Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 38 of 59
Found at i:13792520 original size:19 final size:19
Alignment explanation
Indices: 13792493--13792535 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
13792483 TATTTTTCAC
13792493 TTTGAGTGC-TACCCAAACCA
1 TTTGAGTGCAT-CCC-AACCA
13792513 TTTG-GTGCATCCCAACCA
1 TTTGAGTGCATCCCAACCA
13792531 TTTGA
1 TTTGA
13792536 ACTTGCTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 9 0.43
19 7 0.33
20 5 0.24
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
TTTGAGTGCATCCCAACCA
Found at i:13792847 original size:78 final size:78
Alignment explanation
Indices: 13792718--13793096 Score: 517
Period size: 78 Copynumber: 4.9 Consensus size: 78
13792708 TCACATCTTC
* * * * * *
13792718 TGTCCCCCAGTCACCGCACTCAGTTTGCTTCGTTGTACTAGTCACAACTGCTGCAACATCTTGTG
1 TGTCCCTCAATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAGCTGCTGCAACATCTTGTG
13792783 TTTTAGATATGCT
66 TTTTAGATATGCT
* * * *
13792796 TGTCCATAAATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAACTGCTGTAACATCTTGTG
1 TGTCCCTCAATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAGCTGCTGCAACATCTTGTG
13792861 TTTTAGATATGCT
66 TTTTAGATATGCT
** *
13792874 TGTCCCTCAATCACAATAGTCAGTTTGCTTCGTTGTACTGGCCACAGCTGCTGCAACATCTTGTG
1 TGTCCCTCAATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAGCTGCTGCAACATCTTGTG
13792939 TTTTAGATATGCT
66 TTTTAGATATGCT
* * ** * **
13792952 TGTCCCCCAATCATAGCACCCAGTTTGCTTCATTGTACTGGTCACAGCTGCTGCAGTATCTTGTG
1 TGTCCCTCAATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAGCTGCTGCAACATCTTGTG
13793017 TTTTAGATATGCT
66 TTTTAGATATGCT
* * * * *
13793030 TGTCCC-CTAATCACAACAGTCATTTTTCTTCGTTGTTCTGGTCACAGCTGCTGCAACATCATGT
1 TGTCCCTC-AATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAGCTGCTGCAACATCTTGT
13793094 GTT
65 GTT
13793097 GCAAATATCA
Statistics
Matches: 264, Mismatches: 36, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
77 1 0.00
78 263 1.00
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (78 bp):
TGTCCCTCAATCACAGCAGTCAGTTTGCTTCGTTGTACTGGTCACAGCTGCTGCAACATCTTGTG
TTTTAGATATGCT
Found at i:13796623 original size:117 final size:118
Alignment explanation
Indices: 13796392--13796644 Score: 400
Period size: 117 Copynumber: 2.2 Consensus size: 118
13796382 AACAAGAGGC
* * * * * *
13796392 GAATTGCACAAGTCATGCGCCACCGCTCTCGCGATATATAACAACAGGTCACTTAACATATAAAA
1 GAATTGCACAAGTCACGCGCCACCACTCTCGCAATACATAACAACAGGTAACGTAACATATAAAA
13796457 ACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACAT
66 ACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACAT
* * *
13796510 GAATTGCACAAGTCACGTGCCACCATTCTCGCAATACATAACAACAGGTAACGTAATATAT-AAA
1 GAATTGCACAAGTCACGCGCCACCACTCTCGCAATACATAACAACAGGTAACGTAACATATAAAA
*
13796574 ACTAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACAT
66 ACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACAT
*
13796627 GAATTGCACAACTCACGC
1 GAATTGCACAAGTCACGC
13796645 TATAACAGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
117 71 0.58
118 52 0.42
ACGTcount: A:0.43, C:0.27, G:0.13, T:0.17
Consensus pattern (118 bp):
GAATTGCACAAGTCACGCGCCACCACTCTCGCAATACATAACAACAGGTAACGTAACATATAAAA
ACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACAT
Found at i:13796691 original size:117 final size:117
Alignment explanation
Indices: 13796454--13796672 Score: 305
Period size: 117 Copynumber: 1.9 Consensus size: 117
13796444 TTAACATATA
13796454 AAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCAC
1 AAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCAC
* * * * ** * *
13796519 AAGTCACGTGCCACCATTCTCGCAATACATAACAACAGGTAACGTAATATAT
66 AACTCACGTGACAACAGTAACGCAATACATAAAAACAGGTAACGTAATACAT
*
13796571 AAAACTAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCAC
1 AAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCAC
* * *
13796636 AACTCACGCT-ATAACAGGTAACGTAATATATAAAAAC
66 AACTCACG-TGACAACA-GTAACGCAATACATAAAAAC
13796673 CAGTCACGCA
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
117 74 0.83
118 15 0.17
ACGTcount: A:0.47, C:0.25, G:0.11, T:0.17
Consensus pattern (117 bp):
AAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCAC
AACTCACGTGACAACAGTAACGCAATACATAAAAACAGGTAACGTAATACAT
Found at i:13796698 original size:214 final size:211
Alignment explanation
Indices: 13796434--13796960 Score: 677
Period size: 214 Copynumber: 2.4 Consensus size: 211
13796424 GATATATAAC
* * * *
13796434 AACAGGTCACTTAACATATAAAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCA
1 AACAGGTAACGTAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
*
13796499 AAACAACACATGAATTGCACAAGTCACGTGCCACCATTCTCGCAATACATAACAACAGGTAACGT
66 AAACAACACATGAATTGCACAAGTCACGTGCCACCA--CT--CAA-AC-T-ACAACAGGTAACGC
* *
13796564 AATATAT-AAAACTAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACATG
124 AATATATAAAAACCAGTCACGCAAGCCTAAAAAACTACTAAACAAAAGCCTC-AAACAACACATG
13796628 AATTGCACAA-C-T-CA-CGCTAT
188 AATTGCACAAGCATCCACCGCTAT
13796648 AACAGGTAACGTAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
1 AACAGGTAACGTAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
* * *
13796713 AAACAACACATGAATTGCACAAGTCACGTGTCACCACTCAAGCTACAACAGGTAATGCAATATAT
66 AAACAACACATGAATTGCACAAGTCACGTGCCACCACTCAAACTACAACAGGTAACGCAATATAT
* * *
13796778 AAAAACCAGTCATGCGAGCCTAAAAAACTACTAAACAAAAGCCTCAAACAATACATGAATTGCAC
131 AAAAACCAGTCACGCAAGCCTAAAAAACTACTAAACAAAAGCCTCAAACAACACATGAATTGCAC
13796843 AAGTCATGCACCACCACTCTCGCTAT
196 AAG-CAT------CCA--C-CGCTAT
* *
13796869 AACAGGTAACGCAATATATAAAAACCAGTCACGCACTGCCTAAAAAACTACTGAACAAAACCCTC
1 AACAGGTAACGTAATATATAAAAACCAGTCACGCA-TGCCTAAAAAACTACTGAACAAAAGCCTC
* * * *
13796934 AGAACAACATATGAATTGTATAAGTCA
65 AAAACAACACATGAATTGCACAAGTCA
13796961 GTCACGCACC
Statistics
Matches: 278, Mismatches: 19, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
207 40 0.14
208 41 0.15
209 2 0.01
210 4 0.01
212 2 0.01
214 96 0.35
217 2 0.01
221 40 0.14
222 51 0.18
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.18
Consensus pattern (211 bp):
AACAGGTAACGTAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
AAACAACACATGAATTGCACAAGTCACGTGCCACCACTCAAACTACAACAGGTAACGCAATATAT
AAAAACCAGTCACGCAAGCCTAAAAAACTACTAAACAAAAGCCTCAAACAACACATGAATTGCAC
AAGCATCCACCGCTAT
Found at i:13796717 original size:97 final size:100
Alignment explanation
Indices: 13796552--13796951 Score: 425
Period size: 111 Copynumber: 3.8 Consensus size: 100
13796542 AATACATAAC
* * *
13796552 AACAGGTAACGTAATATAT-AAAACTAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCA
1 AACAGGTAACGCAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
13796616 AAACAACACATGAATTGCACAAC-T-CA-CGCTAT
66 AAACAACACATGAATTGCACAACGTCCACCGCTAT
*
13796648 AACAGGTAACGTAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
1 AACAGGTAACGCAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
*
13796713 AAACAACACATGAATTGCACAAGTCACGTGTCACCACTCAAGCTAC
66 AAACAACACATGAATTGCAC-A---AC--GT--CCAC-C--GCTAT
* * *
13796759 AACAGGTAATGCAATATATAAAAACCAGTCATGCGA-GCCTAAAAAACTACTAAACAAAAGCCTC
1 AACAGGTAACGCAATATATAAAAACCAGTCACGC-ATGCCTAAAAAACTACTGAACAAAAGCCTC
* *
13796823 -AAACAATACATGAATTGCACAAGTCATGCACCACCACTCTCGCTAT
65 AAAACAACACATGAATTGCACAA--C--G----TCCA--C-CGCTAT
*
13796869 AACAGGTAACGCAATATATAAAAACCAGTCACGCACTGCCTAAAAAACTACTGAACAAAACCCTC
1 AACAGGTAACGCAATATATAAAAACCAGTCACGCA-TGCCTAAAAAACTACTGAACAAAAGCCTC
* *
13796934 AGAACAACATATGAATTG
65 AAAACAACACATGAATTG
13796952 TATAAGTCAG
Statistics
Matches: 259, Mismatches: 18, Indels: 38
0.82 0.06 0.12
Matches are distributed among these distances:
96 19 0.07
97 63 0.24
98 1 0.00
101 2 0.01
104 1 0.00
106 1 0.00
107 2 0.01
108 3 0.01
109 3 0.01
110 58 0.22
111 88 0.34
112 18 0.07
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.18
Consensus pattern (100 bp):
AACAGGTAACGCAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAACAAAAGCCTCA
AAACAACACATGAATTGCACAACGTCCACCGCTAT
Found at i:13796799 original size:111 final size:111
Alignment explanation
Indices: 13796637--13796960 Score: 463
Period size: 111 Copynumber: 2.9 Consensus size: 111
13796627 GAATTGCACA
*
13796637 ACTCACGCTATAACAGGTAACGTAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAA
1 ACTCACGCTATAACAGGTAACGCAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAA
***
13796702 CAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGTGTCACC
66 CAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCACCACC
* * * * *
13796748 ACTCAAGCTACAACAGGTAATGCAATATATAAAAACCAGTCATGCGA-GCCTAAAAAACTACTAA
1 ACTCACGCTATAACAGGTAACGCAATATATAAAAACCAGTCACGC-ATGCCTAAAAAACTACTGA
* *
13796812 ACAAAAGCCTC-AAACAATACATGAATTGCACAAGTCATGCACCACC
65 ACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCACCACC
*
13796858 ACTCTCGCTATAACAGGTAACGCAATATATAAAAACCAGTCACGCACTGCCTAAAAAACTACTGA
1 ACTCACGCTATAACAGGTAACGCAATATATAAAAACCAGTCACGCA-TGCCTAAAAAACTACTGA
* * * * *
13796923 ACAAAACCCTCAGAACAACATATGAATTGTATAAGTCA
65 ACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCA
13796961 GTCACGCACC
Statistics
Matches: 186, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
109 1 0.01
110 70 0.38
111 93 0.50
112 22 0.12
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (111 bp):
ACTCACGCTATAACAGGTAACGCAATATATAAAAACCAGTCACGCATGCCTAAAAAACTACTGAA
CAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCACCACC
Found at i:13797632 original size:30 final size:30
Alignment explanation
Indices: 13797596--13797655 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
13797586 CCCCTGCTGG
13797596 AATATGTGCAACTGGTCCCTCACACTCAAA
1 AATATGTGCAACTGGTCCCTCACACTCAAA
* * *
13797626 AATATGTTCAATTGGTCCCTCAGACTCAAA
1 AATATGTGCAACTGGTCCCTCACACTCAAA
13797656 GGCACTTCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (30 bp):
AATATGTGCAACTGGTCCCTCACACTCAAA
Found at i:13798364 original size:87 final size:88
Alignment explanation
Indices: 13798237--13798436 Score: 303
Period size: 88 Copynumber: 2.3 Consensus size: 88
13798227 TACAAACAGG
* *
13798237 TCACGCAATGCTCAACAAATATTTAGTCACGTAATGCCTGTCACGCAACGCT-AACAAATATTCA
1 TCACGCAATGCTCAACAAATATTCAGTCACGTAATACCTGTCACGCAACGCTCAACAAATATTCA
13798301 GTCACATAATGCCTATAAAAAAC
66 GTCACATAATGCCTATAAAAAAC
* * * *
13798324 TCACTCAATGCTCAACAAATATTCAGTCACGTATTACCTGTCATGCAACGCTCAACATATATTCA
1 TCACGCAATGCTCAACAAATATTCAGTCACGTAATACCTGTCACGCAACGCTCAACAAATATTCA
* *
13798389 GTCACGTAATGCCTATAAAGAAC
66 GTCACATAATGCCTATAAAAAAC
* *
13798412 TCACGCAGTGCTCAATAAATATTCA
1 TCACGCAATGCTCAACAAATATTCA
13798437 AGCACCTAAT
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
87 47 0.47
88 54 0.53
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (88 bp):
TCACGCAATGCTCAACAAATATTCAGTCACGTAATACCTGTCACGCAACGCTCAACAAATATTCA
GTCACATAATGCCTATAAAAAAC
Found at i:13798432 original size:88 final size:87
Alignment explanation
Indices: 13798213--13798436 Score: 304
Period size: 87 Copynumber: 2.6 Consensus size: 87
13798203 AGGTAGCTAA
* * * ** * *
13798213 AGTCACGCAATGCCTACAAACAGGTCACGCAATGCTCAACAAATATTTAGTCACGTAATGCCTGT
1 AGTCACGTAATGCCTATAAAAAACTCACGCAATGCTCAACAAATATTCAGTCACGTAATACCTGT
13798278 CACGCAACGCTAACAAATATTC
66 CACGCAACGCTAACAAATATTC
* * *
13798300 AGTCACATAATGCCTATAAAAAACTCACTCAATGCTCAACAAATATTCAGTCACGTATTACCTGT
1 AGTCACGTAATGCCTATAAAAAACTCACGCAATGCTCAACAAATATTCAGTCACGTAATACCTGT
* *
13798365 CATGCAACGCTCAACATATATTC
66 CACGCAACGCT-AACAAATATTC
* * *
13798388 AGTCACGTAATGCCTATAAAGAACTCACGCAGTGCTCAATAAATATTCA
1 AGTCACGTAATGCCTATAAAAAACTCACGCAATGCTCAACAAATATTCA
13798437 AGCACCTAAT
Statistics
Matches: 119, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
87 65 0.55
88 54 0.45
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (87 bp):
AGTCACGTAATGCCTATAAAAAACTCACGCAATGCTCAACAAATATTCAGTCACGTAATACCTGT
CACGCAACGCTAACAAATATTC
Found at i:13802266 original size:8 final size:8
Alignment explanation
Indices: 13802253--13802279 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
13802243 TATCAACTTT
13802253 TAATTTTA
1 TAATTTTA
13802261 TAATTTTA
1 TAATTTTA
13802269 TAATTTTA
1 TAATTTTA
13802277 TAA
1 TAA
13802280 GTACAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TAATTTTA
Found at i:13803527 original size:3 final size:3
Alignment explanation
Indices: 13803512--13803547 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
13803502 TTATAAAAGC
*
13803512 ATA ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13803548 TTATTATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:13803991 original size:108 final size:108
Alignment explanation
Indices: 13803797--13804015 Score: 366
Period size: 108 Copynumber: 2.0 Consensus size: 108
13803787 CAATTAGTAA
*
13803797 AAACATATCAATTAGGGGATCCTCAGGTAGGTCTAATATAGCCTGTAGGCTCTCTCTCTCTTAGA
1 AAACATATCAATTAGGGGATCCTCAGGTAGGTCTAATATAGCCTATAGGCTCTCTCTCTCTTAGA
* * * *
13803862 TCAATAATATCATCACTTACTCGTGAGAACTCTTCATGTCACC
66 TCAATAATATCAACACCTACTCGTGAGAACTCTGCACGTCACC
* * *
13803905 AAACATATCAATTAGGGGATCCTCGGGTAGGTCTAATATAGCCTATAGGCTTTCTTTCTCTTAGA
1 AAACATATCAATTAGGGGATCCTCAGGTAGGTCTAATATAGCCTATAGGCTCTCTCTCTCTTAGA
13803970 TCAATAATATCAACACCTACTCGTGAGAACTCTGCACGTCACC
66 TCAATAATATCAACACCTACTCGTGAGAACTCTGCACGTCACC
13804013 AAA
1 AAA
13804016 TATAAGTCGG
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 103 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (108 bp):
AAACATATCAATTAGGGGATCCTCAGGTAGGTCTAATATAGCCTATAGGCTCTCTCTCTCTTAGA
TCAATAATATCAACACCTACTCGTGAGAACTCTGCACGTCACC
Found at i:13804590 original size:28 final size:29
Alignment explanation
Indices: 13804549--13804608 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
13804539 GTCTATGGGC
* *
13804549 AATTTTTCAGTTTT-TGGGGCAAAAATGT
1 AATTTTTCACTTTTAGGGGGCAAAAATGT
* *
13804577 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCACTTTTA-GGGGGCAAAAATGT
13804607 AA
1 AA
13804609 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38
Consensus pattern (29 bp):
AATTTTTCACTTTTAGGGGGCAAAAATGT
Found at i:13807230 original size:60 final size:57
Alignment explanation
Indices: 13807165--13807395 Score: 239
Period size: 60 Copynumber: 3.9 Consensus size: 57
13807155 ACCTAAGCAA
* * * *
13807165 GGGAACTCCCCATGCTACCAAATATGAGTCGGGGCTTTAGGTCTCCTTTTACCTAATT
1 GGGAACTCCCCATGCCACCAAATATGAGTCGAGGCTTCAGGTC-CCTTTTACCTACTT
* * *
13807223 GAAGGAACTTCCCATGCCCCCAAATATGAGTCGAGGCTTCAAGTCCCCTTTTACCTACTCGT
1 G--GGAACTCCCCATGCCACCAAATATGAGTCGAGGCTTCAGGT-CCCTTTTACCTACT--T
* * * *
13807285 GGGAACTTCTCATGTCACCAAATATGAGTCAAGGCTTCAGGTCCCTTTTTACCTACTCAT
1 GGGAACTCCCCATGCCACCAAATATGAGTCGAGGCTTCAGGTCCC-TTTTACCTACT--T
* *
13807345 GGGAACTCCCCACGCCACCAAATAT-AGGTCGAAGCTTCAGGTCCTCTTTTA
1 GGGAACTCCCCATGCCACCAAATATGA-GTCGAGGCTTCAGGTCC-CTTTTA
13807396 TTATCAATTA
Statistics
Matches: 146, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
58 1 0.01
59 4 0.03
60 137 0.94
61 2 0.01
62 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (57 bp):
GGGAACTCCCCATGCCACCAAATATGAGTCGAGGCTTCAGGTCCCTTTTACCTACTT
Found at i:13807366 original size:120 final size:119
Alignment explanation
Indices: 13807141--13807395 Score: 275
Period size: 120 Copynumber: 2.1 Consensus size: 119
13807131 GGTCGTGACA
* ** *
13807141 TCAAGTCCCCCTTTACCTAAGCAAGGGAACTCCCCATGCTACCAAATATGAGTCGGGGCTTTAGG
1 TCAAGTCCCCTTTTACCTAAGCAAGGGAACTCCCCATGCTACCAAATATGAGTCAAGGCTTCAGG
* * * *
13807206 TCTCCTTTTACCTAATTGAAGGAACTTCCCATGCCCCCAAATAT-GAGTCGAGGCT
66 TCTCCTTTTACCTAATTG-AGGAACTCCCCACGCCACCAAATATAG-GTCGAAGCT
** ** * *
13807261 TCAAGTCCCCTTTTACCTACTCGTGGGAACTTCTCATG-TCACCAAATATGAGTCAAGGCTTCAG
1 TCAAGTCCCCTTTTACCTAAGCAAGGGAACTCCCCATGCT-ACCAAATATGAGTCAAGGCTTCAG
*
13807325 GTC-CCTTTTTACCTACTCATG-GGAACTCCCCACGCCACCAAATATAGGTCGAAGCT
65 GTCTCC-TTTTACCTAAT--TGAGGAACTCCCCACGCCACCAAATATAGGTCGAAGCT
* *
13807381 TCAGGTCCTCTTTTA
1 TCAAGTCCCCTTTTA
13807396 TTATCAATTA
Statistics
Matches: 113, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
119 3 0.03
120 107 0.95
121 1 0.01
122 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (119 bp):
TCAAGTCCCCTTTTACCTAAGCAAGGGAACTCCCCATGCTACCAAATATGAGTCAAGGCTTCAGG
TCTCCTTTTACCTAATTGAGGAACTCCCCACGCCACCAAATATAGGTCGAAGCT
Found at i:13810722 original size:12 final size:11
Alignment explanation
Indices: 13810695--13810769 Score: 61
Period size: 11 Copynumber: 7.2 Consensus size: 11
13810685 AACCAAGCTT
13810695 TTTCTTCCTTTC
1 TTTC-TCCTTTC
* *
13810707 TCTCT-TTTTC
1 TTTCTCCTTTC
13810717 TTTCTCCTTTC
1 TTTCTCCTTTC
*
13810728 TTTCT--TTCC
1 TTTCTCCTTTC
*
13810737 CTTCTCCTTTC
1 TTTCTCCTTTC
*
13810748 TTTCT--GTTC
1 TTTCTCCTTTC
13810757 TTTCTCCTTTC
1 TTTCTCCTTTC
13810768 TT
1 TT
13810770 CTAATTGATC
Statistics
Matches: 48, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
9 15 0.31
10 8 0.17
11 22 0.46
12 3 0.06
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.65
Consensus pattern (11 bp):
TTTCTCCTTTC
Found at i:13810743 original size:20 final size:20
Alignment explanation
Indices: 13810718--13810769 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
13810708 CTCTTTTTCT
13810718 TTCTCCTTTCTTTCT-TTCCC
1 TTCTCCTTTCTTTCTGTT-CC
*
13810738 TTCTCCTTTCTTTCTGTTCT
1 TTCTCCTTTCTTTCTGTTCC
13810758 TTCTCCTTTCTT
1 TTCTCCTTTCTT
13810770 CTAATTGATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.00, C:0.35, G:0.02, T:0.63
Consensus pattern (20 bp):
TTCTCCTTTCTTTCTGTTCC
Found at i:13810757 original size:16 final size:16
Alignment explanation
Indices: 13810713--13810751 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
13810703 TTTCTCTCTT
13810713 TTTCTTTCTCCTT-T-C
1 TTTCTTTC-CCTTCTCC
13810728 TTTCTTTCCCTTCTCC
1 TTTCTTTCCCTTCTCC
13810744 TTTCTTTC
1 TTTCTTTC
13810752 TGTTCTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 9 0.41
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTCTTTCCCTTCTCC
Found at i:13814887 original size:30 final size:30
Alignment explanation
Indices: 13814851--13814907 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
13814841 GTAATAAGGG
13814851 TTTATTTGACTCAAAATAAAAGTATAAAAA
1 TTTATTTGACTCAAAATAAAAGTATAAAAA
**
13814881 TTTATTTGGTTCAAAATAAAAGTATAA
1 TTTATTTGACTCAAAATAAAAGTATAA
13814908 GGATTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (30 bp):
TTTATTTGACTCAAAATAAAAGTATAAAAA
Found at i:13821360 original size:28 final size:27
Alignment explanation
Indices: 13821315--13821367 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
13821305 TGTCCTAGTG
** *
13821315 GTGGAAAATTACTGTTTTGCCCCTAGA
1 GTGGAAAATTACCATTTTACCCCTAGA
13821342 GTGGCAAAATTACCATTTTACCCCTA
1 GTGG-AAAATTACCATTTTACCCCTA
13821368 TGCTTCAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (27 bp):
GTGGAAAATTACCATTTTACCCCTAGA
Found at i:13821882 original size:21 final size:21
Alignment explanation
Indices: 13821830--13821885 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
13821820 TAATTCATTA
13821830 TATTTAAATTTAAATAAAAAT
1 TATTTAAATTTAAATAAAAAT
* * ** *
13821851 TAATTACATTTAAATTTAATT
1 TATTTAAATTTAAATAAAAAT
13821872 TATTTAAATTTAAA
1 TATTTAAATTTAAA
13821886 AGAAATATCC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TATTTAAATTTAAATAAAAAT
Found at i:13823787 original size:2 final size:2
Alignment explanation
Indices: 13823780--13823811 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13823770 AACTACTGAA
13823780 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
13823812 ATTATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:13823832 original size:13 final size:13
Alignment explanation
Indices: 13823814--13823844 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
13823804 CTCTCTCTAT
13823814 TATATATATATAA
1 TATATATATATAA
*
13823827 TATATATATATAT
1 TATATATATATAA
13823840 TATAT
1 TATAT
13823845 GATAGTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATATATATATAA
Found at i:13823834 original size:15 final size:15
Alignment explanation
Indices: 13823814--13823844 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13823804 CTCTCTCTAT
13823814 TATATATATATAATA
1 TATATATATATAATA
*
13823829 TATATATATATTATA
1 TATATATATATAATA
13823844 T
1 T
13823845 GATAGTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATATATATATAATA
Found at i:13825113 original size:8 final size:8
Alignment explanation
Indices: 13825102--13825139 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
13825092 TATATTAATA
13825102 AATTATAG
1 AATTATAG
13825110 AATTATAG
1 AATTATAG
*
13825118 AATTATTG
1 AATTATAG
13825126 AATTATAG
1 AATTATAG
13825134 AATTAT
1 AATTAT
13825140 GCATTGTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (8 bp):
AATTATAG
Found at i:13825861 original size:35 final size:33
Alignment explanation
Indices: 13825821--13825907 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
13825811 TTTTAATATC
* *
13825821 ATATATTTTATTGTT-ATTTCTTATTATAATCTT
1 ATATATATTATT-TTCATTTCTTAATATAATCTT
*
13825854 ATATATATTATTTTCATTTCTTAATATAATTTT
1 ATATATATTATTTTCATTTCTTAATATAATCTT
* *
13825887 TTATATTATATATTTTAATTT
1 ATATA-TAT-TATTTTCATTT
13825908 AATTTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.04
33 31 0.67
34 3 0.07
35 10 0.22
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (33 bp):
ATATATATTATTTTCATTTCTTAATATAATCTT
Found at i:13831925 original size:21 final size:21
Alignment explanation
Indices: 13831873--13831934 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
13831863 TAATCTATTA
*
13831873 TATTTAAATTTATATAAAAAT
1 TATTTAAATTTAAATAAAAAT
* * ** *
13831894 TAATTACATTTAAATTTAATT
1 TATTTAAATTTAAATAAAAAT
13831915 TATTTAAATTTAAA-AAAAAT
1 TATTTAAATTTAAATAAAAAT
13831935 ATCTTATCTC
Statistics
Matches: 30, Mismatches: 11, Indels: 1
0.71 0.26 0.02
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TATTTAAATTTAAATAAAAAT
Found at i:13835469 original size:212 final size:211
Alignment explanation
Indices: 13835102--13835525 Score: 830
Period size: 212 Copynumber: 2.0 Consensus size: 211
13835092 TTGTATTTTT
13835102 TAAAGTCTAATTTCAAATATTATATAATACTAATCAATTATATTGTATTTTACTCTGTTTATATT
1 TAAAGTCTAATTTCAAATATTATATAATACTAATCAATTATATTGTATTTTACTCTGTTTATATT
13835167 CATTATTTTTATTTATTTTTAAAAATTTTAAAATTCTAATTTTATTGCTTGTTGATATTGAAGTA
66 CATTATTTTTATTTATTTTTAAAAATTTTAAAATTCTAATTTTATTGCTTGTTGATATTGAAGTA
*
13835232 TTTAATGTTTAACTAAATACTTTTAATTTATTTATATATGAAATTTAATATTAATTCAAATTAAT
131 TTTAATATTTAACTAAATACTTTTAATTTATTTATATATGAAATTTAATATTAATTCAAATTAAT
13835297 TAATTAATTTAAAATA
196 TAATTAATTTAAAATA
13835313 NTAAAGTCTAATTTCAAATATTATATAATACTAATCAATTATATTGTATTTTACTCTGTTTATAT
1 -TAAAGTCTAATTTCAAATATTATATAATACTAATCAATTATATTGTATTTTACTCTGTTTATAT
13835378 TCATTATTTTTATTTATTTTTAAAAATTTTAAAATTCTAATTTTATTGCTTGTTGATATTGAAGT
65 TCATTATTTTTATTTATTTTTAAAAATTTTAAAATTCTAATTTTATTGCTTGTTGATATTGAAGT
13835443 ATTTAATATTTAACTAAATACTTTTAATTTATTTATATATGAAATTTAATATTAATTCAAATTAA
130 ATTTAATATTTAACTAAATACTTTTAATTTATTTATATATGAAATTTAATATTAATTCAAATTAA
13835508 TTAATTAATTTAAAATA
195 TTAATTAATTTAAAATA
13835525 T
1 T
13835526 TATTATAAAA
Statistics
Matches: 211, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
211 1 0.00
212 210 1.00
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.51
Consensus pattern (211 bp):
TAAAGTCTAATTTCAAATATTATATAATACTAATCAATTATATTGTATTTTACTCTGTTTATATT
CATTATTTTTATTTATTTTTAAAAATTTTAAAATTCTAATTTTATTGCTTGTTGATATTGAAGTA
TTTAATATTTAACTAAATACTTTTAATTTATTTATATATGAAATTTAATATTAATTCAAATTAAT
TAATTAATTTAAAATA
Found at i:13837005 original size:60 final size:59
Alignment explanation
Indices: 13836743--13837017 Score: 254
Period size: 60 Copynumber: 4.6 Consensus size: 59
13836733 CTCTTCACGT
* * * ** *
13836743 CACCAAATATAAGTCGGGGTTTTGAGTCCCCCTTTACTTACTCGAGGGAACTCCCCATGC
1 CACCAAATATGAGTCGAGGCTTCAAGTCCCCTTTTACTTACTC-AGGGAACTCCCCATGC
* * * * * * *
13836803 TACCAAATATGAGTCG-GGCTTTAGGTATCCC-TTTACCTACTTGAGGGAACTTCCCATGC
1 CACCAAATATGAGTCGAGGCTTCAAGT-CCCCTTTTACTTAC-TCAGGGAACTCCCCATGC
* *
13836862 CCCCAAATATGAGTCGAGGCTTCAAGTCCCCTTTTAGC-TACTCATGGGAACTCCCCATGT
1 CACCAAATATGAGTCGAGGCTTCAAGTCCCCTTTTA-CTTACTCA-GGGAACTCCCCATGC
* * * *
13836922 CACCAAATATGAGTCAAGTCTTCAGGTCCCCTTTTACTTACTCATGGGAATTCCCCATGC
1 CACCAAATATGAGTCGAGGCTTCAAGTCCCCTTTTACTTACTCA-GGGAACTCCCCATGC
* *
13836982 CACCAAATAT-AGGTC-AGAACTTCAAGTCCTCTTTTA
1 CACCAAATATGA-GTCGAG-GCTTCAAGTCCCCTTTTA
13837018 TTATCAATTA
Statistics
Matches: 180, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
59 53 0.29
60 126 0.70
61 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (59 bp):
CACCAAATATGAGTCGAGGCTTCAAGTCCCCTTTTACTTACTCAGGGAACTCCCCATGC
Found at i:13838551 original size:19 final size:19
Alignment explanation
Indices: 13838527--13838564 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
13838517 CCATTTGACT
*
13838527 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATATGAG
13838546 TATTGGAGTATGATATGAG
1 TATTGGAGTATGATATGAG
13838565 GTTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (19 bp):
TATTGGAGTATGATATGAG
Found at i:13842119 original size:20 final size:20
Alignment explanation
Indices: 13842081--13842119 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13842071 TTTATAGTTA
***
13842081 GAGAAGCTTTGTGGTCGTTG
1 GAGAAGCTTTGTAACCGTTG
13842101 GAGAAGCTTTGTAACCGTT
1 GAGAAGCTTTGTAACCGTT
13842120 AAGGATATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.13, G:0.33, T:0.33
Consensus pattern (20 bp):
GAGAAGCTTTGTAACCGTTG
Found at i:13843322 original size:2 final size:2
Alignment explanation
Indices: 13843312--13843345 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
13843302 TATAACACAC
* *
13843312 AT AT CT AT AT AT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13843346 CCATCACCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13843437 original size:43 final size:43
Alignment explanation
Indices: 13843389--13843541 Score: 213
Period size: 42 Copynumber: 3.6 Consensus size: 43
13843379 CTCATGTGCG
* *
13843389 CTCCCTACTCGCACATAGCTGGGTCAGCATCGACTTATGCGTA
1 CTCCCTACTCGCACATAGCTGGGTCAGCATCGGCTTATGCGCA
*
13843432 CTCCCTACTCGCACATAGCCGGGTCAGCATCGGCTTATGCGCA
1 CTCCCTACTCGCACATAGCTGGGTCAGCATCGGCTTATGCGCA
* * *
13843475 CTCCC-ACTCGCACATAG-TAGGGTTAGCATCGGTTTATGCACA
1 CTCCCTACTCGCACATAGCT-GGGTCAGCATCGGCTTATGCGCA
*
13843517 CT-CCTACTCGCACATAGCTAGGTCA
1 CTCCCTACTCGCACATAGCTGGGTCA
13843542 ATATTAATAC
Statistics
Matches: 98, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
41 2 0.02
42 50 0.51
43 46 0.47
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.24
Consensus pattern (43 bp):
CTCCCTACTCGCACATAGCTGGGTCAGCATCGGCTTATGCGCA
Found at i:13843503 original size:42 final size:44
Alignment explanation
Indices: 13843389--13843538 Score: 211
Period size: 43 Copynumber: 3.5 Consensus size: 44
13843379 CTCATGTGCG
* *
13843389 CTCCCTACTCGCACATAGCT-GGGTCAGCATCGACTTATGCGTA
1 CTCCCTACTCGCACATAGCTAGGGTCAGCATCGGCTTATGCGCA
*
13843432 CTCCCTACTCGCACATAGC-CGGGTCAGCATCGGCTTATGCGCA
1 CTCCCTACTCGCACATAGCTAGGGTCAGCATCGGCTTATGCGCA
* * *
13843475 CTCCC-ACTCGCACATAG-TAGGGTTAGCATCGGTTTATGCACA
1 CTCCCTACTCGCACATAGCTAGGGTCAGCATCGGCTTATGCGCA
13843517 CT-CCTACTCGCACATAGCTAGG
1 CTCCCTACTCGCACATAGCTAGG
13843539 TCAATATTAA
Statistics
Matches: 97, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
41 2 0.02
42 46 0.47
43 49 0.51
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.24
Consensus pattern (44 bp):
CTCCCTACTCGCACATAGCTAGGGTCAGCATCGGCTTATGCGCA
Found at i:13844945 original size:21 final size:21
Alignment explanation
Indices: 13844921--13844980 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
13844911 CTTATAAGTC
13844921 AGGTATCAAGACTTTGAAACT
1 AGGTATCAAGACTTTGAAACT
*
13844942 AGGTATCAAGATTTTGAAACT
1 AGGTATCAAGACTTTGAAACT
13844963 AGGTATCAAGACTTTGAA
1 AGGTATCAAGACTTTGAA
13844981 TCCATGTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (21 bp):
AGGTATCAAGACTTTGAAACT
Found at i:13844989 original size:21 final size:21
Alignment explanation
Indices: 13844902--13844992 Score: 103
Period size: 21 Copynumber: 4.3 Consensus size: 21
13844892 ATTGTGTCGA
**
13844902 GTATCAAGACTTAT-AAGTCAG
1 GTATCAAGACTT-TGAAACCAG
*
13844923 GTATCAAGACTTTGAAACTAG
1 GTATCAAGACTTTGAAACCAG
* *
13844944 GTATCAAGATTTTGAAACTAG
1 GTATCAAGACTTTGAAACCAG
* *
13844965 GTATCAAGACTTTGAATCCAT
1 GTATCAAGACTTTGAAACCAG
13844986 GTATCAA
1 GTATCAA
13844993 AACTATGTGA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
20 1 0.02
21 60 0.98
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (21 bp):
GTATCAAGACTTTGAAACCAG
Found at i:13854203 original size:20 final size:20
Alignment explanation
Indices: 13854164--13854203 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
13854154 CTATAAATAT
*
13854164 CTCATTTCTCCGGCAACTTC
1 CTCATTTCTCCAGCAACTTC
* *
13854184 CTCATTTTTCCAGCAGCTTC
1 CTCATTTCTCCAGCAACTTC
13854204 TTGTTTTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.38, G:0.10, T:0.38
Consensus pattern (20 bp):
CTCATTTCTCCAGCAACTTC
Found at i:13854949 original size:38 final size:38
Alignment explanation
Indices: 13854835--13854954 Score: 161
Period size: 38 Copynumber: 3.2 Consensus size: 38
13854825 GGAGTGTGGG
13854835 TGATGATATTGCTTGTGCATGATGTGGGGGGATGCACA
1 TGATGATATTGCTTGTGCATGATGTGGGGGGATGCACA
** * *
13854873 CAATGATAATGCTTGTGCACGATGTGGGGGGATGCACA
1 TGATGATATTGCTTGTGCATGATGTGGGGGGATGCACA
* * *
13854911 TGATGGTATTAGC-TGTGCATGATGTAGGGGAATGCACA
1 TGATGATATT-GCTTGTGCATGATGTGGGGGGATGCACA
13854949 TGATGA
1 TGATGA
13854955 CTTCGGCTAT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
38 67 0.97
39 2 0.03
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.28
Consensus pattern (38 bp):
TGATGATATTGCTTGTGCATGATGTGGGGGGATGCACA
Found at i:13859185 original size:2 final size:2
Alignment explanation
Indices: 13859178--13859216 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
13859168 ATGCGCATAC
13859178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13859217 GTAGTAGNNN
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13860959 original size:38 final size:38
Alignment explanation
Indices: 13860916--13861036 Score: 136
Period size: 38 Copynumber: 3.2 Consensus size: 38
13860906 GGAGTGTGAG
* *
13860916 TGATGATATTACTTGTGCACGATGTGGGGTGATGCATA
1 TGATGATATTACTTGTGCACGATGTGGGGGGATGCACA
* * * *
13860954 TGATGATAAATT-TTTGTGAATGATGTGGGGGGACGCACA
1 TGATGAT--ATTACTTGTGCACGATGTGGGGGGATGCACA
* *
13860993 TGATGGTATTAGTTGTGCACGATGTGGGGGGATGCACA
1 TGATGATATTACTTGTGCACGATGTGGGGGGATGCACA
*
13861031 CGATGA
1 TGATGA
13861037 CTCCTGCTAT
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
37 3 0.04
38 34 0.51
39 27 0.40
40 3 0.04
ACGTcount: A:0.25, C:0.10, G:0.35, T:0.31
Consensus pattern (38 bp):
TGATGATATTACTTGTGCACGATGTGGGGGGATGCACA
Found at i:13877366 original size:13 final size:13
Alignment explanation
Indices: 13877348--13877372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13877338 TTCCAGAAAA
13877348 TTTATAAAATCAT
1 TTTATAAAATCAT
13877361 TTTATAAAATCA
1 TTTATAAAATCA
13877373 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:13879069 original size:16 final size:16
Alignment explanation
Indices: 13879048--13879080 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13879038 AATCTTATTA
13879048 GAGCACACATTTAGGG
1 GAGCACACATTTAGGG
*
13879064 GAGCACATATTTAGGG
1 GAGCACACATTTAGGG
13879080 G
1 G
13879081 GACCAATCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.33, T:0.21
Consensus pattern (16 bp):
GAGCACACATTTAGGG
Found at i:13881123 original size:20 final size:20
Alignment explanation
Indices: 13881094--13881131 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13881084 CAAAGAATTT
*
13881094 TTAATTGGTTGAAGTTGATC
1 TTAATCGGTTGAAGTTGATC
*
13881114 TTAATCGGTTTAAGTTGA
1 TTAATCGGTTGAAGTTGA
13881132 AGGAAGGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (20 bp):
TTAATCGGTTGAAGTTGATC
Found at i:13885141 original size:62 final size:62
Alignment explanation
Indices: 13885036--13885181 Score: 195
Period size: 62 Copynumber: 2.3 Consensus size: 62
13885026 TAATTGATGT
* * *
13885036 AACCGTGCATGTGCAGAGTGGGCAGTGCATATGCCGATTGAATGACGATGTAGTGACAAC-TAC
1 AACCGTGCATGTGCGGAGT-GGCAGTACATATGCCGATCGAATGACGATGTAGTGAC-ACTTAC
* * *
13885099 AACCGTGCATATGCGGAGTGGCAGTACATATGCCGGTCGAATGACGATGTTGTGACACTTAC
1 AACCGTGCATGTGCGGAGTGGCAGTACATATGCCGATCGAATGACGATGTAGTGACACTTAC
* *
13885161 AACTGTGCATGTGGGGAGTGG
1 AACCGTGCATGTGCGGAGTGG
13885182 GCAATGCACA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
61 2 0.03
62 54 0.74
63 17 0.23
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.23
Consensus pattern (62 bp):
AACCGTGCATGTGCGGAGTGGCAGTACATATGCCGATCGAATGACGATGTAGTGACACTTAC
Found at i:13885262 original size:2 final size:2
Alignment explanation
Indices: 13885255--13885301 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
13885245 CATTCGTGTT
13885255 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13885296 TA TA TA
1 TA TA TA
13885302 CNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:13889974 original size:16 final size:17
Alignment explanation
Indices: 13889952--13889994 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
13889942 CTTATTCATT
13889952 CATTTATGTAT-CCTCA
1 CATTTATGTATACCTCA
* *
13889968 TATTTATGTTTACCTCA
1 CATTTATGTATACCTCA
13889985 CATTTATGTA
1 CATTTATGTA
13889995 GCTTCAATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.49
Consensus pattern (17 bp):
CATTTATGTATACCTCA
Found at i:13903697 original size:2 final size:2
Alignment explanation
Indices: 13903690--13903714 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13903680 TATAATGTTG
13903690 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
13903715 CTATGTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13909960 original size:43 final size:43
Alignment explanation
Indices: 13909899--13910021 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
13909889 CACATTTCAA
* * *
13909899 CATCATTAGCTCATGTGCACTCCTTACTTGCACATAG-CTGGGT
1 CATCATCAGCTCATGTGCACTCCCTACTCGCACATAGCCT-GGT
* * *
13909942 CATCATCGGCTCATGTGCACTCCCTACTCACATATAGCCTGGT
1 CATCATCAGCTCATGTGCACTCCCTACTCGCACATAGCCTGGT
*
13909985 CATCATCAGCAT-ATGTGCACTCCCTACTCGTACATAG
1 CATCATCAGC-TCATGTGCACTCCCTACTCGCACATAG
13910022 TCGAGTCATC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (43 bp):
CATCATCAGCTCATGTGCACTCCCTACTCGCACATAGCCTGGT
Found at i:13910033 original size:43 final size:42
Alignment explanation
Indices: 13909869--13910021 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 42
13909859 TCATTCATCG
* * *** *
13909869 TCATGTGCACTCCCTACTGGCACAT--TTCAACATCATTAGC
1 TCATGTGCACTCCCTACTCGCACATAGCTGGTCATCATCAGC
* * *
13909909 TCATGTGCACTCCTTACTTGCACATAGCTGGGTCATCATCGGC
1 TCATGTGCACTCCCTACTCGCACATAGCT-GGTCATCATCAGC
* *
13909952 TCATGTGCACTCCCTACTCACATATAGCCTGGTCATCATCAGC
1 TCATGTGCACTCCCTACTCGCACATAG-CTGGTCATCATCAGC
*
13909995 AT-ATGTGCACTCCCTACTCGTACATAG
1 -TCATGTGCACTCCCTACTCGCACATAG
13910022 TCGAGTCATC
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
40 23 0.25
42 1 0.01
43 65 0.71
44 3 0.03
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (42 bp):
TCATGTGCACTCCCTACTCGCACATAGCTGGTCATCATCAGC
Found at i:13913071 original size:16 final size:16
Alignment explanation
Indices: 13913050--13913080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13913040 GGGATTGGTC
13913050 CCCCTAAATATGTGCT
1 CCCCTAAATATGTGCT
*
13913066 CCCCTAAATGTGTGC
1 CCCCTAAATATGTGC
13913081 CCTAATAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (16 bp):
CCCCTAAATATGTGCT
Found at i:13917717 original size:73 final size:73
Alignment explanation
Indices: 13917593--13917798 Score: 306
Period size: 73 Copynumber: 2.8 Consensus size: 73
13917583 GAGTAAAATA
*
13917593 GATTGCAAGATAGAGAAGACTTAATCAACTAAGAAGTATGGTTAGCCAGCTAAAAGCTCAAGATC
1 GATTGCAAGATAGAGAAGACTTAATCAACTAAGAAGAATGGTTAGCCAGCTAAAAGCTCAAGATC
13917658 AAAAATTT
66 AAAAATTT
* * *
13917666 GATTGCAAGATAGAGAA-AGCTTAATCAACTAGGAAGAATGGTTAGCTAGCTAAAAGCTCATGAT
1 GATTGCAAGATAGAGAAGA-CTTAATCAACTAAGAAGAATGGTTAGCCAGCTAAAAGCTCAAGAT
13917730 CAAAAATTT
65 CAAAAATTT
* * * * * *
13917739 GATTGGAAGACAAAGAAGACTTAATCGACTAAGAAGAATGGTTAACCAACTAAAAGCTCA
1 GATTGCAAGATAGAGAAGACTTAATCAACTAAGAAGAATGGTTAGCCAGCTAAAAGCTCA
13917799 CTATCTGAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
72 1 0.01
73 117 0.98
74 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (73 bp):
GATTGCAAGATAGAGAAGACTTAATCAACTAAGAAGAATGGTTAGCCAGCTAAAAGCTCAAGATC
AAAAATTT
Found at i:13928585 original size:42 final size:43
Alignment explanation
Indices: 13928470--13928608 Score: 208
Period size: 43 Copynumber: 3.3 Consensus size: 43
13928460 TTATCAGCTC
13928470 ATGCGCACTCCCCACTAGCACATGGCTGGGTCAGCATCGGCTT
1 ATGCGCACTCCCCACTAGCACATGGCTGGGTCAGCATCGGCTT
13928513 ATGCGCACTCCCCACTAGCACATGGCTGGGTCAGCATCGGCTT
1 ATGCGCACTCCCCACTAGCACATGGCTGGGTCAGCATCGGCTT
* ** * * *
13928556 ATGCGCACT-CCTACTAGCACAAAGCTGGGTCATCATCAGCGT
1 ATGCGCACTCCCCACTAGCACATGGCTGGGTCAGCATCGGCTT
*
13928598 ATGCACACTCC
1 ATGCGCACTCC
13928609 TACTTGCACA
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 35 0.40
43 53 0.60
ACGTcount: A:0.22, C:0.35, G:0.23, T:0.21
Consensus pattern (43 bp):
ATGCGCACTCCCCACTAGCACATGGCTGGGTCAGCATCGGCTT
Found at i:13936165 original size:42 final size:42
Alignment explanation
Indices: 13936102--13936200 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
13936092 TTCCCCACTA
* * *
13936102 GCACATAG-CTGGGTCAGCATCGGCTTATGGGCACTTTTACTC
1 GCACATAGTC-GGGTCAGCATCGGCATATGCGCACTCTTACTC
*
13936144 GCACATAGTCGGGTCATCATCGGCATATGCGCACTCTTACTC
1 GCACATAGTCGGGTCAGCATCGGCATATGCGCACTCTTACTC
13936186 GCACATAGTCGGGTC
1 GCACATAGTCGGGTC
13936201 CACATCAACA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 51 0.98
43 1 0.02
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.26
Consensus pattern (42 bp):
GCACATAGTCGGGTCAGCATCGGCATATGCGCACTCTTACTC
Found at i:13947885 original size:68 final size:68
Alignment explanation
Indices: 13947806--13947980 Score: 221
Period size: 68 Copynumber: 2.6 Consensus size: 68
13947796 AAGTTAGTTG
*
13947806 TTGGGTTTTGGTTGATCCCGTGAAAAAACTATTGTTG-TAGGTTATGGTTAAGCC-TTTGAAAAA
1 TTGGGTTTTGGTTGATCCCGTG-AAAAACTATTG-TGAAAGGTTATGGTTAAGCCTTTTGAAAAA
13947869 CCACT
64 CCACT
* * * *
13947874 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTTGAAAAACC
1 TTGGGTTTTGGTTGATCCCGTGAAAAACTATTGTGAAAGGTTATGGTTAAGCCTTTTGAAAAACC
13947939 ACT
66 ACT
* * * *
13947942 TTGAGTTTTAGTTGATCCTG-GTAAAAACTATTATGAAAG
1 TTGGGTTTTGGTTGATCCCGTG-AAAAACTATTGTGAAAG
13947981 ATTTTGGCTG
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
66 2 0.02
67 25 0.27
68 66 0.71
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (68 bp):
TTGGGTTTTGGTTGATCCCGTGAAAAACTATTGTGAAAGGTTATGGTTAAGCCTTTTGAAAAACC
ACT
Found at i:13947993 original size:68 final size:68
Alignment explanation
Indices: 13947856--13947995 Score: 176
Period size: 68 Copynumber: 2.1 Consensus size: 68
13947846 GTTATGGTTA
* * * *
13947856 AGCC-TTTGAAAAACCACTTTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGG
1 AGCCTTTTGAAAAACCACTTTGAGTTTTAGTTGAGCCCGTGAAAAACCATTATGAAAGATTGTGG
*
13947920 TTG
66 CTG
* * * *
13947923 AGCCTTTTGAAAAACCACTTTGAGTTTTAGTTGATCCTG-GTAAAAACTATTATGAAAGATTTTG
1 AGCCTTTTGAAAAACCACTTTGAGTTTTAGTTGAGCCCGTG-AAAAACCATTATGAAAGATTGTG
13947987 GCTG
65 GCTG
13947991 AGCCT
1 AGCCT
13947996 GATAAAAGCC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
67 5 0.08
68 57 0.92
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (68 bp):
AGCCTTTTGAAAAACCACTTTGAGTTTTAGTTGAGCCCGTGAAAAACCATTATGAAAGATTGTGG
CTG
Found at i:13949692 original size:73 final size:73
Alignment explanation
Indices: 13949585--13949785 Score: 303
Period size: 73 Copynumber: 2.8 Consensus size: 73
13949575 TTCTTAAACT
* *
13949585 TTTTAGCTAGCTAACCATTCTTCTTAGTTGATTAAGTCTTCTCTGTCTCGCAATGAAATTTTTGA
1 TTTTAGCTAGCTAACCATTCTTCTTAGTTAATTAAGTCTTCTCTGTCTCGCAATCAAATTTTTGA
*
13949650 TCGTGAGC
66 CCGTGAGC
* * * * *
13949658 TTTTAACTAGCTAACCATTCTTCTTAGTCAATTAAGCCTTCTTTGTCTCACAATCAAATTTTTGA
1 TTTTAGCTAGCTAACCATTCTTCTTAGTTAATTAAGTCTTCTCTGTCTCGCAATCAAATTTTTGA
13949723 CCGTGAGC
66 CCGTGAGC
* * *
13949731 TTTTAGCTAGCTAACGATACTTCTTAGTTAATTAAGTCTTCTCCGTCTCGCAATC
1 TTTTAGCTAGCTAACCATTCTTCTTAGTTAATTAAGTCTTCTCTGTCTCGCAATC
13949786 TACTTTACTC
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (73 bp):
TTTTAGCTAGCTAACCATTCTTCTTAGTTAATTAAGTCTTCTCTGTCTCGCAATCAAATTTTTGA
CCGTGAGC
Found at i:13951434 original size:10 final size:12
Alignment explanation
Indices: 13951409--13951434 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13951399 TTATACACCA
13951409 GTGTTATGAGGT
1 GTGTTATGAGGT
13951421 GTGTTATGAGGT
1 GTGTTATGAGGT
13951433 GT
1 GT
13951435 CTTAGTGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (12 bp):
GTGTTATGAGGT
Found at i:13952482 original size:95 final size:95
Alignment explanation
Indices: 13952319--13952511 Score: 341
Period size: 95 Copynumber: 2.0 Consensus size: 95
13952309 TGAAGCTGAT
*
13952319 GAACATAGGAAAGCTGCTAGAAGAATTGACAAAGCTGATTTAGCCTTTTCTGCTCGAATGAAAAG
1 GAACATAGGAAAGCTGCTAGAAGAATTGACAAAGCTGATTTAGCCTTTTCTGCTCAAATGAAAAG
**
13952384 AAAGGCTCCTGTTGATACTTCAGCAAAGAA
66 AAAGGCTCCTACTGATACTTCAGCAAAGAA
*
13952414 GAACATAGGAAAGTTGCTAGAAGAATTGACAAAGCTGATTTAGCCTTTTCTGCTCAAATGAAAAG
1 GAACATAGGAAAGCTGCTAGAAGAATTGACAAAGCTGATTTAGCCTTTTCTGCTCAAATGAAAAG
*
13952479 AAAGGCTTCTACTGATACTTCAGCAAAGAA
66 AAAGGCTCCTACTGATACTTCAGCAAAGAA
13952509 GAA
1 GAA
13952512 TGTGAGTGAT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (95 bp):
GAACATAGGAAAGCTGCTAGAAGAATTGACAAAGCTGATTTAGCCTTTTCTGCTCAAATGAAAAG
AAAGGCTCCTACTGATACTTCAGCAAAGAA
Found at i:13962868 original size:24 final size:24
Alignment explanation
Indices: 13962837--13962882 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
13962827 AGGTATGTAT
*
13962837 TAATTTTCTTAATTACTTAATTAG
1 TAATTTTCTTAATTACTAAATTAG
*
13962861 TAATTTTCTTTATTACTAAATT
1 TAATTTTCTTAATTACTAAATT
13962883 TATATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (24 bp):
TAATTTTCTTAATTACTAAATTAG
Found at i:13980352 original size:5 final size:5
Alignment explanation
Indices: 13980342--13980366 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
13980332 ATGACATCAA
13980342 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
13980367 TTTAGATGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:13981008 original size:22 final size:22
Alignment explanation
Indices: 13980983--13981043 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
13980973 ATTTAATCAC
*
13980983 TACGTGACTGATTTTTAGGCAT
1 TACGTGATTGATTTTTAGGCAT
* *
13981005 TACGTGATTGGTTTTTAGGTAT
1 TACGTGATTGATTTTTAGGCAT
* *
13981027 TGCATGATTGATTTTTA
1 TACGTGATTGATTTTTA
13981044 AGTAATGCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.21, C:0.08, G:0.23, T:0.48
Consensus pattern (22 bp):
TACGTGATTGATTTTTAGGCAT
Found at i:13981088 original size:23 final size:23
Alignment explanation
Indices: 13981062--13981237 Score: 131
Period size: 26 Copynumber: 7.3 Consensus size: 23
13981052 CTAAGCCACA
* *
13981062 CAATTCCTTACTAACTAGTCATG
1 CAATGCCTTACTAACTAGTCACG
*
13981085 CAATGCCTTACAAACTAGTCACG
1 CAATGCCTTACTAACTAGTCACG
* * **
13981108 TAATGCCTTACTAACAAGTCATA
1 CAATGCCTTACTAACTAGTCACG
*
13981131 CAATACC-TA-TCAACTAGTCACG
1 CAATGCCTTACT-AACTAGTCACG
*
13981153 CAATGCCTTATTAGAAACTAGTCACG
1 CAATGCCTTACT---AACTAGTCACG
* * *
13981179 CAATGCGTTATCAAAAGCTAGTCATG
1 CAATGCCTTA-C-TAA-CTAGTCACG
*
13981205 CAATGCCTTATTAGAAACTAGTCACG
1 CAATGCCTTACT---AACTAGTCACG
13981231 CAATGCC
1 CAATGCC
13981238 CAAAGTCAGT
Statistics
Matches: 119, Mismatches: 23, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
21 1 0.01
22 16 0.13
23 45 0.38
24 1 0.01
25 2 0.02
26 52 0.44
27 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.27
Consensus pattern (23 bp):
CAATGCCTTACTAACTAGTCACG
Found at i:13981171 original size:26 final size:26
Alignment explanation
Indices: 13981142--13981237 Score: 149
Period size: 26 Copynumber: 3.7 Consensus size: 26
13981132 AATACCTATC
13981142 AACTAGTCACGCAATGCCTTATTAGA
1 AACTAGTCACGCAATGCCTTATTAGA
* *
13981168 AACTAGTCACGCAATGCGTTATCA-A
1 AACTAGTCACGCAATGCCTTATTAGA
*
13981193 AAGCTAGTCATGCAATGCCTTATTAGA
1 AA-CTAGTCACGCAATGCCTTATTAGA
13981220 AACTAGTCACGCAATGCC
1 AACTAGTCACGCAATGCC
13981238 CAAAGTCAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
25 3 0.05
26 56 0.90
27 3 0.05
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (26 bp):
AACTAGTCACGCAATGCCTTATTAGA
Found at i:13981250 original size:21 final size:21
Alignment explanation
Indices: 13981224--13981279 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
13981214 ATTAGAAACT
13981224 AGTCACGCAATGCCCAAAGTC
1 AGTCACGCAATGCCCAAAGTC
**
13981245 AGTCACGCAATGTACAAAGTC
1 AGTCACGCAATGCCCAAAGTC
*
13981266 AGTCATGCAATGCC
1 AGTCACGCAATGCC
13981280 TAAAAACTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.18
Consensus pattern (21 bp):
AGTCACGCAATGCCCAAAGTC
Found at i:13981504 original size:59 final size:60
Alignment explanation
Indices: 13981395--13981519 Score: 148
Period size: 59 Copynumber: 2.1 Consensus size: 60
13981385 AATGAATATG
* * *
13981395 AATGCTTAAAATGTTCAAAAGTTTTTCTTCATATATAAAAAATCACTCCAAAATGCTTAAA
1 AATGCTCAAAATGCTCAAAAGTCTTTCTTCATATATAAAAAATCACTCCAAAATGC-TAAA
* * * *
13981456 AATGCTCAAAATGCTCACAAG-CTTTCTT-ATGTATCAAAAA-CTACTCCAAAATGCTCAA
1 AATGCTCAAAATGCTCAAAAGTCTTTCTTCATATATAAAAAATC-ACTCCAAAATGCTAAA
13981514 AATGCT
1 AATGCT
13981520 TAAATGTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
58 10 0.18
59 22 0.39
60 6 0.11
61 18 0.32
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (60 bp):
AATGCTCAAAATGCTCAAAAGTCTTTCTTCATATATAAAAAATCACTCCAAAATGCTAAA
Found at i:13983838 original size:452 final size:433
Alignment explanation
Indices: 13982965--13985813 Score: 3091
Period size: 419 Copynumber: 6.6 Consensus size: 433
13982955 GACCTTTAAA
* * * * * *
13982965 ATAAAAACTCATCCCAACTTATAATGTTCCATGTCAAGTTAGAGATACTTAAACTTAGGCAAAAG
1 ATAAAAACTC--CACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAAT
* * *
13983030 TTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTCGAAAAGAAAAAGAAAACTTAA
64 TTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAAAAAACCTAA
* * *
13983095 ATTAATTCAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTAAAGAAATTCTCAAATTAAA
129 ATTAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAATTAAA
* ** * * *
13983160 GAAACCGTTTCTTATGAAAATGTTCAAACACAACGAAAGATGTATAAATTAAGGAAAAAGTATAA
194 GAAACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATAA
* * * * *
13983225 TATCTTCATGTGATCTTTAAAGTATAACAAGTCACAATTAGTAACATCTTATACTAAAATAAAAG
259 TATCTTCATGTGATCTTTAAAGTATAACAA-TCACAATTTGTAACGTCTTATATTAAATTAAAAA
* * * *
13983290 TTATCAAATTAATAAAAGACAATCTAATATGAAAATATTTGAATACAACAAATTAAGAAAAAATT
323 TTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACAACAAATT-AGCAAAAAGT
*
13983355 AGAACATCTCAAATATATACAACCTTTTTTTTTTCAAAAAGTTAATATATACTACCGTT
387 AAAACATCTCAAATATATACAACC-------TTT--AAAA--TAATATATACTACC-TT
*
13983414 AAAATAAAAACTCACCACAATTTATAATGTTTCATGTCGAGTTAGAGATACTTAAACTAAGGAAA
1 ---ATAAAAACT--CCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAA
* * *
13983479 AATTTTCAAGTGAAGGTGTAAAATTCATGAAAACAAATTTATTATTA-ATTAAGAAAAAAAAAAT
61 AATTTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGA-AAAGAAAAAAAAAAC
*
13983543 ATAAATTAATTGAAGACATGGA-ATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAA
125 CTAAATTAATTGAAGACAT-GACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAA
* * *
13983607 TTAAAGAAACCGTTTCATGTGAAAATGTTTGAATACAACGAAAGATGTATAAATTACGCAAAAAG
189 TTAAAGAAACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAG
* * *
13983672 TATAAAATCTTCACGTGATCTTTAAAGTAATAAGCAATCACAATTTGTAACGCCTTATATTAAAT
254 TATAATATCTTCATGTGATCTTTAAAGT-ATAA-CAATCACAATTTGTAACGTCTTATATTAAAT
* ****
13983737 TAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGCATATTTTAAAGGTT-GC
317 TAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACAACAAA--TTAGC
* * *
13983801 AAAAAGTAAAACATCTCATATATATACAACATTTTTTTTGAAAGGTAATATATAC-AGCCTT
380 AAAAAGTAAAACATCTCAAATATATACAAC-----CTTT-AAA-ATAATATATACTA-CCTT
* * * *
13983862 -TAAAATCTCGTCACAATTTATAATGTTCCATGTCCAGCTAGAGATACTAAAACTAAGGAAAAAT
1 ATAAAAACTC--CACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAAT
* * *
13983926 TTTCAAGTGAAAGTGTAAACTTCTTGAAAACAAATTTATTATTAGAAAAG-GAAAAAAAACCTAA
64 TTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAAAAAACCTAA
* * *
13983990 ATTAATTGAAGACATGACATGTTGAATATCTAGTTTGTAAAGTCCCAAGAGATTTTCAAATTAAA
129 ATTAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAATTAAA
* * * * * *
13984055 AAAATCGTGTCTTGTTAAAGTGTTTGAATATGACGAAAGATGTATAAATTAAGCAAAAAGTATAA
194 GAAACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATAA
* *
13984120 TATCTTCATGTGATCTTTAAAGTATAACAAGTCACAATTTGTAACGTCTTACATTAAATTTAAAA
259 TATCTTCATGTGATCTTTAAAGTATAACAA-TCACAATTTGTAACGTCTTATATTAAATTAAAAA
* * * * *
13984185 TTCTCAAATTAATAAAAGACAATTTAATGTTAAAGTATCTGAATACAGCAAATTAAGCAAAAAGT
323 TTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACAACAAATT-AGCAAAAAGT
*
13984250 AAAACATCTCAAATATATACAGCCTTTAAAATAA-A-A-ACT--C--
387 AAAACATCTCAAATATATACAACCTTTAAAATAATATATACTACCTT
* * * *
13984290 ------ACT--ACAATTTATAATCTTCCATGTTGAGTTGGAGATACTTAAAGTAAGGAAAAATTT
1 ATAAAAACTCCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAATTT
* *
13984347 TCAAGTGAAGGTGAAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAGAAAACCTAAAT
66 TCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAAAAAACCTAAAT
* * *
13984412 TAATTGAAGACATGATATGTTGAATACCTAGTTTGTAAAATCCCAAGAGATTCTCAAATTAAAGA
131 TAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAATTAAAGA
* * * * *
13984477 AACCGTTTCTTGTGAAAATGTTTGAATATGACAAAAAATGTATAAATTAAGTATAAAGTATAATA
196 AACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATAATA
* * * *
13984542 TCTTCATGTGATCTTTAAAGTATAACCAGTCACAATTTGTAACATCTCT-TATTAAATTTAAAAC
261 TCTTCATGTGATCTTTAAAGTATAA-CAATCACAATTTGTAACGTCT-TATATTAAATTAAAAAT
* * *
13984606 TCCCAAATTAA-CAAAGACAATTTAATATGAAAATATTTGAATAGAACAAATTAAGCAAAAAGTA
324 TCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACAACAAATT-AGCAAAAAGTA
*
13984670 AAACATCTCAAATATATACGACCTTTAAAATAA-A-A-ACT--C--
388 AAACATCTCAAATATATACAACCTTTAAAATAATATATACTACCTT
* * * *
13984709 AT------T--ACAATTTATAATGTTCCATGTTGCA-TTAGAGACACTTAAAGTAAGGATAAATT
1 ATAAAAACTCCACAATTTATAATGTTCCATGTCG-AGTTAGAGATACTTAAACTAAGGAAAAATT
* **
13984765 TTCAAGTGAAGGTG-AAAATTTCTTCAAAA-AGAATTTATTATTAGAAAAGAAAAAGTAAACCTA
65 TTCAAGTGAAGGTGTAAAA-TTCTTGAAAACA-AATTTATTATTAGAAAAGAAAAAAAAAACCTA
* * *
13984828 AATTAATTGAAGACATGATATGTTGAATACCTAGTTTGCAAATTCTCAAGAGATTCTCAAATTAA
128 AATTAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAATTAA
* * * * *
13984893 AGAAACCGTTTCGTGTGAAAATGTTTGAATACGACGAAAGGTGTATAGATTAAACAAAAAGCATA
193 AGAAACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATA
* ** *
13984958 ATATCTTCACGTGATCTTTAAAGTAATAACCAATTGCAATTTGTAACGTCTTATATGAAATTAAA
258 ATATCTTCATGTGATCTTTAAAGT-ATAA-CAATCACAATTTGTAACGTCTTATATTAAATTAAA
* * *
13985023 AATTCTAAAATTAAAAACAAAAAGACAATTGAATATGAAAATATTTGAATACAACAAATTAAGCA
321 AATTCTCAAATT---AA-TAAAAGACAATTTAATATGAAAATATTTGAATACAACAAATT-AGCA
*** *
13985088 AAAAGTAAAACATCTCAAATATATTTGACCTTTAAAATAA-A-A-GCT--C--
381 AAAAGTAAAACATCTCAAATATATACAACCTTTAAAATAATATATACTACCTT
* * *
13985134 ------A--CCACAATTTATAATATTCCATGTCTAGTTAGAGATACCTAAACTAAGG--AAATTT
1 ATAAAAACTCCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAATTT
* * * * *
13985189 TCAAATGAAGGTGTAAAATTCTTGAAAATAAATTTGTTATTAGAAAAGAAAAAGAAAACCTAAGT
66 TCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAAAAAACCTAAAT
* * * * *
13985254 TAAATGAAGACATGACATCTTGAATACCTAGTTTATAAAGGCTCAAGAGATTCTCAAATTAGAGA
131 TAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAATTAAAGA
** ** * * * * * *
13985319 AGTCAATTCATGTGAAAATGTTTGAATACGGCGAAAAATGTATTAATTAAGCCAAAAACTAAAAT
196 AACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAG-CAAAAAGTATAAT
* * * * * * * *
13985384 AACTTCACATG-GTTCTTTTAAAATAATAATAAGTCACAGTTTGTAATGTCTAATATAAAATTAA
260 ATCTT--CATGTGATC-TTTAAAGT-ATAACAA-TCACAATTTGTAACGTCTTATATTAAATTAA
* * *
13985448 AAATTCTCAAATTAATAAACGACAATTTAATGTGAAAATAATTGAATACAACAAATTAAGC-AAA
320 AAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACAACAAATT-AGCAAAA
* * *
13985512 AGTAAAACATCTGAAATATATACGATCTTTAAAATAA-A-A-ACT--C--
384 AGTAAAACATCTCAAATATATACAACCTTTAAAATAATATATACTACCTT
13985555 ------A--CCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAATTT
1 ATAAAAACTCCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAATTT
* * *
13985612 TCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTGTTAGAAAAGAAAAAGAAAATCTAAAT
66 TCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAAAAAACCTAAAT
* *
13985677 TTATTGAAGACATGACATGTTGAATATCTAGTTTGTAAAGTCTCAAGAGATTCTTC-AATTGAAA
131 TAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTC-TCAAATT-AAA
* * * * *
13985741 -AAATCATTTCATGTGAAAATGTTTGAATACGACGAAAGATGTATTAATTAAGCCAAAATA-TAA
194 GAAACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAG-CAAAA-AGTAT
13985804 AATATCTTCA
257 AATATCTTCA
13985814 CATGGTTCTT
Statistics
Matches: 2105, Mismatches: 238, Indels: 139
0.85 0.10 0.06
Matches are distributed among these distances:
418 5 0.00
419 418 0.20
420 238 0.11
421 92 0.04
422 41 0.02
423 342 0.16
424 25 0.01
425 129 0.06
426 52 0.02
430 1 0.00
432 2 0.00
433 1 0.00
434 1 0.00
435 3 0.00
436 3 0.00
437 3 0.00
440 2 0.00
441 3 0.00
442 111 0.05
443 147 0.07
444 100 0.05
445 1 0.00
448 3 0.00
449 12 0.01
450 3 0.00
451 4 0.00
452 250 0.12
453 107 0.05
454 4 0.00
455 2 0.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (433 bp):
ATAAAAACTCCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAATTT
TCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGAAAAAAAAAACCTAAAT
TAATTGAAGACATGACATGTTGAATACCTAGTTTGTAAAGTCTCAAGAGATTCTCAAATTAAAGA
AACCGTTTCTTGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATAATA
TCTTCATGTGATCTTTAAAGTATAACAATCACAATTTGTAACGTCTTATATTAAATTAAAAATTC
TCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACAACAAATTAGCAAAAAGTAAAA
CATCTCAAATATATACAACCTTTAAAATAATATATACTACCTT
Found at i:13984471 original size:863 final size:841
Alignment explanation
Indices: 13983398--13985858 Score: 3028
Period size: 846 Copynumber: 2.9 Consensus size: 841
13983388 TCAAAAAGTT
* * * *
13983398 AATATATACTA-CCGTTAAAATAAAAACTCACCACAATTTATAATGTTTCATGTCGAGTTAGAGA
1 AATATATAC-AGCCTTTAAAATAAAAACTCACCACAATTTATAATATTCCATGTTGAGTTAGAGA
*
13983462 TACTTAAACTAAGGAAAAATTTTCAAGTGAAGGTGTAAAATTCATGAAAACAAATTTATTATTA-
65 TACTTAAACTAAGGAAAAATTTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAG
* * **
13983526 ATTAAGAAAAAAAAAATATAAATTAATTGAAGACATGGAATGTTGAATACCTAGTTTGTAAAGTC
130 A-AAAGAAAAAGAAAACCTAAATTAATTGAAGACAT-GAATGTTGAATACCTAGTTTGTAAAGTC
* *
13983591 TCAAGAGATTCTCAAATTAAAGAAACCGTTTCATGTGAAAATGTTTGAATACAACGAAAGATGTA
193 TCAAGAGATTCTCAAATTAAAGAAACCGTTTCATGTGAAAATGTTTGAATACGACGAAAAATGTA
*
13983656 TAAATTACGCAAAAAGTATAAAATCTTCACGTGATCTTTAAAGTAATAAGCAATCACAATTTGTA
258 TAAATTAAGCAAAAAGTATAAAATCTTCACGTGATCTTTAAAGTAATAA-CAATCACAATTTGTA
* *
13983721 ACGCCTTATATTAAATTAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGCA
322 ACGTCTTATATTAAATTAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAA
**** * *
13983786 TATTTTAAAGGTT-GCAAAAAGTAAAACATCTCATATATATACAACATTTTTTTTGAAAGGTAAT
387 TACAACAAA--TTAGCAAAAAGTAAAACATCTCAAATATATAC-ACA----TCTT------TAA-
* * *
13983850 ATATACAGCCTTTAAAATCTCGTCACAATTTATAATGTTCCATGTCCAGCTAGAGATACTAAAAC
438 A-AT--A------AAAA-CTCATCACAATTTATAATGTTCCATGTCCAGTTAGAGATACTTAAAC
* *
13983915 TAAGGAAAAATTTTCAAGTGAAAGTGTAAACTTCTTGAAAACAAATTTATTATTAGAAAAGGAAA
493 TAAGGAAAAATTTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGGAAA
*
13983980 AAAAACCTAAATTAATTGAAGACATGACATGTTGAATATCTAGTTTGTAAAGTCCCAAGAGATTT
558 AAAAACCTAAATTAATTGAAGACATGACATGTTGAATATCTAGTTTGTAAAGTCTCAAGAGATTT
* * * * *
13984045 TCAAATTAAAAAAATCGTGTCTTGTTAAAGTGTTTGAATATGACGAAAGATGTATAAATTAAGCA
623 TCAAATTAAAAAAATCGTTTCATGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCA
*
13984110 AAAAGTATAATATCTTCATGTGATCTTTAAAGT-ATAA-CAAGTCACAATTTGTAACGTCTTACA
688 AAAAGTATAATATCTTCACGTGATCTTTAAAGTAATAACCAA-TCACAATTTGTAACGTCTTACA
* * * * * * * * *
13984173 TTAAATTTAAAATTCTCAAATT-AA-TAAAAGACAATTTAATGTTAAAGTATCTGAATACAGCAA
752 TGAAATTAAAAATTCTAAAATTAAACAAAAAGACAATTGAATATGAAAATATCTGAATACAACAA
13984236 ATTAAGCAAAAAGTAAAACATCTCA
817 ATTAAGCAAAAAGTAAAACATCTCA
* * *
13984261 AATATATACAGCCTTTAAAATAAAAACTCACTACAATTTATAATCTTCCATGTTGAGTTGGAGAT
1 AATATATACAGCCTTTAAAATAAAAACTCACCACAATTTATAATATTCCATGTTGAGTTAGAGAT
* *
13984326 ACTTAAAGTAAGGAAAAATTTTCAAGTGAAGGTGAAAAATTCTTGAAAACAAATTTATTATTAGA
66 ACTTAAACTAAGGAAAAATTTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGA
* *
13984391 AAAGAAAAAGAAAACCTAAATTAATTGAAGACATGATATGTTGAATACCTAGTTTGTAAAATCCC
131 AAAGAAAAAGAAAACCTAAATTAATTGAAGACATGA-ATGTTGAATACCTAGTTTGTAAAGTCTC
* * *
13984456 AAGAGATTCTCAAATTAAAGAAACCGTTTCTTGTGAAAATGTTTGAATATGACAAAAAATGTATA
195 AAGAGATTCTCAAATTAAAGAAACCGTTTCATGTGAAAATGTTTGAATACGACGAAAAATGTATA
* * * * *
13984521 AATTAAGTATAAAGTATAATATCTTCATGTGATCTTTAAAGT-ATAACCAGTCACAATTTGTAAC
260 AATTAAGCAAAAAGTATAAAATCTTCACGTGATCTTTAAAGTAATAA-CAATCACAATTTGTAAC
* * * * *
13984585 ATCTCT-TATTAAATTTAAAACTCCCAAATTAA-CAAAGACAATTTAATATGAAAATATTTGAAT
324 GTCT-TATATTAAATTAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAAT
*
13984648 AGAACAAATTAAGCAAAAAGTAAAACATCTCAAATATATACGAC--CTTTAAAATAAAAACTCAT
388 ACAACAAATT-AGCAAAAAGTAAAACATCTCAAATATATAC-ACATCTTTAAAATAAAAACTCAT
* * * * *
13984711 TACAATTTATAATGTTCCATGTTGCA-TTAGAGACACTTAAAGTAAGGATAAATTTTCAAGTGAA
451 CACAATTTATAATGTTCCATG-TCCAGTTAGAGATACTTAAACTAAGGAAAAATTTTCAAGTGAA
*
13984775 GGTG-AAAATTTCTTCAAAA-AGAATTTATTATTAGAAAA-GAAAAAGTAAACCTAAATTAATTG
515 GGTGTAAAA-TTCTTGAAAACA-AATTTATTATTAGAAAAGGAAAAA--AAACCTAAATTAATTG
* * * * * * *
13984837 AAGACATGATATGTTGAATACCTAGTTTGCAAATTCTCAAGAGATTCTCAAATTAAAGAAACCGT
576 AAGACATGACATGTTGAATATCTAGTTTGTAAAGTCTCAAGAGATTTTCAAATTAAAAAAATCGT
* * * * *
13984902 TTCGTGTGAAAATGTTTGAATACGACGAAAGGTGTATAGATTAAACAAAAAGCATAATATCTTCA
641 TTCATGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATAATATCTTCA
** *
13984967 CGTGATCTTTAAAGTAATAACCAATTGCAATTTGTAACGTCTTATATGAAATTAAAAATTCTAAA
706 CGTGATCTTTAAAGTAATAACCAATCACAATTTGTAACGTCTTACATGAAATTAAAAATTCTAAA
*
13985032 ATTAAAAACAAAAAGACAATTGAATATGAAAATATTTGAATACAACAAATTAAGCAAAAAGTAAA
771 ATT--AAACAAAAAGACAATTGAATATGAAAATATCTGAATACAACAAATTAAGCAAAAAGTAAA
13985097 ACATCTCA
834 ACATCTCA
** *
13985105 AATATAT-TTGACCTTTAAAATAAAAGCTCACCACAATTTATAATATTCCATGTCT-AGTTAGAG
1 AATATATACAG-CCTTTAAAATAAAAACTCACCACAATTTATAATATTCCATGT-TGAGTTAGAG
* * * *
13985168 ATACCTAAACTAAGG--AAATTTTCAAATGAAGGTGTAAAATTCTTGAAAATAAATTTGTTATTA
64 ATACTTAAACTAAGGAAAAATTTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTA
* * * * *
13985231 GAAAAGAAAAAGAAAACCTAAGTTAAATGAAGACATGACATCTTGAATACCTAGTTTATAAAGGC
129 GAAAAGAAAAAGAAAACCTAAATTAATTGAAGACATGA-ATGTTGAATACCTAGTTTGTAAAGTC
* ** ** *
13985296 TCAAGAGATTCTCAAATTAGAGAAGTCAATTCATGTGAAAATGTTTGAATACGGCGAAAAATGTA
193 TCAAGAGATTCTCAAATTAAAGAAACCGTTTCATGTGAAAATGTTTGAATACGACGAAAAATGTA
* * * * * * * *
13985361 TTAATTAAGCCAAAAACTA-AAATAACTTCACATGGTTCTTTTAAAATAATAATAAGTCACAGTT
258 TAAATTAAG-CAAAAAGTATAAA-ATCTTCACGT-GATC-TTTAAAGTAATAACAA-TCACAATT
* * * * * *
13985425 TGTAATGTCTAATATAAAATTAAAAATTCTCAAATTAATAAACGACAATTTAATGTGAAAATAAT
318 TGTAACGTCTTATATTAAATTAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATT
* *
13985490 TGAATACAACAAATTAAGC-AAAAGTAAAACATCTGAAATATATAC-GATCTTTAAAATAAAAAC
383 TGAATACAACAAATT-AGCAAAAAGTAAAACATCTCAAATATATACACATCTTTAAAATAAAAAC
* *
13985553 TCACCACAATTTATAATGTTCCATGTCGAGTTAGAGATACTTAAACTAAGGAAAAATTTTCAAGT
447 TCATCACAATTTATAATGTTCCATGTCCAGTTAGAGATACTTAAACTAAGGAAAAATTTTCAAGT
* * * *
13985618 GAAGGTGTAAAATTCTTGAAAACAAATTTATTGTTAGAAAAGAAAAAGAAAATCTAAATTTATTG
512 GAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGAAAAGGAAAA-AAAACCTAAATTAATTG
* *
13985683 AAGACATGACATGTTGAATATCTAGTTTGTAAAGTCTCAAGAGATTCTTC-AATTGAAAAAATCA
576 AAGACATGACATGTTGAATATCTAGTTTGTAAAGTCTCAAGAGATT-TTCAAATTAAAAAAATCG
* *
13985747 TTTCATGTGAAAATGTTTGAATACGACGAAAGATGTATTAATTAAGCCAAAATA-TAAAATATCT
640 TTTCATGTGAAAATGTTTGAATACGACGAAAGATGTATAAATTAAG-CAAAA-AGTATAATATCT
* * * * * * *
13985811 TCACATGGTTCTTTTAAAATAATAATCAGTCACAATTTATAACATCTT
703 TCACGT-GATC-TTTAAAGTAATAACCAATCACAATTTGTAACGTCTT
13985859 GTTTCAATAT
Statistics
Matches: 1383, Mismatches: 176, Indels: 92
0.84 0.11 0.06
Matches are distributed among these distances:
837 10 0.01
838 86 0.06
839 150 0.11
840 42 0.03
841 3 0.00
842 167 0.12
843 16 0.01
844 126 0.09
845 12 0.01
846 275 0.20
847 71 0.05
848 6 0.00
849 32 0.02
855 2 0.00
859 2 0.00
861 63 0.05
862 48 0.03
863 271 0.20
864 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (841 bp):
AATATATACAGCCTTTAAAATAAAAACTCACCACAATTTATAATATTCCATGTTGAGTTAGAGAT
ACTTAAACTAAGGAAAAATTTTCAAGTGAAGGTGTAAAATTCTTGAAAACAAATTTATTATTAGA
AAAGAAAAAGAAAACCTAAATTAATTGAAGACATGAATGTTGAATACCTAGTTTGTAAAGTCTCA
AGAGATTCTCAAATTAAAGAAACCGTTTCATGTGAAAATGTTTGAATACGACGAAAAATGTATAA
ATTAAGCAAAAAGTATAAAATCTTCACGTGATCTTTAAAGTAATAACAATCACAATTTGTAACGT
CTTATATTAAATTAAAAATTCTCAAATTAATAAAAGACAATTTAATATGAAAATATTTGAATACA
ACAAATTAGCAAAAAGTAAAACATCTCAAATATATACACATCTTTAAAATAAAAACTCATCACAA
TTTATAATGTTCCATGTCCAGTTAGAGATACTTAAACTAAGGAAAAATTTTCAAGTGAAGGTGTA
AAATTCTTGAAAACAAATTTATTATTAGAAAAGGAAAAAAAACCTAAATTAATTGAAGACATGAC
ATGTTGAATATCTAGTTTGTAAAGTCTCAAGAGATTTTCAAATTAAAAAAATCGTTTCATGTGAA
AATGTTTGAATACGACGAAAGATGTATAAATTAAGCAAAAAGTATAATATCTTCACGTGATCTTT
AAAGTAATAACCAATCACAATTTGTAACGTCTTACATGAAATTAAAAATTCTAAAATTAAACAAA
AAGACAATTGAATATGAAAATATCTGAATACAACAAATTAAGCAAAAAGTAAAACATCTCA
Found at i:13989141 original size:43 final size:43
Alignment explanation
Indices: 13989078--13989202 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
13989068 TATTGACTCG
13989078 GCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCC-
1 GCTATGTGCGAGTAGGGAGTGCGCATAAGCCG-GTGATGACCCA
* * *
13989120 GATTATGTGCGAGTAGGGAGTGCGCATAATCCGGTGATTACCCA
1 G-CTATGTGCGAGTAGGGAGTGCGCATAAGCCGGTGATGACCCA
* * * *
13989164 GCCATGTGTGAGTAGGGAGTGCGCATGAGCTGGTGATGA
1 GCTATGTGCGAGTAGGGAGTGCGCATAAGCCGGTGATGA
13989203 TGATGATGGA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 2 0.03
43 67 0.96
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.38, T:0.22
Consensus pattern (43 bp):
GCTATGTGCGAGTAGGGAGTGCGCATAAGCCGGTGATGACCCA
Found at i:13990164 original size:20 final size:20
Alignment explanation
Indices: 13990139--13990184 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
13990129 TTTTGACCCC
13990139 ATTTGACTTATT-AGAGTATA
1 ATTTGACTTATTGA-AGTATA
*
13990159 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
13990179 ATTTGA
1 ATTTGA
13990185 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:13998203 original size:20 final size:20
Alignment explanation
Indices: 13998178--13998223 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
13998168 TTTTGACCCC
13998178 ATTTGACTTATT-AGAGTATA
1 ATTTGACTTATTGA-AGTATA
*
13998198 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
13998218 ATTTGA
1 ATTTGA
13998224 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:13998299 original size:28 final size:27
Alignment explanation
Indices: 13998268--13998320 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
13998258 TTTGGAGTAT
*
13998268 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
13998296 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
13998321 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:13998326 original size:28 final size:28
Alignment explanation
Indices: 13998268--13998326 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
13998258 TTTGGAGTAT
* *
13998268 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
13998296 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
13998324 AGG
1 AGG
13998327 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:14012154 original size:28 final size:29
Alignment explanation
Indices: 14012093--14012157 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
14012083 GTAAATTTTT
*** *
14012093 AAAAATTACACTTTTACCCCCGTAAAGTG
1 AAAAATTACACTTTTACCCCAAAAAAATG
*
14012122 AAAAATTACATTTTTACCCCAAAAAAATG
1 AAAAATTACACTTTTACCCCAAAAAAATG
14012151 AAAAATT
1 AAAAATT
14012158 GCCCATAGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCAAAAAAATG
Found at i:14025632 original size:63 final size:63
Alignment explanation
Indices: 14025565--14025708 Score: 166
Period size: 63 Copynumber: 2.3 Consensus size: 63
14025555 TGATTCCTAG
* * * * *
14025565 AAAACAAAATGCTCCAGAGGC-AAGAAGAATCGACTTCTCA-AGAATGCATTGATCAATTCTTAC
1 AAAACAAAATGCTCCAGAGACTAA-AAGAATCAACTTCTCATA-AATGCACTAATCAATTATTAC
* * *
14025628 AAAACAAAATGCTCTAGAGACTAAAGGAATCAACTTCTCATAAATGCACTAATCAATTATTAT
1 AAAACAAAATGCTCCAGAGACTAAAAGAATCAACTTCTCATAAATGCACTAATCAATTATTAC
* *
14025691 AAGACAAAATACTCCAGA
1 AAAACAAAATGCTCCAGA
14025709 CTTAAAAAAG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
63 65 0.96
64 3 0.04
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.23
Consensus pattern (63 bp):
AAAACAAAATGCTCCAGAGACTAAAAGAATCAACTTCTCATAAATGCACTAATCAATTATTAC
Found at i:14026293 original size:27 final size:28
Alignment explanation
Indices: 14026245--14026297 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
14026235 AGTGTATAAA
*
14026245 GGTTATGCCTGATCCTTGAAAAGGCAAG
1 GGTTATGCCTGATCCATGAAAAGGCAAG
*
14026273 GGTTATGCTTGATCCAT-AAAAGGCA
1 GGTTATGCCTGATCCATGAAAAGGCA
14026298 GTCGTTTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (28 bp):
GGTTATGCCTGATCCATGAAAAGGCAAG
Found at i:14027310 original size:16 final size:17
Alignment explanation
Indices: 14027289--14027324 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
14027279 TTTTCATTTC
*
14027289 CTTTCTTTTCTT-ACTT
1 CTTTCTTCTCTTAACTT
14027305 CTTTCTTCTCTTAACTT
1 CTTTCTTCTCTTAACTT
14027322 CTT
1 CTT
14027325 GGGCACCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (17 bp):
CTTTCTTCTCTTAACTT
Found at i:14028218 original size:55 final size:55
Alignment explanation
Indices: 14028137--14028338 Score: 271
Period size: 55 Copynumber: 3.7 Consensus size: 55
14028127 GGGTGATTTT
* * * *
14028137 AGCTATGTGCAGTGTGAGAGTGCACATGAGCTAATGA-CTAGTGGATGATGATTCC
1 AGCTATGTGCGGTGTGGGAGTACACATGAGCTGATGATC-AGTGGATGATGATTCC
* * *
14028192 AGCTATATGTGGTGTGGGAGTACACATGAGCTGATGATCAATGGATGATGATTCC
1 AGCTATGTGCGGTGTGGGAGTACACATGAGCTGATGATCAGTGGATGATGATTCC
* * * * *
14028247 AACTATGTGCAGTATGGGAGTGCACATGAGCTGATGATCGGTGGATGATGATTCC
1 AGCTATGTGCGGTGTGGGAGTACACATGAGCTGATGATCAGTGGATGATGATTCC
*
14028302 AGCTATGTGCGGTGAGGGAGTACACATGAGCTGATGA
1 AGCTATGTGCGGTGTGGGAGTACACATGAGCTGATGA
14028339 GCCGGTGGTT
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
55 125 0.99
56 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (55 bp):
AGCTATGTGCGGTGTGGGAGTACACATGAGCTGATGATCAGTGGATGATGATTCC
Found at i:14028255 original size:110 final size:110
Alignment explanation
Indices: 14028139--14028338 Score: 321
Period size: 110 Copynumber: 1.8 Consensus size: 110
14028129 GTGATTTTAG
* *
14028139 CTATGTGCAGTGTGAGAGTGCACATGAGCTAATGA-CTAGTGGATGATGATTCCAGCTATATGTG
1 CTATGTGCAGTATGAGAGTGCACATGAGCTAATGATC-AGTGGATGATGATTCCAGCTATATGCG
*
14028203 GTGTGGGAGTACACATGAGCTGATGATCAATGGATGATGATTCCAA
65 GTGAGGGAGTACACATGAGCTGATGATCAATGGATGATGATTCCAA
* * * *
14028249 CTATGTGCAGTATGGGAGTGCACATGAGCTGATGATCGGTGGATGATGATTCCAGCTATGTGCGG
1 CTATGTGCAGTATGAGAGTGCACATGAGCTAATGATCAGTGGATGATGATTCCAGCTATATGCGG
14028314 TGAGGGAGTACACATGAGCTGATGA
66 TGAGGGAGTACACATGAGCTGATGA
14028339 GCCGGTGGTT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
110 81 0.99
111 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (110 bp):
CTATGTGCAGTATGAGAGTGCACATGAGCTAATGATCAGTGGATGATGATTCCAGCTATATGCGG
TGAGGGAGTACACATGAGCTGATGATCAATGGATGATGATTCCAA
Found at i:14030041 original size:30 final size:30
Alignment explanation
Indices: 14030007--14030112 Score: 194
Period size: 30 Copynumber: 3.5 Consensus size: 30
14029997 GAATTAAGCG
*
14030007 AACCCATGGTTTTTAACATGTTCAACCATA
1 AACCCATGGTTTTTAACAAGTTCAACCATA
14030037 AACCCATGGTTTTTAACAAGTTCAACCATA
1 AACCCATGGTTTTTAACAAGTTCAACCATA
14030067 AACCCATGGTTTTTAACAAGTTCAACCATA
1 AACCCATGGTTTTTAACAAGTTCAACCATA
*
14030097 AACCCATAGTTTTTAA
1 AACCCATGGTTTTTAA
14030113 TAAGCTCTAC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 74 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (30 bp):
AACCCATGGTTTTTAACAAGTTCAACCATA
Found at i:14033359 original size:45 final size:45
Alignment explanation
Indices: 14033295--14033381 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
14033285 GGCAAGTATG
* *
14033295 TTGGGGAGAAAGCATGAAATCAGATTTACAAACGCAGTAAAAATT
1 TTGGGGAGAAAGCATGAAATCAAATTTACAAACACAGTAAAAATT
14033340 TTGGGGAGAAAGCATGAAATCAAATTTACAAACACAGTAAAA
1 TTGGGGAGAAAGCATGAAATCAAATTTACAAACACAGTAAAA
14033382 TCTAAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (45 bp):
TTGGGGAGAAAGCATGAAATCAAATTTACAAACACAGTAAAAATT
Found at i:14034661 original size:24 final size:24
Alignment explanation
Indices: 14034634--14034742 Score: 66
Period size: 24 Copynumber: 4.6 Consensus size: 24
14034624 ATACGCTATG
*
14034634 ATGTTACACGCCATGTATAAAAAC
1 ATGTGACACGCCATGTATAAAAAC
* *
14034658 ATGTGGACAAGCCATGGT-T---AGC
1 ATGT-GACACGCCAT-GTATAAAAAC
* * * *
14034680 ATGTTACACGCTATGTAAAAAAAT
1 ATGTGACACGCCATGTATAAAAAC
* *
14034704 ATGTGACACGCTATGTACAAAAATC
1 ATGTGACACGCCATGTATAAAAA-C
*
14034729 -TGTGACAAGCCATG
1 ATGTGACACGCCATG
14034743 GTTAGCATAT
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
20 2 0.03
21 7 0.11
22 6 0.09
24 38 0.59
25 9 0.14
26 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (24 bp):
ATGTGACACGCCATGTATAAAAAC
Found at i:14034756 original size:69 final size:72
Alignment explanation
Indices: 14034634--14034777 Score: 215
Period size: 69 Copynumber: 2.0 Consensus size: 72
14034624 ATACGCTATG
* * *
14034634 ATGTTACACGCCATGTATAAAAACATGTGGACAAGCCATGGTTAGCATGTTACACGCTATGTA-A
1 ATGTGACACGCCATGTACAAAAACATGTGGACAAGCCATGGTTAGCATATTACACGCTATGTACA
14034698 AAAA-AT
66 AAAACAT
*
14034704 ATGTGACACGCTATGTACAAAAATC-TGT-GACAAGCCATGGTTAGCATATTACACGCTATGTAC
1 ATGTGACACGCCATGTACAAAAA-CATGTGGACAAGCCATGGTTAGCATATTACACGCTATGTAC
14034767 AAAAACAT
65 AAAAACAT
14034775 ATG
1 ATG
14034778 ACAAATCATG
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
69 33 0.49
70 28 0.42
71 6 0.09
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (72 bp):
ATGTGACACGCCATGTACAAAAACATGTGGACAAGCCATGGTTAGCATATTACACGCTATGTACA
AAAACAT
Found at i:14034780 original size:45 final size:45
Alignment explanation
Indices: 14034709--14034832 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 45
14034699 AAAATATGTG
* *
14034709 ACACGCTATGTACAAAAATC-TGTGACAAGCCATGGTTAGCATATT
1 ACACGCTATGTACAAAAA-CATGTGACAAGTCATGGTTAACATATT
* * *
14034754 ACACGCTATGTACAAAAACATATGACAAATCATGGTTAACTTATT
1 ACACGCTATGTACAAAAACATGTGACAAGTCATGGTTAACATATT
* *
14034799 ACATG-TCATGTACAAAAATATGTGACAAGTCATG
1 ACACGCT-ATGTACAAAAACATGTGACAAGTCATG
14034833 TATAAAAACC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.03
45 66 0.97
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (45 bp):
ACACGCTATGTACAAAAACATGTGACAAGTCATGGTTAACATATT
Found at i:14034839 original size:24 final size:24
Alignment explanation
Indices: 14034803--14034851 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
14034793 CTTATTACAT
*
14034803 GTCATGTACAAAAATATGTGACAA
1 GTCATGTACAAAAACATGTGACAA
* *
14034827 GTCATGTATAAAAACCTGTGACAA
1 GTCATGTACAAAAACATGTGACAA
14034851 G
1 G
14034852 CTATGGTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.24
Consensus pattern (24 bp):
GTCATGTACAAAAACATGTGACAA
Found at i:14034894 original size:45 final size:45
Alignment explanation
Indices: 14034830--14034939 Score: 166
Period size: 45 Copynumber: 2.4 Consensus size: 45
14034820 GTGACAAGTC
* **
14034830 ATGTATAAAAACCTGTGACAAGCTATGGTTAGTTTGTTACACACT
1 ATGTACAAAAACCTGTGACAAGCTATGGTTAGCATGTTACACACT
*
14034875 ATGTACAAAAACCTGTGACAAGCTATGGTTAGCATGTTACACGCT
1 ATGTACAAAAACCTGTGACAAGCTATGGTTAGCATGTTACACACT
**
14034920 ATGTACAAAAATATGTGACA
1 ATGTACAAAAACCTGTGACA
14034940 CGGCATATAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (45 bp):
ATGTACAAAAACCTGTGACAAGCTATGGTTAGCATGTTACACACT
Found at i:14034982 original size:114 final size:114
Alignment explanation
Indices: 14034634--14034984 Score: 429
Period size: 114 Copynumber: 3.1 Consensus size: 114
14034624 ATACGCTATG
* * * *
14034634 ATGTTACACGCCATGTATAAAAACATGTGGACAAGCCATGGTTAGCATGTTACACGCTATGTAAA
1 ATGTTACACGCTATGTACAAAAACATGT-GACAAGCTATGGTTAGCATGTTACACGCTATGTACA
*
14034699 AAAATATGTGACAC-GCTATGTACAAAAATCTGTGACAAGCCATGGTTAGC
65 AAAATATGTGACACGGC-ATGTACAAAAACCTGTGACAAGCCATGGTTAGC
* * * * * * *
14034749 ATATTACACGCTATGTACAAAAACATATGACAA-ATCATGGTTAACTTATTACATG-TCATGTAC
1 ATGTTACACGCTATGTACAAAAACATGTGACAAGCT-ATGGTTAGCATGTTACACGCT-ATGTAC
* * * * *
14034812 AAAAATATGTGACAAGTCATGTATAAAAACCTGTGACAAGCTATGGTTAGT
64 AAAAATATGTGACACGGCATGTACAAAAACCTGTGACAAGCCATGGTTAGC
* * *
14034863 TTGTTACACACTATGTACAAAAACCTGTGACAAGCTATGGTTAGCATGTTACACGCTATGTACAA
1 ATGTTACACGCTATGTACAAAAACATGTGACAAGCTATGGTTAGCATGTTACACGCTATGTACAA
* * *
14034928 AAATATGTGACACGGCATATACAAAAACCTGTGACAAACCATGATTAGC
66 AAATATGTGACACGGCATGTACAAAAACCTGTGACAAGCCATGGTTAGC
*
14034977 GTGTTACA
1 ATGTTACA
14034985 TNNNNNNNNN
Statistics
Matches: 195, Mismatches: 36, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
113 1 0.01
114 167 0.86
115 27 0.14
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (114 bp):
ATGTTACACGCTATGTACAAAAACATGTGACAAGCTATGGTTAGCATGTTACACGCTATGTACAA
AAATATGTGACACGGCATGTACAAAAACCTGTGACAAGCCATGGTTAGC
Found at i:14035611 original size:1 final size:1
Alignment explanation
Indices: 14035600--14035659 Score: 84
Period size: 1 Copynumber: 60.0 Consensus size: 1
14035590 NNNTTACATC
* * * *
14035600 TTTTCTTTTTTTTTTTTTTTTTTTTTTGTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14035660 ACAATTTGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.02, C:0.02, G:0.03, T:0.93
Consensus pattern (1 bp):
T
Found at i:14035625 original size:17 final size:17
Alignment explanation
Indices: 14035600--14035659 Score: 95
Period size: 17 Copynumber: 3.6 Consensus size: 17
14035590 NNNTTACATC
*
14035600 TTTTCTTTTTT-TTTTT
1 TTTTTTTTTTTGTTTTT
*
14035616 TTTTTTTTTTTGTTATT
1 TTTTTTTTTTTGTTTTT
14035633 TTTTTTTTTTTGTTTTT
1 TTTTTTTTTTTGTTTTT
14035650 TTTTTTTTTT
1 TTTTTTTTTT
14035660 ACAATTTGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
16 10 0.25
17 30 0.75
ACGTcount: A:0.02, C:0.02, G:0.03, T:0.93
Consensus pattern (17 bp):
TTTTTTTTTTTGTTTTT
Found at i:14039517 original size:18 final size:19
Alignment explanation
Indices: 14039478--14039518 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
14039468 TTAATATTTT
*
14039478 AATATTATTTTATTCATAA
1 AATAATATTTTATTCATAA
14039497 AATAATATTTTATTC-TAA
1 AATAATATTTTATTCATAA
14039515 AATA
1 AATA
14039519 TTCTTCTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
AATAATATTTTATTCATAA
Found at i:14045906 original size:47 final size:47
Alignment explanation
Indices: 14045816--14045940 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
14045806 AGAGAATTTG
*
14045816 TGACACGCTAGAGTTAAGAGTTGGTGACACGACATGGAGGGAATCTA
1 TGACACGCCAGAGTTAAGAGTTGGTGACACGACATGGAGGGAATCTA
* * * * * * *
14045863 TGATACGTC-GACGTTCAGAGTTGGTGAGATG-CTATGGATGGAATCTG
1 TGACACGCCAGA-GTTAAGAGTTGGTGACACGAC-ATGGAGGGAATCTA
14045910 TGACACGCCAGAGTTAAGAGTTGGTGACACG
1 TGACACGCCAGAGTTAAGAGTTGGTGACACG
14045941 TCAGCGTTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
46 3 0.05
47 57 0.92
48 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (47 bp):
TGACACGCCAGAGTTAAGAGTTGGTGACACGACATGGAGGGAATCTA
Found at i:14045949 original size:24 final size:24
Alignment explanation
Indices: 14045909--14046012 Score: 92
Period size: 24 Copynumber: 4.5 Consensus size: 24
14045899 GATGGAATCT
14045909 GTGACACGCCAGAGTTAAGAGTTG
1 GTGACACGCCAGAGTTAAGAGTTG
* *
14045933 GTGACACGTCAGCGTTAAGAGTTG
1 GTGACACGCCAGAGTTAAGAGTTG
* * *
14045957 G-GACACGCCATAG--AGGGAATCT-
1 GTGACACGCCAGAGTTA-AGAGT-TG
* *
14045979 GTG-CACGTCAGAGTTCAGAGTTG
1 GTGACACGCCAGAGTTAAGAGTTG
14046002 GTGACACGCCA
1 GTGACACGCCA
14046013 TGGTCATGTT
Statistics
Matches: 60, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
21 1 0.02
22 13 0.22
23 17 0.28
24 29 0.48
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (24 bp):
GTGACACGCCAGAGTTAAGAGTTG
Found at i:14046065 original size:52 final size:53
Alignment explanation
Indices: 14046003--14046121 Score: 170
Period size: 53 Copynumber: 2.3 Consensus size: 53
14045993 TCAGAGTTGG
* *
14046003 TGACACGCCATGGTCAT-GTTTAGAGTGTGTGACATGGCATTACTTGAA-AAGC
1 TGACACGCCATGGTCATGGTTTAGAGTGCGTGACATGGCAGTACTT-AAGAAGC
* *
14046055 TGACACGCCATGGTCATGGTTTAGAGTGCGTGACATGGCAGTGCTTAAGCAGC
1 TGACACGCCATGGTCATGGTTTAGAGTGCGTGACATGGCAGTACTTAAGAAGC
*
14046108 TGACACGTCATGGT
1 TGACACGCCATGGT
14046122 TTGAAATAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
52 19 0.32
53 41 0.68
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (53 bp):
TGACACGCCATGGTCATGGTTTAGAGTGCGTGACATGGCAGTACTTAAGAAGC
Found at i:14046633 original size:31 final size:31
Alignment explanation
Indices: 14046590--14047071 Score: 525
Period size: 31 Copynumber: 15.5 Consensus size: 31
14046580 TAGTTATTAA
14046590 CGTGTGACAGCATTTTACTTGATATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* *
14046621 CGTGTGATAGCATTTTACTTGATATGCATGT
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * * * *
14046652 CGTGTCATAGAATTTTAATTGTTATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* *
14046683 CGTTTGACAGCATATTACTTGATATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * * *
14046714 CGTGTAAAAACATTTTACTTGATATGCATGT
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * ** *
14046745 TGTGTCACAAAATTTTACTTGTTATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* *
14046776 CGTTTGACAGCATATTACTTGATATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* *
14046807 CGTGTGATAGCCTTTTACTTGATATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* *
14046838 CGTATGACAGCATTTTACTTGATATGCATGT
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * * *
14046869 CATGTCACAGAATTTTACTTGTTATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * *
14046900 CGTTTGACAGCATTTTAATTGTTATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * *
14046931 CGTTTGACAGCATTTTACTTGATATGCAAGAT
1 CGTGTGACAGCATTTTACTTGATATGCATG-G
* *
14046963 CGTGTCACAAG-ATTTTACTTGTTATGCATGG
1 CGTGTGAC-AGCATTTTACTTGATATGCATGG
* * * *
14046994 CGTTTAACAGCATTTTACTTGTTATACATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * *
14047025 CGTGTCACAACATTTTACTTGTTATGCATGG
1 CGTGTGACAGCATTTTACTTGATATGCATGG
* * *
14047056 CATGTCACAACATTTT
1 CGTGTGACAGCATTTT
14047072 GATTACAATG
Statistics
Matches: 379, Mismatches: 69, Indels: 6
0.83 0.15 0.01
Matches are distributed among these distances:
30 2 0.01
31 352 0.93
32 23 0.06
33 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (31 bp):
CGTGTGACAGCATTTTACTTGATATGCATGG
Found at i:14047083 original size:31 final size:31
Alignment explanation
Indices: 14046965--14047101 Score: 114
Period size: 31 Copynumber: 4.4 Consensus size: 31
14046955 TGCAAGATCG
* *** *
14046965 TGTCACAAGATTTTACTTGTTATGCATGGCG
1 TGTCACAACATTTTACTTACAATGCATGGCA
* * * *** * *
14046996 TTTAACAGCATTTTACTTGTTATACATGGCG
1 TGTCACAACATTTTACTTACAATGCATGGCA
***
14047027 TGTCACAACATTTTACTTGTTATGCATGGCA
1 TGTCACAACATTTTACTTACAATGCATGGCA
14047058 TGTCACAACATTTTGA-TTACAATGCATGGCA
1 TGTCACAACATTTT-ACTTACAATGCATGGCA
14047089 TGTCACAACATTT
1 TGTCACAACATTT
14047102 ATTCCTTATA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
31 91 0.99
32 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (31 bp):
TGTCACAACATTTTACTTACAATGCATGGCA
Found at i:14048944 original size:156 final size:154
Alignment explanation
Indices: 14048733--14049228 Score: 593
Period size: 156 Copynumber: 3.2 Consensus size: 154
14048723 ATTTATCGAG
* * * * * * * *
14048733 TAACACAGTAATTTATGTAATTACAATTTAC-AGAAGTGAAGACAGGTCCTCAAGCACCGATCGG
1 TAACACAGTTATATATGTAATTGCAGTTTGCGA-AAGCGACGACAGGTCCTAAAGCACCGATCGG
* * * ** *
14048797 TCCAGCCCAACTGCAGACAGCTAACGAGCTGGCAATAAGGATATCAAAGTTGTAACGGTTAATGT
65 TCC-GCCCAAC-GCAGACTGCTAACGAGCCGACGGTAAGGATATTAAAGTTGTAACGGTTAATGT
*
14048862 TCAACAATTCCAAAAATGATTATTGAA
128 TCAACAATTCCATAAATGATTATTGAA
*
14048889 TAACACAGTTATATATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCCTAAAGCACCGATCAGT
1 TAACACAGTTATATATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCCTAAAGCACCGATCGGT
* * *
14048954 CCGGCTCAACCACAGACTGCTAACGAGCCGACGGTAAGGATATTAAAGTTGTAACAGTTAATGTT
66 CC-GCCCAA-CGCAGACTGCTAACGAGCCGACGGTAAGGATATTAAAGTTGTAACGGTTAATGTT
* *
14049019 CAACAAATT-CATACATGATTACTGAA
129 CAAC-AATTCCATAAATGATTATTGAA
* * * * * * *
14049045 TAACACAGTTAAATATATAATTGCAGTATGCGAAAGCGACAACAGGTCCTGAAGCACCAATCGAT
1 TAACACAGTTATATATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCCTAAAGCACCGATCGGT
* *
14049110 CCGACTCCATCGCAGACTGCTAACGAGCC-ACCGGTTAGGATATTAAAGTTGTAACGGTTAATGT
66 CCG-C-CCAACGCAGACTGCTAACGAGCCGA-CGGTAAGGATATTAAAGTTGTAACGGTTAATGT
*
14049174 TCAACAATTCCATATATGATTATTGAA
128 TCAACAATTCCATAAATGATTATTGAA
* *
14049201 TAACACAGTTATATATGTTATTGTAGTT
1 TAACACAGTTATATATGTAATTGCAGTT
14049229 GACCCAGTCG
Statistics
Matches: 291, Mismatches: 42, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
155 6 0.02
156 277 0.95
157 8 0.03
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (154 bp):
TAACACAGTTATATATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCCTAAAGCACCGATCGGT
CCGCCCAACGCAGACTGCTAACGAGCCGACGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCA
ACAATTCCATAAATGATTATTGAA
Found at i:14049691 original size:62 final size:62
Alignment explanation
Indices: 14049582--14049817 Score: 339
Period size: 62 Copynumber: 3.8 Consensus size: 62
14049572 ATGTTATTTA
* * * ** * *
14049582 TGGCGTGTCA-CAACGTTTGATTTTGATATGCATGGCGTGTCAGAACATTTTGTTTATTTTCCT
1 TGGCGTGTCACCAA-GTTT-ATCTTGTTATGCATGGCGTGTCACAACATTTTCCTCATTATCCT
* * **
14049645 TGGTGTGTCACCAAGTTTATCTTATTATGCATGGCGTGTCACAACATTTTCCTGGTTATCCT
1 TGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTCCTCATTATCCT
14049707 TGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTCCTCATTATCCT
1 TGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTCCTCATTATCCT
*
14049769 TGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACGACATTT
1 TGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTT
14049818 ACTTGTTTTA
Statistics
Matches: 157, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
62 141 0.90
63 13 0.08
64 3 0.02
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (62 bp):
TGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTCCTCATTATCCT
Found at i:14049765 original size:93 final size:92
Alignment explanation
Indices: 14049668--14049848 Score: 215
Period size: 93 Copynumber: 2.0 Consensus size: 92
14049658 AGTTTATCTT
* *
14049668 ATTATGCATGGCGTGTCA-CAACATTT-TCCTGGTTATCCTTGGCGTGTCACCA-AGTTTATCTT
1 ATTATCCATGGCGTGTCACCAA-ATTTAT-CTGGTTATCCATGGCGTGTCACCACA-TTTA-CTT
*
14049730 GTTATGCATGGCGTGTCACAACATTTTCCTC
62 GTTATACATGGCGTGTCACAACATTTTCCTC
* * * * * *
14049761 ATTATCCTTGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACGACATTTACTTGTTT
1 ATTATCCATGGCGTGTCACCAAATTTATCTGGTTATCCATGGCGTGTCACCACATTTACTTGTTA
*
14049826 TACATGGCGTGTGACAACATTTT
66 TACATGGCGTGTCACAACATTTT
14049849 ACTTGGTATT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
92 27 0.36
93 43 0.57
94 5 0.07
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (92 bp):
ATTATCCATGGCGTGTCACCAAATTTATCTGGTTATCCATGGCGTGTCACCACATTTACTTGTTA
TACATGGCGTGTCACAACATTTTCCTC
Found at i:14049853 original size:31 final size:31
Alignment explanation
Indices: 14049555--14049853 Score: 194
Period size: 31 Copynumber: 9.6 Consensus size: 31
14049545 CAGCTTTAGT
* **
14049555 GTGTCACAACATTATA-TATGTTATTTATGGC
1 GTGTCACAACATTTTACT-TGTTATCCATGGC
* * * * *
14049586 GTGTCACAACGTTTGATTTTGATATGCATGGC
1 GTGTCACAACATTTTA-CTTGTTATCCATGGC
* ** * * * *
14049618 GTGTCAGAACATTTTGTTTATTTTCCTTGGT
1 GTGTCACAACATTTTACTTGTTATCCATGGC
* * * *
14049649 GTGTCACCA-AGTTTATCTTATTATGCATGGC
1 GTGTCACAACATTTTA-CTTGTTATCCATGGC
* * *
14049680 GTGTCACAACATTTTCCTGGTTATCCTTGGC
1 GTGTCACAACATTTTACTTGTTATCCATGGC
* * *
14049711 GTGTCACCA-AGTTTATCTTGTTATGCATGGC
1 GTGTCACAACATTTTA-CTTGTTATCCATGGC
* ** *
14049742 GTGTCACAACATTTTCCTCATTATCCTTGGC
1 GTGTCACAACATTTTACTTGTTATCCATGGC
* * *
14049773 GTGTCACCA-AGTTTATCTTGTTATGCATGGC
1 GTGTCACAACATTTTA-CTTGTTATCCATGGC
* * *
14049804 GTGTCACGACA-TTTACTTGTTTTACATGGC
1 GTGTCACAACATTTTACTTGTTATCCATGGC
*
14049834 GTGTGACAACATTTTACTTG
1 GTGTCACAACATTTTACTTG
14049854 GTATTTTATA
Statistics
Matches: 202, Mismatches: 57, Indels: 18
0.73 0.21 0.06
Matches are distributed among these distances:
30 34 0.17
31 136 0.67
32 31 0.15
33 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (31 bp):
GTGTCACAACATTTTACTTGTTATCCATGGC
Found at i:14051399 original size:16 final size:16
Alignment explanation
Indices: 14051352--14051402 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
14051342 TAAATTTTTT
* * *
14051352 TACACAATTCATTTTA
1 TACACATTTTATTGTA
14051368 TACACATTTT-TTGTA
1 TACACATTTTATTGTA
14051383 TACACATTTTATTGTA
1 TACACATTTTATTGTA
14051399 TACA
1 TACA
14051403 ATTCATTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
15 14 0.45
16 17 0.55
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (16 bp):
TACACATTTTATTGTA
Found at i:14051410 original size:14 final size:15
Alignment explanation
Indices: 14051352--14051412 Score: 61
Period size: 16 Copynumber: 4.0 Consensus size: 15
14051342 TAAATTTTTT
*
14051352 TACACAATTCATTTTA
1 TACAC-ATTCATTGTA
**
14051368 TACACATTTTTTGTA
1 TACACATTCATTGTA
*
14051383 TACACATTTTATTGTA
1 TACACA-TTCATTGTA
14051399 TACA-ATTCATTGTA
1 TACACATTCATTGTA
14051413 AACAGATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
14 8 0.21
15 14 0.36
16 17 0.44
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.48
Consensus pattern (15 bp):
TACACATTCATTGTA
Found at i:14051784 original size:55 final size:55
Alignment explanation
Indices: 14051705--14051811 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
14051695 GTGTCAGCCG
*
14051705 ATAAATCTGCTTCCACTCAATGTGTCAGAACAATTGGGCCGTGGCGTGTCACTAC
1 ATAAATCTGCTTCCACTCAATGTGTCAGAACAATTGGGCCGTCGCGTGTCACTAC
* * ** * * *
14051760 ATAAATCTGCTTCTAGTCGGTGTGTCATAAGAATTGGGCCTTCGCGTGTCAC
1 ATAAATCTGCTTCCACTCAATGTGTCAGAACAATTGGGCCGTCGCGTGTCAC
14051812 CCTAGGTTGG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (55 bp):
ATAAATCTGCTTCCACTCAATGTGTCAGAACAATTGGGCCGTCGCGTGTCACTAC
Found at i:14052085 original size:31 final size:31
Alignment explanation
Indices: 14052045--14052344 Score: 339
Period size: 31 Copynumber: 9.7 Consensus size: 31
14052035 ACACACCAGA
* * * *
14052045 ACTTGTTATGCATGGTGGGTCAAAACAATTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* *
14052076 AATTGTTATGCATGGCGTGTCAGAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * *
14052107 GCTTGTTATCCTTGGCGTGTCACAACCTTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* *
14052138 ACTTGTTATGCATGGTGTGTCAAAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * *
14052169 GCTTGTTATCCTTGGCGTGTCACAACCTTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
*
14052200 ACTTGTTATTCATGGCGTGTCACAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
***
14052231 ACTTGTTATGCATGGCGTGTCATTTCATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * *
14052262 TCTTGTTATGAATGGCGTGTTACAATATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * * *
14052293 ATTTGATATGCACGGCGTGTGACAACATTTA
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
14052324 ACTTGTTATGCATGGCGTGTC
1 ACTTGTTATGCATGGCGTGTC
14052345 TCACCTTTAT
Statistics
Matches: 219, Mismatches: 50, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 219 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (31 bp):
ACTTGTTATGCATGGCGTGTCACAACATTTT
Found at i:14055264 original size:72 final size:72
Alignment explanation
Indices: 14055129--14055269 Score: 187
Period size: 72 Copynumber: 2.0 Consensus size: 72
14055119 TAGTCAACCC
* * * * *
14055129 TGACAAGTCAAAGGCAAGGAAACGTCAAGATTACATAGCCATAGTTGACTCTGGAGAAGGCATAG
1 TGACAAGTCAAAGGCAAGAAAAAGTCAAGATTACATAGCCATAGCTGACTATAGAGAAGGCATAG
14055194 TCGATCT
66 TCGATCT
* *
14055201 TGACAAGTCAAAGGCAAGAAAAAGTCAAGATTACATGGCCATAGCCT-ACTATATAGGAA-GCAT
1 TGACAAGTCAAAGGCAAGAAAAAGTCAAGATTACATAGCCATAG-CTGACTATAGA-GAAGGCAT
14055264 AGTCGA
64 AGTCGA
14055270 CTATAGCAGC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
72 56 0.93
73 4 0.07
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (72 bp):
TGACAAGTCAAAGGCAAGAAAAAGTCAAGATTACATAGCCATAGCTGACTATAGAGAAGGCATAG
TCGATCT
Found at i:14066391 original size:110 final size:110
Alignment explanation
Indices: 14066174--14066393 Score: 280
Period size: 111 Copynumber: 2.0 Consensus size: 110
14066164 ATATTCATAC
* * * * * *
14066174 ATAAGCTCAAAGAAATTGAAACAACTATCAAAATCATCATCAAAATATAAAAATTAAGATTAATT
1 ATAAGCTAAAAGAAATTGAAACAACAATCAAAATCATCATCAAAACATAAAAATCAAAACTAATT
* * *
14066239 CTCATTCATGTTAACAATAAAAAAATGTCAATAAAAACATGCCAT
66 CCCATACATGTTAACAATAAAAAAATGTCAACAAAAACATGCCAT
* * * *
14066284 ATAAGCTAAAAGAAATTGAAACAAACAATCAAAATCATTATCAAAGCGTAATAATCAAAACTAAT
1 ATAAGCTAAAAGAAATTGAAAC-AACAATCAAAATCATCATCAAAACATAAAAATCAAAACTAAT
* * *
14066349 TCCCATACATGTTTACAAT-AAAAATTGTTAACAAAAACATGCCAT
65 TCCCATACATGTTAACAATAAAAAAATGTCAACAAAAACATGCCAT
14066394 TCTAACATAC
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
110 44 0.47
111 49 0.53
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.25
Consensus pattern (110 bp):
ATAAGCTAAAAGAAATTGAAACAACAATCAAAATCATCATCAAAACATAAAAATCAAAACTAATT
CCCATACATGTTAACAATAAAAAAATGTCAACAAAAACATGCCAT
Found at i:14071028 original size:19 final size:19
Alignment explanation
Indices: 14071004--14071041 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14070994 CCATTTAACT
*
14071004 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
14071023 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
14071042 GGTTTGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:14074359 original size:61 final size:61
Alignment explanation
Indices: 14074210--14074451 Score: 335
Period size: 61 Copynumber: 4.0 Consensus size: 61
14074200 AGACATCATC
*
14074210 ACCTACTCGTGGAAACTGCCCACGCCA-CCATATATAAATCGGGGCTTCAGGTCCCCC-TTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCCA-ATATAAATCGGGGCTTCAGGTCCCCCTTTT
* * ** * *
14074270 ACCTACTCGTGGGATCTGCCCACACCACCCAATATAAATCTAGACTTCAAGTCCCCCTTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTTT
* *
14074331 ACCTACTCGTGGGAACTGCCCACGCCACCCAACATAAATCGGGGCTTCAGGTCCCCTTTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTTT
** * * *
14074392 ACCTACTCGTGGGAACTAACCACGTCACCCAATATAAATCAGGGCTTTAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTT
14074452 ACAATCAAAT
Statistics
Matches: 158, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
60 46 0.29
61 112 0.71
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24
Consensus pattern (61 bp):
ACCTACTCGTGGGAACTGCCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTTT
Found at i:14074453 original size:121 final size:121
Alignment explanation
Indices: 14074210--14074431 Score: 347
Period size: 121 Copynumber: 1.8 Consensus size: 121
14074200 AGACATCATC
*
14074210 ACCTACTCGTGGAAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCCTTTACCTA
1 ACCTACTCGTGGAAACTGCCCACGCCACCATACATAAATCGGGGCTTCAGGTCCCCCTTTACCTA
* **
14074275 CTCGTGGGATCTGCCCACACCACCCAATATAAATCTAGACTTCAAGTCCCCCTTTT
66 CTCGTGGGAACTAACCACACCACCCAATATAAATCTAGACTTCAAGTCCCCCTTTT
* *
14074331 ACCTACTCGTGGGAACTGCCCACGCCACCCA-ACATAAATCGGGGCTTCAGGTCCCCTTTTTACC
1 ACCTACTCGTGGAAACTGCCCACGCCA-CCATACATAAATCGGGGCTTCAGGTCCCC-CTTTACC
**
14074395 TACTCGTGGGAACTAACCACGTCACCCAATATAAATC
64 TACTCGTGGGAACTAACCACACCACCCAATATAAATC
14074432 AGGGCTTTAG
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
121 50 0.55
122 41 0.45
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (121 bp):
ACCTACTCGTGGAAACTGCCCACGCCACCATACATAAATCGGGGCTTCAGGTCCCCCTTTACCTA
CTCGTGGGAACTAACCACACCACCCAATATAAATCTAGACTTCAAGTCCCCCTTTT
Found at i:14074806 original size:2 final size:2
Alignment explanation
Indices: 14074799--14074852 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
14074789 TTGTTTCCCN
14074799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
14074841 AT AT AT TT AT AT
1 AT AT AT AT AT AT
14074853 TATGAAGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:14075257 original size:31 final size:31
Alignment explanation
Indices: 14075221--14075317 Score: 133
Period size: 31 Copynumber: 3.1 Consensus size: 31
14075211 TTTTTCTTTT
* *
14075221 TTCTCCTCTGTCGCTGCTCCTTCTTTCCTTC
1 TTCTCCTCTGTCGCTGCTCTTTCTCTCCTTC
*
14075252 TTCTCCTCTG-CTGTTGCTCTTTCTCTCCTTC
1 TTCTCCTCTGTC-GCTGCTCTTTCTCTCCTTC
* *
14075283 TTCTCCTCTGTCGCTACTCTTTCTCTCATTC
1 TTCTCCTCTGTCGCTGCTCTTTCTCTCCTTC
14075314 TTCT
1 TTCT
14075318 TCTTTTTCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
30 1 0.02
31 56 0.97
32 1 0.02
ACGTcount: A:0.02, C:0.39, G:0.08, T:0.51
Consensus pattern (31 bp):
TTCTCCTCTGTCGCTGCTCTTTCTCTCCTTC
Found at i:14075351 original size:17 final size:18
Alignment explanation
Indices: 14075312--14075355 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
14075302 TTTCTCTCAT
*
14075312 TCTTCTTCTTTTTCTTTC
1 TCTTCTTCTTTTCCTTTC
14075330 TCTTCTT-TTTTCCTTT-
1 TCTTCTTCTTTTCCTTTC
14075346 TCCTTCTTCT
1 T-CTTCTTCT
14075356 CCTCATCGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 14 0.61
18 8 0.35
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (18 bp):
TCTTCTTCTTTTCCTTTC
Found at i:14076746 original size:2 final size:2
Alignment explanation
Indices: 14076739--14076768 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14076729 ATATACAATC
14076739 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14076769 GTAGTCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14078303 original size:22 final size:22
Alignment explanation
Indices: 14078278--14078323 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
14078268 GTTGGGTGCT
14078278 AAGAAGTTTAAGCTTGGATACA
1 AAGAAGTTTAAGCTTGGATACA
*
14078300 AAGAAGTTTAAGCTTGGGTACA
1 AAGAAGTTTAAGCTTGGATACA
14078322 AA
1 AA
14078324 AAGAAGAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (22 bp):
AAGAAGTTTAAGCTTGGATACA
Found at i:14089351 original size:18 final size:18
Alignment explanation
Indices: 14089328--14089364 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14089318 GTTTAATACT
*
14089328 TAAAAAAAGTTAATTATA
1 TAAAAAAAGTTAAATATA
*
14089346 TAAAAAAATTTAAATATA
1 TAAAAAAAGTTAAATATA
14089364 T
1 T
14089365 TTTATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAAAAAGTTAAATATA
Found at i:14092921 original size:55 final size:54
Alignment explanation
Indices: 14092789--14092934 Score: 175
Period size: 55 Copynumber: 2.6 Consensus size: 54
14092779 CTAGCGTATT
* * * * * *
14092789 GTGGGTTAACTAGTTATTTAGGTTGTTAGCATGTCATGGTTGTTCCTGGGGTGTG
1 GTGGGTTAACTGGTTTTTTGGGTTTTTA-CGTGTCATGGTTGTTCCTGGGGTGTC
** * *
14092844 GTGGGTTAACTGAATTTATGGGTTTTTGACGTGTCATGGTTGTTCCTGGTGTGTC
1 GTGGGTTAACTGGTTTTTTGGGTTTTT-ACGTGTCATGGTTGTTCCTGGGGTGTC
14092899 GTGGGTTAACTGGTTTTTTGGGTTTTTAACGTGTCA
1 GTGGGTTAACTGGTTTTTTGGGTTTTT-ACGTGTCA
14092935 CGGATGTTGG
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
55 75 0.99
56 1 0.01
ACGTcount: A:0.14, C:0.10, G:0.33, T:0.44
Consensus pattern (54 bp):
GTGGGTTAACTGGTTTTTTGGGTTTTTACGTGTCATGGTTGTTCCTGGGGTGTC
Found at i:14092998 original size:23 final size:23
Alignment explanation
Indices: 14092971--14093077 Score: 178
Period size: 23 Copynumber: 4.7 Consensus size: 23
14092961 TTACAGTGAT
14092971 TGGCGTGTCACGACAGTAATGCA
1 TGGCGTGTCACGACAGTAATGCA
14092994 TGGCGTGTCACGACAGTAATGCA
1 TGGCGTGTCACGACAGTAATGCA
*
14093017 TGGCGTGTCACGACAGTGATGCA
1 TGGCGTGTCACGACAGTAATGCA
* * *
14093040 TGGCGTGTCACGATATTGATGCA
1 TGGCGTGTCACGACAGTAATGCA
14093063 TGGCGTGTCACGACA
1 TGGCGTGTCACGACA
14093078 TTTGACTTGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 80 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (23 bp):
TGGCGTGTCACGACAGTAATGCA
Found at i:14093093 original size:31 final size:31
Alignment explanation
Indices: 14093058--14093132 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
14093048 CACGATATTG
*
14093058 ATGCATGGCGTGTCACGACATTTGAC-TTGAT
1 ATGCATGGCGTGTCACAACATTTGACGTT-AT
* *
14093089 ATGCATGGCGTGTTACAACATTTTACGTTAT
1 ATGCATGGCGTGTCACAACATTTGACGTTAT
*
14093120 TTGCATGGCGTGT
1 ATGCATGGCGTGT
14093133 AATAACACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.36
Consensus pattern (31 bp):
ATGCATGGCGTGTCACAACATTTGACGTTAT
Found at i:14106720 original size:22 final size:22
Alignment explanation
Indices: 14106695--14106772 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 22
14106685 AATCACCGTG
*
14106695 TGATTAGTTTTTAGTCATTATA
1 TGATTAGTTTTTAGTCATTACA
* *
14106717 TGATT-GGTTTTAGAT-ATTACG
1 TGATTAGTTTTTAG-TCATTACA
* * *
14106738 TGACTAGTTTTTAGACATTACG
1 TGATTAGTTTTTAGTCATTACA
14106760 TGATT-GATTTTTA
1 TGATTAG-TTTTTA
14106773 AACAATGCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
21 16 0.36
22 29 0.64
ACGTcount: A:0.26, C:0.06, G:0.18, T:0.50
Consensus pattern (22 bp):
TGATTAGTTTTTAGTCATTACA
Found at i:14106932 original size:78 final size:74
Alignment explanation
Indices: 14106807--14107030 Score: 295
Period size: 78 Copynumber: 3.0 Consensus size: 74
14106797 CTTACTAACA
* * * *
14106807 AGTCACGCAATATCTATCAACTAGTCACGTAATACCTTATCAAAAACTAGTCACGCAATGCCTTA
1 AGTCACACAATACCTATAAACTAGTCACGCAATACCTTATCAAAAACTAGTCACGCAATGCCTTA
14106872 TCAAAAACT
66 TCAAAAACT
* * * * *
14106881 AGTCACACAATACTTTATCAAAAACTAGTCACACAATACTTTATCAAAAACTAGTAACGCAATAC
1 AGTCACACAATAC-CTAT---AAACTAGTCACGCAATACCTTATCAAAAACTAGTCACGCAATGC
14106946 CTTATCAAAAACT
62 CTTATCAAAAACT
* * * *
14106959 AGTCACACAATGCCTATTAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATGCCTTA
1 AGTCACACAATACCTATAAACTAGTCACGCAATACCTTATCAAAAACTAGTCACGCAATGCCTTA
14107024 TCAAAAA
66 TCAAAAA
14107031 TCAGTCATGT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
74 59 0.46
75 3 0.02
77 3 0.02
78 63 0.49
ACGTcount: A:0.41, C:0.25, G:0.09, T:0.25
Consensus pattern (74 bp):
AGTCACACAATACCTATAAACTAGTCACGCAATACCTTATCAAAAACTAGTCACGCAATGCCTTA
TCAAAAACT
Found at i:14106992 original size:22 final size:23
Alignment explanation
Indices: 14106784--14107102 Score: 125
Period size: 26 Copynumber: 13.3 Consensus size: 23
14106774 ACAATGCCTA
* * *
14106784 AGTCACACAATGCCT-TACTAACA
1 AGTCACGCAATGCCTATA-AAACT
** *
14106807 AGTCACGCAATATCTAT-CAACT
1 AGTCACGCAATGCCTATAAAACT
* *
14106829 AGTCACGTAATACCTTATCAAAAACT
1 AGTCACGCAATGCC-TAT--AAAACT
14106855 AGTCACGCAATGCCTTATCAAAAACT
1 AGTCACGCAATGCC-TAT--AAAACT
* * *
14106881 AGTCACACAATACTTTATCAAAAACT
1 AGTCACGCAATGC-CTAT--AAAACT
* * *
14106907 AGTCACACAATACTTTATCAAAAACT
1 AGTCACGCAATGC-CTAT--AAAACT
* *
14106933 AGTAACGCAATACCTTATCAAAAACT
1 AGTCACGCAATGCC-TAT--AAAACT
* *
14106959 AGTCACACAATGCCTAT-TAACT
1 AGTCACGCAATGCCTATAAAACT
14106981 AGTCACGCAATGCCTTATCAGAAACT
1 AGTCACGCAATGCC-TAT-A-AAACT
*
14107007 AGTCACGCAATGCCTTATCAAAAAT
1 AGTCACGCAATGCC-TAT-AAAACT
* * * *
14107032 CAGTCATGTAATG-C--TCAAATT
1 -AGTCACGCAATGCCTATAAAACT
* ** *
14107053 CAGTCACGTAATATCTA-AAATC-
1 -AGTCACGCAATGCCTATAAAACT
14107075 AGTCACGCAATGCCTA-AAAACT
1 AGTCACGCAATGCCTATAAAACT
14107097 AGTCAC
1 AGTCAC
14107103 ATAATTTTTA
Statistics
Matches: 244, Mismatches: 36, Indels: 33
0.78 0.12 0.11
Matches are distributed among these distances:
21 32 0.13
22 40 0.16
23 20 0.08
24 1 0.00
25 8 0.03
26 143 0.59
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (23 bp):
AGTCACGCAATGCCTATAAAACT
Done.