATTCATCATGCCTTCTCAATCTTCTCAT
GC
Found at i:12443276 original size:16 final size:16
Alignment explanation
Indices: 12443255--12443289 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
12443245 AAATTTAGAC
*
12443255 TTTGATTCTTTTGTAT
1 TTTGATTCTTTTATAT
*
12443271 TTTGATTTTTTTATAT
1 TTTGATTCTTTTATAT
12443287 TTT
1 TTT
12443290 TATTGAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTGATTCTTTTATAT
Found at i:12443410 original size:21 final size:21
Alignment explanation
Indices: 12443386--12443441 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
12443376 TTTGTTTCAA
12443386 ATGTATCGATACATGTTCATG
1 ATGTATCGATACATGTTCATG
12443407 ATGTATCGATACATGTTCATG
1 ATGTATCGATACATGTTCATG
12443428 ATGTATCGATACAT
1 ATGTATCGATACAT
12443442 ATGGTCATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (21 bp):
ATGTATCGATACATGTTCATG
Found at i:12447881 original size:20 final size:20
Alignment explanation
Indices: 12447840--12447883 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
12447830 TCTAAACCTT
* *
12447840 AAATCATACTTCAATTACTC
1 AAATCATACTCCAATAACTC
*
12447860 AAATCATACTCCAATAAGTC
1 AAATCATACTCCAATAACTC
12447880 AAAT
1 AAAT
12447884 GGGGCCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATCATACTCCAATAACTC
Found at i:12449438 original size:21 final size:21
Alignment explanation
Indices: 12449410--12449459 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
12449400 TCCTTAACTT
12449410 TTTC-ATAGCATATATAAACA
1 TTTCTATAGCATATATAAACA
12449430 TTTCTATAGCATATATAAACA
1 TTTCTATAGCATATATAAACA
*
12449451 TCTCTATAG
1 TTTCTATAG
12449460 TGTATAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (21 bp):
TTTCTATAGCATATATAAACA
Found at i:12449625 original size:29 final size:33
Alignment explanation
Indices: 12449529--12449644 Score: 124
Period size: 35 Copynumber: 3.3 Consensus size: 33
12449519 ATGCACAAGG
* ***
12449529 CAATATCATCATGTGCACTCCCTACACGCACAAGG
1 CAATATCATCATGTGCACT-CCT-CACACACATTT
12449564 CAATATCATCATGTGCACTCCTTACACACACATTT
1 CAATATCATCATGTGCACTCC-T-CACACACATTT
*
12449599 CAATATCATCATGTGCACTCCCCACATGCACATTT
1 CAATATCATCATGTGCACTCCTCACA--CACATTT
*
12449634 CAATACCATCA
1 CAATATCATCA
12449645 CACGCACTCC
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
33 4 0.06
34 2 0.03
35 66 0.92
ACGTcount: A:0.32, C:0.34, G:0.09, T:0.26
Consensus pattern (33 bp):
CAATATCATCATGTGCACTCCTCACACACATTT
Found at i:12449644 original size:35 final size:35
Alignment explanation
Indices: 12449505--12449630 Score: 180
Period size: 35 Copynumber: 3.6 Consensus size: 35
12449495 CATCAACTCT
*
12449505 TGTGCACTCCCTACATGCACAAGGCAATATCATCA
1 TGTGCACTCCCTACACGCACAAGGCAATATCATCA
12449540 TGTGCACTCCCTACACGCACAAGGCAATATCATCA
1 TGTGCACTCCCTACACGCACAAGGCAATATCATCA
* * ***
12449575 TGTGCACTCCTTACACACACATTTCAATATCATCA
1 TGTGCACTCCCTACACGCACAAGGCAATATCATCA
* *
12449610 TGTGCACTCCCCACATGCACA
1 TGTGCACTCCCTACACGCACA
12449631 TTTCAATACC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 81 1.00
ACGTcount: A:0.30, C:0.34, G:0.12, T:0.24
Consensus pattern (35 bp):
TGTGCACTCCCTACACGCACAAGGCAATATCATCA
Found at i:12450414 original size:19 final size:19
Alignment explanation
Indices: 12450390--12450426 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
12450380 TAAGAATAGA
12450390 AAGGAAAGGAAAA-GAAAAC
1 AAGGAAA-GAAAATGAAAAC
12450409 AAGGAAAGAAAATGAAAA
1 AAGGAAAGAAAATGAAAA
12450427 AACTTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.70, C:0.03, G:0.24, T:0.03
Consensus pattern (19 bp):
AAGGAAAGAAAATGAAAAC
Found at i:12462108 original size:46 final size:48
Alignment explanation
Indices: 12462057--12462161 Score: 147
Period size: 49 Copynumber: 2.1 Consensus size: 48
12462047 TAATATTGTG
* *
12462057 TGATGATATTGGCTCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGA
1 TGATGATA-TGACTCGGCTATGTGCAAGTAGGGAGTGCACATAAGCCGA
* * *
12462106 TGATGATGATGACTCGGCTATGTTCAAGTAGGGAGTGCGCATAAGCTGA
1 TGATGAT-ATGACTCGGCTATGTGCAAGTAGGGAGTGCACATAAGCCGA
12462155 TGATGAT
1 TGATGAT
12462162 GACGACCCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
49 49 0.98
50 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (48 bp):
TGATGATATGACTCGGCTATGTGCAAGTAGGGAGTGCACATAAGCCGA
Found at i:12462111 original size:49 final size:49
Alignment explanation
Indices: 12462069--12462163 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
12462059 ATGATATTGG
*
12462069 CTCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGATGATGATGA
1 CTCGGCTATGTGCAAGTAGGGAGTGCACATAAGCCGATGATGATGATGA
* * *
12462118 CTCGGCTATGTTCAAGTAGGGAGTGCGCATAAGCTGATGATGATGA
1 CTCGGCTATGTGCAAGTAGGGAGTGCACATAAGCCGATGATGATGA
12462164 CGACCCAGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (49 bp):
CTCGGCTATGTGCAAGTAGGGAGTGCACATAAGCCGATGATGATGATGA
Found at i:12466854 original size:54 final size:53
Alignment explanation
Indices: 12466772--12466985 Score: 293
Period size: 54 Copynumber: 4.0 Consensus size: 53
12466762 AACAATCATT
* * * *
12466772 CCATCTCACCTAGCTCATGTGCATCCCACCACATCCTGCACATAGTCGAACATC
1 CCATCTCACCCA-CTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
* *
12466826 CCATCTCACCCGACTTATGTGCATCCCACCATATCGTGCACATAGCCGGACATC
1 CCATCTCACCC-ACTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
* *
12466880 CCATCTCACTCAACTCATGTGCATCCCACCACATCGTGCACATAACCGGACATC
1 CCATCTCAC-CCACTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
* * *
12466934 CCATTTCACCCAGCTCATGTGCATCCCACCACATTGTGCACATAGCTGGACA
1 CCATCTCACCCA-CTCATGTGCATCCCACCACATCGTGCACATAGCCGGACA
12466986 ATATCACCAT
Statistics
Matches: 142, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
53 2 0.01
54 138 0.97
55 2 0.01
ACGTcount: A:0.26, C:0.39, G:0.13, T:0.22
Consensus pattern (53 bp):
CCATCTCACCCACTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
Found at i:12477109 original size:54 final size:54
Alignment explanation
Indices: 12477031--12477136 Score: 176
Period size: 54 Copynumber: 2.0 Consensus size: 54
12477021 AACAATCATT
* *
12477031 CCATCCCACCCAACTCATGTGCATCCCACCATATCGTGCACATAGCTGGACATC
1 CCATCCCACCCAACTCATGTGCATCCCACCACATCATGCACATAGCTGGACATC
* *
12477085 CCATCTCACCCAACTCATGTGCATCCCACCACATCATGCACATAGTTGGACA
1 CCATCCCACCCAACTCATGTGCATCCCACCACATCATGCACATAGCTGGACA
12477137 GTATCACCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.27, C:0.40, G:0.12, T:0.21
Consensus pattern (54 bp):
CCATCCCACCCAACTCATGTGCATCCCACCACATCATGCACATAGCTGGACATC
Found at i:12480511 original size:81 final size:81
Alignment explanation
Indices: 12480268--12480495 Score: 332
Period size: 80 Copynumber: 2.8 Consensus size: 81
12480258 ATAGTCGGAG
* *
12480268 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCACCATGTGCTCCCCCCACATCGTGCAC
1 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
*
12480333 ATGGCATATATCATAA
66 ATGGCATATATCATCA
* * * * *
12480349 TCATCATGTGCACCCCCACATCGTGCATAACT-ACGCCATCATGTGCTCCCCCCACATCACGCAC
1 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
12480413 ATGGCATATATCATCA
66 ATGGCATATATCATCA
* * * **
12480429 TCATCGTGTGCAGCCCTACATCGCGGACAACTAATGCCATCATGTGCTTGCCCCACATCGCGCAC
1 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
12480494 AT
66 AT
12480496 CGAAAATCTC
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
80 69 0.54
81 59 0.46
ACGTcount: A:0.25, C:0.38, G:0.15, T:0.22
Consensus pattern (81 bp):
TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
ATGGCATATATCATCA
Found at i:12483126 original size:21 final size:21
Alignment explanation
Indices: 12483100--12483151 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
12483090 TGCCATATTC
*
12483100 ATAGCATATATAAACATTTCT
1 ATAGCATATATAAACATCTCT
12483121 ATAGCATATATAAACATCTCT
1 ATAGCATATATAAACATCTCT
12483142 ATAGCATATA
1 ATAGCATATA
12483152 AATATATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (21 bp):
ATAGCATATATAAACATCTCT
Found at i:12483338 original size:35 final size:35
Alignment explanation
Indices: 12483191--12483330 Score: 199
Period size: 35 Copynumber: 4.0 Consensus size: 35
12483181 CATCAGCTCT
* ***
12483191 TGTGCACTCCCTACACGCATAAGGCAATATCATCA
1 TGTGCACTCCCTACACGCACATTTCAATATCATCA
**
12483226 TGTGCACTCTTTACACGCACATTTCAATATCATCA
1 TGTGCACTCCCTACACGCACATTTCAATATCATCA
*
12483261 TGTGCACTCCCTACATGCACATTTCAATATCATCA
1 TGTGCACTCCCTACACGCACATTTCAATATCATCA
* *
12483296 TGTGCACTCCCTACACACACATTTCAATACCATCA
1 TGTGCACTCCCTACACGCACATTTCAATATCATCA
12483331 CATGCACTTC
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 93 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (35 bp):
TGTGCACTCCCTACACGCACATTTCAATATCATCA
Found at i:12485047 original size:2 final size:2
Alignment explanation
Indices: 12485040--12485069 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
12485030 TATTACATAA
12485040 AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12485070 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12485062 original size:19 final size:19
Alignment explanation
Indices: 12485030--12485069 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
12485020 ATGAACTTTC
12485030 TATTACATAAATATATATA
1 TATTACATAAATATATATA
* *
12485049 TATTATATATATATATATA
1 TATTACATAAATATATATA
12485068 TA
1 TA
12485070 GAGAGAGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTACATAAATATATATA
Found at i:12485074 original size:2 final size:2
Alignment explanation
Indices: 12485069--12485094 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12485059 ATATATATAT
12485069 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
12485095 GGAAGACAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12485203 original size:39 final size:39
Alignment explanation
Indices: 12485144--12485243 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
12485134 CTAGCTCATG
* *
12485144 TGCAACCCCCACATCATGCACATAGA-TGGAGTCATCGTC
1 TGCATCCCCCACATCATGCACATA-ACTAGAGTCATCGTC
*
12485183 TGCATCCCCCACATCATGCACATAACTAGAGTCATCGTT
1 TGCATCCCCCACATCATGCACATAACTAGAGTCATCGTC
*
12485222 TGCATCCCCCACATCGTGCACA
1 TGCATCCCCCACATCATGCACA
12485244 GCTAATACCG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
38 1 0.02
39 55 0.98
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (39 bp):
TGCATCCCCCACATCATGCACATAACTAGAGTCATCGTC
Found at i:12489047 original size:40 final size:40
Alignment explanation
Indices: 12488992--12489095 Score: 158
Period size: 38 Copynumber: 2.6 Consensus size: 40
12488982 CACCCAACTA
*
12488992 TGTGCATCCCCCCACATCGTGCACATAGCCAGAGTCATCG
1 TGTGCATCCCCCCACATCGTGCACATAGCCAGAGCCATCG
* *
12489032 TGTGCATCCCCCCACATCGTGCAC--AGTCAGTGCCATCG
1 TGTGCATCCCCCCACATCGTGCACATAGCCAGAGCCATCG
*
12489070 TGTACATCCCCCCACATCGTGCACAT
1 TGTGCATCCCCCCACATCGTGCACAT
12489096 GGGCACTATC
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
38 34 0.59
40 24 0.41
ACGTcount: A:0.21, C:0.39, G:0.18, T:0.21
Consensus pattern (40 bp):
TGTGCATCCCCCCACATCGTGCACATAGCCAGAGCCATCG
Found at i:12489087 original size:19 final size:19
Alignment explanation
Indices: 12488996--12489095 Score: 67
Period size: 19 Copynumber: 5.2 Consensus size: 19
12488986 CAACTATGTG
12488996 CATCCCCCCACATCGTGCA
1 CATCCCCCCACATCGTGCA
** ** **
12489015 CATAGCCAGAGTCATCGTGTG
1 CATCCCCCCA--CATCGTGCA
12489036 CATCCCCCCACATCGTGCA
1 CATCCCCCCACATCGTGCA
**** *
12489055 CAGTCAGTGC-CATCGTGTA
1 CA-TCCCCCCACATCGTGCA
12489074 CATCCCCCCACATCGTGCA
1 CATCCCCCCACATCGTGCA
12489093 CAT
1 CAT
12489096 GGGCACTATC
Statistics
Matches: 55, Mismatches: 22, Indels: 8
0.65 0.26 0.09
Matches are distributed among these distances:
18 3 0.05
19 36 0.65
20 3 0.05
21 13 0.24
ACGTcount: A:0.22, C:0.41, G:0.17, T:0.20
Consensus pattern (19 bp):
CATCCCCCCACATCGTGCA
Found at i:12491706 original size:27 final size:26
Alignment explanation
Indices: 12491676--12491727 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
12491666 TTTGAAGCAT
*
12491676 AGGGGTAAAATGGTAATTTTACCACCC
1 AGGGGCAAAATGGTAATTTT-CCACCC
*
12491703 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
12491728 ACCAGGACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
AGGGGCAAAATGGTAATTTTCCACCC
Found at i:12496664 original size:80 final size:80
Alignment explanation
Indices: 12496471--12496666 Score: 250
Period size: 80 Copynumber: 2.5 Consensus size: 80
12496461 GTTAAGCATA
* * * * ** *
12496471 TCATGTACACCATAGGCTAAACATGTGAGTGATTTATGAGGTTATGAAATGCATGCCATGAGATG
1 TCATATACACTATGGGCTAAGCATGTGAGTGATTTACAAGGTTATGAAATGCAAGCCATGAGATG
12496536 TACATGTTGAGATAG
66 TACATGTTGAGATAG
* * * * * *
12496551 TCATATACTCTATGGGATAAGTATTTGAGTGATTTACAAGGTTATGAAATGTAAGCCATGTGATG
1 TCATATACACTATGGGCTAAGCATGTGAGTGATTTACAAGGTTATGAAATGCAAGCCATGAGATG
*
12496616 TACGTGTTGAGATAG
66 TACATGTTGAGATAG
12496631 TCATATACACTATGGGCTAAGCATGATGA-TGATTTA
1 TCATATACACTATGGGCTAAGCATG-TGAGTGATTTA
12496667 TTGAAATGTT
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 94 0.97
81 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (80 bp):
TCATATACACTATGGGCTAAGCATGTGAGTGATTTACAAGGTTATGAAATGCAAGCCATGAGATG
TACATGTTGAGATAG
Found at i:12497333 original size:20 final size:20
Alignment explanation
Indices: 12497265--12497338 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
12497255 GTGCTATGTG
12497265 GAATGTATCGATACATTCTCA
1 GAATGTATCGATACATTC-CA
* * * **
12497286 -AAAGTATTGATAAATTTCTT
1 GAATGTATCGATACA-TTCCA
*
12497306 GCATGTATCGATACATTCCA
1 GAATGTATCGATACATTCCA
*
12497326 GAATGTATTGATA
1 GAATGTATCGATA
12497339 GAATAGTTGT
Statistics
Matches: 38, Mismatches: 13, Indels: 5
0.68 0.23 0.09
Matches are distributed among these distances:
20 25 0.66
21 13 0.34
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (20 bp):
GAATGTATCGATACATTCCA
Found at i:12498940 original size:37 final size:37
Alignment explanation
Indices: 12498891--12499046 Score: 199
Period size: 37 Copynumber: 4.2 Consensus size: 37
12498881 AATGCAATAT
* *
12498891 CATCATCATGTGTGCACTCTCTACTCGCATACT-TCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTCT-AA
* * * *
12498928 CATTATCCTGTGTGCACTCCCTACTAGCACACTCTAT
1 CATCATCATGTGTGCACTCCCTACTCGCACACTCTAA
*
12498965 CATCATCATGTGTGCACTCCCTACTCGCACACTCTAT
1 CATCATCATGTGTGCACTCCCTACTCGCACACTCTAA
* *
12499002 CATCATCATGTGTGCACTCCCTTCTCACACACT-TCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTCT-AA
12499039 CATCATCA
1 CATCATCA
12499047 CACATCATTA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
36 1 0.01
37 103 0.98
38 1 0.01
ACGTcount: A:0.24, C:0.36, G:0.10, T:0.31
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTCTAA
Found at i:12508095 original size:22 final size:22
Alignment explanation
Indices: 12508061--12508108 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
12508051 TTAGAGTGGT
* *
12508061 ATCAGAGCTTTTGGTTTTAAAG
1 ATCAAAGCCTTTGGTTTTAAAG
12508083 ATCAAAGCCTTTGGTTTTAAAG
1 ATCAAAGCCTTTGGTTTTAAAG
12508105 ATCA
1 ATCA
12508109 GAGTACAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (22 bp):
ATCAAAGCCTTTGGTTTTAAAG
Found at i:12517539 original size:15 final size:15
Alignment explanation
Indices: 12517503--12517552 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
12517493 TATTATTAAG
* *
12517503 TAAAATAAGTAAATA
1 TAAAATAAATAAAAA
* * *
12517518 TATAATATATAACAA
1 TAAAATAAATAAAAA
12517533 TAAAATAAATAAAAA
1 TAAAATAAATAAAAA
12517548 TAAAA
1 TAAAA
12517553 ATAATTTCCA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (15 bp):
TAAAATAAATAAAAA
Found at i:12520970 original size:7 final size:6
Alignment explanation
Indices: 12520956--12521046 Score: 64
Period size: 6 Copynumber: 14.5 Consensus size: 6
12520946 GGACGGTGAA
* *
12520956 AAAAAG AAGAAAG AAGAAAG AAAAAG AAAAAA AAAAAG AAAGAG NNNNAAAAA-
1 AAAAAG AA-AAAG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG ----AAAAAG
12521009 AAGAAAG AAGAAAG -AAAAG -AAAAG AAAAA- AAAAAG AAA
1 AA-AAAG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
12521047 GAGTGGGCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
5 16 0.22
6 32 0.44
7 20 0.28
10 4 0.06
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:12521009 original size:50 final size:46
Alignment explanation
Indices: 12520956--12521049 Score: 113
Period size: 50 Copynumber: 2.0 Consensus size: 46
12520946 GGACGGTGAA
*
12520956 AAAAAGAAGAAAGAAGAAAG-AAA-AAGA-AAAAAAAAAAGAAAGAG
1 AAAAA-AAGAAAGAAGAAAGAAAAGAAAAGAAAAAAAAAAGAAAGAG
12521000 NNNNAAAAAAAGAAAGAAGAAAGAAAAGAAAAGAAAAAAAAAAGAAAGAG
1 ----AAAAAAAGAAAGAAGAAAGAAAAGAAAAGAAAAAAAAAAGAAAGAG
12521050 TGGGCATGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
47 14 0.33
48 8 0.19
49 3 0.07
50 17 0.40
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.00
Consensus pattern (46 bp):
AAAAAAAGAAAGAAGAAAGAAAAGAAAAGAAAAAAAAAAGAAAGAG
Found at i:12521096 original size:26 final size:28
Alignment explanation
Indices: 12521040--12521099 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 28
12521030 AAGAAAAAAA
*
12521040 AAAGAAAGAGTGGGCATGGCCCAACAAG
1 AAAGAAAGAATGGGCATGGCCCAACAAG
12521068 AAAGAAA-AATGGGCATGG-CCAA-ATAG
1 AAAGAAAGAATGGGCATGGCCCAACA-AG
12521094 AAAGAA
1 AAAGAA
12521100 GTTGGGGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 1 0.03
26 12 0.40
27 10 0.33
28 7 0.23
ACGTcount: A:0.50, C:0.13, G:0.28, T:0.08
Consensus pattern (28 bp):
AAAGAAAGAATGGGCATGGCCCAACAAG
Found at i:12523285 original size:25 final size:25
Alignment explanation
Indices: 12523251--12523300 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
12523241 CAATGTGGCC
12523251 CAAGTTAAGTTAAGTTAAGTTAGGT
1 CAAGTTAAGTTAAGTTAAGTTAGGT
12523276 CAAGTTAAGTTAAGTTAAGTTAGGT
1 CAAGTTAAGTTAAGTTAAGTTAGGT
12523301 TAGGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (25 bp):
CAAGTTAAGTTAAGTTAAGTTAGGT
Found at i:12523306 original size:5 final size:5
Alignment explanation
Indices: 12523252--12523302 Score: 75
Period size: 5 Copynumber: 10.2 Consensus size: 5
12523242 AATGTGGCCC
* * *
12523252 AAGTT AAGTT AAGTT AAGTT AGGTC AAGTT AAGTT AAGTT AAGTT AGGTT
1 AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT
12523302 A
1 A
12523303 GGTTGAATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (5 bp):
AAGTT
Found at i:12524923 original size:16 final size:16
Alignment explanation
Indices: 12524904--12524938 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
12524894 GTATAAATCT
*
12524904 CATTTTTATTAAAAAA
1 CATTTTAATTAAAAAA
*
12524920 CATTTTAATTGAAAAA
1 CATTTTAATTAAAAAA
12524936 CAT
1 CAT
12524939 AATATTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (16 bp):
CATTTTAATTAAAAAA
Found at i:12531211 original size:19 final size:19
Alignment explanation
Indices: 12531187--12531224 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
12531177 ACTTCTAAAC
12531187 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
12531206 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
12531225 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:12534476 original size:19 final size:20
Alignment explanation
Indices: 12534454--12534494 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
12534444 ATAAGAGAAC
12534454 ATTTTTA-GAATAAAATAAT
1 ATTTTTATGAATAAAATAAT
*
12534473 A-TTTTATTAATAAAATAAT
1 ATTTTTATGAATAAAATAAT
12534492 ATT
1 ATT
12534495 AAAATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 5 0.26
19 13 0.68
20 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
ATTTTTATGAATAAAATAAT
Found at i:12535570 original size:27 final size:27
Alignment explanation
Indices: 12535526--12535585 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
12535516 AAGAAAAGAA
*
12535526 AAAGAAAGAGTGGGCATGGCCCAACAAG
1 AAAGAAAGAATGGGCATGGCCCAA-AAG
*
12535554 AAAGAAA-AATGGGCATGGCCCAATAG
1 AAAGAAAGAATGGGCATGGCCCAAAAG
12535580 AAAGAA
1 AAAGAA
12535586 GTTGGGGAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 8 0.27
27 15 0.50
28 7 0.23
ACGTcount: A:0.48, C:0.15, G:0.28, T:0.08
Consensus pattern (27 bp):
AAAGAAAGAATGGGCATGGCCCAAAAG
Found at i:12538369 original size:2 final size:2
Alignment explanation
Indices: 12538362--12538393 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
12538352 TTTACATCTA
12538362 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12538394 TCCAAATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12539209 original size:34 final size:35
Alignment explanation
Indices: 12539171--12539248 Score: 115
Period size: 34 Copynumber: 2.3 Consensus size: 35
12539161 CACAAAGCTA
12539171 TCCAATTTTCT-TGCACAAACTACCAGCAAACAGC
1 TCCAATTTTCTCTGCACAAACTACCAGCAAACAGC
* **
12539205 TCCAATTTT-TCTGCACAAATTGGCAGCAAACAGC
1 TCCAATTTTCTCTGCACAAACTACCAGCAAACAGC
12539239 TCCAATTTTC
1 TCCAATTTTC
12539249 AGCAGCAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
33 1 0.03
34 38 0.97
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.28
Consensus pattern (35 bp):
TCCAATTTTCTCTGCACAAACTACCAGCAAACAGC
Found at i:12539589 original size:17 final size:20
Alignment explanation
Indices: 12539567--12539604 Score: 55
Period size: 17 Copynumber: 2.0 Consensus size: 20
12539557 ACTTCCTCTC
12539567 CTTTTTC-TTT-TTT-ATCT
1 CTTTTTCATTTCTTTCATCT
12539584 CTTTTTCATTTCTTTCATCT
1 CTTTTTCATTTCTTTCATCT
12539604 C
1 C
12539605 ACATGGCCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 3 0.17
20 5 0.28
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (20 bp):
CTTTTTCATTTCTTTCATCT
Found at i:12539663 original size:16 final size:16
Alignment explanation
Indices: 12539637--12539675 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
12539627 TTCTATATTC
12539637 TTCTCTTTTGT-TTTCT
1 TTCT-TTTTGTCTTTCT
12539653 TTACTTTTTGTCTTTCT
1 TT-CTTTTTGTCTTTCT
12539670 TTCTTT
1 TTCTTT
12539676 CTTTTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.03, C:0.18, G:0.05, T:0.74
Consensus pattern (16 bp):
TTCTTTTTGTCTTTCT
Found at i:12539675 original size:31 final size:32
Alignment explanation
Indices: 12539634--12539697 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 32
12539624 TATTTCTATA
12539634 TTCTTCTCTTT-TGTTT-TCTTTACTTTTTGTCT
1 TTCTTCTCTTTCT-TTTGTCTTTA-TTTTTGTCT
*
12539666 TTCTT-TCTTTCTTTTGTTTTTATTTTTGTCT
1 TTCTTCTCTTTCTTTTGTCTTTATTTTTGTCT
12539697 T
1 T
12539698 GCTTGTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 18 0.62
32 11 0.38
ACGTcount: A:0.03, C:0.16, G:0.06, T:0.75
Consensus pattern (32 bp):
TTCTTCTCTTTCTTTTGTCTTTATTTTTGTCT
Found at i:12541109 original size:19 final size:20
Alignment explanation
Indices: 12541082--12541127 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
12541072 AGGAGACAAG
*
12541082 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
12541101 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
12541120 ATAATATT
1 ATAATATT
12541128 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:12542960 original size:13 final size:13
Alignment explanation
Indices: 12542942--12542966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12542932 AGAGAAATTG
12542942 TGATTTTATAAAA
1 TGATTTTATAAAA
12542955 TGATTTTATAAA
1 TGATTTTATAAA
12542967 TTTTCTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:12547310 original size:19 final size:20
Alignment explanation
Indices: 12547283--12547328 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
12547273 AGGAGACAAG
*
12547283 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
12547302 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
12547321 ATAATATT
1 ATAATATT
12547329 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:12552810 original size:22 final size:22
Alignment explanation
Indices: 12552782--12552829 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
12552772 TCGTCACTCC
** * *
12552782 CTTCACCATTGTGGCTTGCTTT
1 CTTCACCACCGTGGCTTCCTCT
12552804 CTTCACCACCGTGGCTTCCTCT
1 CTTCACCACCGTGGCTTCCTCT
12552826 CTTC
1 CTTC
12552830 CTTTCCTCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.08, C:0.38, G:0.15, T:0.40
Consensus pattern (22 bp):
CTTCACCACCGTGGCTTCCTCT
Found at i:12556337 original size:34 final size:34
Alignment explanation
Indices: 12556294--12556370 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 34
12556284 CACAAAGCTA
*
12556294 TCTAATTTTTTTGCACAAACTACCAGCAAACAGC
1 TCTAATTTTTCTGCACAAACTACCAGCAAACAGC
* * **
12556328 TCTAATTTTTCTGTACAAATTGGCAGCAAACAGC
1 TCTAATTTTTCTGCACAAACTACCAGCAAACAGC
*
12556362 TCAAATTTT
1 TCTAATTTT
12556371 CAACAGCCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (34 bp):
TCTAATTTTTCTGCACAAACTACCAGCAAACAGC
Found at i:12556649 original size:37 final size:37
Alignment explanation
Indices: 12556608--12556681 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
12556598 AAGTGCAGCA
*
12556608 AAACCGTT-TTCTTTTCTCTTCCTCTCCCACGGTTCTT
1 AAACCGTTCTT-TTTTCTCTTCCCCTCCCACGGTTCTT
12556645 AAACCGTTCTTTTTTCTCTTCCCCTCCCACGGTTCTT
1 AAACCGTTCTTTTTTCTCTTCCCCTCCCACGGTTCTT
12556682 TCTTTTCTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 33 0.94
38 2 0.06
ACGTcount: A:0.11, C:0.36, G:0.08, T:0.45
Consensus pattern (37 bp):
AAACCGTTCTTTTTTCTCTTCCCCTCCCACGGTTCTT
Found at i:12558259 original size:62 final size:62
Alignment explanation
Indices: 12558162--12558358 Score: 250
Period size: 62 Copynumber: 3.1 Consensus size: 62
12558152 TGTCATAGCT
* *
12558162 AAATTGATTTTCGCCGCGGCAAGAAACTTTCTGCCTTAGGAGTTACTGTTCTCACCACAGCC
1 AAATTGATTTTCGCCGTGGCAAGAAACTTTCTGCCTTAGGAGTTACTATTCTCACCACAGCC
* * * * *
12558224 AAATTGATTTTCACCATGGCGAGAAACTTTCTGCCTTAGAAGTTACTATTCTCACCACAGTC
1 AAATTGATTTTCGCCGTGGCAAGAAACTTTCTGCCTTAGGAGTTACTATTCTCACCACAGCC
* * ** * * *
12558286 AAATTGATTTTTGCCGTGGCAAGAAACTTTCTACCTTAGGGAGTCGCTATTCTCGCCGCAGTC
1 AAATTGATTTTCGCCGTGGCAAGAAACTTTCTGCCTTA-GGAGTTACTATTCTCACCACAGCC
12558349 AAATTTGATT
1 AAA-TTGATT
12558359 CTCAATACAG
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
62 88 0.76
63 22 0.19
64 6 0.05
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (62 bp):
AAATTGATTTTCGCCGTGGCAAGAAACTTTCTGCCTTAGGAGTTACTATTCTCACCACAGCC
Found at i:12562865 original size:19 final size:19
Alignment explanation
Indices: 12562841--12562878 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
12562831 AGTTCTAAAC
*
12562841 CTCAAATCATACTTCAATA
1 CTCAAATCATACTCCAATA
12562860 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
12562879 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:12578393 original size:48 final size:49
Alignment explanation
Indices: 12578322--12578415 Score: 156
Period size: 48 Copynumber: 1.9 Consensus size: 49
12578312 TTCAAGATTT
12578322 ACCACCCATTCCTAAAAATTTTATC-AAGTCTTAAGGTTTTGTGTTCTA
1 ACCACCCATTCCTAAAAATTTTATCTAAGTCTTAAGGTTTTGTGTTCTA
*
12578370 ACCACCCATAT-CTCAAAATTTTATCTAAGTCTTAAGGTTTTGTGTT
1 ACCACCCAT-TCCTAAAAATTTTATCTAAGTCTTAAGGTTTTGTGTT
12578416 ATAAGTGCCA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
48 22 0.51
49 21 0.49
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (49 bp):
ACCACCCATTCCTAAAAATTTTATCTAAGTCTTAAGGTTTTGTGTTCTA
Found at i:12578427 original size:48 final size:48
Alignment explanation
Indices: 12578322--12578419 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 48
12578312 TTCAAGATTT
* *
12578322 ACCACCCAT-TCCTAAAAATTTTATCAAGTCTTAAGGTTTTGTGTTCTA
1 ACCACCCATAT-CTCAAAATTTTATCAAGTCTTAAGGTTTTGTGTTATA
12578370 ACCACCCATATCTCAAAATTTTATCTAAGTCTTAAGGTTTTGTGTTATA
1 ACCACCCATATCTCAAAATTTTATC-AAGTCTTAAGGTTTTGTGTTATA
12578419 A
1 A
12578420 GTGCCATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
48 22 0.48
49 24 0.52
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (48 bp):
ACCACCCATATCTCAAAATTTTATCAAGTCTTAAGGTTTTGTGTTATA
Found at i:12579300 original size:19 final size:19
Alignment explanation
Indices: 12579276--12579314 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
12579266 GTGGAAGTAT
12579276 ACACCTCAAAATTTCTCTC
1 ACACCTCAAAATTTCTCTC
12579295 ACACCTCAAAATTTCTCTC
1 ACACCTCAAAATTTCTCTC
12579314 A
1 A
12579315 TTCTTCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (19 bp):
ACACCTCAAAATTTCTCTC
Found at i:12583985 original size:10 final size:11
Alignment explanation
Indices: 12583967--12583995 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
12583957 CTTAGGGTTC
12583967 TTGTTCTTCCT
1 TTGTTCTTCCT
12583978 TT-TTCTTCCT
1 TTGTTCTTCCT
12583988 TTGTTCTT
1 TTGTTCTT
12583996 GCTGTGGCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.00, C:0.24, G:0.07, T:0.69
Consensus pattern (11 bp):
TTGTTCTTCCT
Found at i:12584266 original size:28 final size:28
Alignment explanation
Indices: 12584209--12584268 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
12584199 TGGGTGGTGT
* * *
12584209 AAAATTACAATTTTGCCCTTAAGGTGGA
1 AAAATGACAATTTTGCCCTTAAGCTCGA
* *
12584237 AAAATGACTATTTTGCCCTTATGCTCGA
1 AAAATGACAATTTTGCCCTTAAGCTCGA
12584265 AAAA
1 AAAA
12584269 ATGTCAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (28 bp):
AAAATGACAATTTTGCCCTTAAGCTCGA
Found at i:12586540 original size:21 final size:22
Alignment explanation
Indices: 12586515--12586555 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
12586505 CCTAGGTGGA
*
12586515 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
12586536 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
12586556 AAAAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:12586556 original size:20 final size:21
Alignment explanation
Indices: 12586515--12586559 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
12586505 CCTAGGTGGA
*
12586515 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
12586536 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
12586556 AAAA
1 AAAA
12586560 AAAGGTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:12586560 original size:21 final size:20
Alignment explanation
Indices: 12586513--12586560 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
12586503 ACCCTAGGTG
*
12586513 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
12586533 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
12586555 GAAAAA
1 GAAAAA
12586561 AAGGTAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:12593021 original size:63 final size:63
Alignment explanation
Indices: 12592953--12593116 Score: 204
Period size: 63 Copynumber: 2.6 Consensus size: 63
12592943 TAATCGATGT
* * *
12592953 AACCGTGCATGTGCGGAGTGGGCAGTGCATATGCCGGTTGAATGACGATGTTGAGACAAC-TAC
1 AACCGTGCATATGCGGAGTGGGCAGTGCATATGCCGATCGAATGACGATGTTGAGAC-ACTTAC
* * * *
12593016 AACCGTGCATATGCGGAGTAGGCAATGCATATGCCGATCGAATGATGATGTTGTGACACTTAC
1 AACCGTGCATATGCGGAGTGGGCAGTGCATATGCCGATCGAATGACGATGTTGAGACACTTAC
* * * * *
12593079 AACTGTGCATATGCGAAGTGGGTAGTGCACATGTCGAT
1 AACCGTGCATATGCGGAGTGGGCAGTGCATATGCCGAT
12593117 AATGATGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
62 2 0.02
63 84 0.98
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (63 bp):
AACCGTGCATATGCGGAGTGGGCAGTGCATATGCCGATCGAATGACGATGTTGAGACACTTAC
Found at i:12594318 original size:35 final size:35
Alignment explanation
Indices: 12594272--12594346 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
12594262 GGTCGTGATA
* * * * *
12594272 ATCATCATGTGCACTCCCTAGTCGCACATTTCTAT
1 ATCATCATGTGCACGCCCTACTAGCACACTTCAAT
*
12594307 ATCATCGTGTGCACGCCCTACTAGCACACTTCAAT
1 ATCATCATGTGCACGCCCTACTAGCACACTTCAAT
12594342 ATCAT
1 ATCAT
12594347 TACACGCACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (35 bp):
ATCATCATGTGCACGCCCTACTAGCACACTTCAAT
Found at i:12594705 original size:2 final size:2
Alignment explanation
Indices: 12594698--12594726 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
12594688 ATGGAAAATA
12594698 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
12594727 AGAATGTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:12599154 original size:21 final size:20
Alignment explanation
Indices: 12599130--12599177 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 20
12599120 ATCTTACCTT
12599130 TTTTTCACTTATTCCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
12599151 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
12599172 TTTTTC
1 TTTTTC
12599178 CACCTAAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 18 0.75
22 5 0.21
ACGTcount: A:0.17, C:0.25, G:0.04, T:0.54
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:12599177 original size:22 final size:22
Alignment explanation
Indices: 12599135--12599175 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
12599125 ACCTTTTTTT
12599135 CACTTATTCCCTTGAATTTTCA
1 CACTTATTCCCTTGAATTTTCA
12599157 CACTT-TTCCCTTGAATTTT
1 CACTTATTCCCTTGAATTTT
12599176 TCCACCTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.20, C:0.27, G:0.05, T:0.49
Consensus pattern (22 bp):
CACTTATTCCCTTGAATTTTCA
Found at i:12603313 original size:25 final size:25
Alignment explanation
Indices: 12603285--12603334 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
12603275 CCAAATGTAG
12603285 AAAATCGATTCTTCAAGATTGCAAA
1 AAAATCGATTCTTCAAGATTGCAAA
12603310 AAAATCGATTCTTCAAGATTGCAAA
1 AAAATCGATTCTTCAAGATTGCAAA
12603335 GGTGTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (25 bp):
AAAATCGATTCTTCAAGATTGCAAA
Found at i:12604039 original size:35 final size:35
Alignment explanation
Indices: 12603963--12604040 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
12603953 GTGTCTTGAT
* * * * *
12603963 AAAGATTACGCCTGATCCTGCAAAAGGCATATTGT
1 AAAGGTTACGCCTAATCCTGCAAAAAGAATATTGC
* *
12603998 AGAGGTTACGCCTAATCCTGCAAAAAGAATGTTGC
1 AAAGGTTACGCCTAATCCTGCAAAAAGAATATTGC
12604033 AAAGGTTA
1 AAAGGTTA
12604041 TGCTTAACCC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (35 bp):
AAAGGTTACGCCTAATCCTGCAAAAAGAATATTGC
Found at i:12607436 original size:39 final size:39
Alignment explanation
Indices: 12607382--12607483 Score: 141
Period size: 39 Copynumber: 2.6 Consensus size: 39
12607372 GTGTCGGTAG
* *
12607382 TGTGCGGTGTGGGAGAGCACATGCTGATGATATACGCCC
1 TGTGCGGTGTGGGAGAGCACATGATGATGATATACGCCA
* * *
12607421 TGTGTGGTGTAGGAGAGCACATGATGATGATATATGCCA
1 TGTGCGGTGTGGGAGAGCACATGATGATGATATACGCCA
* *
12607460 TGTACGGTGTGGGAGTGCACATGA
1 TGTGCGGTGTGGGAGAGCACATGA
12607484 GGATATTAGC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.24, C:0.15, G:0.36, T:0.25
Consensus pattern (39 bp):
TGTGCGGTGTGGGAGAGCACATGATGATGATATACGCCA
Found at i:12609557 original size:2 final size:2
Alignment explanation
Indices: 12609552--12609582 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
12609542 TATATAGCAA
*
12609552 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12609583 CACCACCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:12609665 original size:54 final size:54
Alignment explanation
Indices: 12609595--12609737 Score: 241
Period size: 54 Copynumber: 2.6 Consensus size: 54
12609585 CCACCATCTC
*
12609595 ACCCAACTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCTCGTCTA
1 ACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCTCGTCTA
* *
12609649 ACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCTCGTCTC
1 ACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCTCGTCTA
* *
12609703 ACCCAGCTCATGCGCATCCCCCCACATTGTGCACA
1 ACCCAGCTCATGTGCATCCCCCCACATCGTGCACA
12609738 AGCAATATCA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.23, C:0.44, G:0.15, T:0.18
Consensus pattern (54 bp):
ACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCTCGTCTA
Found at i:12613809 original size:34 final size:34
Alignment explanation
Indices: 12613765--12613885 Score: 154
Period size: 35 Copynumber: 3.5 Consensus size: 34
12613755 AAAAACCATT
*
12613765 TTTG-AAGGGTTTCACTTGATCTTGAGAAAAAGC
1 TTTGTAAGGGTTTCACTTGATCTTGTGAAAAAGC
*
12613798 TTTGTAAGGGTTTCACTTAATCTTGTGAAAAAGCC
1 TTTGTAAGGGTTTCACTTGATCTTGTGAAAAAG-C
* ** *
12613833 ATTGTAAGGGTTTTGCTTGATCTCGTGAAAAAGC
1 TTTGTAAGGGTTTCACTTGATCTTGTGAAAAAGC
*
12613867 TATTGTGAGGGTTTCACTT
1 T-TTGTAAGGGTTTCACTT
12613886 AACCTCATAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
33 4 0.05
34 27 0.36
35 43 0.58
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.37
Consensus pattern (34 bp):
TTTGTAAGGGTTTCACTTGATCTTGTGAAAAAGC
Found at i:12613898 original size:69 final size:70
Alignment explanation
Indices: 12613769--12613905 Score: 179
Period size: 69 Copynumber: 2.0 Consensus size: 70
12613759 ACCATTTTTG
* * **
12613769 AAGGGTTTCACTTGATCTTGAGAAAAAGCTTTGTAAGGGTTTCACTTAATCTTGTGAAAAAGC-C
1 AAGGGTTTCACTTGATCTCGAGAAAAAGCTTTGTAAGGGTTTCACTTAACCTCATGAAAAAGCTC
12613833 ATTGT
66 ATTGT
** * *
12613838 AAGGGTTTTGCTTGATCTCGTGAAAAAGCTATTGTGAGGGTTTCACTTAACCTCAT-AAAAAGCT
1 AAGGGTTTCACTTGATCTCGAGAAAAAGCT-TTGTAAGGGTTTCACTTAACCTCATGAAAAAGCT
12613902 CATT
65 CATT
12613906 TCCCTTAGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
69 33 0.57
70 25 0.43
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (70 bp):
AAGGGTTTCACTTGATCTCGAGAAAAAGCTTTGTAAGGGTTTCACTTAACCTCATGAAAAAGCTC
ATTGT
Found at i:12615171 original size:54 final size:55
Alignment explanation
Indices: 12615051--12615204 Score: 211
Period size: 54 Copynumber: 2.8 Consensus size: 55
12615041 ACAACCATTA
* * * *
12615051 GTCATCTGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCATCCTCTG
1 GTCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCACCCACCG
* * * *
12615106 ATCATCGGCTCATGTGCACTCCCACACC-TACGTAGCTGGAATCATCACCCACCG
1 GTCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCACCCACCG
* *
12615160 GTCATCAGCTCATGTGCACTCCCACACCGCACATGGCTTGAATCA
1 GTCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCA
12615205 CCCGTCATCA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 47 0.55
55 38 0.45
ACGTcount: A:0.23, C:0.37, G:0.17, T:0.23
Consensus pattern (55 bp):
GTCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCACCCACCG
Found at i:12616136 original size:24 final size:24
Alignment explanation
Indices: 12616109--12616162 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
12616099 AGAAGTTGGG
* *
12616109 AGAAAAAAGAAGTAAGAAAAGAAA
1 AGAAAAAACAAGAAAGAAAAGAAA
** *
12616133 AGAAAGGACAAGAAAGGAAAGAAA
1 AGAAAAAACAAGAAAGAAAAGAAA
12616157 AGAAAA
1 AGAAAA
12616163 TGGAAAAAGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.72, C:0.02, G:0.24, T:0.02
Consensus pattern (24 bp):
AGAAAAAACAAGAAAGAAAAGAAA
Found at i:12617852 original size:17 final size:17
Alignment explanation
Indices: 12617803--12617856 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
12617793 TTGTACATGA
12617803 TCCCTAATAAAATGTTG
1 TCCCTAATAAAATGTTG
* * *
12617820 T-CTTATTTCTAAATGTTG
1 TCCCTA-AT-AAAATGTTG
12617838 TCCCTAATAAAATGTTG
1 TCCCTAATAAAATGTTG
12617855 TC
1 TC
12617857 TTATTCCCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
16 3 0.11
17 12 0.43
18 10 0.36
19 3 0.11
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TCCCTAATAAAATGTTG
Found at i:12647740 original size:39 final size:39
Alignment explanation
Indices: 12647682--12647829 Score: 188
Period size: 39 Copynumber: 3.8 Consensus size: 39
12647672 CAACCAAATG
* * *
12647682 CCTTTTCAATGATGAAGCACAACCTCAACAAAAGTCACTA
1 CCTTTT-AAGGATCAAGCACAACCTTAACAAAAGTCACTA
* * *
12647722 CCTTTTTAGGATTAAGCACAACCTTAATAAAAGTCACTA
1 CCTTTTAAGGATCAAGCACAACCTTAACAAAAGTCACTA
* *
12647761 CCTTTTAAAGATCGAGCACAACCTTAACAAAAGTCACTA
1 CCTTTTAAGGATCAAGCACAACCTTAACAAAAGTCACTA
* * *
12647800 CCTTTTCAGGATCGAGCATAACCTTAACAA
1 CCTTTTAAGGATCAAGCACAACCTTAACAA
12647830 CCAAATGCCT
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 89 0.94
40 6 0.06
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (39 bp):
CCTTTTAAGGATCAAGCACAACCTTAACAAAAGTCACTA
Found at i:12660574 original size:2 final size:2
Alignment explanation
Indices: 12660567--12660648 Score: 128
Period size: 2 Copynumber: 40.5 Consensus size: 2
12660557 GAGAACCAAG
*
12660567 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GTG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
**
12660610 NG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12660649 GTGTGTGTGT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
2 74 0.99
3 1 0.01
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:12662192 original size:5 final size:5
Alignment explanation
Indices: 12662182--12662228 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
12662172 AGAAAGAAGT
* * *
12662182 AAGAA AAGAA AAGAA ATGAA AAGAA ATG-A AGGAA AAGAA AATGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AA-GAA AA
12662229 AAGCTTGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
4 3 0.09
5 27 0.77
6 5 0.14
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.06
Consensus pattern (5 bp):
AAGAA
Found at i:12662204 original size:15 final size:15
Alignment explanation
Indices: 12662184--12662227 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
12662174 AAAGAAGTAA
*
12662184 GAAAAGAAAAGAAAT
1 GAAAAGAAAAGAAAG
*
12662199 GAAAAGAAATG-AAG
1 GAAAAGAAAAGAAAG
12662213 GAAAAGAAAATGAAA
1 GAAAAGAAAA-GAAA
12662228 AAAGCTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 11 0.46
15 11 0.46
16 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (15 bp):
GAAAAGAAAAGAAAG
Found at i:12667916 original size:21 final size:20
Alignment explanation
Indices: 12667892--12667935 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
12667882 TAAAGGTAGA
*
12667892 TTTTGTTGGTGGTTTATTGTG
1 TTTTGTGGGTGGTTT-TTGTG
* *
12667913 TTTTGTGGGTTGTTTTTTTG
1 TTTTGTGGGTGGTTTTTGTG
12667933 TTT
1 TTT
12667936 ATTTGGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.02, C:0.00, G:0.30, T:0.68
Consensus pattern (20 bp):
TTTTGTGGGTGGTTTTTGTG
Found at i:12670163 original size:14 final size:15
Alignment explanation
Indices: 12670131--12670164 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
12670121 TCTTCGAATC
*
12670131 TAAAAACATGAAGTT
1 TAAAAACATGAAGTA
12670146 TAAAAACATG-AGTA
1 TAAAAACATGAAGTA
12670160 TAAAA
1 TAAAA
12670165 CTCAGTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (15 bp):
TAAAAACATGAAGTA
Found at i:12670647 original size:22 final size:22
Alignment explanation
Indices: 12670621--12670691 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
12670611 TAAGAGTTTC
* * *
12670621 TCGCTACAGCGAGAATCCATTT
1 TCGCTACAGCAAGAATTCTTTT
**
12670643 TCGCTGTAGCAAGAATTCTTTT
1 TCGCTACAGCAAGAATTCTTTT
*
12670665 TCGCTACAGCTAGAATTCTTTT
1 TCGCTACAGCAAGAATTCTTTT
12670687 TCGCT
1 TCGCT
12670692 GCAATGAGAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (22 bp):
TCGCTACAGCAAGAATTCTTTT
Found at i:12670900 original size:27 final size:28
Alignment explanation
Indices: 12670861--12670934 Score: 78
Period size: 32 Copynumber: 2.5 Consensus size: 28
12670851 TCATTATTCA
* * *
12670861 TTTCAATCACATAT-TATAATCATAAAT
1 TTTCTATCCCATATATATAAACATAAAT
12670888 TTTCTATCCCATATACATATATAAACATAAAT
1 TTTCTATCCC--AT--ATATATAAACATAAAT
12670920 TTTCTATCCCATATA
1 TTTCTATCCCATATA
12670935 CATATATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
27 8 0.21
28 3 0.08
29 2 0.05
30 2 0.05
31 2 0.05
32 22 0.56
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (28 bp):
TTTCTATCCCATATATATAAACATAAAT
Found at i:12670917 original size:32 final size:32
Alignment explanation
Indices: 12670869--12670948 Score: 142
Period size: 32 Copynumber: 2.5 Consensus size: 32
12670859 CATTTCAATC
*
12670869 ACATATTATAATCATAAATTTTCTATCCCATAT
1 ACATA-TATAAACATAAATTTTCTATCCCATAT
12670902 ACATATATAAACATAAATTTTCTATCCCATAT
1 ACATATATAAACATAAATTTTCTATCCCATAT
12670934 ACATATATAAACATA
1 ACATATATAAACATA
12670949 TATAAACATG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 41 0.89
33 5 0.11
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (32 bp):
ACATATATAAACATAAATTTTCTATCCCATAT
Found at i:12671051 original size:46 final size:45
Alignment explanation
Indices: 12671000--12671135 Score: 170
Period size: 46 Copynumber: 3.0 Consensus size: 45
12670990 CGAGTCATCC
12671000 TCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTGGGTTATCA
1 TCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTGGG-TATCA
*
12671046 TCATCGGCTTATGCGCACTCCCTATTCGCACATAGCTGGG--TCA
1 TCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTGGGTATCA
* * ** *
12671089 TCATCAGCTCATGTACACTCCC-ACATCTCACATAGCTGGGTCATCA
1 TCATCGGCTTATGCGCACTCCCTAC-TCGCACATAGCTGGGT-ATCA
12671135 T
1 T
12671136 GATCACACAA
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.01
43 35 0.44
46 43 0.54
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.28
Consensus pattern (45 bp):
TCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTGGGTATCA
Found at i:12671108 original size:43 final size:43
Alignment explanation
Indices: 12671000--12671135 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 43
12670990 CGAGTCATCC
* * * *
12671000 TCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTGGGTTATCA
1 TCATCAGCTCATGCACACTCCCTAATCGCACATAGCTGGG---TCA
* * * *
12671046 TCATCGGCTTATGCGCACTCCCTATTCGCACATAGCTGGGTCA
1 TCATCAGCTCATGCACACTCCCTAATCGCACATAGCTGGGTCA
* *
12671089 TCATCAGCTCATGTACACTCCC-ACATCTCACATAGCTGGGTCA
1 TCATCAGCTCATGCACACTCCCTA-ATCGCACATAGCTGGGTCA
12671132 TCAT
1 TCAT
12671136 GATCACACAA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
42 1 0.01
43 42 0.51
46 39 0.48
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.28
Consensus pattern (43 bp):
TCATCAGCTCATGCACACTCCCTAATCGCACATAGCTGGGTCA
Found at i:12672715 original size:16 final size:17
Alignment explanation
Indices: 12672696--12672728 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
12672686 TTGTGAGATT
12672696 GAAAAAAAAGAA-AAAA
1 GAAAAAAAAGAAGAAAA
12672712 GAAAAAAAAGAAGAAAA
1 GAAAAAAAAGAAGAAAA
12672729 AGTGTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
GAAAAAAAAGAAGAAAA
Found at i:12674583 original size:2 final size:2
Alignment explanation
Indices: 12674576--12674610 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
12674566 AACTAACTCA
12674576 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
12674611 CAATATTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12686775 original size:37 final size:38
Alignment explanation
Indices: 12686722--12686843 Score: 196
Period size: 37 Copynumber: 3.3 Consensus size: 38
12686712 TAATGTTGTG
*
12686722 TGATGATGAT-GAAGTGTGCGAGTAGGTAGTGCACACA
1 TGATGATGATAGAAGTGTGCGAGTAGGGAGTGCACACA
12686759 TGATGATGATAG-AGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGATAGAAGTGTGCGAGTAGGGAGTGCACACA
* *
12686796 TGATGATG-TTGAAATGTGCGAGTAGGGAGTGCACACA
1 TGATGATGATAGAAGTGTGCGAGTAGGGAGTGCACACA
12686833 TGATGATGATA
1 TGATGATGATA
12686844 TTGCATTAAG
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
36 2 0.03
37 74 0.95
38 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.35, T:0.25
Consensus pattern (38 bp):
TGATGATGATAGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:12703906 original size:54 final size:54
Alignment explanation
Indices: 12703839--12704107 Score: 430
Period size: 54 Copynumber: 5.0 Consensus size: 54
12703829 GATGGTGATA
*
12703839 ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGCTGAGATGGG
1 ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGG
* *
12703893 ATGTCCGACTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGGG
1 ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGG
* *
12703947 ATGTCCGGCTATGTGCACGATGAGGTGGGATGCACATGAGCTGGGTGAGATAGG
1 ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGG
* * * *
12704001 ATGTCCGACTATGTGCACGATGAGGTGGGATGCACATGAGTTGGGTGAGATAGG
1 ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGG
* * *
12704055 ATGTCCGGCTATGTGCACGATGTGGTGAGATGCACACGAGCTGAGTGAGATGG
1 ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGG
12704108 AATGATTGCT
Statistics
Matches: 199, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 199 1.00
ACGTcount: A:0.22, C:0.15, G:0.40, T:0.24
Consensus pattern (54 bp):
ATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGG
Found at i:12704002 original size:25 final size:25
Alignment explanation
Indices: 12703974--12704057 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
12703964 CGATGAGGTG
12703974 GGATGCACATGAGCTGGGTGAGATA
1 GGATGCACATGAGCTGGGTGAGATA
* ** * * *
12703999 GGATGTCCGACTATGTGCACGATGAGGTG
1 GGATG--C-AC-ATGAGCTGGGTGAGATA
*
12704028 GGATGCACATGAGTTGGGTGAGATA
1 GGATGCACATGAGCTGGGTGAGATA
12704053 GGATG
1 GGATG
12704058 TCCGGCTATG
Statistics
Matches: 42, Mismatches: 13, Indels: 8
0.67 0.21 0.13
Matches are distributed among these distances:
25 20 0.48
26 2 0.05
27 2 0.05
28 2 0.05
29 16 0.38
ACGTcount: A:0.25, C:0.12, G:0.40, T:0.23
Consensus pattern (25 bp):
GGATGCACATGAGCTGGGTGAGATA
Found at i:12706988 original size:37 final size:37
Alignment explanation
Indices: 12706947--12707019 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
12706937 ATGATGTTGA
*
12706947 AGTGTACGAGTAGGGAGTGCACACATGATGATGATAG
1 AGTGTACGAGTAGGGAGTGCACACATGATAATGATAG
*
12706984 AGTGTGCGAGTAGGGAGTGCACACATGATAATGATA
1 AGTGTACGAGTAGGGAGTGCACACATGATAATGATA
12707020 TTGCATTGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.33, C:0.11, G:0.34, T:0.22
Consensus pattern (37 bp):
AGTGTACGAGTAGGGAGTGCACACATGATAATGATAG
Found at i:12707337 original size:30 final size:30
Alignment explanation
Indices: 12707296--12707376 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 30
12707286 ACTAACTTGA
*
12707296 TTCTTGCTGCAGCGAGAAATTTACTGAAGC
1 TTCTCGCTGCAGCGAGAAATTTACTGAAGC
* *
12707326 TTCTCGCTGCAGTGAGAATAAAATTTGCTGAAGC
1 TTCTCGCTGCAGCGAG----AAATTTACTGAAGC
12707360 TTCTCGCTGCAGCGAGA
1 TTCTCGCTGCAGCGAGA
12707377 TTTATTCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
30 15 0.35
34 28 0.65
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (30 bp):
TTCTCGCTGCAGCGAGAAATTTACTGAAGC
Found at i:12707357 original size:34 final size:34
Alignment explanation
Indices: 12707312--12707376 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
12707302 CTGCAGCGAG
*
12707312 AAATTTACTGAAGCTTCTCGCTGCAGTGAGAATA
1 AAATTTACTGAAGCTTCTCGCTGCAGCGAGAATA
*
12707346 AAATTTGCTGAAGCTTCTCGCTGCAGCGAGA
1 AAATTTACTGAAGCTTCTCGCTGCAGCGAGA
12707377 TTTATTCTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (34 bp):
AAATTTACTGAAGCTTCTCGCTGCAGCGAGAATA
Found at i:12710913 original size:36 final size:35
Alignment explanation
Indices: 12710873--12711004 Score: 131
Period size: 36 Copynumber: 3.6 Consensus size: 35
12710863 CTTTTTCAAG
12710873 AGGATCAAGCATAACCTTTACAACATGCCTTTTGAT
1 AGGATCAAGCATAACCTTTACAACATGCCTTTTG-T
* * * **
12710909 AGGATCATGCGTAACCTTCACAATGTGCCTTTTGT
1 AGGATCAAGCATAACCTTTACAACATGCCTTTTGT
*
12710944 AGGATCAAGCATAACCTTTATCAAGACACTACCTTTT-T
1 AGGATCAAGCATAACCTTTA-C-A-ACA-TGCCTTTTGT
* *
12710982 CAGGTTCAAGCATAAACTTTACA
1 -AGGATCAAGCATAACCTTTACA
12711005 CAAGATGCAG
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
35 18 0.23
36 30 0.38
37 2 0.03
38 3 0.04
39 25 0.32
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (35 bp):
AGGATCAAGCATAACCTTTACAACATGCCTTTTGT
Found at i:12712083 original size:19 final size:17
Alignment explanation
Indices: 12712053--12712087 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
12712043 CACTTTGAAT
12712053 TTTGAAAATAAGAAATC
1 TTTGAAAATAAGAAATC
12712070 TTTGAGAAACTAAGAAAT
1 TTTGA-AAA-TAAGAAAT
12712088 ATTTCTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (17 bp):
TTTGAAAATAAGAAATC
Found at i:12713481 original size:28 final size:29
Alignment explanation
Indices: 12713440--12713504 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
12713430 GTCTATGGGC
*
12713440 AATTTTTCAATTTT-TGGGGTAAAAATGT
1 AATTTTTCAATTTTAGGGGGTAAAAATGT
* * *
12713468 AATTTTTGACTTTTACGGGGGTAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGTAAAAATGT
*
12713498 AAATTTT
1 AATTTTT
12713505 AAAAATTACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 12 0.40
30 18 0.60
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.45
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGTAAAAATGT
Found at i:12718129 original size:57 final size:57
Alignment explanation
Indices: 12717990--12718239 Score: 216
Period size: 57 Copynumber: 4.3 Consensus size: 57
12717980 TCTCGTCTTT
* * * * * * * *
12717990 AATTAAGACAAAACATGTTATCTTGTCTGATATTGAGAAAAACATGTTGTCTTCTTTA
1 AATTAAGACAAAACATGTTTTCTTGTC-AAGATTAAGACAAACATGTTTTCTTGTCTA
* * * * * * *
12718048 GATTAGGAAAAAAAATAATATTTTCTTCTCAAGATTAAAACAAACATGTTTTCTTGTCTA
1 AATTA--AGACAAAA-CATGTTTTCTTGTCAAGATTAAGACAAACATGTTTTCTTGTCTA
* * *
12718108 AATTAAGACAAAACATGTTTTCTTGTCTAA-ATTAAGATAAACATGTTTGCTAGTCTA
1 AATTAAGACAAAACATGTTTTCTTGTC-AAGATTAAGACAAACATGTTTTCTTGTCTA
* * * *
12718165 AATTAAGACAAAACATGTTTTGTTGTCCAAG-TTAAGACAAAACCTATTTTTTTGTCTA
1 AATTAAGACAAAACATGTTTTCTTGT-CAAGATTAAGAC-AAACATGTTTTCTTGTCTA
*
12718223 AATTAAGATAAAACATG
1 AATTAAGACAAAACATG
12718240 CAAAAGTTAC
Statistics
Matches: 152, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
57 67 0.44
58 43 0.28
60 32 0.21
61 10 0.07
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (57 bp):
AATTAAGACAAAACATGTTTTCTTGTCAAGATTAAGACAAACATGTTTTCTTGTCTA
Found at i:12718130 original size:29 final size:29
Alignment explanation
Indices: 12717990--12718239 Score: 220
Period size: 29 Copynumber: 8.6 Consensus size: 29
12717980 TCTCGTCTTT
*
12717990 AATTAAGACAAAACATGTTATCTTGTCTGA
1 AATTAAGACAAAACATGTTTTCTTGTCT-A
* * * * *
12718020 TATTGAGA-AAAACATGTTGTCTTCTTTA
1 AATTAAGACAAAACATGTTTTCTTGTCTA
* * * * * *
12718048 GATTAGGAAAAAAAATAATATTTTCTTCTC-A
1 AATTA--AGACAAAA-CATGTTTTCTTGTCTA
*
12718079 AGATTAAAAC-AAACATGTTTTCTTGTCTA
1 A-ATTAAGACAAAACATGTTTTCTTGTCTA
12718108 AATTAAGACAAAACATGTTTTCTTGTCTA
1 AATTAAGACAAAACATGTTTTCTTGTCTA
* * *
12718137 AATTAAGA-TAAACATGTTTGCTAGTCTA
1 AATTAAGACAAAACATGTTTTCTTGTCTA
* *
12718165 AATTAAGACAAAACATGTTTTGTTGTCCA
1 AATTAAGACAAAACATGTTTTCTTGTCTA
* * * *
12718194 AGTTAAGACAAAACCTATTTTTTTGTCTA
1 AATTAAGACAAAACATGTTTTCTTGTCTA
*
12718223 AATTAAGATAAAACATG
1 AATTAAGACAAAACATG
12718240 CAAAAGTTAC
Statistics
Matches: 177, Mismatches: 35, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
28 47 0.27
29 100 0.56
30 11 0.06
31 5 0.03
32 14 0.08
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (29 bp):
AATTAAGACAAAACATGTTTTCTTGTCTA
Found at i:12718191 original size:86 final size:86
Alignment explanation
Indices: 12718081--12718239 Score: 239
Period size: 86 Copynumber: 1.8 Consensus size: 86
12718071 TCTTCTCAAG
* *
12718081 ATTAAAACAAACATGTTTTCTTGTCTAAATTAAGACAAAACATGTTTTCTTGTCTAAATTAAGAT
1 ATTAAAACAAACATGTTTTCTTGTCCAAATTAAGACAAAACATATTTTCTTGTCTAAATTAAGAT
12718146 -AAACATGTTTGCTAGTCTAA
66 AAAACATGTTTGCTAGTCTAA
* * * * *
12718166 ATTAAGACAAAACATGTTTTGTTGTCCAAGTTAAGACAAAACCTATTTTTTTGTCTAAATTAAGA
1 ATTAAAAC-AAACATGTTTTCTTGTCCAAATTAAGACAAAACATATTTTCTTGTCTAAATTAAGA
12718231 TAAAACATG
65 TAAAACATG
12718240 CAAAAGTTAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
85 7 0.11
86 51 0.78
87 7 0.11
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (86 bp):
ATTAAAACAAACATGTTTTCTTGTCCAAATTAAGACAAAACATATTTTCTTGTCTAAATTAAGAT
AAAACATGTTTGCTAGTCTAA
Found at i:12721771 original size:21 final size:21
Alignment explanation
Indices: 12721742--12721782 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
12721732 CTGCAGCGAG
* *
12721742 AAATTTCACCGTAGCGAGAAT
1 AAATCTCACCGCAGCGAGAAT
*
12721763 AAATCTCACTGCAGCGAGAA
1 AAATCTCACCGCAGCGAGAA
12721783 ACTCTCAGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (21 bp):
AAATCTCACCGCAGCGAGAAT
Found at i:12728602 original size:27 final size:28
Alignment explanation
Indices: 12728557--12728614 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
12728547 TTCATGACGT
*
12728557 AAGGGCAAAATGGTCATTTT-GCCACCC
1 AAGGGCAAAATGGTAATTTTAGCCACCC
12728584 AAGGGCAAAATTGG-AATTTTACGCCACCC
1 AAGGGCAAAA-TGGTAATTTTA-GCCACCC
12728613 AA
1 AA
12728615 CACTTGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 15 0.56
28 3 0.11
29 9 0.33
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (28 bp):
AAGGGCAAAATGGTAATTTTAGCCACCC
Found at i:12739296 original size:22 final size:23
Alignment explanation
Indices: 12739255--12739297 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
12739245 TAGCGTTATT
**
12739255 TTAATGTAAGACAACTCTTGTCC
1 TTAATGTAAGACAAAACTTGTCC
12739278 TTAAT-TAAGACAAAACTTGT
1 TTAATGTAAGACAAAACTTGT
12739298 TATCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (23 bp):
TTAATGTAAGACAAAACTTGTCC
Found at i:12739332 original size:29 final size:28
Alignment explanation
Indices: 12739270--12739613 Score: 314
Period size: 29 Copynumber: 11.9 Consensus size: 28
12739260 GTAAGACAAC
* * *
12739270 TCTTGTCCTTAATTAAGACAAAACTTGTTA
1 TCTTGT-CTAAATTAAGAC-AAACATGTTT
*
12739300 TCTTGTCTAATATTGAGACAAACATGTTT
1 TCTTGTCTAA-ATTAAGACAAACATGTTT
* * * *
12739329 TCTTCTCTAGATTAAGATAGAACATATTTT
1 TCTTGTCTAAATTAAGACA-AACAT-GTTT
**
12739359 TCTTGTCTAAATTAAGACAAATGTGTTTT
1 TCTTGTCTAAATTAAGACAAACATG-TTT
* *
12739388 TTTTATCTAAATTAAGACAAAACATGTTT
1 TCTTGTCTAAATTAAGAC-AAACATGTTT
*
12739417 TCTTGTCTAAATTAAGAGAAACATGTTT
1 TCTTGTCTAAATTAAGACAAACATGTTT
*
12739445 TCTTGTCTAAATTAAGACAAAACATATTT
1 TCTTGTCTAAATTAAGAC-AAACATGTTT
* * * * *
12739474 TATTGTCCAAATTAAAACAAAACTTCTTT
1 TCTTGTCTAAATTAAGAC-AAACATGTTT
* * *
12739503 TGTTGTCCAAATTAAGATAAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATGTTT
* *
12739532 TCGTGTCTAAATTAAGACAAAACATGCTT
1 TCTTGTCTAAATTAAGAC-AAACATGTTT
* *
12739561 TCTTGTTTAAATTAAGAC--ACATGTAT
1 TCTTGTCTAAATTAAGACAAACATGTTT
* *
12739587 TCTTGTATACATTAAGACAAAACATGT
1 TCTTGTCTAAATTAAGAC-AAACATGT
12739614 AAAAGTTGCC
Statistics
Matches: 258, Mismatches: 45, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
26 22 0.09
28 34 0.13
29 165 0.64
30 37 0.14
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:12739582 original size:26 final size:25
Alignment explanation
Indices: 12739524--12739605 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 25
12739514 TTAAGATAAA
* *
12739524 ACATGTTTTCGTGTCTAAATTAAGAC
1 ACATG-TTTCTTGTATAAATTAAGAC
*
12739550 AAAACATGCTTTCTTGTTTAAATTAAGAC
1 ---ACATG-TTTCTTGTATAAATTAAGAC
*
12739579 ACATGTATTCTTGTATACATTAAGAC
1 ACATGT-TTCTTGTATAAATTAAGAC
12739605 A
1 A
12739606 AAACATGTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.02
26 23 0.49
29 23 0.49
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (25 bp):
ACATGTTTCTTGTATAAATTAAGAC
Found at i:12740360 original size:21 final size:21
Alignment explanation
Indices: 12740315--12740362 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
12740305 AGTCTGGACC
*
12740315 TAAAAAGTCAACCCTAGTGCA
1 TAAAAAGTCAACCCTAGTGAA
*
12740336 TAAAAAGTCAA-CCTTGTGAA
1 TAAAAAGTCAACCCTAGTGAA
12740356 GTAAAAA
1 -TAAAAA
12740363 TAGAGGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.21
Consensus pattern (21 bp):
TAAAAAGTCAACCCTAGTGAA
Found at i:12747800 original size:42 final size:42
Alignment explanation
Indices: 12747718--12747801 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
12747708 TATTGTGTAA
* **
12747718 TGATATTGACTCGACAATATGAGAGTGGGAGTGCGTATAAGC
1 TGATATTGACTCGACAATATGAGAGTGGGAGTCCACATAAGC
* * *
12747760 TGATATTGACTCGACTATGTGCGAGTGGGAGTCCACATAAGC
1 TGATATTGACTCGACAATATGAGAGTGGGAGTCCACATAAGC
12747802 CAATGCTAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (42 bp):
TGATATTGACTCGACAATATGAGAGTGGGAGTCCACATAAGC
Found at i:12747905 original size:2 final size:2
Alignment explanation
Indices: 12747898--12747945 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
12747888 GATGNGTTGG
*
12747898 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
12747940 AG AT AT
1 AT AT AT
12747946 GTGTATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:12767801 original size:56 final size:56
Alignment explanation
Indices: 12767738--12767873 Score: 199
Period size: 56 Copynumber: 2.4 Consensus size: 56
12767728 GTTGGCAGAA
12767738 TGGCCAAATGAAATAAGAAGAATAAGAATGCATGTA-TTGTGATTGGTTTCA-AAGGG
1 TGGCCAAATGAAATAAGAAGAATAAGAATGCATGTATTTG-GATTGG-TTCATAAGGG
*
12767794 TGGCCAAATGAAATAAGAAGAATAAGAATGCATGTATTTGGATTGGTTCATGAGGG
1 TGGCCAAATGAAATAAGAAGAATAAGAATGCATGTATTTGGATTGGTTCATAAGGG
*
12767850 TGGCCAAGT-AAATAAGTAA-AATAA
1 TGGCCAAATGAAATAAG-AAGAATAA
12767874 AGAGAAAAGA
Statistics
Matches: 75, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
55 16 0.21
56 56 0.75
57 3 0.04
ACGTcount: A:0.41, C:0.07, G:0.26, T:0.26
Consensus pattern (56 bp):
TGGCCAAATGAAATAAGAAGAATAAGAATGCATGTATTTGGATTGGTTCATAAGGG
Found at i:12768765 original size:181 final size:180
Alignment explanation
Indices: 12768398--12770159 Score: 1694
Period size: 181 Copynumber: 9.7 Consensus size: 180
12768388 ATAGATTAGC
* * * * *
12768398 CATTTATAAGATTAGAAATGAATT-A-ATATCATTTATAGCAAGTAACGAAGCTTTCAATGGGAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * ** * ** * * * *
12768461 CATTAACGTAAAATTATCTTTTGTCCTCAATAGATAGCATGCACGTAACGTTTACCAATGCAAAC
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACG-TT-CCAATGCAAAC
* ** * * *
12768526 ACCCAATTATGATAGGTTTTAAATATAAAGTCCAAATATTTCCATTTACAAT
129 ATCCAATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCGATTTATAAT
* * * * *
12768578 CATTTATAAGATTATAAATGAATTCATGTATCATTTAAAGCAAGTAACAAATCTTTCAATGGTAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * *
12768643 GATTAACTTAAAATGGTCTTATCTTGTTAATGAATAGCATCCACTTCACGTTCCAAATGCAAACA
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTCC-AATGCAAACA
* ** * *
12768708 TCCAATTATGATAGGTTTTAACCATAATGTCCATGGATTTTGGTTTATGAA-
130 TCCAATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCGATTTAT-AAT
* * ** *
12768759 CATTTATAAGATTGTAAAGGAATTAATATATTC-TTTAAAGTGAGTAACAAAGCTTT-TAGTGGC
1 CATTTATAAGATTATAAATGAATTAATATA-TCATTTAAAGCAAGTAACAAAGCTTTCGA-TGGC
* * *
12768822 ATAATTAACTTAAAAGGGTCTTTTCTTGTCAATGGAT-GACATCCACTTCACATTTCCCAATGCA
64 ATGATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAG-CATCCACTTCAC-GTT-CCAATGCA
* * * *
12768886 AACATCCAATTATGATAGGTTTTAACCAAGAAAAT-CATAGATTTCGATTTATAAA
126 AACATCCAATTATGATAGGTTTTAACC-ATAAAGTCCAAAGATTTCGATTTATAAT
* * * * * * **
12768941 CATTTAAAAGGTTATAAATGAACTAATATATCATTTAAAGCAAGTAACAAGGATTTCAATGGTTT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * * ** * ** * *
12769006 GATTAACTT-AGATGGTTTTTTCTTGCCAACAGATAGCATCGACTTCATATTTCTTAATACAAAC
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCA-CGTTC-CAATGCAAAC
* * ***
12769070 ATCCAATTATAATAGGTTTTAACTA-ACAAAAACAAAGATTTC-ATTTTATAAT
129 ATCCAATTATGATAGGTTTTAACCATA-AAGTCCAAAGATTTCGA-TTTATAAT
*
12769122 CAATTGT-TAA-ATTATAAATGAATTAATATATCATTTAAAGCAAG-AA-AAAGCTTTTGATGGC
1 C-ATT-TATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGC
* * * * *
12769183 ATGATTAACTTAAAATGATCTTTTCTTGCCAATGGATAGTATCCACTTCACATTTTGCAATGCAA
64 ATGATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCAC--GTTCCAATGCAA
*
12769248 ACATCCAATTATGATAGGTTTTAACCA-ACAG-CAACAAAGATTTCGAATTTATAAT
127 ACATCCAATTATGATAGGTTTTAACCATAAAGTC--CAAAGATTTCG-ATTTATAAT
* * *
12769303 CATTTATAAGTTTATAAATGAATTAATATATCATTTATAGCAAGTAACAAAGCTTTTGATGGCAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * * * * * *
12769368 CATTAACTTAAAATTGTCTTTTGTTGTCAATGGATAGTATCCAATTAATGTTTCCCAATGCAAAC
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACG-TT-CCAATGCAAAC
* * * *
12769433 ATCCAATTATGATAGGTTTTAAACATAGATTCCAAAGATTTTGATTTATAA-
129 ATCCAATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCGATTTATAAT
* * *
12769484 CATTTATAAGAATATAAATGGATTAATATATCATTGAAAGCAAGTAACAAAGCTTTCGATGGCAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * * * * *
12769549 GATTAACCTAACATGGACTTTTCTTGTCAACGGATAGCATCTACTTCACATTTCCTAATGCAAAC
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCAC-GTTCC-AATGCAAAC
* * * * *
12769614 ATCCAATTATGAGAGGTTTTAACAAACAACAAT--AAAGATTTCAATTTATAAT
129 ATCCAATTATGATAGGTTTTAAC-CATAA-AGTCCAAAGATTTCGATTTATAAT
* * * ** * * *
12769666 CAATTATAAAATTATAAATGAATTAATATATCAGTTAAAGTGAGTAATAAAGCTTTTGATGGCTT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * * * * *
12769731 GATTAACTTAAAATTGTCTTTTCTTGTCAATTGATAGCATCCATTTCACATTTCCGAATACAGAC
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCAC-GTTCC-AATGCAAAC
* * * *
12769796 ATCCAATTATGATAGGTTTTAACCATAATGTCCCAAGATTTTGATTTGTAAT
129 ATCCAATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCGATTTATAAT
* *** * * **
12769848 TATTTATAAGATTATAAATGAATTAATATATCATTTAAAATGAGTAA-TAAGCTTTTGATTACAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * * * * * *
12769912 GGTTAACTTAAAATTGTCTTTTGTTGTCAATAGACAGCATCCACCTCATGTTTCTCAATGCAAAC
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACG-TTC-CAATGCAAAC
* * * * * *
12769977 ATCCAATTTTGACAGGTTTTAAACATAAAGTCCTAATATTTTGATTTA-AAGT
129 ATCCAATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCGATTTATAA-T
* * * * *
12770029 CATTTATGACATTATAAATGAATTAATATATAATTTAAAGCGAGTAACAAAGCGTTCGATGGCAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
* * * * *
12770094 CATTAACTCAAAATGGTCTTTTCTTATCAATGGATAGCATCCACTTAATGTTCCCAATGCAAACA
66 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTT-CCAATGCAAACA
12770159 T
130 T
12770160 TGATTTTGAT
Statistics
Matches: 1308, Mismatches: 226, Indels: 95
0.80 0.14 0.06
Matches are distributed among these distances:
179 23 0.02
180 119 0.09
181 611 0.47
182 440 0.34
183 112 0.09
184 2 0.00
185 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (180 bp):
CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCGATGGCAT
GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTCCAATGCAAACAT
CCAATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCGATTTATAAT
Found at i:12769147 original size:363 final size:362
Alignment explanation
Indices: 12768398--12770139 Score: 1758
Period size: 363 Copynumber: 4.8 Consensus size: 362
12768388 ATAGATTAGC
* * * ** *
12768398 CATTTATAAGATTAGAAATGAATT-A-ATATCATTTATAGCAAGTAACGAAGCTTTCAATGGGAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAA-AAAGCTTTTGATGGCAT
* * ** * ** * * * * * *
12768461 CATTAACGTAAAATTATCTTTTGTCCTCAATAGATAGCATGCACGTAACGTTTACCAATGCAAAC
65 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATGCAAAC
* * * * * *
12768526 ACCCAATTATGATAGGTTTTAA--ATATAAAGTCCAAATATTTCCATTTACAATCATTTATAAGA
130 ATCCAATTATGATAGGTTTTAACCA-ACAAAAT-CAAAGATTTCGATTTATAATCATTTATAAGA
* * * *
12768589 TTATAAATGAATTCATGTATCATTTAAAGCAAGTAACAAATCTTTCAATGGTATGATTAACTTAA
193 TTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCATGATTAACTTAA
* * ** *
12768654 AATGGTCTTATCTTGTTAA-TGAATAGCATCCACTTCA-CGTTCCAAATGCAAACATCCAATTAT
258 AATGGTCTTTTCTTGTCAATTG-ATAGCATCCACTTCATATTTCCAAATACAAACATCCAATTAT
** ** *
12768717 GATAGGTTTTAACCATAATGTCCATGGATTTTGGTTTATGAA
322 GATAGGTTTTAACCATAAAATCCAAAGATTTTGATTTAT-AA
* * **
12768759 CATTTATAAGATTGTAAAGGAATTAATATATTC-TTTAAAGTGAGTAACAAAGCTTTT-AGTGGC
1 CATTTATAAGATTATAAATGAATTAATATA-TCATTTAAAGCAAGTAA-AAAGCTTTTGA-TGGC
* *
12768822 ATAATTAACTTAAAAGGGTCTTTTCTTGTCAATGGAT-GACATCCACTTCACATTTCCCAATGCA
63 ATGATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAG-CATCCACTTCACATTTCCCAATGCA
* * * *
12768886 AACATCCAATTATGATAGGTTTTAACCAAGAAAATCATAGATTTCGATTTATAAACATTTAAAAG
127 AACATCCAATTATGATAGGTTTTAACCAACAAAATCAAAGATTTCGATTTATAATCATTTATAAG
* * * * **
12768951 GTTATAAATGAACTAATATATCATTTAAAGCAAGTAACAAGGATTTCAATGGTTTGATTAACTT-
192 ATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCATGATTAACTTA
* * * ** * **
12769015 AGATGGTTTTTTCTTGCCAACAGATAGCATCGACTTCATATTTCTTAATACAAACATCCAATTAT
257 AAATGGTCTTTTCTTGTCAATTGATAGCATCCACTTCATATTTCCAAATACAAACATCCAATTAT
* * ** *
12769080 AATAGGTTTTAACTA-ACAAAAACAAAGA-TTTCATTTTATAA
322 GATAGGTTTTAACCATA-AAATCCAAAGATTTTGA-TTTATAA
12769121 TCAATTGT-TAA-ATTATAAATGAATTAATATATCATTTAAAGCAAG-AAAAAGCTTTTGATGGC
1 -C-ATT-TATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAAAAAGCTTTTGATGGC
* * * **
12769183 ATGATTAACTTAAAATGATCTTTTCTTGCCAATGGATAGTATCCACTTCACATTTTGCAATGCAA
63 ATGATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATGCAA
*
12769248 ACATCCAATTATGATAGGTTTTAACCAACAGCAA-CAAAGATTTCGAATTTATAATCATTTATAA
128 ACATCCAATTATGATAGGTTTTAACCAACA-AAATCAAAGATTTCG-ATTTATAATCATTTATAA
* * ** *
12769312 GTTTATAAATGAATTAATATATCATTTATAGCAAGTAACAAAGCTTTTGATGGCATCATTAACTT
191 GATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCATGATTAACTT
* * * * * * * * *
12769377 AAAATTGTCTTTTGTTGTCAATGGATAGTATCCAATTAATGTTTCCCAATGCAAACATCCAATTA
256 AAAATGGTCTTTTCTTGTCAATTGATAGCATCCACTTCATATTTCCAAATACAAACATCCAATTA
* * *
12769442 TGATAGGTTTTAAACATAGATTCCAAAGATTTTGATTTATAA
321 TGATAGGTTTTAACCATAAAATCCAAAGATTTTGATTTATAA
* * * *
12769484 CATTTATAAGAATATAAATGGATTAATATATCATTGAAAGCAAGTAACAAAGCTTTCGATGGCAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAA-AAAGCTTTTGATGGCAT
* * * * * *
12769549 GATTAACCTAACATGGACTTTTCTTGTCAACGGATAGCATCTACTTCACATTTCCTAATGCAAAC
65 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATGCAAAC
* * * * *
12769614 ATCCAATTATGAGAGGTTTTAACAAACAACAAT-AAAGATTTCAATTTATAATCAATTATAAAAT
130 ATCCAATTATGATAGGTTTTAACCAACAA-AATCAAAGATTTCGATTTATAATCATTTATAAGAT
* ** * ** *
12769678 TATAAATGAATTAATATATCAGTTAAAGTGAGTAATAAAGCTTTTGATGGCTTGATTAACTTAAA
194 TATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCATGATTAACTTAAA
* * * * *
12769743 ATTGTCTTTTCTTGTCAATTGATAGCATCCATTTCACATTTCCGAATACAGACATCCAATTATGA
259 ATGGTCTTTTCTTGTCAATTGATAGCATCCACTTCATATTTCCAAATACAAACATCCAATTATGA
** * *
12769808 TAGGTTTTAACCATAATGTCCCAAGATTTTGATTTGTAA
324 TAGGTTTTAACCATAAAATCCAAAGATTTTGATTTATAA
* *** * **
12769847 TTATTTATAAGATTATAAATGAATTAATATATCATTTAAAATGAGTAATAAGCTTTTGATTACAT
1 -CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAAAAAGCTTTTGATGGCAT
* * * * * * ** *
12769912 GGTTAACTTAAAATTGTCTTTTGTTGTCAATAGACAGCATCCACCTCATGTTTCTCAATGCAAAC
65 GATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATGCAAAC
* * * * * * * * * *
12769977 ATCCAATTTTGACAGGTTTTAAAC-ATAAAGTCCTAATATTTTGATTTA-AAGTCATTTATGACA
130 ATCCAATTATGATAGGTTTTAACCAACAAAAT-CAAAGATTTCGATTTATAA-TCATTTATAAGA
* * * * * *
12770040 TTATAAATGAATTAATATATAATTTAAAGCGAGTAACAAAGCGTTCGATGGCATCATTAACTCAA
193 TTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCATGATTAACTTAA
* *
12770105 AATGGTCTTTTCTTATCAATGGATAGCATCCACTT
258 AATGGTCTTTTCTTGTCAATTGATAGCATCCACTT
12770140 AATGTTCCCA
Statistics
Matches: 1141, Mismatches: 208, Indels: 62
0.81 0.15 0.04
Matches are distributed among these distances:
360 1 0.00
361 137 0.12
362 154 0.13
363 682 0.60
364 165 0.14
365 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (362 bp):
CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAAAAAGCTTTTGATGGCATG
ATTAACTTAAAATGGTCTTTTCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATGCAAACA
TCCAATTATGATAGGTTTTAACCAACAAAATCAAAGATTTCGATTTATAATCATTTATAAGATTA
TAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCATGATTAACTTAAAAT
GGTCTTTTCTTGTCAATTGATAGCATCCACTTCATATTTCCAAATACAAACATCCAATTATGATA
GGTTTTAACCATAAAATCCAAAGATTTTGATTTATAA
Found at i:12770155 original size:544 final size:541
Alignment explanation
Indices: 12768398--12770159 Score: 1946
Period size: 544 Copynumber: 3.2 Consensus size: 541
12768388 ATAGATTAGC
* * * *
12768398 CATTTATAAGATTAGAAATGAATT-A-ATATCATTTATAGCAAGTAACGAAGCTTTCAATGGGAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCAT
** * ** * * * * * *
12768461 CATTAACGTAAAATTATCTTTTGTCCTCAATAGATAGCATGCACGTAACGTTTACCAATGCAAAC
66 CATTAAC-TAAAATGGTCTTTTCTTGTCAACAGATAGCATCCACTTCACATTTCCCAATGCAAAC
* * * * * * * * *
12768526 ACCCAATTATGATAGGTTTTAA-ATATAAAGTCCAAATATTTCCATTTACAATCATTTATAAGAT
130 ATCCAATTATGATAGGTTTTAACAAACAAAAT--AAAGATTTCAATTTATAATCAATTATAAAAT
* * * **
12768590 TATAAATGAATTCATGTATCATTTAAAGCAAGTAACAAATCTTTCAATGG-TATGATTAACTTAA
193 TATAAATGAATTAATATATCATTTAAAGCAAGTAA-AAAGCTTTTGATGGCT-TGATTAACTTAA
* * * * *
12768654 AATGGTCTTATCTTGTTAA-TGAATAGCATCCACTTCAC-GTTCCAAATGCAAACATCCAATTAT
256 AATTGTCTTTTCTTGTCAATTG-ATAGCATCCACTTCACATTTCCGAATGCAAACATCCAATTAT
* * * *
12768717 GATAGGTTTTAACCATAATGT-CCATGGATTTTGGTTTATGAA-CATTTATAAGATTGTAAAGGA
320 GATAGGTTTTAACCATAATGTCCCA-AGATTTTGATTTAT-AATCATTTATAAGATTATAAATGA
**
12768780 ATTAATATATTC-TTTAAAGTGAGTAACAAAGCTTTT-AGTGGCATAATTAACTTAAAAGGGTCT
383 ATTAATATA-TCATTTAAAGTGAGTAACAAAGCTTTTGA-TGGCATAATTAACTTAAAATTGTCT
* * **
12768843 TTTCTTGTCAATGGATGACATCCACTTCACATTTCCCAATGCAAACATCCAATTATGATAGGTTT
446 TTTGTTGTCAATGGAAG-CATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTT
* * * *
12768908 TAACCAAGAAAATCAT-AGATTTCGATTTATAAA
510 TAAAC-ATAAAATCCTAAGATTTTGATTTAT-AA
* * * * * **
12768941 CATTTAAAAGGTTATAAATGAACTAATATATCATTTAAAGCAAGTAACAAGGATTTCAATGGTTT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCAT
* * * * * * * ** *
12769006 GATTAACTTAGATGGTTTTTTCTTGCCAACAGATAGCATCGACTTCATATTTCTTAATACAAACA
66 CATTAACTAAAATGGTCTTTTCTTGTCAACAGATAGCATCCACTTCACATTTCCCAATGCAAACA
* * * * * *
12769071 TCCAATTATAATAGGTTTTAACTAACAAAAACAAAGATTTCATTTTATAATCAATTGTTAAATTA
131 TCCAATTATGATAGGTTTTAACAAAC-AAAATAAAGATTTCAATTTATAATCAATTATAAAATTA
*
12769136 TAAATGAATTAATATATCATTTAAAGCAAG-AAAAAGCTTTTGATGGCATGATTAACTTAAAA-T
195 TAAATGAATTAATATATCATTTAAAGCAAGTAAAAAGCTTTTGATGGCTTGATTAACTTAAAATT
* * * *
12769199 GATCTTTTCTTGCCAATGGATAGTATCCACTTCACATTT-TGCAATGCAAACATCCAATTATGAT
260 G-TCTTTTCTTGTCAATTGATAGCATCCACTTCACATTTCCG-AATGCAAACATCCAATTATGAT
* * *
12769263 AGGTTTTAACCA-ACA-G-CAACAAAGATTTCGAATTTATAATCATTTATAAGTTTATAAATGAA
323 AGGTTTTAACCATA-ATGTC--CCAAGATTTTG-ATTTATAATCATTTATAAGATTATAAATGAA
* ** *
12769325 TTAATATATCATTTATAGCAAGTAACAAAGCTTTTGATGGCATCATTAACTTAAAATTGTCTTTT
384 TTAATATATCATTTAAAGTGAGTAACAAAGCTTTTGATGGCATAATTAACTTAAAATTGTCTTTT
* * *
12769390 GTTGTCAATGGATAGTATCCAATTAATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTAA
449 GTTGTCAATGGA-AGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTAA
* * *
12769455 ACATAGATTCCAAAGATTTTGATTTATAA
513 ACATAAAATCCTAAGATTTTGATTTATAA
* * * *
12769484 CATTTATAAGAATATAAATGGATTAATATATCATTGAAAGCAAGTAACAAAGCTTTCGATGGCAT
1 CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCAT
* * * * * *
12769549 GATTAACCTAACATGGACTTTTCTTGTCAACGGATAGCATCTACTTCACATTTCCTAATGCAAAC
66 CATTAA-CTAAAATGGTCTTTTCTTGTCAACAGATAGCATCCACTTCACATTTCCCAATGCAAAC
*
12769614 ATCCAATTATGAGAGGTTTTAACAAACAACAATAAAGATTTCAATTTATAATCAATTATAAAATT
130 ATCCAATTATGATAGGTTTTAACAAACAA-AATAAAGATTTCAATTTATAATCAATTATAAAATT
* **
12769679 ATAAATGAATTAATATATCAGTTAAAGTGAGTAATAAAGCTTTTGATGGCTTGATTAACTTAAAA
194 ATAAATGAATTAATATATCATTTAAAGCAAGTAA-AAAGCTTTTGATGGCTTGATTAACTTAAAA
* * *
12769744 TTGTCTTTTCTTGTCAATTGATAGCATCCATTTCACATTTCCGAATACAGACATCCAATTATGAT
258 TTGTCTTTTCTTGTCAATTGATAGCATCCACTTCACATTTCCGAATGCAAACATCCAATTATGAT
* *
12769809 AGGTTTTAACCATAATGTCCCAAGATTTTGATTTGTAATTATTTATAAGATTATAAATGAATTAA
323 AGGTTTTAACCATAATGTCCCAAGATTTTGATTTATAATCATTTATAAGATTATAAATGAATTAA
* * ** **
12769874 TATATCATTTAAAATGAGTAA-TAAGCTTTTGATTACATGGTTAACTTAAAATTGTCTTTTGTTG
388 TATATCATTTAAAGTGAGTAACAAAGCTTTTGATGGCATAATTAACTTAAAATTGTCTTTTGTTG
* * * * *
12769938 TCAATAGACAGCATCCACCTCATGTTTCTCAATGCAAACATCCAATTTTGACAGGTTTTAAACAT
453 TCAATGGA-AGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTAAACAT
* *
12770003 AAAGTCCTAATATTTTGATTTA-AA
517 AAAATCCTAAGATTTTGATTTATAA
* * * * * *
12770027 GTCATTTATGACATTATAAATGAATTAATATATAATTTAAAGCGAGTAACAAAGCGTTCGATGGC
1 --CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGC
* **
12770092 ATCATTAACTCAAAATGGTCTTTTCTTATCAATGGATAGCATCCACTT-A-ATGTTCCCAATGCA
64 ATCATTAACT-AAAATGGTCTTTTCTTGTCAACAGATAGCATCCACTTCACAT-TTCCCAATGCA
12770155 AACAT
127 AACAT
12770160 TGATTTTGAT
Statistics
Matches: 1018, Mismatches: 169, Indels: 63
0.81 0.14 0.05
Matches are distributed among these distances:
541 1 0.00
542 53 0.05
543 143 0.14
544 522 0.51
545 186 0.18
546 107 0.11
547 5 0.00
548 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (541 bp):
CATTTATAAGATTATAAATGAATTAATATATCATTTAAAGCAAGTAACAAAGCTTTCAATGGCAT
CATTAACTAAAATGGTCTTTTCTTGTCAACAGATAGCATCCACTTCACATTTCCCAATGCAAACA
TCCAATTATGATAGGTTTTAACAAACAAAATAAAGATTTCAATTTATAATCAATTATAAAATTAT
AAATGAATTAATATATCATTTAAAGCAAGTAAAAAGCTTTTGATGGCTTGATTAACTTAAAATTG
TCTTTTCTTGTCAATTGATAGCATCCACTTCACATTTCCGAATGCAAACATCCAATTATGATAGG
TTTTAACCATAATGTCCCAAGATTTTGATTTATAATCATTTATAAGATTATAAATGAATTAATAT
ATCATTTAAAGTGAGTAACAAAGCTTTTGATGGCATAATTAACTTAAAATTGTCTTTTGTTGTCA
ATGGAAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAGGTTTTAAACATAAAA
TCCTAAGATTTTGATTTATAA
Found at i:12770283 original size:148 final size:149
Alignment explanation
Indices: 12770041--12770308 Score: 378
Period size: 148 Copynumber: 1.8 Consensus size: 149
12770031 TTTATGACAT
* *
12770041 TATAAATGAATTAATATATAATTTAAAGCGAGTAACAAAGCGTTCGATGGCATCATTAACTCAAA
1 TATAAATGAATTAATATATAATTCAAAGCAAGTAACAAAGCGTTCGATGGCATCATTAACTCAAA
* *
12770106 ATGGTCTTTTCTTATCAATGGATAGCATCCACTTAATG-TTCCCAATGCAAACATTGATTTTGAT
66 ATGGTCCTTTCTTATCAATGGATAACATCCACTTAATGTTTCCCAATGCAAACATTGATTTTGAT
12770170 TTGTAACCATTTGTAAAAG
131 TTGTAACCATTTGTAAAAG
* * * * *
12770189 TATAAATGAATTAATATATCATTCATAAG-AAGTAACAAAGCTTTCGATGGCATTATTAATTTAA
1 TATAAATGAATTAATATATAATTCA-AAGCAAGTAACAAAGCGTTCGATGGCATCATTAACTCAA
* * * * * *
12770253 AATTGTCCTTTGTTGTCGATGGATAACATCCTCTTTATGTTTCCCAATGCAAACAT
65 AATGGTCCTTTCTTATCAATGGATAACATCCACTTAATGTTTCCCAATGCAAACAT
12770309 CCAATTATGA
Statistics
Matches: 103, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
148 84 0.82
149 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (149 bp):
TATAAATGAATTAATATATAATTCAAAGCAAGTAACAAAGCGTTCGATGGCATCATTAACTCAAA
ATGGTCCTTTCTTATCAATGGATAACATCCACTTAATGTTTCCCAATGCAAACATTGATTTTGAT
TTGTAACCATTTGTAAAAG
Done.