Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 39 of 59
Found at i:14107045 original size:26 final size:26
Alignment explanation
Indices: 14106825--14107030 Score: 267
Period size: 26 Copynumber: 8.1 Consensus size: 26
14106815 AATATCTATC
* *
14106825 AACTAGTCACGTAATACCTTATCAAA
1 AACTAGTCACGCAATGCCTTATCAAA
14106851 AACTAGTCACGCAATGCCTTATCAAA
1 AACTAGTCACGCAATGCCTTATCAAA
* * *
14106877 AACTAGTCACACAATACTTTATCAAA
1 AACTAGTCACGCAATGCCTTATCAAA
* * *
14106903 AACTAGTCACACAATACTTTATCAAA
1 AACTAGTCACGCAATGCCTTATCAAA
* *
14106929 AACTAGTAACGCAATACCTTATCAAA
1 AACTAGTCACGCAATGCCTTATCAAA
* *
14106955 AACTAGTCACACAATGCC-TAT---T
1 AACTAGTCACGCAATGCCTTATCAAA
*
14106977 AACTAGTCACGCAATGCCTTATCAGA
1 AACTAGTCACGCAATGCCTTATCAAA
14107003 AACTAGTCACGCAATGCCTTATCAAA
1 AACTAGTCACGCAATGCCTTATCAAA
14107029 AA
1 AA
14107031 TCAGTCATGT
Statistics
Matches: 161, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.11
23 3 0.02
25 3 0.02
26 138 0.86
ACGTcount: A:0.42, C:0.25, G:0.09, T:0.25
Consensus pattern (26 bp):
AACTAGTCACGCAATGCCTTATCAAA
Found at i:14107091 original size:21 final size:20
Alignment explanation
Indices: 14107027--14107107 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 20
14107017 TGCCTTATCA
*
14107027 AAAATCAGTCATGTAATGCT
1 AAAATCAGTCACGTAATGCT
* *
14107047 CAAATTCAGTCACGTAATATCT
1 -AAAATCAGTCACGTAAT-GCT
*
14107069 AAAATCAGTCACGCAATGCCT
1 AAAATCAGTCACGTAATG-CT
* *
14107090 AAAAACTAGTCACATAAT
1 AAAATC-AGTCACGTAAT
14107108 TTTTAAAAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 37 0.77
22 11 0.23
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (20 bp):
AAAATCAGTCACGTAATGCT
Found at i:14107325 original size:9 final size:9
Alignment explanation
Indices: 14107311--14107338 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14107301 AAAAATTACT
14107311 TCAAAATGC
1 TCAAAATGC
14107320 TCAAAATGC
1 TCAAAATGC
14107329 TCAAAATGC
1 TCAAAATGC
14107338 T
1 T
14107339 TAAACGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (9 bp):
TCAAAATGC
Found at i:14107348 original size:59 final size:59
Alignment explanation
Indices: 14107205--14107348 Score: 143
Period size: 59 Copynumber: 2.4 Consensus size: 59
14107195 AACAAATATG
* *
14107205 AATGCTCAAAATG-TTCGAAAGTTTTTCTTCATATATCAAAAATCACTCTAAAATGTTTTAA
1 AATGCTCAAAATGCTT--AAAG-TTTTCTTCATATATCAAAAATCACTCTAAAATGTCTCAA
* * * * *
14107266 AATACTCAAAA-GCTCACAAGTTTTCTTCGTGTATCAAAAATTACT-TCAAAATG-CTCAA
1 AATGCTCAAAATGCTTA-AAGTTTTCTTCATATATCAAAAATCACTCT-AAAATGTCTCAA
14107324 AATGCTCAAAATGCTTAAACGTTTT
1 AATGCTCAAAATGCTTAAA-GTTTT
14107349 TCTTTCCGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
58 16 0.23
59 38 0.55
60 4 0.06
61 11 0.16
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (59 bp):
AATGCTCAAAATGCTTAAAGTTTTCTTCATATATCAAAAATCACTCTAAAATGTCTCAA
Found at i:14109851 original size:21 final size:22
Alignment explanation
Indices: 14109808--14109848 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
14109798 TTGAAACTGC
*
14109808 AAAAGAAAAAATGAGACAAAAG
1 AAAAGAAAAAAGGAGACAAAAG
14109830 AAAA-AAAAAAGGA-ACAAAA
1 AAAAGAAAAAAGGAGACAAAA
14109849 AGAGAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.78, C:0.05, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAAAGGAGACAAAAG
Found at i:14112149 original size:23 final size:24
Alignment explanation
Indices: 14112109--14112153 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
14112099 AATTTTTTTA
14112109 TTTTTTATATATTCTTATATTATT
1 TTTTTTATATATTCTTATATTATT
* *
14112133 TTTTTTATCT-TTTTTATATTA
1 TTTTTTATATATTCTTATATTA
14112154 AAAATAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTTATATATTCTTATATTATT
Found at i:14113749 original size:9 final size:9
Alignment explanation
Indices: 14113735--14113764 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14113725 ACACGATTAA
*
14113735 TAACACGTT
1 TAACACGAT
14113744 TAACACGAT
1 TAACACGAT
14113753 TAACACGAT
1 TAACACGAT
14113762 TAA
1 TAA
14113765 ATAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (9 bp):
TAACACGAT
Found at i:14113847 original size:23 final size:24
Alignment explanation
Indices: 14113821--14113873 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
14113811 ATCTATAATT
*
14113821 ATAAAAATAATTATAACAAA-ATA
1 ATAAAAATAATAATAACAAATATA
* *
14113844 ATAATAATAATAATATCAAATATA
1 ATAAAAATAATAATAACAAATATA
14113868 ATAAAA
1 ATAAAA
14113874 TTTAATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (24 bp):
ATAAAAATAATAATAACAAATATA
Found at i:14113858 original size:12 final size:12
Alignment explanation
Indices: 14113815--14113873 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
14113805 TTTAAAATCT
*
14113815 ATAATTATAAAA
1 ATAATAATAAAA
* *
14113827 ATAATTATAACA
1 ATAATAATAAAA
*
14113839 A-AATAATAATA
1 ATAATAATAAAA
*
14113850 ATAATAATATCAA
1 ATAATAATA-AAA
14113863 AT-ATAATAAAA
1 ATAATAATAAAA
14113874 TTTAATATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 11 0.28
12 25 0.64
13 3 0.08
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAATAATAAAA
Found at i:14114035 original size:18 final size:18
Alignment explanation
Indices: 14114012--14114061 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
14114002 AACGTGTCAT
14114012 GTATACACGTTTAAACAC
1 GTATACACGTTTAAACAC
14114030 GTATACACGTTTAAACAC
1 GTATACACGTTTAAACAC
*
14114048 G-ATAACACGATTAA
1 GTAT-ACACGTTTAA
14114062 GTAAACGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 2 0.07
18 28 0.93
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (18 bp):
GTATACACGTTTAAACAC
Found at i:14114775 original size:15 final size:15
Alignment explanation
Indices: 14114750--14114788 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
14114740 CTCTTTCTCT
*
14114750 TTCTCTACCTTTTCC
1 TTCTCTGCCTTTTCC
*
14114765 TTCTTTGCCTTTTCC
1 TTCTCTGCCTTTTCC
14114780 TTCTCTGCC
1 TTCTCTGCC
14114789 ATTCTCTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.03, C:0.38, G:0.05, T:0.54
Consensus pattern (15 bp):
TTCTCTGCCTTTTCC
Found at i:14116674 original size:102 final size:102
Alignment explanation
Indices: 14116419--14116654 Score: 305
Period size: 103 Copynumber: 2.3 Consensus size: 102
14116409 TTTATTTGGC
* *
14116419 ATTAGGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACTTGACTGAATAT
1 ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATAT
** * *
14116484 ATGTTGAGCGTTGTGTGACAGTTACTACGTGACTAAAT
66 ATGTTGAGCGTTGCATGACAGGTA-TACGTGAATAAAT
* * * *
14116522 ATTACTTGCCTAAATATTTGTTGACCATTGCGTTAGTTCTTTATAGGCATTACGTGACTGAATAT
1 ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATAT
* *
14116587 TTGTT-AGCGTTGCATGACAAGCGT-TACGTGAATTAAT
66 ATGTTGAGCGTTGCATGAC-AG-GTATACGTGAATAAAT
* *
14116624 ATTACGTGACTGAATATTTGTTGAGTATTGC
1 ATTACGTGCCTGAATATTTGTTGAGCATTGC
14116655 ATGACCTATT
Statistics
Matches: 114, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
102 48 0.42
103 65 0.57
104 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (102 bp):
ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATAT
ATGTTGAGCGTTGCATGACAGGTATACGTGAATAAAT
Found at i:14116681 original size:102 final size:102
Alignment explanation
Indices: 14116419--14116682 Score: 291
Period size: 102 Copynumber: 2.6 Consensus size: 102
14116409 TTTATTTGGC
*
14116419 ATTAGGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACT-TGACTGAATA
1 ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTA-TGTGACTGAATA
** * *
14116483 TATGTTGAGCGTTGTGTGACAGTTACTACGTGACTAAAT
65 TATGTTGAGCGTTGCATGACAGGTA-TACGTGAATAAAT
* * * * *
14116522 ATTACTTGCCTAAATATTTGTTGACCATTGCGTTAGTTCTTTATAGGCATTACGTGACTGAATAT
1 ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTATGTGACTGAATAT
* *
14116587 TTGTT-AGCGTTGCATGACAAGCGT-TACGTGAATTAAT
66 ATGTTGAGCGTTGCATGAC-AG-GTATACGTGAATAAAT
* * * ** * * *
14116624 ATTACGTGACTGAATATTTGTTGAGTATTGCATGACCTATTTGTAGGCATTGTGTGACT
1 ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTATGTGACT
14116683 TTAGCTACCT
Statistics
Matches: 133, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
102 68 0.51
103 64 0.48
104 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.39
Consensus pattern (102 bp):
ATTACGTGCCTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTATGTGACTGAATAT
ATGTTGAGCGTTGCATGACAGGTATACGTGAATAAAT
Found at i:14117248 original size:30 final size:30
Alignment explanation
Indices: 14117212--14117270 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
14117202 GGAGGTGCCT
14117212 TTGAGTGTGAGGGACCAGTTGCACATATTA
1 TTGAGTGTGAGGGACCAGTTGCACATATTA
14117242 TTGAGTGTGAGGGACCAGTTGCACATATT
1 TTGAGTGTGAGGGACCAGTTGCACATATT
14117271 CCAAAAGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (30 bp):
TTGAGTGTGAGGGACCAGTTGCACATATTA
Found at i:14118131 original size:111 final size:108
Alignment explanation
Indices: 14117902--14118312 Score: 412
Period size: 111 Copynumber: 3.6 Consensus size: 108
14117892 GGTGCGTGAC
* * *
14117902 TGACTTGTGCAATTCATGTGTTGCTTT-GAGGCTATTATTCAGTAGTTTTTTAGGTAGTGCATGA
1 TGACTTGTGCAATTCATGTGTTG-TTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGT--TGCGTGA
* * * **
14117966 CTGGTTTTTATATATTACGTTACCTATTGTAGCTAGAGTGGTGGCGAA
63 CTGG-TTTTATATATTGCGTTACTTGTTGTAGCT-GAGTGGTGGCGCG
* *
14118014 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGATT
1 TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGG-TTGCGTGACT
14118079 GGTTTTCATATATTGCGTTACTTGTTGTAGCGTGAGTGGTGGCGCG
65 GGTTTT-ATATATTGCGTTACTTGTTGTAGC-TGAGTGGTGGCGCG
* * * *
14118125 CGACTTGTGCAATCCATGTGTTGTTTAGGGGCTTTTGTTCAATAG-TTTTTAGGGTTGCGTGACC
1 TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTA-GGTTGCGTGA-C
*** * * * * *
14118189 AAATTTTATATATTGCGTGACGTGTTGTTATGTATTGCAAGAATGGTTGCACG
64 TGGTTTTATATATTGCGTTAC---TTG-T-TGTA--GC-TGAGTGGTGGCGCG
* *
14118242 TGACTTGTGCAATTCATGTGTTGTTTAGAAGCTTTTGTTCAGTAGTTTTTTAGGATTGCGTTACT
1 TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGG-TTGCGTGACT
*
14118307 GATTTT
65 GGTTTT
14118313 TATGTATTAC
Statistics
Matches: 252, Mismatches: 32, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
110 31 0.12
111 90 0.36
112 49 0.19
113 4 0.02
114 1 0.00
115 4 0.02
117 60 0.24
118 13 0.05
ACGTcount: A:0.18, C:0.12, G:0.26, T:0.44
Consensus pattern (108 bp):
TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGTTGCGTGACTG
GTTTTATATATTGCGTTACTTGTTGTAGCTGAGTGGTGGCGCG
Found at i:14118278 original size:117 final size:118
Alignment explanation
Indices: 14118116--14118374 Score: 331
Period size: 118 Copynumber: 2.2 Consensus size: 118
14118106 TAGCGTGAGT
* * * ** *
14118116 GGTGGCGCGCGACTTGTGCAATCCATGTGTTGTTTAGGGGCTTTTGTTCAATAG-TTTTTAGGGT
1 GGTGGCACGTGACTTGTGCAATTCATGTGTTGTTTAGAAGCTTTTGTTCAATAGTTTTTTAGGAT
* * * * *
14118180 TGCGTGACCAAATTTTATATATTGCGTGACGTGTTGTTATGTATTGCAAGAAT
66 TGCGTGACCAAATTTTATATATTACGTGACCTGTTATTATATATTGCAAGAAC
* *
14118233 GGTTGCACGTGACTTGTGCAATTCATGTGTTGTTTAGAAGCTTTTGTTCAGTAGTTTTTTAGGAT
1 GGTGGCACGTGACTTGTGCAATTCATGTGTTGTTTAGAAGCTTTTGTTCAATAGTTTTTTAGGAT
* ** * * * *
14118298 TGCGTTACTGATTTTTATGTATTACGTGACCTGTTATTATATATTGCGAGAGC
66 TGCGTGACCAAATTTTATATATTACGTGACCTGTTATTATATATTGCAAGAAC
14118351 GGTGGCACGTGACTTGTGCAATTC
1 GGTGGCACGTGACTTGTGCAATTC
14118375 GCCTCTTGTT
Statistics
Matches: 120, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
117 47 0.39
118 73 0.61
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.41
Consensus pattern (118 bp):
GGTGGCACGTGACTTGTGCAATTCATGTGTTGTTTAGAAGCTTTTGTTCAATAGTTTTTTAGGAT
TGCGTGACCAAATTTTATATATTACGTGACCTGTTATTATATATTGCAAGAAC
Found at i:14118384 original size:118 final size:117
Alignment explanation
Indices: 14118116--14118418 Score: 293
Period size: 118 Copynumber: 2.6 Consensus size: 117
14118106 TAGCGTGAGT
* * * ** * ** *
14118116 GGTGGCGCGCGACTTGTGCAATCCATGTGTTGTTTAGGGGCTTTTGTTCAATAGTTTTTAGGGTT
1 GGTGGCACGTGACTTGTGCAATTCACCTCTTGTTTAGAAGCTTTTGTTCAATAGTTTTTAGGATT
* * * * *
14118181 GCGTGACCAAATTTTATATATTGCGTGACGTGTTGTTATGTATTGCAAGAAT
66 GCGTGACCAAATTTTATATATTACGTGACCTGTTATTATATATTGCAAGAAC
* ** * *
14118233 GGTTGCACGTGACTTGTGCAATTCATGTGTTGTTTAGAAGCTTTTGTTCAGTAGTTTTTTAGGAT
1 GGTGGCACGTGACTTGTGCAATTCACCTCTTGTTTAGAAGCTTTTGTTCAATAG-TTTTTAGGAT
* ** * * * *
14118298 TGCGTTACTGATTTTTATGTATTACGTGACCTGTTATTATATATTGCGAGAGC
65 TGCGTGACCAAATTTTATATATTACGTGACCTGTTATTATATATTGCAAGAAC
* * * * *
14118351 GGTGGCACGTGACTTGTGCAATTCGCCTCTTGTTTA-AGGACGTTTGTTCACTAGTTATTAGGCA
1 GGTGGCACGTGACTTGTGCAATTCACCTCTTGTTTAGAAG-CTTTTGTTCAATAGTTTTTAGG-A
14118415 TTGC
64 TTGC
14118419 ATTAATGTGT
Statistics
Matches: 154, Mismatches: 29, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
117 56 0.36
118 98 0.64
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.41
Consensus pattern (117 bp):
GGTGGCACGTGACTTGTGCAATTCACCTCTTGTTTAGAAGCTTTTGTTCAATAGTTTTTAGGATT
GCGTGACCAAATTTTATATATTACGTGACCTGTTATTATATATTGCAAGAAC
Found at i:14123215 original size:39 final size:39
Alignment explanation
Indices: 14123134--14123215 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
14123124 GTGACTGCGT
*
14123134 CTGCATCTGCATCGCCCGCTAGATCTCCAATTCCATTAA
1 CTGCATCTGCATCGCCCGCTAGATCTCCAACTCCATTAA
* * *
14123173 CTGCATCTGCATCGCCCGCTGGATCTCCAACTGCATTGA
1 CTGCATCTGCATCGCCCGCTAGATCTCCAACTCCATTAA
14123212 CTGC
1 CTGC
14123216 TGGATCTCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.20, C:0.37, G:0.17, T:0.27
Consensus pattern (39 bp):
CTGCATCTGCATCGCCCGCTAGATCTCCAACTCCATTAA
Found at i:14123217 original size:24 final size:24
Alignment explanation
Indices: 14123190--14123249 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
14123180 TGCATCGCCC
14123190 GCTGGATCTCCAACTGCATTGACT
1 GCTGGATCTCCAACTGCATTGACT
14123214 GCTGGATCTCCAACTGCATTGACT
1 GCTGGATCTCCAACTGCATTGACT
*
14123238 GCTGGACCTCCA
1 GCTGGATCTCCA
14123250 TATTCGTCTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.27
Consensus pattern (24 bp):
GCTGGATCTCCAACTGCATTGACT
Found at i:14126189 original size:52 final size:53
Alignment explanation
Indices: 14126130--14126269 Score: 183
Period size: 52 Copynumber: 2.6 Consensus size: 53
14126120 ATGAAAAGCC
* *
14126130 ATGAATGTCCATTCCCTGAAGTGAATGTGACAAATGAGCTACTAAT-AAAATT
1 ATGAATGTCCATTCCCTGAAGTGAATGCGACAAACGAGCTACTAATAAAAATT
* *
14126182 ATGAATGTTCATTCCCTGAAGTAAATGCGACAAACGAGCTACTAATAAAAAATT
1 ATGAATGTCCATTCCCTGAAGTGAATGCGACAAACGAGCTACTAAT-AAAAATT
* * *
14126236 ATAAATCCTTCCATTCCCTAAAGTGAATGCGACA
1 ATGAAT--GTCCATTCCCTGAAGTGAATGCGACA
14126270 TCATTTAATA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 42 0.56
54 11 0.15
56 22 0.29
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (53 bp):
ATGAATGTCCATTCCCTGAAGTGAATGCGACAAACGAGCTACTAATAAAAATT
Found at i:14126411 original size:26 final size:26
Alignment explanation
Indices: 14126381--14126482 Score: 93
Period size: 26 Copynumber: 4.0 Consensus size: 26
14126371 TTTTATTATT
14126381 ATTTTACCA-CAAGAAGTGGATGGATA
1 ATTTTACCATCAA-AAGTGGATGGATA
* * ** * *
14126407 ATTTTATCATCTAAA-TTTAAGAATA
1 ATTTTACCATCAAAAGTGGATGGATA
* *
14126432 ATTTTACCATTAGAAGTGGA-GAGATA
1 ATTTTACCATCAAAAGTGGATG-GATA
14126458 ATTTTACCATCAAAAGTGGATGGAT
1 ATTTTACCATCAAAAGTGGATGGAT
14126483 GCCTTAACTC
Statistics
Matches: 57, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
25 18 0.32
26 36 0.63
27 3 0.05
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (26 bp):
ATTTTACCATCAAAAGTGGATGGATA
Found at i:14127413 original size:20 final size:20
Alignment explanation
Indices: 14127388--14127428 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
14127378 TATTATTTTC
14127388 TATTAAG-TTTCAAAGAAATT
1 TATTAAGATTT-AAAGAAATT
*
14127408 TATTAAGATTTAAAGATATT
1 TATTAAGATTTAAAGAAATT
14127428 T
1 T
14127429 GTTTGAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (20 bp):
TATTAAGATTTAAAGAAATT
Found at i:14129039 original size:10 final size:10
Alignment explanation
Indices: 14129020--14129054 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
14129010 AACAAAACAT
*
14129020 AATTCACCAA
1 AATTCGCCAA
*
14129030 AATTTGCCAA
1 AATTCGCCAA
14129040 AATTCGCCAA
1 AATTCGCCAA
14129050 AATTC
1 AATTC
14129055 TTTTTTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.43, C:0.26, G:0.06, T:0.26
Consensus pattern (10 bp):
AATTCGCCAA
Found at i:14135123 original size:21 final size:23
Alignment explanation
Indices: 14135097--14135139 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
14135087 AAAGCAGCAG
14135097 GAAGAGA-AGG-AAGCATGAGGA
1 GAAGAGACAGGAAAGCATGAGGA
14135118 GAAGAGACAGGAAAAGCATGAG
1 GAAGAGACAGG-AAAGCATGAG
14135140 AAGCGTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
24 9 0.47
ACGTcount: A:0.49, C:0.07, G:0.40, T:0.05
Consensus pattern (23 bp):
GAAGAGACAGGAAAGCATGAGGA
Found at i:14135160 original size:18 final size:18
Alignment explanation
Indices: 14135137--14135237 Score: 175
Period size: 18 Copynumber: 5.6 Consensus size: 18
14135127 GGAAAAGCAT
14135137 GAGAAGCGTGAGAGACAC
1 GAGAAGCGTGAGAGACAC
*
14135155 GAGAAGCGTGAGAGATAC
1 GAGAAGCGTGAGAGACAC
*
14135173 GAGAAGCGTGAGAGACAT
1 GAGAAGCGTGAGAGACAC
*
14135191 GAGAAGCGTGAGAGATAC
1 GAGAAGCGTGAGAGACAC
14135209 GAGAAGCGTGAGAGACAC
1 GAGAAGCGTGAGAGACAC
14135227 GAGAAGCGTGA
1 GAGAAGCGTGA
14135238 ATCTCATGAT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 77 1.00
ACGTcount: A:0.39, C:0.13, G:0.40, T:0.09
Consensus pattern (18 bp):
GAGAAGCGTGAGAGACAC
Found at i:14135178 original size:36 final size:36
Alignment explanation
Indices: 14135137--14135237 Score: 193
Period size: 36 Copynumber: 2.8 Consensus size: 36
14135127 GGAAAAGCAT
14135137 GAGAAGCGTGAGAGACACGAGAAGCGTGAGAGATAC
1 GAGAAGCGTGAGAGACACGAGAAGCGTGAGAGATAC
*
14135173 GAGAAGCGTGAGAGACATGAGAAGCGTGAGAGATAC
1 GAGAAGCGTGAGAGACACGAGAAGCGTGAGAGATAC
14135209 GAGAAGCGTGAGAGACACGAGAAGCGTGA
1 GAGAAGCGTGAGAGACACGAGAAGCGTGA
14135238 ATCTCATGAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 63 1.00
ACGTcount: A:0.39, C:0.13, G:0.40, T:0.09
Consensus pattern (36 bp):
GAGAAGCGTGAGAGACACGAGAAGCGTGAGAGATAC
Found at i:14137942 original size:171 final size:167
Alignment explanation
Indices: 14137654--14137993 Score: 439
Period size: 171 Copynumber: 2.0 Consensus size: 167
14137644 ACACAACAAT
* * *
14137654 AACAACTAATCTTTGCACCGCAACACATTCACTACACAGAACACAGTACAAGAACAACAAACGAA
1 AACAACTAATCTTTGCACCACAACACATTCACAACACAGAACACAATACAAGAACAACAAACGAA
** *
14137719 TCATATATATAAAACATGCTTCTTTGTATATATTGATACAAATTGAAACATGTTCAGTCACACAA
66 TCATATATATAAAACATGCTTCTTCATATATATTGATACAAATTGAAACATGTTCACTCACACAA
* * *
14137784 AATCTCAACATGTTTTTGCAATCTTGAACAACACAATGAC
131 AA--TC-ACATGTTATCGCAATCTTGAACAACAAAATGAC
* * * * * * * * *
14137824 AACACCTAATCTTTGCATCACAACACATTCACAACACATAACGCAATCATAAGAGCAATAAATGC
1 AACAACTAATCTTTGCACCACAACACATTCACAACACAGAACACAAT-ACAAGAACAACAAACGA
* * *
14137889 ATCATATATATAAAGCATGCCTT-TTCATATATATTGATACATATTGCAACATGTTCACTCACAC
65 ATCATATATATAAAACATG-CTTCTTCATATATATTGATACAAATTGAAACATGTTCACTCACAC
14137953 AAAATCACATGTTATCGCAATCTTGAACAACAAAATGAC
129 AAAATCACATGTTATCGCAATCTTGAACAACAAAATGAC
14137992 AA
1 AA
14137994 TAAGAAGTTT
Statistics
Matches: 147, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
168 32 0.22
169 2 0.01
170 40 0.27
171 70 0.48
172 3 0.02
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (167 bp):
AACAACTAATCTTTGCACCACAACACATTCACAACACAGAACACAATACAAGAACAACAAACGAA
TCATATATATAAAACATGCTTCTTCATATATATTGATACAAATTGAAACATGTTCACTCACACAA
AATCACATGTTATCGCAATCTTGAACAACAAAATGAC
Found at i:14152630 original size:38 final size:40
Alignment explanation
Indices: 14152588--14152690 Score: 133
Period size: 38 Copynumber: 2.6 Consensus size: 40
14152578 ATAGTGCCCG
14152588 TGTGCACGATGTGGGGGGATGTACACGAT-G-G-CA-CTGA
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGTCAGCT-A
* **
14152625 TTGTGCACGATGTGAGGGGATGCGCACGATGGTGTCAGCTA
1 -TGTGCACGATGTGGGGGGATGTACACGATGGTGTCAGCTA
14152666 TGTGCACGATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
14152691 TGAGCCGGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
38 26 0.47
39 1 0.02
40 23 0.42
41 3 0.05
42 2 0.04
ACGTcount: A:0.20, C:0.16, G:0.41, T:0.23
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGTGTCAGCTA
Found at i:14157700 original size:20 final size:20
Alignment explanation
Indices: 14157668--14157707 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14157658 TTTGGGAAGC
*
14157668 CATGAATTCACCAT-GAAAA
1 CATGAATTAACCATGGAAAA
14157687 CATGAAATTAACCATGGAAAA
1 CATG-AATTAACCATGGAAAA
14157708 TAAGGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 9 0.50
21 5 0.28
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.20
Consensus pattern (20 bp):
CATGAATTAACCATGGAAAA
Found at i:14158181 original size:19 final size:19
Alignment explanation
Indices: 14158157--14158194 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14158147 ACTTCTTAAC
14158157 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
14158176 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
14158195 AGTCAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:14159706 original size:2 final size:2
Alignment explanation
Indices: 14159699--14159724 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14159689 CTGGACGTGT
14159699 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
14159725 TGAGTGAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14159729 original size:4 final size:4
Alignment explanation
Indices: 14159722--14159755 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
14159712 GAGAGAGAGA
14159722 GAGT GAGT GAGT GAGT GAGT GAGT GAGT GAGT GA
1 GAGT GAGT GAGT GAGT GAGT GAGT GAGT GAGT GA
14159756 TTTCCTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.50, T:0.24
Consensus pattern (4 bp):
GAGT
Found at i:14161662 original size:49 final size:49
Alignment explanation
Indices: 14161600--14161719 Score: 222
Period size: 49 Copynumber: 2.4 Consensus size: 49
14161590 TAATCTTGTG
14161600 TGATGATGATGACCCGGCTATGTGCGAGTAAGGAGTGCGCATAGGCCGA
1 TGATGATGATGACCCGGCTATGTGCGAGTAAGGAGTGCGCATAGGCCGA
*
14161649 TGATGATGATGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAGGCCGA
1 TGATGATGATGACCCGGCTATGTGCGAGTAAGGAGTGCGCATAGGCCGA
*
14161698 TGATGATGATGATCCGGCTATG
1 TGATGATGATGACCCGGCTATG
14161720 ATGACGAATG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (49 bp):
TGATGATGATGACCCGGCTATGTGCGAGTAAGGAGTGCGCATAGGCCGA
Found at i:14162901 original size:43 final size:45
Alignment explanation
Indices: 14162804--14162927 Score: 164
Period size: 43 Copynumber: 2.8 Consensus size: 45
14162794 GGTCGTGATA
* *
14162804 CCAGCTATGTGTGGTGTAGGAGTGCACATGAGCTGATGATGATGAC
1 CCAGCTATGTGCGGTGTGGGAGTGCACATGAGCT-ATGATGATGAC
*
14162850 CTAGCTATGTGCGGTGTGGGAGTGCACATGAG-T-TGATGATGAC
1 CCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTATGATGATGAC
* *
14162893 CCGGCTATGTGCGAGT-AGGGAGTGCACATGAGCTA
1 CCAGCTATGTGCG-GTGTGGGAGTGCACATGAGCTA
14162928 AGTTTGGCGG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
43 36 0.52
44 3 0.04
45 1 0.01
46 29 0.42
ACGTcount: A:0.23, C:0.16, G:0.36, T:0.25
Consensus pattern (45 bp):
CCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTATGATGATGAC
Found at i:14165711 original size:61 final size:61
Alignment explanation
Indices: 14165616--14165737 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
14165606 GCCAATGGAC
14165616 AAGGGAGAAAATTGGTGCATGAAGCATCAATGGATGGCATAGTGGCCAAATGAAATAAGAA
1 AAGGGAGAAAATTGGTGCATGAAGCATCAATGGATGGCATAGTGGCCAAATGAAATAAGAA
*
14165677 AAGGGAGGAAATTGGTGCATGAAGCATCAATGGATGGCATAGTGGCCAAATGAAATAAGAA
1 AAGGGAGAAAATTGGTGCATGAAGCATCAATGGATGGCATAGTGGCCAAATGAAATAAGAA
14165738 GAATAAGAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.18
Consensus pattern (61 bp):
AAGGGAGAAAATTGGTGCATGAAGCATCAATGGATGGCATAGTGGCCAAATGAAATAAGAA
Found at i:14180911 original size:19 final size:19
Alignment explanation
Indices: 14180887--14180924 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14180877 CTGCCAAACC
*
14180887 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
14180906 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
14180925 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:14182556 original size:19 final size:17
Alignment explanation
Indices: 14182529--14182569 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
14182519 ACTTATTTTA
*
14182529 TTAATA-AATATTATGTT
1 TTAATATAA-ATTATATT
14182546 TTAATATAAATTATATT
1 TTAATATAAATTATATT
14182563 TTAATAT
1 TTAATAT
14182570 TTTAAGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 20 0.91
18 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
TTAATATAAATTATATT
Found at i:14187003 original size:436 final size:433
Alignment explanation
Indices: 14186160--14187026 Score: 1161
Period size: 436 Copynumber: 2.0 Consensus size: 433
14186150 GAAATACTTC
**
14186160 TTTCAATTTCATAATGAATGGTAGAACAATTGAGCAAGATTCTCGCTATTATTTAGAACTTAAGG
1 TTTCAATGCCATAATGAATGGTAGAACAATTGAGCAAGATTCTCGCTATTATTTAGAACTTAAGG
* *
14186225 CAACAATTCAAAAGAAGTAATTCAATGTTTTGAATTGATGCATCAAGTTTCAAATAAAAGCAAGA
66 CAACAATTCAAAAGAAGTAATTCAATATTTTGAATTGATGCATCAAGTTCCAAATAAAAGCAAGA
* * * *
14186290 ATCTTGCTCAACATGTTCCACTATTGATTATGGAATTAAAAGAAGTAATTCGTTTAAAGCTTATT
131 ATCTTGCTCAACATGTTCCACCATTCATTACGGAATTAAAAGAAGTAATTCGTGTAAAGCTTATT
* * * * *
14186355 CTTGTTCTTTTTCTCTTATCCTAACTAATTTTTCCTTTAAACATCATATATATGGCTTGTATAAA
196 CTTATTCTTTTTCTCTTATCCTAACAAAATTTTCCTTTAAACATCATATATATAGCTTGCATAAA
* * * ** *
14186420 TGCATTGTTAATTTTAAAAATCTACTCACTAACATTTTCACATGCACGTTATTTGCATTAGCGAG
261 TGCATTCTTAATTTCAAAAATCTACTCACTAACATTTTCACATGCACATTATTTGCAAAAGCAAG
* **
14186485 AAGTGAAAGTGGTGAAATCAAAGTCAAAAGTGGAAAGAAGGGAGTCATTAAAACATGGTCTCTAC
326 AAGTAAAAGTGGTGAAATCAAAGGAAAAAGTGGAAAG-AGGGAGTCATTAAAACATGGTCTCTAC
*
14186550 CCCATTAACAGAACAAAGAATGCACTAATATCATATAACACTGA
390 CCCATTAACAGAACAAAGAATGCACTAATATCATACAACACTGA
* * * *
14186594 TTTCAATGCCATAATGAATGGTGGAACATGTTTGAGCAAGATTCTTGCTATTATTT-GAAACTTG
1 TTTCAATGCCATAATGAATGGTAGAACA--ATTGAGCAAGATTCTCGCTATTATTTAG-AACTTA
*
14186658 AGGCAACAATTCATAAA-AGGTAATTCAATATTTTGAATTGATGCATCAAGTTCCAAATAAAAGC
63 AGGCAACAATTCA-AAAGAAGTAATTCAATATTTTGAATTGATGCATCAAGTTCCAAATAAAAGC
* *
14186722 AAGAATCTTGCTCAACATGTTCCACCATTCATTACGGAATTGAAAGAAGTAATTTGTGTAAAGCT
127 AAGAATCTTGCTCAACATGTTCCACCATTCATTACGGAATTAAAAGAAGTAATTCGTGTAAAGCT
* * * * * *
14186787 TCTTTTTATTCTTTTTCTCTTATGCTAACAAAATTTTCTTTTCATCATCATATATATAGCTTGCA
192 TATTCTTATTCTTTTTCTCTTATCCTAACAAAATTTTCCTTTAAACATCATATATATAGCTTGCA
* * *
14186852 TGATTGCATTCTTAATTTCAACGAAA-CATACTCACTAACATTTTTACAT-CTACATTACTTT-C
257 TAAATGCATTCTTAATTTCAA--AAATC-TACTCACTAACATTTTCACATGC-ACATTA-TTTGC
* * * * *
14186914 AAAAGCAAGAGGTAAAAGTGGTGAAATTAAAGGAAAAATTGGAAAG-GGGATTCATTAAAACTTG
317 AAAAGCAAGAAGTAAAAGTGGTGAAATCAAAGGAAAAAGTGGAAAGAGGGAGTCATTAAAACATG
** * * *
14186978 GTCTCTACCTTATTAGCATAACAAAGAATGCACTAATATCCTACAACAC
382 GTCTCTACCCCATTAACAGAACAAAGAATGCACTAATATCATACAACAC
14187027 CCATATGCCA
Statistics
Matches: 375, Mismatches: 49, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
434 25 0.07
435 1 0.00
436 275 0.73
437 5 0.01
438 66 0.18
439 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (433 bp):
TTTCAATGCCATAATGAATGGTAGAACAATTGAGCAAGATTCTCGCTATTATTTAGAACTTAAGG
CAACAATTCAAAAGAAGTAATTCAATATTTTGAATTGATGCATCAAGTTCCAAATAAAAGCAAGA
ATCTTGCTCAACATGTTCCACCATTCATTACGGAATTAAAAGAAGTAATTCGTGTAAAGCTTATT
CTTATTCTTTTTCTCTTATCCTAACAAAATTTTCCTTTAAACATCATATATATAGCTTGCATAAA
TGCATTCTTAATTTCAAAAATCTACTCACTAACATTTTCACATGCACATTATTTGCAAAAGCAAG
AAGTAAAAGTGGTGAAATCAAAGGAAAAAGTGGAAAGAGGGAGTCATTAAAACATGGTCTCTACC
CCATTAACAGAACAAAGAATGCACTAATATCATACAACACTGA
Found at i:14187701 original size:30 final size:29
Alignment explanation
Indices: 14187665--14187724 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
14187655 ATTAAGCTAG
*
14187665 TGTACTTTTATTTTGAGCCAAATAAGTCCT
1 TGTACTTTTATTTTGAACCAAATAAG-CCT
*
14187695 TGTACTTTTATTTTGAATCAAATAAGCCT
1 TGTACTTTTATTTTGAACCAAATAAGCCT
14187724 T
1 T
14187725 TATATCTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (29 bp):
TGTACTTTTATTTTGAACCAAATAAGCCT
Found at i:14187835 original size:25 final size:26
Alignment explanation
Indices: 14187806--14187858 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14187796 CGTGACATGT
14187806 TGACATGTT-ATAATGG-ATGATGACG
1 TGACATGTTAAT-ATGGCATGATGACG
*
14187831 TGACATGTTAATGTGGCATGATGACG
1 TGACATGTTAATATGGCATGATGACG
14187857 TG
1 TG
14187859 GTCATATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.32
Consensus pattern (26 bp):
TGACATGTTAATATGGCATGATGACG
Found at i:14187857 original size:26 final size:25
Alignment explanation
Indices: 14187806--14187858 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
14187796 CGTGACATGT
14187806 TGACATGTTATAATGGATGATGACG
1 TGACATGTTATAATGGATGATGACG
*
14187831 TGACATGTTA-ATGTGGCATGATGACG
1 TGACATGTTATA-ATGG-ATGATGACG
14187857 TG
1 TG
14187859 GTCATATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 1 0.04
25 13 0.52
26 11 0.44
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.32
Consensus pattern (25 bp):
TGACATGTTATAATGGATGATGACG
Found at i:14196463 original size:2 final size:2
Alignment explanation
Indices: 14196456--14196482 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14196446 TAAAATCATG
14196456 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14196483 TATGAATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14199388 original size:36 final size:34
Alignment explanation
Indices: 14199316--14199409 Score: 111
Period size: 33 Copynumber: 2.7 Consensus size: 34
14199306 GTGCTGGTGG
* * *
14199316 TGTGCGGTGTGGGAGTGTACATGA-TATTTTCCA
1 TGTGCGGTGTGGGAGTGCACATGAGGATTATCCA
14199349 TGTGCGGTGTGGGAGTGCACATGAGGA-TATCAACTA
1 TGTGCGGTGTGGGAGTGCACATGAGGATTATC--C-A
*
14199385 TGTGCGGTGTGAGAGTGCACATGAG
1 TGTGCGGTGTGGGAGTGCACATGAG
14199410 TTGAGTTGAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
33 26 0.49
34 1 0.02
35 1 0.02
36 25 0.47
ACGTcount: A:0.21, C:0.13, G:0.37, T:0.29
Consensus pattern (34 bp):
TGTGCGGTGTGGGAGTGCACATGAGGATTATCCA
Found at i:14201211 original size:2 final size:2
Alignment explanation
Indices: 14201204--14201228 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14201194 CTAATCAGAT
14201204 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14201229 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14202005 original size:21 final size:21
Alignment explanation
Indices: 14201943--14202005 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 21
14201933 TGATCATCCT
14201943 TTATAATATAAAAT-TTAATA
1 TTATAATATAAAATCTTAATA
*
14201963 TTATAAAATTTAAAATCTTTAATA
1 TTAT--AATATAAAATC-TTAATA
14201987 -TATAATATAAAATACTTAA
1 TTATAATATAAAAT-CTTAA
14202006 AACAATTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
20 4 0.11
21 13 0.36
22 10 0.28
23 3 0.08
24 6 0.17
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (21 bp):
TTATAATATAAAATCTTAATA
Found at i:14218455 original size:2 final size:2
Alignment explanation
Indices: 14218450--14218488 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
14218440 ATATATATAT
* * *
14218450 AG AG AG AG AG AG AG AC AG AG AC AG AG AG AT AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14218489 ATCTTATTAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.05, G:0.41, T:0.03
Consensus pattern (2 bp):
AG
Found at i:14222282 original size:70 final size:69
Alignment explanation
Indices: 14222168--14222308 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 69
14222158 AAAAAAAAAG
* *
14222168 AGAAGGAAGACTAAATCAAATAGAGTTAAATAGTTCTTCATGTTTAATTTATGTGTGTGTTGCTT
1 AGAAGGAAGACTAAATCAAATAGAGTTAAATAGGTCTTCATGTTTAATTTATGTGTGTGATGCTT
14222233 AGTT
66 AGTT
14222237 ANGAAGGAAGACTAAATCAAATAGAGTTAAATAGGTCTTCATGTTTAATTTATGTGTGTGATGCT
1 A-GAAGGAAGACTAAATCAAATAGAGTTAAATAGGTCTTCATGTTTAATTTATGTGTGTGATGCT
14222302 TAGTT
65 TAGTT
14222307 AG
1 AG
14222309 GATTTTATTG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
69 2 0.03
70 67 0.97
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.37
Consensus pattern (69 bp):
AGAAGGAAGACTAAATCAAATAGAGTTAAATAGGTCTTCATGTTTAATTTATGTGTGTGATGCTT
AGTT
Found at i:14223408 original size:34 final size:32
Alignment explanation
Indices: 14223368--14223475 Score: 83
Period size: 34 Copynumber: 3.2 Consensus size: 32
14223358 TGATCCCGAT
14223368 AAAAACCATTGTTGCAGGTTGTGGTTGAGCCTTG
1 AAAAACCA-TGTTG-AGGTTGTGGTTGAGCCTTG
** * * * *
14223402 AAAAACCACCTTG-GGTTTTAGTTTAGCTCATG
1 AAAAACCATGTTGAGGTTGTGGTTGAGC-CTTG
* **
14223434 AAAAACTAGTGTAAAAGGTTGTGGTTGAGCCTTG
1 AAAAACCA-TGT-TGAGGTTGTGGTTGAGCCTTG
14223468 AAAAACCA
1 AAAAACCA
14223476 CTTTAGGTTT
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
31 11 0.20
32 10 0.19
33 4 0.07
34 18 0.33
35 11 0.20
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (32 bp):
AAAAACCATGTTGAGGTTGTGGTTGAGCCTTG
Found at i:14223492 original size:31 final size:31
Alignment explanation
Indices: 14223391--14223492 Score: 87
Period size: 31 Copynumber: 3.2 Consensus size: 31
14223381 GCAGGTTGTG
* *
14223391 GTTGAGCCTTGAAAAACCACCTTGGGTTTTA
1 GTTGAGCCTTGAAAAACCACTTTAGGTTTTA
* * * * * * *
14223422 GTTTAGCTCATGAAAAACTAGTGTAAAAGGTTGTG
1 GTTGAGC-CTTGAAAAACCACT-T--TAGGTTTTA
14223457 GTTGAGCCTTGAAAAACCACTTTAGGTTTTA
1 GTTGAGCCTTGAAAAACCACTTTAGGTTTTA
14223488 GTTGA
1 GTTGA
14223493 ACCCGTGAAA
Statistics
Matches: 51, Mismatches: 16, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
31 17 0.33
32 10 0.20
33 2 0.04
34 11 0.22
35 11 0.22
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (31 bp):
GTTGAGCCTTGAAAAACCACTTTAGGTTTTA
Found at i:14223502 original size:66 final size:65
Alignment explanation
Indices: 14223383--14223537 Score: 220
Period size: 66 Copynumber: 2.4 Consensus size: 65
14223373 CCATTGTTGC
* * * *
14223383 AGGTTGTGGTTGAGCCTTGAAAAACCACCTTGGGTTTTAGTTTAGCTCATGAAAAACTAGTGTAA
1 AGGTTGTGGTTGAGCCTTGAAAAACCACCTTAGGTTTTAGTTGAACCCATGAAAAACTAGTGT-A
14223448 A
65 A
* *
14223449 AGGTTGTGGTTGAGCCTTGAAAAACCACTTTAGGTTTTAGTTGAACCCGTGAAAAACTAGTGTAA
1 AGGTTGTGGTTGAGCCTTGAAAAACCACCTTAGGTTTTAGTTGAACCCATGAAAAACTAGTGTAA
* *
14223514 AGGTTTTGGCTGAGCCTGTGAAAA
1 AGGTTGTGGTTGAGCCT-TGAAAA
14223538 GCCATTGTAA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
65 17 0.21
66 63 0.79
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (65 bp):
AGGTTGTGGTTGAGCCTTGAAAAACCACCTTAGGTTTTAGTTGAACCCATGAAAAACTAGTGTAA
Found at i:14223535 original size:34 final size:34
Alignment explanation
Indices: 14223432--14223537 Score: 110
Period size: 34 Copynumber: 3.2 Consensus size: 34
14223422 GTTTAGCTCA
*
14223432 TGAAAAACTAGTGTAAAAGGTTGTGGTTGAGCCT-
1 TGAAAAACTAGTGT-AAAGGTTTTGGTTGAGCCTG
* * * * * *
14223466 TGAAAAACCACT-T-TAGGTTTTAGTTGAACCCG
1 TGAAAAACTAGTGTAAAGGTTTTGGTTGAGCCTG
*
14223498 TGAAAAACTAGTGTAAAGGTTTTGGCTGAGCCTG
1 TGAAAAACTAGTGTAAAGGTTTTGGTTGAGCCTG
14223532 TGAAAA
1 TGAAAA
14223538 GCCATTGTAA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
31 13 0.24
32 10 0.18
33 2 0.04
34 30 0.55
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (34 bp):
TGAAAAACTAGTGTAAAGGTTTTGGTTGAGCCTG
Found at i:14224639 original size:25 final size:25
Alignment explanation
Indices: 14224592--14224639 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
14224582 GTTGGGTTCA
* *
14224592 TTTTCTTTAAGTTAATTTTTTATAC
1 TTTTCTTTAAGTTAAGTTATTATAC
14224617 TTTTCTTTAAGTCT-AGTTATTAT
1 TTTTCTTTAAGT-TAAGTTATTAT
14224640 TTAATTTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.23, C:0.08, G:0.06, T:0.62
Consensus pattern (25 bp):
TTTTCTTTAAGTTAAGTTATTATAC
Found at i:14243441 original size:26 final size:26
Alignment explanation
Indices: 14243411--14243477 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
14243401 ATTCTAGGGG
*
14243411 CAAAATGGTAATTTTATCCTCGAGGA
1 CAAAATGGTAATTTTATCATCGAGGA
* *
14243437 CAAAATGGTAATTTTGTCATTGAGGA
1 CAAAATGGTAATTTTATCATCGAGGA
*
14243463 AAAAATGAG-AATTTT
1 CAAAATG-GTAATTTT
14243478 TAGAAAAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 35 0.97
27 1 0.03
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (26 bp):
CAAAATGGTAATTTTATCATCGAGGA
Found at i:14244814 original size:42 final size:42
Alignment explanation
Indices: 14244754--14244872 Score: 204
Period size: 42 Copynumber: 2.8 Consensus size: 42
14244744 TGTGGACCCG
14244754 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCT-
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTA
14244795 GACTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTA
1 G-CTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTA
* *
14244838 GCTATATGCGAATGGGAGTGCACATAAGCCGTTGC
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
14244873 ATATGAGATG
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
41 1 0.01
42 72 0.97
43 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (42 bp):
GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCTA
Found at i:14250036 original size:15 final size:15
Alignment explanation
Indices: 14250016--14250044 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14250006 ATCTTCCCAA
14250016 TAATCACATTCTCAG
1 TAATCACATTCTCAG
14250031 TAATCACATTCTCA
1 TAATCACATTCTCA
14250045 ACAAAATACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (15 bp):
TAATCACATTCTCAG
Found at i:14251985 original size:33 final size:32
Alignment explanation
Indices: 14251927--14252011 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 32
14251917 AAAAAAAATT
* *
14251927 AAAATAAAATATATAATATAAAAAATTAT-ATGA
1 AAAATAAAATA-A-AATATATAAAATTATAATCA
14251960 AGAAATGAAAATAAAATATATAAAATTATAATCA
1 A-AAAT-AAAATAAAATATATAAAATTATAATCA
14251994 AAAATAAAA-AAAATATAT
1 AAAATAAAATAAAATATAT
14252012 GACATTAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
31 9 0.19
32 4 0.09
33 19 0.40
34 9 0.19
35 6 0.13
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (32 bp):
AAAATAAAATAAAATATATAAAATTATAATCA
Found at i:14252246 original size:15 final size:15
Alignment explanation
Indices: 14252226--14252254 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14252216 ATTATTTTTC
14252226 TTACAATCACATTAT
1 TTACAATCACATTAT
14252241 TTACAATCACATTA
1 TTACAATCACATTA
14252255 CTTATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (15 bp):
TTACAATCACATTAT
Found at i:14253271 original size:4 final size:4
Alignment explanation
Indices: 14253264--14253288 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14253254 TCCTTTCTTT
14253264 TTTG TTTG TTTG TTTG TTTG TTTG T
1 TTTG TTTG TTTG TTTG TTTG TTTG T
14253289 GCCTGGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76
Consensus pattern (4 bp):
TTTG
Found at i:14260452 original size:49 final size:50
Alignment explanation
Indices: 14260387--14260484 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 50
14260377 TACATATTGT
*
14260387 CTTAATTAAGATAAGAGTTGTCTCAATTTAGACAAG-GTACATATGTTGC
1 CTTAATTAAGACAAGAGTTGTCTCAATTTAGACAAGAGTACATATGTTGC
* * *
14260436 CTTAATTAAGACAAGAGTTGTTTTAATTTAGACAAGAGTATATATGTTG
1 CTTAATTAAGACAAGAGTTGTCTCAATTTAGACAAGAGTACATATGTTG
14260485 ATTTAAAACA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 33 0.75
50 11 0.25
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (50 bp):
CTTAATTAAGACAAGAGTTGTCTCAATTTAGACAAGAGTACATATGTTGC
Found at i:14262189 original size:36 final size:36
Alignment explanation
Indices: 14262119--14262250 Score: 110
Period size: 36 Copynumber: 3.7 Consensus size: 36
14262109 CTCCACACAA
* *
14262119 GTCATGTGCACTCCCACACCACACATAG-CTATTATT
1 GTCATGTGCACTCCCACACCGCACACAGTC-ATTATT
*
14262155 GTCATGTGCACTCCCACACCGCACACGGTCATTATT
1 GTCATGTGCACTCCCACACCGCACACAGTCATTATT
* * * * * **
14262191 -TCATGAGCTCACCCACACAGTACACCA-TCATTACC
1 GTCATGTGCACTCCCACACCGCACA-CAGTCATTATT
*
14262226 ATCATGTGC-CTTCCCACACCGCACA
1 GTCATGTGCAC-TCCCACACCGCACA
14262251 TACACGGTTA
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
35 26 0.34
36 50 0.65
37 1 0.01
ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23
Consensus pattern (36 bp):
GTCATGTGCACTCCCACACCGCACACAGTCATTATT
Found at i:14280061 original size:8 final size:8
Alignment explanation
Indices: 14280027--14280066 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
14280017 TTTGTCAAAA
14280027 ATATTTAT
1 ATATTTAT
*
14280035 ATATATAT
1 ATATTTAT
*
14280043 ATATATAT
1 ATATTTAT
*
14280051 ATATTTCT
1 ATATTTAT
14280059 ATATTTAT
1 ATATTTAT
14280067 TAATTCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (8 bp):
ATATTTAT
Found at i:14280649 original size:2 final size:2
Alignment explanation
Indices: 14280642--14280710 Score: 102
Period size: 2 Copynumber: 34.0 Consensus size: 2
14280632 GGCAACCAAG
* * *
14280642 TA TA TA TA CA TA CA TA TA TA TA TA TA TA TA CNA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
14280685 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14280711 CCATCCCAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
2 59 0.98
3 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:14281219 original size:8 final size:8
Alignment explanation
Indices: 14281206--14281273 Score: 64
Period size: 8 Copynumber: 8.5 Consensus size: 8
14281196 TACTCTATAG
14281206 TATATGTA
1 TATATGTA
*
14281214 TATATGTG
1 TATATGTA
*
14281222 TATAAGTA
1 TATATGTA
*
14281230 TTTATGTA
1 TATATGTA
*
14281238 TATATATA
1 TATATGTA
*
14281246 TATATATA
1 TATATGTA
*
14281254 TGTATGTA
1 TATATGTA
* *
14281262 CATATATA
1 TATATGTA
14281270 TATA
1 TATA
14281274 CTTTCAAATA
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 47 1.00
ACGTcount: A:0.40, C:0.01, G:0.10, T:0.49
Consensus pattern (8 bp):
TATATGTA
Found at i:14281249 original size:24 final size:24
Alignment explanation
Indices: 14281208--14281273 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
14281198 CTCTATAGTA
* * *
14281208 TATGTATATATGTGTATA-AGTATT
1 TATGTATATATATATATATA-TATG
14281232 TATGTATATATATATATATATATG
1 TATGTATATATATATATATATATG
*
14281256 TATGTACATATATATATA
1 TATGTATATATATATATA
14281274 CTTTCAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 36 0.97
25 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (24 bp):
TATGTATATATATATATATATATG
Found at i:14281421 original size:36 final size:36
Alignment explanation
Indices: 14281397--14281493 Score: 167
Period size: 36 Copynumber: 2.7 Consensus size: 36
14281387 GTTGTTATGT
14281397 TCATGTGCACTCCCACACCGCACATCACCATTACCG
1 TCATGTGCACTCCCACACCGCACATCACCATTACCG
*
14281433 TCATGTGCACTCCCACACCGCACACCACCATTACCG
1 TCATGTGCACTCCCACACCGCACATCACCATTACCG
* *
14281469 TCGTGTGCACTCCCACACCACACAT
1 TCATGTGCACTCCCACACCGCACAT
14281494 ACATAGTTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.25, C:0.45, G:0.11, T:0.19
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACATCACCATTACCG
Found at i:14282478 original size:28 final size:27
Alignment explanation
Indices: 14282426--14282478 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
14282416 GTTTAGTGAA
* *
14282426 CAAGAAAGAAATAGAAGAATGAAGAAC
1 CAAGAAAGAAATAAAAGAATAAAGAAC
14282453 CAAGAAAAGAAATGAAAAGAA-AAAGA
1 CAAG-AAAGAAAT-AAAAGAATAAAGA
14282479 GAAAAAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 4 0.18
28 12 0.55
29 6 0.27
ACGTcount: A:0.68, C:0.06, G:0.21, T:0.06
Consensus pattern (27 bp):
CAAGAAAGAAATAAAAGAATAAAGAAC
Found at i:14287972 original size:79 final size:79
Alignment explanation
Indices: 14287841--14287997 Score: 269
Period size: 79 Copynumber: 2.0 Consensus size: 79
14287831 TAATACCTAG
*
14287841 AAGGCAAAATACATTCCAAAAGCATTCTGCCACAAAGGTATCGATACCCTTCCCTTAAGTATCGA
1 AAGGCAAAATACACTCCAAAAGCATTCTGCCACAAAGGTATCGATACCCTTCCCTTAAGTATCGA
14287906 TACCTAGAAGGCAA
66 TACCTAGAAGGCAA
* * * *
14287920 AAGGCAGAATGCACTCCAGAAGCATTCTGCCACAAAGGTATCGATACCCTTCCCTTAGGTATCGA
1 AAGGCAAAATACACTCCAAAAGCATTCTGCCACAAAGGTATCGATACCCTTCCCTTAAGTATCGA
14287985 TACCTAGAAGGCA
66 TACCTAGAAGGCA
14287998 GAATGCATTC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (79 bp):
AAGGCAAAATACACTCCAAAAGCATTCTGCCACAAAGGTATCGATACCCTTCCCTTAAGTATCGA
TACCTAGAAGGCAA
Found at i:14288037 original size:72 final size:72
Alignment explanation
Indices: 14287920--14288059 Score: 183
Period size: 72 Copynumber: 1.9 Consensus size: 72
14287910 TAGAAGGCAA
* * *
14287920 AAGGCAGAATGCACTCCAGAAGCATTCTGCCACAAAGGTATCGATACCCTTCC-CTTAGGTATCG
1 AAGGCAGAATGCACTCCAAAAACATTCTGCCACAAAGGTATCGATA-CCTTCCTCTTAAGTATCG
14287984 ATACCTAG
65 ATACCTAG
* * ** * *
14287992 AAGGCAGAATGCATTCCAAAAACATTTTTTCACTAAGGTATCGATACCTTCCTTTTAAGTATCGA
1 AAGGCAGAATGCACTCCAAAAACATTCTGCCACAAAGGTATCGATACCTTCCTCTTAAGTATCGA
14288057 TAC
66 TAC
14288060 TAGCTATTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 6 0.10
72 52 0.90
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (72 bp):
AAGGCAGAATGCACTCCAAAAACATTCTGCCACAAAGGTATCGATACCTTCCTCTTAAGTATCGA
TACCTAG
Found at i:14288782 original size:2 final size:2
Alignment explanation
Indices: 14288775--14288807 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14288765 TTGTATTAGA
14288775 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14288808 CACACACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14289766 original size:2 final size:2
Alignment explanation
Indices: 14289759--14289809 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
14289749 TGTGGCATGT
14289759 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
14289801 TT TA TA TA T
1 TA TA TA TA T
14289810 GTTCAGCACA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14289965 original size:220 final size:221
Alignment explanation
Indices: 14289583--14289982 Score: 649
Period size: 220 Copynumber: 1.8 Consensus size: 221
14289573 TTTATATGTA
**
14289583 TATATATATTAAGCACACAACATGTGCATTGAAACATCAAGGTTAGGCGTGCTTATTTGATAATT
1 TATATATATTAAGCACACAACATGTGCATTGAAACATCAAGGTTAGGCACGCTTATTTGATAATT
14289648 AGAATATTATGAGAATATTTACCTATGGTATGACTTATATGTTCATATATGTGGTTACATACATA
66 AGAATATTATGAGAATATTTACCTATGGTATGACTTATATGTTCATATATGTGGTTACATACATA
**
14289713 TGAAAATGTTGAATGATTTTCCATATTAAAACAATATGTGGCATG-TTATATATATATATATATA
131 CCAAAATGTTGAATGATTTTCCATATTAAAACAATATGTGGCATGCTTATATATATATATATATA
14289777 TATATATATATATATATATATATATT
196 TATATATATATATATATATATATATT
* * * * * * *
14289803 TATATATGTTCAGCACACGAGATGTGCATTGATACATCAAGGTTAGGCACGTTTATTTGATAGTT
1 TATATATATTAAGCACACAACATGTGCATTGAAACATCAAGGTTAGGCACGCTTATTTGATAATT
* * *
14289868 GGAATATTATGAGAATATTTACCTATGGTATGACTTCTATGTTTATATATGTGGTTACATACATA
66 AGAATATTATGAGAATATTTACCTATGGTATGACTTATATGTTCATATATGTGGTTACATACATA
* *
14289933 CCAAAATGTTGAATGGTTTTCCATATTAAAACAATATGTGGTATGCTTAT
131 CCAAAATGTTGAATGATTTTCCATATTAAAACAATATGTGGCATGCTTAT
14289983 GTCAGTTTGT
Statistics
Matches: 163, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
220 159 0.98
221 4 0.02
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39
Consensus pattern (221 bp):
TATATATATTAAGCACACAACATGTGCATTGAAACATCAAGGTTAGGCACGCTTATTTGATAATT
AGAATATTATGAGAATATTTACCTATGGTATGACTTATATGTTCATATATGTGGTTACATACATA
CCAAAATGTTGAATGATTTTCCATATTAAAACAATATGTGGCATGCTTATATATATATATATATA
TATATATATATATATATATATATATT
Found at i:14296877 original size:20 final size:20
Alignment explanation
Indices: 14296832--14296869 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14296822 TTTTGGCCCC
14296832 ATTTGACTTATTGGAGTAGA
1 ATTTGACTTATTGGAGTAGA
14296852 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
14296870 TGATTTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.42
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTAGA
Found at i:14296953 original size:28 final size:27
Alignment explanation
Indices: 14296920--14296973 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
14296910 ATTTGGAGTA
*
14296920 CAGGGGTAAAATGGTAATTTTGCCACCT
1 CAGGGGCAAAATGGTAATTTT-CCACCT
*
14296948 CAGGGGCAAAATTGTAATTTTCCACC
1 CAGGGGCAAAATGGTAATTTTCCACC
14296974 ACTAGGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (27 bp):
CAGGGGCAAAATGGTAATTTTCCACCT
Found at i:14308533 original size:21 final size:21
Alignment explanation
Indices: 14308491--14308533 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14308481 CTTGTACCGA
*
14308491 TGGTGGAACTAAAGGAGTAAC
1 TGGTGGAACTAAAGGAGGAAC
* * *
14308512 TGGTGGTACTATAGGTGGAAC
1 TGGTGGAACTAAAGGAGGAAC
14308533 T
1 T
14308534 TGACCAGTCG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (21 bp):
TGGTGGAACTAAAGGAGGAAC
Found at i:14308952 original size:22 final size:22
Alignment explanation
Indices: 14308924--14308986 Score: 117
Period size: 22 Copynumber: 2.9 Consensus size: 22
14308914 TTTAAAACCA
*
14308924 CTTTAAAACCAAAAACTCTTAT
1 CTTTAAAACCAAAAGCTCTTAT
14308946 CTTTAAAACCAAAAGCTCTTAT
1 CTTTAAAACCAAAAGCTCTTAT
14308968 CTTTAAAACCAAAAGCTCT
1 CTTTAAAACCAAAAGCTCT
14308987 GATACCAATN
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.43, C:0.24, G:0.03, T:0.30
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTTAT
Found at i:14312425 original size:19 final size:19
Alignment explanation
Indices: 14312398--14312435 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14312388 ACATTTGACT
14312398 TATTAGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
*
14312417 TATTGGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
14312436 GTTAAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTAGAGTATGATTTGAG
Found at i:14315688 original size:36 final size:36
Alignment explanation
Indices: 14315633--14315703 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
14315623 AAGAAAAGAC
* *
14315633 TGCCTCTGTAATGGCCCAGACAAGAAGAATCCAATA
1 TGCCTCTGCAATGACCCAGACAAGAAGAATCCAATA
* *
14315669 TGCCTCTGCAATGATCCAGACAAGAGGAATCCAAT
1 TGCCTCTGCAATGACCCAGACAAGAAGAATCCAAT
14315704 CAGTCTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (36 bp):
TGCCTCTGCAATGACCCAGACAAGAAGAATCCAATA
Found at i:14319797 original size:21 final size:21
Alignment explanation
Indices: 14319773--14319813 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14319763 ATAGAGAAAA
*
14319773 ATATCATAT-AATCATGTTATC
1 ATATCAAATCAAT-ATGTTATC
14319794 ATATCAAATCAATATGTTAT
1 ATATCAAATCAATATGTTAT
14319814 GTCATCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (21 bp):
ATATCAAATCAATATGTTATC
Found at i:14319837 original size:25 final size:24
Alignment explanation
Indices: 14319804--14319853 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
14319794 ATATCAAATC
14319804 AATATGTT-ATGTCATCATCAATTAT
1 AATATGTTAATGTCA-CATC-ATTAT
14319829 AATATGTTACATGTCACATCATTAT
1 AATATGTTA-ATGTCACATCATTAT
14319854 CAGTTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 13 0.57
26 4 0.17
27 6 0.26
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (24 bp):
AATATGTTAATGTCACATCATTAT
Found at i:14319972 original size:17 final size:16
Alignment explanation
Indices: 14319945--14319983 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
14319935 TAATAAATAT
* *
14319945 TTATTTGAATATTTTA
1 TTATTTAAATATATTA
14319961 TATATTTAAATATATTA
1 T-TATTTAAATATATTA
14319978 TTATTT
1 TTATTT
14319984 TATTAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTATTTAAATATATTA
Found at i:14327828 original size:44 final size:44
Alignment explanation
Indices: 14327765--14327855 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
14327755 ATGTATTTCT
14327765 GTGGCACAGCAGCTAGAGTTAAGGTTCATAGTCTCCTGAAACTA
1 GTGGCACAGCAGCTAGAGTTAAGGTTCATAGTCTCCTGAAACTA
14327809 GTGGCACAGCAGCTAGAGTTAAGGTTCATAGTCTCCTGAAACTA
1 GTGGCACAGCAGCTAGAGTTAAGGTTCATAGTCTCCTGAAACTA
14327853 GTG
1 GTG
14327856 CATGAAAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (44 bp):
GTGGCACAGCAGCTAGAGTTAAGGTTCATAGTCTCCTGAAACTA
Found at i:14330708 original size:17 final size:18
Alignment explanation
Indices: 14330688--14330725 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
14330678 AAAATGATAT
*
14330688 AATATTACAATATTAA-A
1 AATACTACAATATTAAGA
*
14330705 AATACTATAATATTAAGA
1 AATACTACAATATTAAGA
14330723 AAT
1 AAT
14330726 TAAAATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (18 bp):
AATACTACAATATTAAGA
Found at i:14330727 original size:25 final size:25
Alignment explanation
Indices: 14330671--14330730 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
14330661 TTCTCTAAAT
*
14330671 AAAATTTAAAATGATATAATATTAC
1 AAAATTAAAAATGATATAATATTAC
*
14330696 AATATTAAAAAT-ACTATAATATTA-
1 AAAATTAAAAATGA-TATAATATTAC
14330720 AGAAATTAAAA
1 A-AAATTAAAA
14330731 TATAATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 2 0.07
25 28 0.93
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (25 bp):
AAAATTAAAAATGATATAATATTAC
Found at i:14334319 original size:18 final size:18
Alignment explanation
Indices: 14334292--14334340 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
14334282 TTATTTAAAA
14334292 AATTATGTTTGTTCAAGC
1 AATTATGTTTGTTCAAGC
* * *
14334310 AATTAAGTTTGCTCAATC
1 AATTATGTTTGTTCAAGC
14334328 AATTATGTTTGTT
1 AATTATGTTTGTT
14334341 TAAAAGATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (18 bp):
AATTATGTTTGTTCAAGC
Found at i:14334350 original size:18 final size:19
Alignment explanation
Indices: 14334329--14334367 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
14334319 TGCTCAATCA
*
14334329 ATTATGTTTGT-TTAAAAG
1 ATTATGTCTGTATTAAAAG
*
14334347 ATTATGTCTGTATTAAGAG
1 ATTATGTCTGTATTAAAAG
14334366 AT
1 AT
14334368 GTATTTGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (19 bp):
ATTATGTCTGTATTAAAAG
Found at i:14337588 original size:15 final size:14
Alignment explanation
Indices: 14337568--14337597 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14337558 GATCTGCGCC
14337568 TGATGAATCCAAGTT
1 TGATGAATCC-AGTT
14337583 TGATGAATCCAGTT
1 TGATGAATCCAGTT
14337597 T
1 T
14337598 CTCTTGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (14 bp):
TGATGAATCCAGTT
Found at i:14346994 original size:2 final size:2
Alignment explanation
Indices: 14346952--14346981 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14346942 ATTCAAACTG
14346952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14346982 ACACAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14356845 original size:30 final size:30
Alignment explanation
Indices: 14356782--14356850 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
14356772 ATTATAATGG
*
14356782 TTTATTTGACTCAAAATAAAAGTAAAATAA
1 TTTATTTGACTCAAAATAAAAGTAAAAGAA
*
14356812 TTTATTTGACTCAAAATAAAAG-AATAAGGA
1 TTTATTTGACTCAAAATAAAAGTAA-AAGAA
*
14356842 TTTAATTGA
1 TTTATTTGA
14356851 ATGCAATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
29 2 0.06
30 33 0.94
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (30 bp):
TTTATTTGACTCAAAATAAAAGTAAAAGAA
Found at i:14357391 original size:2 final size:2
Alignment explanation
Indices: 14357384--14357477 Score: 102
Period size: 2 Copynumber: 46.5 Consensus size: 2
14357374 CCAAATAATT
14357384 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
14357426 TA TA TA TGA GA TG T- TA TG T- TN TGA TA TA TA TA TA TA TC TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
14357468 TA CTA TA TA T
1 TA -TA TA TA T
14357478 GAGTGGATCA
Statistics
Matches: 80, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
1 2 0.03
2 74 0.93
3 4 0.05
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:14359435 original size:16 final size:16
Alignment explanation
Indices: 14359414--14359445 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14359404 ACAGAGGGAT
14359414 AAGGGTAATTGTATAA
1 AAGGGTAATTGTATAA
14359430 AAGGGTAATTGTATAA
1 AAGGGTAATTGTATAA
14359446 GGGGTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (16 bp):
AAGGGTAATTGTATAA
Found at i:14359447 original size:14 final size:14
Alignment explanation
Indices: 14359412--14359448 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
14359402 AGACAGAGGG
14359412 ATAAGGGTAATTGT
1 ATAAGGGTAATTGT
14359426 ATAAAAGGGTAATTGT
1 AT--AAGGGTAATTGT
14359442 ATAAGGG
1 ATAAGGG
14359449 GTTTATAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
16 14 0.67
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (14 bp):
ATAAGGGTAATTGT
Found at i:14368052 original size:14 final size:14
Alignment explanation
Indices: 14368030--14368068 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14368020 TTTCCTAGAG
*
14368030 TTTTCTTTAACTTT
1 TTTTCTTTAAATTT
*
14368044 TTTTTTTTAAATTT
1 TTTTCTTTAAATTT
*
14368058 TGTTCTTTAAA
1 TTTTCTTTAAA
14368069 AGAAACTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (14 bp):
TTTTCTTTAAATTT
Found at i:14372431 original size:59 final size:59
Alignment explanation
Indices: 14372352--14372872 Score: 740
Period size: 59 Copynumber: 8.8 Consensus size: 59
14372342 ACAAATATTT
* * * *
14372352 CTAGACTTGATCTAGACTCGACCTATCTCAAAACAGGTTCGACTTAAAAATTGAAATTC
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
* * *
14372411 CTA-AGCTTGATCTAGGCTCGACCTATCTCACAACAGGTTCAACTTAAAAATTGAAATTC
1 CTAGA-CTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
* * * * * *
14372470 ATAGACTTTATCTAGGCTTGAACTATCTTGA-AACAGGTTCGATTTAAAAAATGAAATTC
1 CTAGACTTAATCTAGGCTCGACCTATC-TCACAACAGGTTCGATTTAAAAATTGAAATTC
*
14372529 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTTGATTTAAAAATTGAAATTC
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
*
14372588 CTAGACTTTATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
* * *
14372647 CTAGACTTTATCTAGGTTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTT
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
* * *
14372706 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAAGTTCGATTTAAAAAATTAAAATTT
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT-AAAAATTGAAATTC
* **
14372766 CTAGACTTAATCTAGGCTCAACCTATCTCACAACAGGTTCGATTTAAACAAACGAAATTC
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAA-AATTGAAATTC
* * * *
14372826 CTAGACTTAATCTAGGCTCTACCTATCTTAAAACAGGATCGATTTAA
1 CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAA
14372873 TTCTTTAATG
Statistics
Matches: 420, Mismatches: 36, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
58 3 0.01
59 308 0.73
60 109 0.26
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (59 bp):
CTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTGAAATTC
Found at i:14383446 original size:13 final size:13
Alignment explanation
Indices: 14383428--14383452 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14383418 ATTAACTTGC
14383428 ATAAAAAAAATAA
1 ATAAAAAAAATAA
14383441 ATAAAAAAAATA
1 ATAAAAAAAATA
14383453 GTAACCAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
ATAAAAAAAATAA
Found at i:14386867 original size:24 final size:24
Alignment explanation
Indices: 14386834--14386883 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
14386824 GTGTGGTCCA
*
14386834 TTATCCTTTGGCCCTTCGTTTCTT
1 TTATCATTTGGCCCTTCGTTTCTT
* *
14386858 TTATCATTTGTCCCTTTGTTTCTT
1 TTATCATTTGGCCCTTCGTTTCTT
14386882 TT
1 TT
14386884 GTCAATTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.06, C:0.24, G:0.10, T:0.60
Consensus pattern (24 bp):
TTATCATTTGGCCCTTCGTTTCTT
Found at i:14387530 original size:29 final size:28
Alignment explanation
Indices: 14387498--14387567 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
14387488 TCATTAATTC
14387498 TAAAAATTTATTTAATTTAAAATAAAAAAT
1 TAAAAATTTATTTAA--TAAAATAAAAAAT
* *
14387528 AAAAAATTTAATTTAATATAATAAAAAAT
1 TAAAAATTT-ATTTAATAAAATAAAAAAT
14387557 TAAAAATTTAT
1 TAAAAATTTAT
14387568 ATAAAAGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 2 0.06
29 20 0.56
30 8 0.22
31 6 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
TAAAAATTTATTTAATAAAATAAAAAAT
Found at i:14389573 original size:4 final size:4
Alignment explanation
Indices: 14389564--14389593 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
14389554 CAGATTTCTT
14389564 CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CA
14389594 GTGCATATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:14396831 original size:29 final size:28
Alignment explanation
Indices: 14396793--14396848 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
14396783 AGTGGTAACC
* *
14396793 CATGGTTTTAACAAGTTCACCATAAACT
1 CATGGTTTTAACAAGCTCACCACAAACT
*
14396821 CATGGTGTTTAACAGGCTCACCACAAAC
1 CATGGT-TTTAACAAGCTCACCACAAAC
14396849 CCATACACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (28 bp):
CATGGTTTTAACAAGCTCACCACAAACT
Found at i:14398464 original size:2 final size:2
Alignment explanation
Indices: 14398457--14398494 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
14398447 GTAAGTATGT
14398457 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14398495 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:14400279 original size:30 final size:29
Alignment explanation
Indices: 14400245--14400310 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
14400235 AAAGAATAAG
*
14400245 AAGTTGAGGGGTGAAATTGTAAATAATGAA
1 AAGTTGAGGGGTGAAATTG-AAATAATCAA
* * *
14400275 AAGTTAAGGGGTGAAGTTGAAATTATCAA
1 AAGTTGAGGGGTGAAATTGAAATAATCAA
14400304 AAGTTGA
1 AAGTTGA
14400311 AGGTTCAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.42, C:0.02, G:0.29, T:0.27
Consensus pattern (29 bp):
AAGTTGAGGGGTGAAATTGAAATAATCAA
Found at i:14400382 original size:31 final size:31
Alignment explanation
Indices: 14400329--14400388 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
14400319 TTTGCAATTT
* * *
14400329 ATGAAAGGTTTGAAGGACCAAATTATAAAGG
1 ATGAAAAGTTTAAAGGACCAAATGATAAAGG
**
14400360 ATGAAAAGTTTAAAGGGTCAAATGATAAA
1 ATGAAAAGTTTAAAGGACCAAATGATAAA
14400389 TAAGAAAAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.48, C:0.05, G:0.23, T:0.23
Consensus pattern (31 bp):
ATGAAAAGTTTAAAGGACCAAATGATAAAGG
Found at i:14402637 original size:25 final size:24
Alignment explanation
Indices: 14402603--14402663 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
14402593 TCTGTGATGT
* *
14402603 ATATACGTGGTAAGCCCATAGGTTG
1 ATATACGTGGT-AGACCATAAGTTG
* *
14402628 ATATATGTGGCTAGACCTTAAGTTG
1 ATATACGTGG-TAGACCATAAGTTG
14402653 ATATACGTGGT
1 ATATACGTGGT
14402664 TGCGACCATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (24 bp):
ATATACGTGGTAGACCATAAGTTG
Found at i:14407325 original size:15 final size:15
Alignment explanation
Indices: 14407299--14407345 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
14407289 GCGGATTTCT
14407299 TAAAACAACTTTAAAA
1 TAAAA-AACTTTAAAA
*
14407315 TAAAAAACTTTTAAA
1 TAAAAAACTTTAAAA
**
14407330 TCCAAAACTTTAAAA
1 TAAAAAACTTTAAAA
14407345 T
1 T
14407346 CCAAATCTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 22 0.81
16 5 0.19
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAAAACTTTAAAA
Found at i:14407346 original size:15 final size:15
Alignment explanation
Indices: 14407305--14407350 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
14407295 TTCTTAAAAC
**
14407305 AACTTTAAAATAAAA
1 AACTTTAAAATCCAA
*
14407320 AACTTTTAAATCCAA
1 AACTTTAAAATCCAA
14407335 AACTTTAAAATCCAA
1 AACTTTAAAATCCAA
14407350 A
1 A
14407351 TCTCTGATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (15 bp):
AACTTTAAAATCCAA
Found at i:14415172 original size:69 final size:68
Alignment explanation
Indices: 14415068--14415223 Score: 168
Period size: 69 Copynumber: 2.3 Consensus size: 68
14415058 TCTCGATGTG
* * * * * ****
14415068 GGGGTAAGAATACTATAGGGTTAAATTTGGCATCATATCACTTTTTTCCTCATTATAAATCTTGG
1 GGGGTAAGAATACCACAGGATTAAATTGGGCATCATATCACTTTTTCCCTC-TTATAAATCCCAA
14415133 TCTA
65 TCTA
* * * *
14415137 GGGGTAAGAATACCACAGGATTAAGTTGGGTATCATATGACTTTTTCCCTCTTATGAATCCCAAT
1 GGGGTAAGAATACCACAGGATTAAATTGGGCATCATATCACTTTTTCCCTCTTATAAATCCCAAT
* *
14415202 GTT
66 CTA
14415205 GGGGTAAGAATACCACAGG
1 GGGGTAAGAATACCACAGG
14415224 GATGACTTGG
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
68 29 0.40
69 43 0.60
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33
Consensus pattern (68 bp):
GGGGTAAGAATACCACAGGATTAAATTGGGCATCATATCACTTTTTCCCTCTTATAAATCCCAAT
CTA
Found at i:14416547 original size:19 final size:20
Alignment explanation
Indices: 14416507--14416549 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
14416497 ACCCCAACTC
14416507 TTTAGCTCTAACAACTCATT
1 TTTAGCTCTAACAACTCATT
14416527 TTTAGCTC-AA-AACTCCATT
1 TTTAGCTCTAACAACT-CATT
14416546 TTTA
1 TTTA
14416550 TGATTCTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.18
19 10 0.45
20 8 0.36
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (20 bp):
TTTAGCTCTAACAACTCATT
Found at i:14417580 original size:80 final size:80
Alignment explanation
Indices: 14417414--14417582 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 80
14417404 ACATTGTGGC
* * *
14417414 CTAAGCATGTAAGTAATTTATAAGGTTATGAAATGTATGACATGAGATCTATATGTTGAGATAGT
1 CTAAGTATGTAAGTAATTTATAAGGTTATGAAATATATGACATGAGATCTATATGTTGAGATAGC
*
14417479 AATATACATTATAGG
66 AATATACATTACAGG
* * * * * *
14417494 CCAAGTATGTAAGTGATTTATGAGGTTATGAAATATATGCCATGAGATGTATGTGTTGAGATAGC
1 CTAAGTATGTAAGTAATTTATAAGGTTATGAAATATATGACATGAGATCTATATGTTGAGATAGC
* *
14417559 CATATACATTACGGG
66 AATATACATTACAGG
14417574 CTAAGTATG
1 CTAAGTATG
14417583 ATGATGATTC
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (80 bp):
CTAAGTATGTAAGTAATTTATAAGGTTATGAAATATATGACATGAGATCTATATGTTGAGATAGC
AATATACATTACAGG
Found at i:14421445 original size:20 final size:20
Alignment explanation
Indices: 14421420--14421457 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14421410 TTTCCTCTTT
14421420 AATGTATCGACACATTTGGC
1 AATGTATCGACACATTTGGC
*
14421440 AATGTATCGATACATTTG
1 AATGTATCGACACATTTG
14421458 TCCTATTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
AATGTATCGACACATTTGGC
Found at i:14422375 original size:21 final size:21
Alignment explanation
Indices: 14422322--14422386 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
14422312 AAATTGCTTC
*
14422322 AATGATCTTTGAACTTTTTTG
1 AATGATCTTTGAACTTGTTTG
* * *
14422343 AGTAATCCTTGAACTTGTTTG
1 AATGATCTTTGAACTTGTTTG
* * *
14422364 AATGATTTTTGAAGTTGCTTG
1 AATGATCTTTGAACTTGTTTG
14422385 AA
1 AA
14422387 AATGTTTTTG
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.46
Consensus pattern (21 bp):
AATGATCTTTGAACTTGTTTG
Found at i:14422542 original size:43 final size:43
Alignment explanation
Indices: 14422482--14422579 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
14422472 TCAAAACTGC
* *
14422482 TTAAATGA-TCTTTGAACTTGTTTGAATAATTTTTAAAGTTAT
1 TTAAATGAGTTTTTGAACTTGTTTGAATAATTTTTAAACTTAT
** *
14422524 TTAAATGAGTTTTTGAACTTGTTTGAATGGTTTTTAAACTTTT
1 TTAAATGAGTTTTTGAACTTGTTTGAATAATTTTTAAACTTAT
*
14422567 TTAAATAAGTTTT
1 TTAAATGAGTTTT
14422580 GAATTGCCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
42 8 0.16
43 41 0.84
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.52
Consensus pattern (43 bp):
TTAAATGAGTTTTTGAACTTGTTTGAATAATTTTTAAACTTAT
Found at i:14422579 original size:21 final size:22
Alignment explanation
Indices: 14422496--14422579 Score: 82
Period size: 21 Copynumber: 3.9 Consensus size: 22
14422486 ATGATCTTTG
*
14422496 AACTTGTTTGAATAA-TTTTTA
1 AACTTGTTTAAATAAGTTTTTA
* * * *
14422517 AAGTTATTTAAATGAGTTTTTG
1 AACTTGTTTAAATAAGTTTTTA
* *
14422539 AACTTGTTTGAAT-GGTTTTTA
1 AACTTGTTTAAATAAGTTTTTA
*
14422560 AACTTTTTTAAATAAGTTTT
1 AACTTGTTTAAATAAGTTTT
14422580 GAATTGCCTA
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
21 28 0.58
22 20 0.42
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.52
Consensus pattern (22 bp):
AACTTGTTTAAATAAGTTTTTA
Found at i:14422650 original size:23 final size:22
Alignment explanation
Indices: 14422608--14422659 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
14422598 CATGTGAAAA
*
14422608 TTTTCAAAATTACTTGAATGAG
1 TTTTGAAAATTACTTGAATGAG
* *
14422630 TTTTGAAAATTTACTTTAATGAT
1 TTTTGAAAA-TTACTTGAATGAG
14422653 TTTTGAA
1 TTTTGAA
14422660 CTTGTTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (22 bp):
TTTTGAAAATTACTTGAATGAG
Found at i:14422682 original size:21 final size:21
Alignment explanation
Indices: 14422653--14422702 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
14422643 CTTTAATGAT
*
14422653 TTTTGAACTTG-TTTAAATAG
1 TTTTAAACTTGTTTTAAATAG
*
14422673 CTTTTAAACTTGTTTTAATTAG
1 -TTTTAAACTTGTTTTAAATAG
14422695 TTTTAAAC
1 TTTTAAAC
14422703 CTCTTTTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (21 bp):
TTTTAAACTTGTTTTAAATAG
Found at i:14422709 original size:21 final size:22
Alignment explanation
Indices: 14422664--14422709 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
14422654 TTTGAACTTG
* *
14422664 TTTAAATAGCTTTTAAACTTGT
1 TTTAAATAGCTTTTAAACCTCT
*
14422686 TTTAATTAG-TTTTAAACCTCT
1 TTTAAATAGCTTTTAAACCTCT
14422707 TTT
1 TTT
14422710 GCATTTGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.28, C:0.11, G:0.07, T:0.54
Consensus pattern (22 bp):
TTTAAATAGCTTTTAAACCTCT
Found at i:14422899 original size:20 final size:20
Alignment explanation
Indices: 14422843--14422900 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
14422833 TAGTTTTGCC
*
14422843 CAAAATGTATGGATACATTT
1 CAAAATGTATCGATACATTT
* * * *
14422863 CCACATGTATTGCTACATTT
1 CAAAATGTATCGATACATTT
*
14422883 CAAAATATATCGATACAT
1 CAAAATGTATCGATACAT
14422901 GTGGTCTAGA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (20 bp):
CAAAATGTATCGATACATTT
Found at i:14432530 original size:18 final size:16
Alignment explanation
Indices: 14432504--14432545 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14432494 AATAAATATT
*
14432504 TAAAC-ATAAATTAAAC
1 TAAACAATAAAAT-AAC
14432520 TAAACTAATAAAATAAC
1 TAAAC-AATAAAATAAC
14432537 TAAACAATA
1 TAAACAATA
14432546 CCTAAATCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.39
17 8 0.35
18 6 0.26
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
TAAACAATAAAATAAC
Found at i:14441025 original size:35 final size:35
Alignment explanation
Indices: 14440954--14441027 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
14440944 CTCCCTCAGC
* *
14440954 TCATGTACACTCCCACACCGCACATAGCTAGGTCA
1 TCATGTACACTCCCACACCGCACATAGCAAGATCA
* *
14440989 TCATGTGCACTCCCACACCGCACATTA-CAATATCA
1 TCATGTACACTCCCACACCGCACA-TAGCAAGATCA
14441024 TCAT
1 TCAT
14441028 CAGCATCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 32 0.94
36 2 0.06
ACGTcount: A:0.30, C:0.36, G:0.11, T:0.23
Consensus pattern (35 bp):
TCATGTACACTCCCACACCGCACATAGCAAGATCA
Found at i:14443702 original size:35 final size:35
Alignment explanation
Indices: 14443599--14443694 Score: 120
Period size: 35 Copynumber: 2.7 Consensus size: 35
14443589 AAATGATCGG
* * * *
14443599 GCATAACCTTTACAACATGTCTTTTGCAAGATCAA
1 GCATAACCTTCAAAACTTGCCTTTTGCAAGATCAA
* *
14443634 GCATAACCTTCACAACTTGCCTTTTGCACGATCAA
1 GCATAACCTTCAAAACTTGCCTTTTGCAAGATCAA
* *
14443669 GCGTAACCTTCAAAACTTGGCTTTTG
1 GCATAACCTTCAAAACTTGCCTTTTG
14443695 TAGGATCAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (35 bp):
GCATAACCTTCAAAACTTGCCTTTTGCAAGATCAA
Found at i:14445103 original size:32 final size:32
Alignment explanation
Indices: 14445058--14445166 Score: 94
Period size: 32 Copynumber: 3.3 Consensus size: 32
14445048 GTTTTTCCCG
* *
14445058 AGCTTAACTATAACCCAAAGTGGTTTTTCAAA
1 AGCTCAACCATAACCCAAAGTGGTTTTTCAAA
* **
14445090 AGCTCAACCATAACTTTTCACAA-TGGTTTTTCACG
1 AGCTCAACCATAAC---CCA-AAGTGGTTTTTCAAA
* * *
14445125 GGCTCGACCAAAACCCAAAGTGGTTTTTCAAA
1 AGCTCAACCATAACCCAAAGTGGTTTTTCAAA
*
14445157 GGCTCAACCA
1 AGCTCAACCA
14445167 CTACCTACAA
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
31 2 0.03
32 33 0.55
35 23 0.38
36 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (32 bp):
AGCTCAACCATAACCCAAAGTGGTTTTTCAAA
Found at i:14445141 original size:67 final size:67
Alignment explanation
Indices: 14445069--14445209 Score: 205
Period size: 67 Copynumber: 2.1 Consensus size: 67
14445059 GCTTAACTAT
* * * *
14445069 AACCCAAAGTGGTTTTTCAAAAGCTCAACCA-TAACTTTTC-ACAATGGTTTTTCACGGGCTCGA
1 AACCCAAAGTGGTTTTTCAAAAGCTCAACCACT-AC-CTACAACAATGGTTTTTCACGGGATCAA
14445132 CCAA
64 CCAA
*
14445136 AACCCAAAGTGGTTTTTCAAAGGCTCAACCACTACCTACAACAATGGTTTTTCACGGGATCAACC
1 AACCCAAAGTGGTTTTTCAAAAGCTCAACCACTACCTACAACAATGGTTTTTCACGGGATCAACC
14445201 AA
66 AA
14445203 AACCCAA
1 AACCCAA
14445210 CAACTAAATT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
66 2 0.03
67 64 0.96
68 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (67 bp):
AACCCAAAGTGGTTTTTCAAAAGCTCAACCACTACCTACAACAATGGTTTTTCACGGGATCAACC
AA
Done.