Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 41 of 59
Found at i:14663753 original size:60 final size:59
Alignment explanation
Indices: 14663680--14663794 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 59
14663670 ATCATCACCT
* * * *
14663680 ACTCGTGGGAACTGCCCACGCCACCATATATAAATTGGGGCTTTAGGTCCCCTTTTACCC
1 ACTCGTGGGAACTGCCCACACCACCATATATAAA-TGAGGCTTCAAGTCCCCTTTTACCC
14663740 ACTCGTGGGAACTGCCCACACCACCATATATAAATGAGGCTTCAAGTCCCCTTTT
1 ACTCGTGGGAACTGCCCACACCACCATATATAAATGAGGCTTCAAGTCCCCTTTT
14663795 TTAAATCAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 18 0.35
60 33 0.65
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (59 bp):
ACTCGTGGGAACTGCCCACACCACCATATATAAATGAGGCTTCAAGTCCCCTTTTACCC
Found at i:14664447 original size:3 final size:3
Alignment explanation
Indices: 14664430--14664511 Score: 64
Period size: 3 Copynumber: 27.3 Consensus size: 3
14664420 TTAATATATA
*
14664430 TAT TA- TAT TATT TAT TAT TAT TAT TAT TAC TAT TA- TAT ATAT TA-
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * *
14664474 TATT TATT TAT TAT TCT TAT CAT TAT T-T AAT TAT TAT T
1 TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14664512 TTCACGCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
2 7 0.11
3 45 0.70
4 12 0.19
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:14664512 original size:34 final size:37
Alignment explanation
Indices: 14664424--14664512 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 37
14664414 ACCCACTTAA
14664424 TATATATATTATATTATTTATTATTATTATTATTACTAT
1 TATATATA-T-TATTATTTATTATTATTATTATTACTAT
*
14664463 TATATATATTA-TATTTA-T-TTATTATTCTTA-TCAT
1 TATATATATTATTATTTATTATTATTATTATTACT-AT
*
14664497 TATTTA-ATTATTATTT
1 TATATATATTATTATTT
14664513 TCACGCATGT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
33 5 0.11
34 23 0.50
35 1 0.02
36 6 0.13
37 2 0.04
38 1 0.02
39 8 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (37 bp):
TATATATATTATTATTTATTATTATTATTATTACTAT
Found at i:14665650 original size:19 final size:19
Alignment explanation
Indices: 14665623--14665660 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14665613 CCATTTGACT
14665623 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
*
14665642 TATTTGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
14665661 GTTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:14666898 original size:17 final size:18
Alignment explanation
Indices: 14666869--14666904 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14666859 TATAAAATAT
*
14666869 TATTTTTTCTAATTAAAA
1 TATTTTTTCTAATAAAAA
14666887 TATTTTTT-TAATAAAAA
1 TATTTTTTCTAATAAAAA
14666904 T
1 T
14666905 GATATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTTTTCTAATAAAAA
Found at i:14677963 original size:48 final size:49
Alignment explanation
Indices: 14677859--14678044 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
14677849 TGGTACAAAA
* * *
14677859 AATAAACAAATATTGGGCTTATTCTATTAATGTGATTTGTTTGAGCCAG
1 AATAAACAAATATTGGGCTTATTCTATTTATGTGATTTGTCTGAGCTAG
* * * *
14677908 AACAAACAAATATTGGGCTT-TTATATCTATGTGATTTGTCTGGGCTAG
1 AATAAACAAATATTGGGCTTATTCTATTTATGTGATTTGTCTGAGCTAG
* * * * *
14677956 AATAAACAAATATTGGGATTAGTCTATTTATGTGATTTATTTGAGCTAA
1 AATAAACAAATATTGGGCTTATTCTATTTATGTGATTTGTCTGAGCTAG
* * * *
14678005 AATAAATAGATATTGGGCTT-TTCTATTTATTTAATTTGTC
1 AATAAACAAATATTGGGCTTATTCTATTTATGTGATTTGTC
14678045 AGTCCACATA
Statistics
Matches: 112, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
48 55 0.49
49 57 0.51
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (49 bp):
AATAAACAAATATTGGGCTTATTCTATTTATGTGATTTGTCTGAGCTAG
Found at i:14678025 original size:97 final size:97
Alignment explanation
Indices: 14677859--14678044 Score: 255
Period size: 97 Copynumber: 1.9 Consensus size: 97
14677849 TGGTACAAAA
* * * *
14677859 AATAAACAAATATTGGGCTTATTCTATTAATGTGATTTGTTTGAGCCAGAACAAACAAATATTGG
1 AATAAACAAATATTGGGATTAGTCTATTAATGTGATTTATTTGAGCCAAAACAAACAAATATTGG
*
14677924 GCTTTTATATCTATGTGATTTGTCTGGGCTAG
66 GCTTTTATATCTATGTAATTTGTCTGGGCTAG
* * * * *
14677956 AATAAACAAATATTGGGATTAGTCTATTTATGTGATTTATTTGAGCTAAAATAAATAGATATTGG
1 AATAAACAAATATTGGGATTAGTCTATTAATGTGATTTATTTGAGCCAAAACAAACAAATATTGG
* * *
14678021 GCTTTTCTATTTATTTAATTTGTC
66 GCTTTTATATCTATGTAATTTGTC
14678045 AGTCCACATA
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
97 76 1.00
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (97 bp):
AATAAACAAATATTGGGATTAGTCTATTAATGTGATTTATTTGAGCCAAAACAAACAAATATTGG
GCTTTTATATCTATGTAATTTGTCTGGGCTAG
Found at i:14689777 original size:19 final size:20
Alignment explanation
Indices: 14689746--14689784 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
14689736 TGAGAAGCTC
14689746 TTAAAAAAGTAAAATTTTTT
1 TTAAAAAAGTAAAATTTTTT
14689766 TTAAAAAA-TAAAATTTTTT
1 TTAAAAAAGTAAAATTTTTT
14689785 AAAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TTAAAAAAGTAAAATTTTTT
Found at i:14689790 original size:19 final size:19
Alignment explanation
Indices: 14689748--14689791 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14689738 AGAAGCTCTT
* *
14689748 AAAAAAGTAAAATTTTTTT
1 AAAAAAATAAAATTTTTTA
*
14689767 TAAAAAATAAAATTTTTTA
1 AAAAAAATAAAATTTTTTA
14689786 AAAAAA
1 AAAAAA
14689792 GAACTTCAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
AAAAAAATAAAATTTTTTA
Found at i:14692453 original size:28 final size:27
Alignment explanation
Indices: 14692421--14692473 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
14692411 TTTGGAGCAT
*
14692421 AAGGGTAAAA-TGATAATTTTGCCACCCC
1 AAGGGCAAAATTG-TAATTTT-CCACCCC
14692449 AAGGGCAAAATTGTAATTTTCCACC
1 AAGGGCAAAATTGTAATTTTCCACC
14692474 ACCAGGACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 16 0.70
29 2 0.09
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAATTGTAATTTTCCACCCC
Found at i:14694998 original size:22 final size:22
Alignment explanation
Indices: 14694970--14695012 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14694960 TTCAGTTGGT
*
14694970 ATCAGAGCTTTTGGTTTTAAAA
1 ATCAGAGCTTTTGGCTTTAAAA
14694992 ATCAGAGCTTTTGGCTTTAAA
1 ATCAGAGCTTTTGGCTTTAAA
14695013 GTGGTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (22 bp):
ATCAGAGCTTTTGGCTTTAAAA
Found at i:14697455 original size:10 final size:10
Alignment explanation
Indices: 14697427--14697463 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
14697417 CCTCACCAAA
14697427 CATCAAATAT
1 CATCAAATAT
*
14697437 CACCAAAATAT
1 CATC-AAATAT
14697448 CATCAAATAT
1 CATCAAATAT
14697458 CATCAA
1 CATCAA
14697464 TTTCAGTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (10 bp):
CATCAAATAT
Found at i:14716217 original size:29 final size:29
Alignment explanation
Indices: 14716177--14716249 Score: 74
Period size: 30 Copynumber: 2.5 Consensus size: 29
14716167 TTATCAAAAA
* * *
14716177 TTTCCATCAGAATTTTCGTGAAAAATGCT
1 TTTCCAACAGAATTTCCATGAAAAATGCT
* * *
14716206 TTTTCAACAGAAAATTCCATGAGAAATGCT
1 TTTCCAACAG-AATTTCCATGAAAAATGCT
*
14716236 TTTCCAACAAAATT
1 TTTCCAACAGAATT
14716250 GCTACGATAT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 11 0.32
30 23 0.68
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (29 bp):
TTTCCAACAGAATTTCCATGAAAAATGCT
Found at i:14726255 original size:2 final size:2
Alignment explanation
Indices: 14726250--14726275 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14726240 CCCCCCCATA
14726250 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
14726276 CCCCCTTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:14731324 original size:22 final size:22
Alignment explanation
Indices: 14731299--14731347 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
14731289 ATTGCTGCAA
14731299 TAAAAAAA-GAATAATTAATTAT
1 TAAAAAAATGAATAATTAATT-T
* *
14731321 TAAAAAAATTAATATTTAATTT
1 TAAAAAAATGAATAATTAATTT
14731343 TAAAA
1 TAAAA
14731348 TTTTAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
TAAAAAAATGAATAATTAATTT
Found at i:14731370 original size:28 final size:31
Alignment explanation
Indices: 14731315--14731373 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
14731305 AAGAATAATT
14731315 AATTATTAAAAAAATTAATATTTAATTTTAA
1 AATTATTAAAAAAATTAATATTTAATTTTAA
** *
14731346 AATT-TTAAAAATTTTAA-ATTTATTTTTA
1 AATTATTAAAAAAATTAATATTTAATTTTA
14731374 TAATGATGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.40
30 11 0.44
31 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (31 bp):
AATTATTAAAAAAATTAATATTTAATTTTAA
Found at i:14738111 original size:70 final size:71
Alignment explanation
Indices: 14737984--14738159 Score: 230
Period size: 70 Copynumber: 2.5 Consensus size: 71
14737974 AAAATCATAA
* * *
14737984 AGCCCTAGTTGACTATAGAGGAAGCATAGTCGATCTTGTTTCAAAAAGATCAAGAAAATCAAGTT
1 AGCCATAGTCGACTATAGAGGAAGCATAGTCGACCTTGTTTCAAAAAGATCAAGAAAATCAAGTT
*
14738049 TAAAAT
66 GAAAAT
* *
14738055 AGCCATAGTCGACTACAGAGGAAGCATAGTC-ACCTTG-TTCTAGAAAGATCAAGAAAATCAAGT
1 AGCCATAGTCGACTATAGAGGAAGCATAGTCGACCTTGTTTC-AAAAAGATCAAGAAAATCAAGT
*
14738118 TGAGAAT
65 TGAAAAT
* * * *
14738125 AGCCATAGTCAACTATAAAGGAAGTATAGTTGACC
1 AGCCATAGTCGACTATAGAGGAAGCATAGTCGACC
14738160 CTAATAAGTC
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 3 0.03
70 57 0.63
71 31 0.34
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (71 bp):
AGCCATAGTCGACTATAGAGGAAGCATAGTCGACCTTGTTTCAAAAAGATCAAGAAAATCAAGTT
GAAAAT
Found at i:14739580 original size:2 final size:2
Alignment explanation
Indices: 14739573--14739597 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14739563 TCAGAATAAC
14739573 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14739598 GTAGAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14739820 original size:19 final size:20
Alignment explanation
Indices: 14739782--14739820 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14739772 ATAATAAAAA
*
14739782 TCAATCATCAGTATACCATC
1 TCAATCATCAGTACACCATC
*
14739802 TCAAT-ATCAGTACAGCATC
1 TCAATCATCAGTACACCATC
14739821 GAATTTTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (20 bp):
TCAATCATCAGTACACCATC
Found at i:14740040 original size:24 final size:24
Alignment explanation
Indices: 14740011--14740056 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
14740001 TAATAGTTAA
14740011 TGTTCCAAAACTGCCCCTAGATGG
1 TGTTCCAAAACTGCCCCTAGATGG
*
14740035 TGTTCCAAAATTGCCCCTAGAT
1 TGTTCCAAAACTGCCCCTAGAT
14740057 AGTTTTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (24 bp):
TGTTCCAAAACTGCCCCTAGATGG
Found at i:14761853 original size:20 final size:20
Alignment explanation
Indices: 14761828--14761869 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
14761818 GGAAAAAGAA
* *
14761828 GAAGAAGTTGCTGGAGAAAT
1 GAAGAAGCTGCTGGAAAAAT
14761848 GAAGAAGCTGCTGGAAAAAT
1 GAAGAAGCTGCTGGAAAAAT
14761868 GA
1 GA
14761870 GATCTTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.33, T:0.17
Consensus pattern (20 bp):
GAAGAAGCTGCTGGAAAAAT
Found at i:14772199 original size:20 final size:20
Alignment explanation
Indices: 14772174--14772213 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14772164 TCAAAAATTT
*
14772174 TTTTAATTGGTTGAAGTTGA
1 TTTTAATTGGTTAAAGTTGA
14772194 TTTTAATTGGTTAAAGTTGA
1 TTTTAATTGGTTAAAGTTGA
14772214 ATGAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (20 bp):
TTTTAATTGGTTAAAGTTGA
Found at i:14773835 original size:54 final size:54
Alignment explanation
Indices: 14773771--14773876 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
14773761 TCTCTCTCAA
*
14773771 CTTTCTGAACTGTCTT-AACTCTGCCAACTCTCTGTTGAGCACCATCGTCATCAG
1 CTTTCTGAACTGT-TTGAACTCTGCCAACTCTCTATTGAGCACCATCGTCATCAG
** * *
14773825 CTTTCTGAACTGTTTGAGTTCTGTCAACTTTCTATTGAGCACCATCGTCATC
1 CTTTCTGAACTGTTTGAACTCTGCCAACTCTCTATTGAGCACCATCGTCATC
14773877 GGGTTGTGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 2 0.04
54 44 0.96
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (54 bp):
CTTTCTGAACTGTTTGAACTCTGCCAACTCTCTATTGAGCACCATCGTCATCAG
Found at i:14774271 original size:31 final size:31
Alignment explanation
Indices: 14774232--14774437 Score: 315
Period size: 31 Copynumber: 6.6 Consensus size: 31
14774222 CAGCGTTGGT
*
14774232 GTTATATGCATGGCGTGTTACCACATTTTAC
1 GTTATATGCATGGCGTGTTACCACATTCTAC
*
14774263 ATTATATGCATGGCGTGTTACCACATTCTAC
1 GTTATATGCATGGCGTGTTACCACATTCTAC
* *
14774294 CTTATATGCATGGCGTGTTACCACATT-TAAT
1 GTTATATGCATGGCGTGTTACCACATTCT-AC
*
14774325 GTTATATGCATGGCGTGTTACCACATTCTAT
1 GTTATATGCATGGCGTGTTACCACATTCTAC
14774356 GTTATATGCATGGCGTGTTACCACATTCTAC
1 GTTATATGCATGGCGTGTTACCACATTCTAC
* * *
14774387 GTTATGTGCATGGTGTGTTACCACATTATAC
1 GTTATATGCATGGCGTGTTACCACATTCTAC
*
14774418 GTTGTATGCATGGCGTGTTA
1 GTTATATGCATGGCGTGTTA
14774438 TAACATGACT
Statistics
Matches: 161, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
30 1 0.01
31 159 0.99
32 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (31 bp):
GTTATATGCATGGCGTGTTACCACATTCTAC
Found at i:14781946 original size:31 final size:31
Alignment explanation
Indices: 14781910--14782418 Score: 622
Period size: 31 Copynumber: 16.4 Consensus size: 31
14781900 ACCCATAACA
* *
14781910 TGGTAACACGCCATGCATATAATGTAAAATA
1 TGGTAACACGCCATGCATATAACGTAAAATG
* *
14781941 TGGTAACACGCCATGCATATAAAGTAGAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * *
14781972 TGATAACACGCCATGCATAAAACGTAGAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* *
14782003 TGGTAACACGCCATGCATATAACGTAAACTA
1 TGGTAACACGCCATGCATATAACGTAAAATG
* *
14782034 TGGTAACACGCCACGCATATAACGTAAATTG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * * *
14782065 TGGTAGCACGCCATGCATATAACGCAAACTA
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * *
14782096 TGGTAACAGGCCATGCATATAACATAGAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * * *
14782127 TGGTAACAGGCCCTGCATATATCGTAAAATA
1 TGGTAACACGCCATGCATATAACGTAAAATG
** * *
14782158 TGGTAACACATCATGCATATAACGTAAACTA
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * *
14782189 TGGTAACACGCCACGCATATAATGTAAACTG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * *
14782220 TGGTAACACACCACGCATATAACGTAAACTG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* *
14782251 TGGTAACACCCCATGCATATAACGTAAACTG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * * *
14782282 GGGTAACATGCCCTACATATAACGTAAAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* * *
14782313 TGGTAACACGCTATGTATATAACATAAAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
*
14782344 TGGTAACACTCCATGCATATAACGTAAAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
14782375 TGGTAACACGCCATGCATATAACGTAAAATG
1 TGGTAACACGCCATGCATATAACGTAAAATG
* *
14782406 TAGTAACATGCCA
1 TGGTAACACGCCA
14782419 ACGCTGACAC
Statistics
Matches: 412, Mismatches: 66, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 412 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (31 bp):
TGGTAACACGCCATGCATATAACGTAAAATG
Found at i:14783126 original size:46 final size:46
Alignment explanation
Indices: 14783073--14783163 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
14783063 GAGTCTGACA
* * * * *
14783073 AACTCTAAACGCTGGTGTGTCATAGATTCCCTCCATGGCATGTCAT
1 AACTCTAAACGCTAGCGTCTCACAGATTCCCTCCATGACATGTCAT
*
14783119 AACTCTAAACGCTAGCGTCTCACAGATTCCCTCTATGACATGTCA
1 AACTCTAAACGCTAGCGTCTCACAGATTCCCTCCATGACATGTCA
14783164 CTATGAGACC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (46 bp):
AACTCTAAACGCTAGCGTCTCACAGATTCCCTCCATGACATGTCAT
Found at i:14784396 original size:17 final size:19
Alignment explanation
Indices: 14784355--14784396 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
14784345 ATATATATAT
14784355 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
14784376 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
14784393 ATGA
1 ATGA
14784397 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:14784433 original size:37 final size:37
Alignment explanation
Indices: 14784391--14784509 Score: 186
Period size: 37 Copynumber: 3.2 Consensus size: 37
14784381 TAATGTTGTG
* *
14784391 TGATGATGTTGAAGTGTGCAAGGAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
14784428 TGATGATGTT-AGAGTGTGCAAGTAAGGAGTGCACACA
1 TGATGATGTTGA-AGTGTGCAAGTAAGGAGTGCACACA
* *
14784465 TGATGTTGTTGAAGTGTGCGAGTAAGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
14784502 TGATGATG
1 TGATGATG
14784510 ATATTGCATT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
36 1 0.01
37 73 0.97
38 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.35, T:0.25
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
Found at i:14784582 original size:2 final size:2
Alignment explanation
Indices: 14784577--14784605 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14784567 TATATATATA
14784577 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
14784606 TATAGAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:14785857 original size:23 final size:23
Alignment explanation
Indices: 14785825--14785946 Score: 90
Period size: 23 Copynumber: 5.3 Consensus size: 23
14785815 TGAACTCTGA
*
14785825 CGTGTTATAGATTCCCTCCATGG
1 CGTGTCATAGATTCCCTCCATGG
*
14785848 GGTGTCATAGA-TCCCTCCATGG
1 CGTGTCATAGATTCCCTCCATGG
* * **
14785870 TGTGTCACCA-ACTCTGAACT-C-TGG
1 CGTGTCA-TAGA-T-T-CCCTCCATGG
*
14785894 CGTGTTATAGATTCCCTCCATGG
1 CGTGTCATAGATTCCCTCCATGG
* * *
14785917 GGTGTCACAAATTCCCTCCATGG
1 CGTGTCATAGATTCCCTCCATGG
14785940 CGTGTCA
1 CGTGTCA
14785947 CCAACTCTGA
Statistics
Matches: 75, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
21 2 0.03
22 20 0.27
23 40 0.53
24 9 0.12
25 2 0.03
26 2 0.03
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (23 bp):
CGTGTCATAGATTCCCTCCATGG
Found at i:14785943 original size:46 final size:46
Alignment explanation
Indices: 14785835--14785946 Score: 122
Period size: 46 Copynumber: 2.4 Consensus size: 46
14785825 CGTGTTATAG
* *
14785835 ATTCCCTCCATGGGGTGTCATAGATCCCTCCATGGTGTGTCACCAA
1 ATTCCCTCCATGGCGTGTCATAGATCCCTCCATGGGGTGTCACCAA
* ** *
14785881 CTCTGAACT-C-TGGCGTGTTATAGATTCCCTCCATGGGGTGTCA-CAA
1 AT-T-CCCTCCATGGCGTGTCATAGA-TCCCTCCATGGGGTGTCACCAA
14785927 ATTCCCTCCATGGCGTGTCA
1 ATTCCCTCCATGGCGTGTCA
14785947 CCAACTCTGA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
44 2 0.04
45 2 0.04
46 26 0.51
47 19 0.37
48 2 0.04
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.29
Consensus pattern (46 bp):
ATTCCCTCCATGGCGTGTCATAGATCCCTCCATGGGGTGTCACCAA
Found at i:14785947 original size:23 final size:23
Alignment explanation
Indices: 14785777--14785947 Score: 82
Period size: 23 Copynumber: 7.4 Consensus size: 23
14785767 TAAAAGGCTA
14785777 GCGTGTCACAAATTCCCTCCATG
1 GCGTGTCACAAATTCCCTCCATG
* * **
14785800 GCGTGTTACCAACTCTGAACT-C-TG
1 GCGTGTCA-CAAAT-T-CCCTCCATG
* * * *
14785824 ACGTGTTATAGATTCCCTCCATG
1 GCGTGTCACAAATTCCCTCCATG
* * *
14785847 GGGTGTCATAGA-TCCCTCCATG
1 GCGTGTCACAAATTCCCTCCATG
* * **
14785869 GTGTGTCACCAACTCTGAACT-C-TG
1 GCGTGTCA-CAAAT-T-CCCTCCATG
* * *
14785893 GCGTGTTATAGATTCCCTCCATG
1 GCGTGTCACAAATTCCCTCCATG
*
14785916 GGGTGTCACAAATTCCCTCCATG
1 GCGTGTCACAAATTCCCTCCATG
14785939 GCGTGTCAC
1 GCGTGTCAC
14785948 CAACTCTGAA
Statistics
Matches: 106, Mismatches: 31, Indels: 22
0.67 0.19 0.14
Matches are distributed among these distances:
21 4 0.04
22 21 0.20
23 52 0.49
24 21 0.20
25 4 0.04
26 4 0.04
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (23 bp):
GCGTGTCACAAATTCCCTCCATG
Found at i:14785968 original size:70 final size:70
Alignment explanation
Indices: 14785779--14785986 Score: 330
Period size: 69 Copynumber: 3.0 Consensus size: 70
14785769 AAAGGCTAGC
*
14785779 GTGTCACAAATTCCCTCCATGGCGTGTTACCAACTCTGAACTCTGACGTGTTATAGATTCCCTCC
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACTCTGACGTGTTATAGATTCCCTCC
14785844 ATGGG
66 ATGGG
* * * *
14785849 GTGTCATAGA-TCCCTCCATGGTGTGTCACCAACTCTGAACTCTGGCGTGTTATAGATTCCCTCC
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACTCTGACGTGTTATAGATTCCCTCC
14785913 ATGGG
66 ATGGG
* *
14785918 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGT-TGACGTGTCACAGATTCCCTC
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAAC-TCTGACGTGTTATAGATTCCCTC
14785982 CATGG
65 CATGG
14785987 CATGTCACCA
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
69 64 0.51
70 60 0.48
71 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (70 bp):
GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACTCTGACGTGTTATAGATTCCCTCC
ATGGG
Found at i:14785969 original size:47 final size:47
Alignment explanation
Indices: 14785918--14786135 Score: 233
Period size: 47 Copynumber: 4.6 Consensus size: 47
14785908 CCTCCATGGG
*
14785918 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGTTGAC
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGAC
* * *
14785965 GTGTCACAGATTCCCTCCATGGCATGTCACCAACTCTGAACGCT-AGT
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGA-C
* * * *
14786012 GTGTCACAGATTCCCTCCATGGCGTGTCACCAACTCTAAATGCTGGC
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGAC
* * ** * * *
14786059 GTGTCACAAATTCACTTCATAACGTGTCACCAACTCTAAACTCTGGC
1 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGAC
* * * *
14786106 ATG-CTACAGATTCCCTCTATGGCGTTTCAC
1 GTGTC-ACAAATTCCCTCCATGGCGTGTCAC
14786136 AGATTTCTTC
Statistics
Matches: 144, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
46 2 0.01
47 142 0.99
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGAC
Found at i:14786025 original size:94 final size:94
Alignment explanation
Indices: 14785918--14786135 Score: 258
Period size: 94 Copynumber: 2.3 Consensus size: 94
14785908 CCTCCATGGG
* * * * *
14785918 GTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGTTGACGTGTCACAGATTCCCTCC
1 GTGTCACAGATTCCCTCCATGGCGTGTCACCAACTCTAAACGCTGACGTGTCACAAATTCACTCC
** * *
14785983 ATGGCATGTCACCAACTCTGAACGCTAGT
66 ATAACATGTCACCAACTCTAAACGCTAGC
* * *
14786012 GTGTCACAGATTCCCTCCATGGCGTGTCACCAACTCTAAATGCTGGCGTGTCACAAATTCACTTC
1 GTGTCACAGATTCCCTCCATGGCGTGTCACCAACTCTAAACGCTGACGTGTCACAAATTCACTCC
* * *
14786077 ATAACGTGTCACCAACTCTAAACTCTGGC
66 ATAACATGTCACCAACTCTAAACGCTAGC
* * *
14786106 ATG-CTACAGATTCCCTCTATGGCGTTTCAC
1 GTGTC-ACAGATTCCCTCCATGGCGTGTCAC
14786136 AGATTTCTTC
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 104 0.99
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (94 bp):
GTGTCACAGATTCCCTCCATGGCGTGTCACCAACTCTAAACGCTGACGTGTCACAAATTCACTCC
ATAACATGTCACCAACTCTAAACGCTAGC
Found at i:14786084 original size:117 final size:116
Alignment explanation
Indices: 14785727--14786088 Score: 320
Period size: 117 Copynumber: 3.1 Consensus size: 116
14785717 CTTTGAACAC
* * * * * *
14785727 TAACGTCTCACAGATTCTCTCCATGGTATGTCACCAATTCTAAAAGGCTAGCGTGTCACAAATTC
1 TAACGTGTCACAGATTCCCTCCATGGTATGTCACCAACTCT-GAACGCTAGCGTGTCACAGATTC
* * * * * * *
14785792 CCTCCATGGCGTGTTACCAACTCTGAACTCTGACGTGTTATAGATTCCCTCCA
65 CCTCCATGGCGTGTCACCAACTCT-AACTCTGGCGTGTCACAAATTCACTTCA
*** * * * * * *
14785845 TGGGGTGTCATAGA-TCCCTCCATGGTGTGTCACCAACTCTGAACTCTGGCGTGTTATAGATTCC
1 TAACGTGTCACAGATTCCCTCCATGGTATGTCACCAACTCTGAACGCTAGCGTGTCACAGATTCC
* * ** * * *
14785909 CTCCATGGGGTGTCA-CAAAT-TCCCTCCATGGCGTGTCACCAACTCTGAACGT--
66 CTCCATGGCGTGTCACCAACTCTAACT-C-TGGCGTGTCA-CAAAT-T-CACTTCA
* * *
14785961 TGACGTGTCACAGATTCCCTCCATGGCATGTCACCAACTCTGAACGCTAGTGTGTCACAGATTCC
1 TAACGTGTCACAGATTCCCTCCATGGTATGTCACCAACTCTGAACGCTAGCGTGTCACAGATTCC
*
14786026 CTCCATGGCGTGTCACCAACTCTAAATGCTGGCGTGTCACAAATTCACTTCA
66 CTCCATGGCGTGTCACCAACTCTAACT-CTGGCGTGTCACAAATTCACTTCA
14786078 TAACGTGTCAC
1 TAACGTGTCAC
14786089 CAACTCTAAA
Statistics
Matches: 185, Mismatches: 49, Indels: 21
0.73 0.19 0.08
Matches are distributed among these distances:
113 2 0.01
114 2 0.01
115 15 0.08
116 44 0.24
117 95 0.51
118 24 0.13
119 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (116 bp):
TAACGTGTCACAGATTCCCTCCATGGTATGTCACCAACTCTGAACGCTAGCGTGTCACAGATTCC
CTCCATGGCGTGTCACCAACTCTAACTCTGGCGTGTCACAAATTCACTTCA
Found at i:14788127 original size:21 final size:21
Alignment explanation
Indices: 14788098--14788138 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14788088 TTTTAGTTAT
*
14788098 CTATATTGATATGATGTTTTG
1 CTATATTGATATGATATTTTG
* *
14788119 CTATGTTGATGTGATATTTT
1 CTATATTGATATGATATTTT
14788139 CTTGCTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.20, T:0.54
Consensus pattern (21 bp):
CTATATTGATATGATATTTTG
Found at i:14789057 original size:17 final size:16
Alignment explanation
Indices: 14789016--14789057 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
14789006 GTATAAAATC
14789016 ATAATTAATATTTTTAA
1 ATAATTAA-ATTTTTAA
14789033 AT-ATTAAATTTATTAA
1 ATAATTAAATTT-TTAA
14789049 ATAATTAAA
1 ATAATTAAA
14789058 ATGTTCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.17
16 11 0.48
17 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTAAATTTTTAA
Found at i:14789136 original size:20 final size:19
Alignment explanation
Indices: 14789089--14789139 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
14789079 GTCATATTAT
14789089 ATAATA-TAAA-TAATTTA
1 ATAATATTAAATTAATTTA
14789106 ATAATATTAAATTAATTT-
1 ATAATATTAAATTAATTTA
14789124 ATATATCATTAAATTA
1 ATA-AT-ATTAAATTA
14789140 TTAATACGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.20
18 7 0.23
19 8 0.27
20 9 0.30
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATATTAAATTAATTTA
Found at i:14789436 original size:17 final size:16
Alignment explanation
Indices: 14789396--14789446 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
14789386 TACTAATAAG
14789396 TAATA-TAAAATTATA
1 TAATATTAAAATTATA
*
14789411 TAATCTTAAATATTATA
1 TAATATTAAA-ATTATA
*
14789428 TGATATTAATAAATTATA
1 TAATATT-A-AAATTATA
14789446 T
1 T
14789447 TTTATTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 4 0.14
16 4 0.14
17 11 0.38
18 8 0.28
19 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
TAATATTAAAATTATA
Found at i:14789922 original size:30 final size:30
Alignment explanation
Indices: 14789881--14789959 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
14789871 AATTATTAAT
14789881 TATAAAAATTTATTTGATTTA-AAGTAAAAA
1 TATAAAAATTTATTTGATTTATAA-TAAAAA
* * *
14789911 TATAAAGATTTAATTGA-ATATAATAAAAA
1 TATAAAAATTTATTTGATTTATAATAAAAA
* *
14789940 AATAAAAATTTATTTAATTT
1 TATAAAAATTTATTTGATTT
14789960 TTTTAAATAG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 21 0.54
30 18 0.46
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (30 bp):
TATAAAAATTTATTTGATTTATAATAAAAA
Found at i:14801866 original size:16 final size:17
Alignment explanation
Indices: 14801834--14801867 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14801824 AGCAGTTATT
*
14801834 AAGAAAGCGCCGGAGAG
1 AAGAAAGCGCAGGAGAG
14801851 AAGAAAG-GCAGGAGAG
1 AAGAAAGCGCAGGAGAG
14801867 A
1 A
14801868 TACAGGGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.47, C:0.12, G:0.41, T:0.00
Consensus pattern (17 bp):
AAGAAAGCGCAGGAGAG
Found at i:14804012 original size:32 final size:32
Alignment explanation
Indices: 14803976--14804086 Score: 109
Period size: 32 Copynumber: 3.4 Consensus size: 32
14803966 TTTATCGGGA
*
14803976 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* * *
14804008 TCAACCACAACCCTTCACAA-TGATTTTT-AATGAGC
1 TCAACCA-AAACC--CA-AAGTGGTTTTTCAAAG-GC
*
14804043 TCAACCAAAACCCAAAGTGGTTTTTCAAAAGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
*
14804075 TCAACCACAACC
1 TCAACCAAAACC
14804087 TACAACAATG
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
31 2 0.03
32 28 0.44
33 6 0.10
34 7 0.11
35 18 0.29
36 2 0.03
ACGTcount: A:0.38, C:0.28, G:0.11, T:0.23
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
Found at i:14804062 original size:67 final size:67
Alignment explanation
Indices: 14803976--14804102 Score: 211
Period size: 67 Copynumber: 1.9 Consensus size: 67
14803966 TTTATCGGGA
* * *
14803976 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCCTTC-ACAATGATTTTTAATG
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAAGCTCAACCACAA-CCTACAACAATGATTTTTAATG
14804040 AGC
65 AGC
14804043 TCAACCAAAACCCAAAGTGGTTTTTCAAAAGCTCAACCACAACCTACAACAATGATTTTT
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAAGCTCAACCACAACCTACAACAATGATTTTT
14804103 CTCACGGGAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 4 0.07
67 52 0.93
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (67 bp):
TCAACCAAAACCCAAAGTGGTTTTTCAAAAGCTCAACCACAACCTACAACAATGATTTTTAATGA
GC
Found at i:14808483 original size:42 final size:41
Alignment explanation
Indices: 14808409--14808534 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 41
14808399 GTAATTATAT
* * * *
14808409 TGACTCGGCTATGTACGAGTAGGAGTGTGCATAAGTCGATGC
1 TGACCCGGCTATGTGCGAGT-GGAGTGCGCATAAGCCGATGC
* *
14808451 TGACCCTGCTATGTGCGAGTGGTAGTGCGCATAAGCCGCTGC
1 TGACCCGGCTATGTGCGAGTGG-AGTGCGCATAAGCCGATGC
*
14808493 TGACTCGGCTATGTGCGAGTGAGAGTGCGCATAAGCCGATGC
1 TGACCCGGCTATGTGCGAGTG-GAGTGCGCATAAGCCGATGC
14808535 ATATGAGCTG
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.03
42 70 0.96
43 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (41 bp):
TGACCCGGCTATGTGCGAGTGGAGTGCGCATAAGCCGATGC
Found at i:14809022 original size:19 final size:19
Alignment explanation
Indices: 14808998--14809034 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14808988 AGGTTTGGTG
14808998 AGAAACCCTCGGCCAGTTA
1 AGAAACCCTCGGCCAGTTA
*
14809017 AGAAACCCTCGGCTAGTT
1 AGAAACCCTCGGCCAGTT
14809035 GATAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (19 bp):
AGAAACCCTCGGCCAGTTA
Found at i:14815088 original size:14 final size:14
Alignment explanation
Indices: 14815071--14815106 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14815061 CCAAATAATC
14815071 AAAATTAATTAACT
1 AAAATTAATTAACT
* *
14815085 AAAACTAATTGACT
1 AAAATTAATTAACT
14815099 AAAATTAA
1 AAAATTAA
14815107 AATCGAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (14 bp):
AAAATTAATTAACT
Found at i:14817699 original size:32 final size:32
Alignment explanation
Indices: 14817663--14817773 Score: 116
Period size: 32 Copynumber: 3.4 Consensus size: 32
14817653 TTTATCAGGA
*
14817663 TCAACTAAAACCCAAAGTGGTTTTTTAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTTAAAGGC
* **
14817695 TCAACCACAACCCTTCACAA-TGGTTTTTTACGGGC
1 TCAACCA-AAACC--CA-AAGTGGTTTTTTAAAGGC
* *
14817730 TCAACCAAAACCCAAAGTAGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTTAAAGGC
*
14817762 TCAACCACAACC
1 TCAACCAAAACC
14817774 TACAACAATG
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
31 2 0.03
32 30 0.47
33 4 0.06
34 4 0.06
35 22 0.34
36 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGGTTTTTTAAAGGC
Found at i:14817724 original size:35 final size:33
Alignment explanation
Indices: 14817680--14817789 Score: 116
Period size: 35 Copynumber: 3.2 Consensus size: 33
14817670 AAACCCAAAG
14817680 TGGTTTTTTAAAGGCTCAACCACAACCCTTCACAA
1 TGGTTTTTTAAAGGCTCAACCACAA-CC-TCACAA
** *
14817715 TGGTTTTTTACGGGCTCAACCAAAACC-CA-AA
1 TGGTTTTTTAAAGGCTCAACCACAACCTCACAA
* *
14817746 GTAGTTTTTCAAAGGCTCAACCACAACCTACAACAA
1 -TGGTTTTTTAAAGGCTCAACCACAACCT-C-ACAA
14817782 TGGTTTTT
1 TGGTTTTT
14817790 CTCACGGGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
31 2 0.03
32 24 0.39
34 3 0.05
35 30 0.49
36 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (33 bp):
TGGTTTTTTAAAGGCTCAACCACAACCTCACAA
Found at i:14817740 original size:67 final size:69
Alignment explanation
Indices: 14817660--14817813 Score: 224
Period size: 67 Copynumber: 2.3 Consensus size: 69
14817650 GTTTTTATCA
* * * *
14817660 GGATCAACTAAAACCCAAAGTGGTTTTTTAAAGGCTCAACCACAACCCTTC-ACAATGGTTTTT-
1 GGATCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACCACAA-CCTACAACAATGGTTTTTC
14817723 T-ACG
65 TCACG
*
14817727 GGCTCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACCACAACCTACAACAATGGTTTTTCT
1 GGATCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACCACAACCTACAACAATGGTTTTTCT
14817792 CACG
66 CACG
*
14817796 GGATCAACCAAAATCCAA
1 GGATCAACCAAAACCCAA
14817814 CAACTAACCT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
66 4 0.05
67 53 0.69
68 1 0.01
69 19 0.25
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.24
Consensus pattern (69 bp):
GGATCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACCACAACCTACAACAATGGTTTTTCT
CACG
Found at i:14822756 original size:35 final size:34
Alignment explanation
Indices: 14822706--14822775 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 34
14822696 TTTCACCAAG
* * *
14822706 CTTTACAATTGTTTTTACCAGGCTCAGCCAAAAC
1 CTTTACAATAGTTTTTACCAGGATCAACCAAAAC
*
14822740 CTTTCACAATAGTTTTTACCGGGATCAACCAAAAC
1 CTTT-ACAATAGTTTTTACCAGGATCAACCAAAAC
14822775 C
1 C
14822776 CAACAACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 4 0.13
35 27 0.87
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.30
Consensus pattern (34 bp):
CTTTACAATAGTTTTTACCAGGATCAACCAAAAC
Found at i:14832577 original size:2 final size:2
Alignment explanation
Indices: 14832565--14832632 Score: 77
Period size: 2 Copynumber: 35.0 Consensus size: 2
14832555 ATTGCTTCAG
* * *
14832565 AT AT AT GT AT AT AT AT AT AT AT A- AG AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
14832606 AT AT A- AG AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14832633 CTTAACAATT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
1 2 0.04
2 54 0.96
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.46
Consensus pattern (2 bp):
AT
Found at i:14832597 original size:25 final size:25
Alignment explanation
Indices: 14832563--14832632 Score: 126
Period size: 23 Copynumber: 2.9 Consensus size: 25
14832553 CTATTGCTTC
14832563 AGATATATGTATATATATATATATA
1 AGATATATGTATATATATATATATA
14832588 AGATATATG--TATATATATATATA
1 AGATATATGTATATATATATATATA
14832611 AGATATATGTATATATATATAT
1 AGATATATGTATATATATATAT
14832633 CTTAACAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
23 23 0.53
25 20 0.47
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (25 bp):
AGATATATGTATATATATATATATA
Found at i:14832907 original size:19 final size:18
Alignment explanation
Indices: 14832870--14832912 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
14832860 GGGTGAGAAA
*
14832870 AATATTTTATAATAAAAT
1 AATATTTTATAACAAAAT
*
14832888 ATTATTTTATAAACAAAAT
1 AATATTTTAT-AACAAAAT
14832907 AATATT
1 AATATT
14832913 AAAATATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATTTTATAACAAAAT
Found at i:14833294 original size:16 final size:16
Alignment explanation
Indices: 14833259--14833297 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14833249 ATTTGGAGGG
*
14833259 AATAAAATAAATAAAT
1 AATAAAATAAATAAAA
14833275 AATAAAAT-AATAAAAA
1 AATAAAATAAAT-AAAA
14833291 AATAAAA
1 AATAAAA
14833298 AGAATTGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AATAAAATAAATAAAA
Found at i:14834026 original size:17 final size:16
Alignment explanation
Indices: 14833994--14834050 Score: 55
Period size: 17 Copynumber: 3.6 Consensus size: 16
14833984 AAAACAGATA
*
14833994 AAAAAAAAGAA-AAAG
1 AAAAAAAAGAATGAAG
14834009 AAAAAAAAGAAGTGAAG
1 AAAAAAAAGAA-TGAAG
*
14834026 AAGAAAAAGAAATGAA-
1 AAAAAAAAG-AATGAAG
*
14834042 ATAAAAAAG
1 AAAAAAAAG
14834051 TGGGCATAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 11 0.31
16 7 0.20
17 15 0.43
18 2 0.06
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAAAAAGAATGAAG
Found at i:14834991 original size:60 final size:60
Alignment explanation
Indices: 14834838--14835535 Score: 965
Period size: 60 Copynumber: 11.6 Consensus size: 60
14834828 ATTTAAAAAA
*
14834838 GGGGACCTGAAGCCCCGATTTATAT-TGGGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAG
1 GGGGACCTGAAGCCCCGATTTATATAT-GGTGGCGTGGGTAGTTCCCACGAGTAGGT-AAAG
* * * *
14834899 GGAGACTTGAAGCCTCGATTTATATATGGTGGCGTGGGTAGTTCCTACGAGTAGGTAAAG
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * * *
14834959 GGGGACCTGAAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCTCACAAGTGGGTAAAG
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * *
14835019 GGAGACCTGAAGCCTCGATTTATAT-TGGGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAG
1 GGGGACCTGAAGCCCCGATTTATATAT-GGTGGCGTGGGTAGTTCCCACGAGTAGGT-AAAG
* * *
14835080 GGGGACCTAAAGCCCCGATTTATATTTGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAG
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * *
14835140 GGGGGCTTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAG
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * * *
14835200 GGGGACCTGAAGCCCCAATTTATAT-TAAGTGACGTGGGTAGTTCCCATGAGTAGGTAAAAG
1 GGGGACCTGAAGCCCCGATTTATATAT-GGTGGCGTGGGTAGTTCCCACGAGTAGGT-AAAG
* * * *
14835261 GGGGACCTGAAGCCTCGATTTTTATATGGTGGCGTGGGTAATTCCCACGAGTAGGTAAAA
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * *
14835321 GGGGACCTAAAGCTCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * * * *
14835381 GGGGACCTAAAGCCCCGATTTATATATAGTGGCATAGGTAGTTCCCACGAGTAGGTAAAA
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
* * * *
14835441 GGGGACCTGAAGCCCCGATTTATATATAGTAGCATGGGTAGTTCCCACGAGTAGGTAAAA
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
14835501 GGGGACCTGAAGCCCCGA-TT-TATATGGTGGCGTGG
1 GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGG
14835536 CCAATTCCCA
Statistics
Matches: 565, Mismatches: 65, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
58 12 0.02
59 4 0.01
60 393 0.70
61 153 0.27
62 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (60 bp):
GGGGACCTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
Found at i:14835153 original size:181 final size:181
Alignment explanation
Indices: 14834838--14835535 Score: 1044
Period size: 181 Copynumber: 3.9 Consensus size: 181
14834828 ATTTAAAAAA
* *
14834838 GGGGACCTGAAGCCCCGATTTATATTGGGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGAG
1 GGGGACCTGAAGCCCCGATTTATATTGAGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGG
* * * * *
14834903 ACTTGAAGCCTCGATTTATATATGGTGGCGTGGGTAGTTCCTACGAGTAGGTAAAGGGGGACCTG
66 ACCTGAAGCCCCGATTTATATATGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTG
* * *
14834968 AAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCTCACAAGTGGGTAAAG
131 AAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAG
* * *
14835019 GGAGACCTGAAGCCTCGATTTATATTGGGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGG
1 GGGGACCTGAAGCCCCGATTTATATTGAGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGG
* * * * *
14835084 ACCTAAAGCCCCGATTTATATTTGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAGGGGGGCTTG
66 ACCTGAAGCCCCGATTTATATATGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTG
14835149 AAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAG
131 AAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAG
* * *
14835200 GGGGACCTGAAGCCCCAATTTATATTAAGTGACGTGGGTAGTTCCCATGAGTAGGTAAAAGGGGG
1 GGGGACCTGAAGCCCCGATTTATATTGAGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGG
* * * * *
14835265 ACCTGAAGCCTCGATTTTTATATGGTGGCGTGGGTAATTCCCACGAGTAGGTAAAAGGGGACCTA
66 ACCTGAAGCCCCGATTTATATATGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTG
* * *
14835330 AAGCTCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
131 AAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAG
* * * *
14835381 GGGGACCTAAAGCCCCGATTTATATAT-AGTGGCATAGGTAGTTCCCACGAGTAGGTAAAA-GGG
1 GGGGACCTGAAGCCCCGATTTATAT-TGAGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGG
* *
14835444 GACCTGAAGCCCCGATTTATATATAGTAGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCT
65 GACCTGAAGCCCCGATTTATATATGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCT
14835509 GAAGCCCCGA-TT-TATATGGTGGCGTGG
130 GAAGCCCCGATTTATATATGGTGGCGTGG
14835536 CCAATTCCCA
Statistics
Matches: 468, Mismatches: 48, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
178 15 0.03
179 2 0.00
180 69 0.15
181 381 0.81
182 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (181 bp):
GGGGACCTGAAGCCCCGATTTATATTGAGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGG
ACCTGAAGCCCCGATTTATATATGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTG
AAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAG
Found at i:14835196 original size:241 final size:239
Alignment explanation
Indices: 14834834--14835525 Score: 1030
Period size: 241 Copynumber: 2.9 Consensus size: 239
14834824 TTTAATTTAA
* * *
14834834 AAAAGGGGACCTGAAGCCCCGATTTATATTGGGTGACGTGGGTAGTTCCCACGAGTAGGTAAAAG
1 AAAAGGGGACCTAAAGCCCCGATTTATATTTGGTGGCGTGGGTAGTTCCCACGAGTAGGT-AAAG
* *
14834899 GGAGACTTGAAGCCTCGATTTATATATGGTGGCGTGGGTAGTTCCTACGAGTAGGTAAAGGGGGA
65 GGGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCC-ACGAGTAGGTAAAGGGGGA
* * *
14834964 CCTGAAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCTCACAAGTGGGT-AAAGGGAGACCTG
129 CCTGAAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAAGGG-GACCTG
*
14835028 AAGCCTCGATTTATAT-TGGGTGACGTGGGTAGTTCCCACGAGTAGGT
193 AAGCCTCGATTTATATAT-GGTGACGTGGGTAATTCCCACGAGTAGGT
*
14835075 AAAAGGGGGACCTAAAGCCCCGATTTATATTTGGTGGCATGGGTAGTTCCCACGAGTAGGTAAAG
1 AAAA-GGGGACCTAAAGCCCCGATTTATATTTGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAG
*
14835140 GGGGGCTTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCTCACGAGTAGGTAAAGGGGGA
65 GGGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTC-CACGAGTAGGTAAAGGGGGA
* * *
14835205 CCTGAAGCCCCAATTTATAT-TAAGTGACGTGGGTAGTTCCCATGAGTAGGTAAAAGGGGGACCT
129 CCTGAAGCCCCGATTTATATAT-AGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAA-GGGGACCT
* *
14835269 GAAGCCTCGATTTTTATATGGTGGCGTGGGTAATTCCCACGAGTAGGT
192 GAAGCCTCGATTTATATATGGTGACGTGGGTAATTCCCACGAGTAGGT
* * *
14835317 AAAAGGGGACCTAAAGCTCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAGG
1 AAAAGGGGACCTAAAGCCCCGATTTATATTTGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAGG
* * * * * *
14835382 GGGACCTAAAGCCCCGATTTATATATAGTGGCATAGGTAGTTCCCACGAGTAGGTAAAAGGGGAC
66 GGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTT-CCACGAGTAGGTAAAGGGGGAC
* *
14835447 CTGAAGCCCCGATTTATATATAGTAGCATGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTGAA
130 CTGAAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTGAA
*
14835512 GCCCCGATTTATAT
195 GCCTCGATTTATAT
14835526 GGTGGCGTGG
Statistics
Matches: 409, Mismatches: 34, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
240 24 0.06
241 271 0.66
242 110 0.27
243 4 0.01
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (239 bp):
AAAAGGGGACCTAAAGCCCCGATTTATATTTGGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAGG
GGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGTAGTTCCACGAGTAGGTAAAGGGGGACC
TGAAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCCCACGAGTAGGTAAAAGGGGACCTGAAG
CCTCGATTTATATATGGTGACGTGGGTAATTCCCACGAGTAGGT
Found at i:14837121 original size:38 final size:38
Alignment explanation
Indices: 14837077--14837167 Score: 146
Period size: 38 Copynumber: 2.4 Consensus size: 38
14837067 ATGCACAAGG
* *
14837077 CAATATCATCATCATGTGCTATCCTTACTCGTACATTT
1 CAATATCATCATCATGTGCTATCCCTACTCGCACATTT
* *
14837115 CCATATCATCATCATGTGCTCTCCCTACTCGCACATTT
1 CAATATCATCATCATGTGCTATCCCTACTCGCACATTT
14837153 CAATATCATCATCAT
1 CAATATCATCATCAT
14837168 CATCATGTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.26, C:0.31, G:0.07, T:0.36
Consensus pattern (38 bp):
CAATATCATCATCATGTGCTATCCCTACTCGCACATTT
Found at i:14837182 original size:44 final size:44
Alignment explanation
Indices: 14837119--14837207 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
14837109 ACATTTCCAT
** *
14837119 ATCATCATCATGTGCTCTCCCTACTCGCACATTTCAATATCATC
1 ATCATCATCATGTGCTCTCCCTACTAACACATGTCAATATCATC
* *
14837163 ATCATCATCATGTGTTCTCCCTACTAACACATGTCAATCTCATC
1 ATCATCATCATGTGCTCTCCCTACTAACACATGTCAATATCATC
14837207 A
1 A
14837208 CACAATGATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.34
Consensus pattern (44 bp):
ATCATCATCATGTGCTCTCCCTACTAACACATGTCAATATCATC
Found at i:14846362 original size:42 final size:41
Alignment explanation
Indices: 14846303--14846422 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 41
14846293 GTAATGATAT
*
14846303 TGACCCGACTATGTGCGAGTAGGAGTGTGCATAAGCCAATGC
1 TGACCCG-CTATGTGCGAGTGGGAGTGTGCATAAGCCAATGC
**
14846345 TGACCCAGCTATGTGCGAGTGGGAGTGTGCATAAGCCGCTGC
1 TGACCC-GCTATGTGCGAGTGGGAGTGTGCATAAGCCAATGC
** **
14846387 TGACTTGGCTATGTGCGAGTGGGAGTGCACATAAGC
1 TGAC-CCGCTATGTGCGAGTGGGAGTGTGCATAAGC
14846423 TTATGCATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 68 0.99
43 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.23
Consensus pattern (41 bp):
TGACCCGCTATGTGCGAGTGGGAGTGTGCATAAGCCAATGC
Found at i:14846474 original size:2 final size:2
Alignment explanation
Indices: 14846469--14846517 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
14846459 GTGATGATTG
14846469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14846511 AT AT AT A
1 AT AT AT A
14846518 NNNNNNNNNN
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14852822 original size:24 final size:24
Alignment explanation
Indices: 14852790--14852837 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14852780 GTAGATTCTA
14852790 TAACCGAGGTCGAATACATCTCTG
1 TAACCGAGGTCGAATACATCTCTG
14852814 TAACCGAGGTCGAATACATCTCTG
1 TAACCGAGGTCGAATACATCTCTG
14852838 CGTCTGAGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (24 bp):
TAACCGAGGTCGAATACATCTCTG
Found at i:14862506 original size:35 final size:35
Alignment explanation
Indices: 14862479--14862579 Score: 139
Period size: 35 Copynumber: 2.9 Consensus size: 35
14862469 TTAATTGTTT
14862479 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * * * *
14862514 AATTTAATTAATTAAGCTCAACAATTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
*
14862549 AATTTTAATCAATTAGGCCCAATGACTTAAT
1 AA-TTTAATCAATTAGGCCCAATAACTTAAT
14862580 CCATAAGACT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
35 32 0.59
36 22 0.41
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.35
Consensus pattern (35 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
Found at i:14863889 original size:2 final size:2
Alignment explanation
Indices: 14863877--14863939 Score: 90
Period size: 2 Copynumber: 31.0 Consensus size: 2
14863867 AAGCCATTTT
*
14863877 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
14863919 TA TA TA TT TA CA TA GTA TA TA
1 TA TA TA TA TA TA TA -TA TA TA
14863940 CGACTTTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
2 52 0.96
3 2 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:14873184 original size:21 final size:20
Alignment explanation
Indices: 14873159--14873199 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14873149 TTACTTTAAA
*
14873159 AATTACTTTTATTATAATTTT
1 AATTACTTTTA-GATAATTTT
*
14873180 AATTATTTTTAGATAATTTT
1 AATTACTTTTAGATAATTTT
14873200 TAACATAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
AATTACTTTTAGATAATTTT
Found at i:14873852 original size:22 final size:22
Alignment explanation
Indices: 14873796--14873857 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
14873786 CGTGAGTTGT
* * *
14873796 GCATTGCGTGACGAGGTTGTAG
1 GCATTGTGTGACTAGTTTGTAG
*
14873818 GAATTGCT-TGACTAGTTTGTAG
1 GCATTG-TGTGACTAGTTTGTAG
*
14873840 GCATTGTGTGACTGGTTT
1 GCATTGTGTGACTAGTTT
14873858 TTGGTAATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.18, C:0.11, G:0.34, T:0.37
Consensus pattern (22 bp):
GCATTGTGTGACTAGTTTGTAG
Found at i:14874695 original size:22 final size:22
Alignment explanation
Indices: 14874654--14874695 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14874644 AGGCATTAAG
*
14874654 TGAATGGATATTGTGTATTGTA
1 TGAATGGATATTGTGCATTGTA
14874676 TGAATGGATATTAG-GCATTG
1 TGAATGGATATT-GTGCATTG
14874696 CGTGTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.29, C:0.02, G:0.29, T:0.40
Consensus pattern (22 bp):
TGAATGGATATTGTGCATTGTA
Found at i:14882699 original size:66 final size:66
Alignment explanation
Indices: 14882551--14882691 Score: 196
Period size: 65 Copynumber: 2.1 Consensus size: 66
14882541 TGAATGTTAT
* * *
14882551 AGGTTGTGGTTGAGCCTTGGAAAAACCACTTTGTGTTTTAGTTTAGCCCATGAAAAATAGTGTAA
1 AGGTTGTGGTTGAGCCTTGGAAAAACCACTTTGGGTTTTAGTTGAGCCCATGAAAAACAGTGTAA
14882616 A
66 A
* * *
14882617 AGGTTGTGGTTGAGCCTT-GAAAAACCACTTTGGGTTTTGGTTGATCCCATGAAAAACCATTGCT
1 AGGTTGTGGTTGAGCCTTGGAAAAACCACTTTGGGTTTTAGTTGAGCCCATGAAAAA-CAGTG-T
14882681 -AA
64 AAA
14882683 AGGTTGTGG
1 AGGTTGTGG
14882692 CCGAGCCTAC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
65 34 0.51
66 32 0.48
67 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (66 bp):
AGGTTGTGGTTGAGCCTTGGAAAAACCACTTTGGGTTTTAGTTGAGCCCATGAAAAACAGTGTAA
A
Found at i:14892222 original size:23 final size:23
Alignment explanation
Indices: 14892188--14892278 Score: 121
Period size: 23 Copynumber: 4.0 Consensus size: 23
14892178 ATGCAATATT
*
14892188 ATATCAGA-TAGTCACACGATTCC
1 ATATCA-ACTAGTCACGCGATTCC
* *
14892211 ATATAAACTAGTCACGGGATTCC
1 ATATCAACTAGTCACGCGATTCC
* *
14892234 ATATCAACTACTCACGCAATTCC
1 ATATCAACTAGTCACGCGATTCC
14892257 ATATCAACTAGTCACGCGATTC
1 ATATCAACTAGTCACGCGATTC
14892279 ATACGCACCA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
22 1 0.02
23 57 0.98
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.26
Consensus pattern (23 bp):
ATATCAACTAGTCACGCGATTCC
Found at i:14895941 original size:20 final size:20
Alignment explanation
Indices: 14895898--14895942 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14895888 CAATTTATGA
* *
14895898 CAAAGACTGATGCATTCATG
1 CAAAAACTGATGCATCCATG
* *
14895918 CAAAAACTGATGCCTCCATT
1 CAAAAACTGATGCATCCATG
14895938 CAAAA
1 CAAAA
14895943 TCAAGCAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.22
Consensus pattern (20 bp):
CAAAAACTGATGCATCCATG
Found at i:14897415 original size:15 final size:15
Alignment explanation
Indices: 14897395--14897428 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
14897385 TAAAAAATTC
14897395 AAAAAAAT-TTTCAA
1 AAAAAAATATTTCAA
14897409 AAAAAAATATTTCAA
1 AAAAAAATATTTCAA
14897424 AAAAA
1 AAAAA
14897429 TTCAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAAAATATTTCAA
Found at i:14897444 original size:24 final size:25
Alignment explanation
Indices: 14897386--14897446 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 25
14897376 AAATCTTTTT
14897386 AAAAAA-TTCAAAAAAATTTTCAAAA
1 AAAAAATTTCAAAAAAA-TTTCAAAA
14897411 AAAAATATTTCAAAAAAA-TTCAAAA
1 AAAAA-ATTTCAAAAAAATTTCAAAA
14897436 AAAAAATTTCA
1 AAAAAATTTCA
14897447 TGTCAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 6 0.18
25 17 0.50
26 1 0.03
27 10 0.29
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (25 bp):
AAAAAATTTCAAAAAAATTTCAAAA
Found at i:14900387 original size:12 final size:12
Alignment explanation
Indices: 14900367--14900467 Score: 104
Period size: 12 Copynumber: 8.5 Consensus size: 12
14900357 TAGGCTTGAC
*
14900367 AAAATATTTCAA
1 AAAAAATTTCAA
14900379 AAAAAATTTCAAAA
1 AAAAAATTTC--AA
14900393 AAAAAATTTCAAA
1 AAAAAATTTC-AA
14900406 AAAAAATTTCAA
1 AAAAAATTTCAA
*
14900418 AAAAAATAT-AA
1 AAAAAATTTCAA
*
14900429 AAAAAA-CTC-A
1 AAAAAATTTCAA
14900439 AAAAAATGTT-AA
1 AAAAAAT-TTCAA
14900451 AAAAAA-TTCAA
1 AAAAAATTTCAA
14900462 AAAAAA
1 AAAAAA
14900468 GGTGGTAAGC
Statistics
Matches: 78, Mismatches: 4, Indels: 15
0.80 0.04 0.15
Matches are distributed among these distances:
10 10 0.13
11 16 0.21
12 27 0.35
13 13 0.17
14 12 0.15
ACGTcount: A:0.71, C:0.07, G:0.01, T:0.21
Consensus pattern (12 bp):
AAAAAATTTCAA
Found at i:14900394 original size:14 final size:14
Alignment explanation
Indices: 14900377--14900423 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
14900367 AAAATATTTC
14900377 AAAAAAAATTTCAA
1 AAAAAAAATTTCAA
14900391 AAAAAAAATTTC-A
1 AAAAAAAATTTCAA
14900404 AAAAAAAATTTCAA
1 AAAAAAAATTTCAA
14900418 AAAAAA
1 AAAAAA
14900424 TATAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.41
14 19 0.59
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAAAAATTTCAA
Found at i:14900432 original size:13 final size:13
Alignment explanation
Indices: 14900377--14900434 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
14900367 AAAATATTTC
14900377 AAAAAAAATTTCAA
1 AAAAAAAATTT-AA
*
14900391 AAAAAAAATTTCA
1 AAAAAAAATTTAA
*
14900404 AAAAAAAATTT-C
1 AAAAAAAATTTAA
*
14900416 AAAAAAAATATAA
1 AAAAAAAATTTAA
14900429 AAAAAA
1 AAAAAA
14900435 CTCAAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
12 10 0.26
13 18 0.46
14 11 0.28
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAAAAAATTTAA
Found at i:14900454 original size:13 final size:13
Alignment explanation
Indices: 14900367--14900423 Score: 89
Period size: 13 Copynumber: 4.4 Consensus size: 13
14900357 TAGGCTTGAC
*
14900367 AAAATATTTC-AA
1 AAAAAATTTCAAA
14900379 AAAAAATTTCAAAA
1 AAAAAATTTC-AAA
14900393 AAAAAATTTCAAA
1 AAAAAATTTCAAA
14900406 AAAAAATTTCAAA
1 AAAAAATTTCAAA
14900419 AAAAA
1 AAAAA
14900424 TATAAAAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
12 9 0.21
13 21 0.50
14 12 0.29
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAATTTCAAA
Found at i:14900671 original size:55 final size:56
Alignment explanation
Indices: 14900608--14900726 Score: 195
Period size: 55 Copynumber: 2.1 Consensus size: 56
14900598 TGGGCTGCCA
* *
14900608 ACTACCCACTGCCCTCCACTAACCAAACCCAATTCCCCCT-AAATTGTACGAGCCC
1 ACTACCCACTACCCTCCACTAACCAAACCCAATTCCCCCTAAAATTATACGAGCCC
**
14900663 ACTACCCACTACCCTCCACTAACCAAACCCAATTCCCCCTAAAATTATATTAGCCC
1 ACTACCCACTACCCTCCACTAACCAAACCCAATTCCCCCTAAAATTATACGAGCCC
14900719 ACTACCCA
1 ACTACCCA
14900727 TTACTTATTT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 39 0.66
56 20 0.34
ACGTcount: A:0.32, C:0.45, G:0.04, T:0.19
Consensus pattern (56 bp):
ACTACCCACTACCCTCCACTAACCAAACCCAATTCCCCCTAAAATTATACGAGCCC
Found at i:14900754 original size:8 final size:8
Alignment explanation
Indices: 14900735--14900779 Score: 51
Period size: 7 Copynumber: 5.9 Consensus size: 8
14900725 CATTACTTAT
14900735 TTACCCAC
1 TTACCCAC
14900743 -TACCCAC
1 TTACCCAC
14900750 TTACCCAC
1 TTACCCAC
*
14900758 -TAGCCCAT
1 TTA-CCCAC
14900766 TTACCCA-
1 TTACCCAC
14900773 TTACCCA
1 TTACCCA
14900780 ACAAAAAACC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
7 16 0.48
8 15 0.45
9 2 0.06
ACGTcount: A:0.27, C:0.47, G:0.02, T:0.24
Consensus pattern (8 bp):
TTACCCAC
Found at i:14900769 original size:16 final size:15
Alignment explanation
Indices: 14900733--14900779 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
14900723 CCCATTACTT
14900733 ATTTACCCACTACCC
1 ATTTACCCACTACCC
*
14900748 ACTTACCCACTAGCCC
1 ATTTACCCACTA-CCC
*
14900764 ATTTACCCATTACCC
1 ATTTACCCACTACCC
14900779 A
1 A
14900780 ACAAAAAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.28, C:0.45, G:0.02, T:0.26
Consensus pattern (15 bp):
ATTTACCCACTACCC
Found at i:14902320 original size:17 final size:18
Alignment explanation
Indices: 14902294--14902331 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14902284 TTTTCGTAAG
14902294 TTAGGTTTTTTTCTATGT
1 TTAGGTTTTTTTCTATGT
14902312 TTAGGTTTTTTTCTATGT
1 TTAGGTTTTTTTCTATGT
14902330 TT
1 TT
14902332 TGCTCAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.05, G:0.16, T:0.68
Consensus pattern (18 bp):
TTAGGTTTTTTTCTATGT
Found at i:14904685 original size:31 final size:31
Alignment explanation
Indices: 14904632--14904739 Score: 119
Period size: 31 Copynumber: 3.5 Consensus size: 31
14904622 GACCCCATCA
* * * *
14904632 CATTGCACTTTGGGTTGGCAATGTACATCCC
1 CATTGCACCTTAGGCTGGCAATGTATATCCC
* * *
14904663 CATTACACCTT-GAGCTGGCAATGTATAACCT
1 CATTGCACCTTAG-GCTGGCAATGTATATCCC
*
14904694 CATTGCACCTTAGGCTGGCAACGTATATCCC
1 CATTGCACCTTAGGCTGGCAATGTATATCCC
*
14904725 TATTGCACCTTAGGC
1 CATTGCACCTTAGGC
14904740 ATTTTATAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
30 1 0.02
31 62 0.97
32 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (31 bp):
CATTGCACCTTAGGCTGGCAATGTATATCCC
Found at i:14905035 original size:68 final size:68
Alignment explanation
Indices: 14904878--14905192 Score: 313
Period size: 68 Copynumber: 4.7 Consensus size: 68
14904868 ATCTCATAAG
* * *
14904878 GTATATGGAATTTACATCATATACATAATCTCATGGCATT--T-ATG-TTAGCTCAATCATCTCA
1 GTATATGGAATATACATCATATACATATTCTCATGGCATTAATCATGCATA-CTCAATCATCTCA
14904939 TGTA
65 TGTA
* * *
14904943 GTATATGGAATATACATCATATACATATTCTCATGGCATTAATCATGCATACTTAATCATTTCGT
1 GTATATGGAATATACATCATATACATATTCTCATGGCATTAATCATGCATACTCAATCATCTCAT
14905008 GTA
66 GTA
* * * *
14905011 GTATATGGAATATATATCACATACATATTCTCATGGCATTAATCATGCATACTGAATCACCTCAT
1 GTATATGGAATATACATCATATACATATTCTCATGGCATTAATCATGCATACTCAATCATCTCAT
* *
14905076 ATG
66 GTA
* * * * * ** *
14905079 GTATATGGAATTTACATCATATACACCA-TCTTATAGTA-TACATCATGCATACTTGATCATCTT
1 GTATATGGAATATACATCATATACA-TATTCTCATGGCATTA-ATCATGCATACTCAATCATCTC
* *
14905142 ATATG
64 ATGTA
* *
14905147 GTATATGGAAT-TCACATCATATACATAGTC-CTATGGCATTCATCAT
1 GTATATGGAATAT-ACATCATATACATATTCTC-ATGGCATTAATCAT
14905193 ACCAACATGT
Statistics
Matches: 210, Mismatches: 30, Indels: 17
0.82 0.12 0.07
Matches are distributed among these distances:
65 38 0.18
67 5 0.02
68 163 0.78
69 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.37
Consensus pattern (68 bp):
GTATATGGAATATACATCATATACATATTCTCATGGCATTAATCATGCATACTCAATCATCTCAT
GTA
Found at i:14906401 original size:16 final size:17
Alignment explanation
Indices: 14906374--14906411 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
14906364 GGATTTAATA
14906374 AAAATATCAAAAAAATC
1 AAAATATCAAAAAAATC
* *
14906391 AAAAT-TCAAAAGAATG
1 AAAATATCAAAAAAATC
14906407 AAAAT
1 AAAAT
14906412 CTAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.68, C:0.08, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAATATCAAAAAAATC
Found at i:14907007 original size:13 final size:13
Alignment explanation
Indices: 14906989--14907014 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14906979 CCAGAAATAG
14906989 AATCAACTTAGTC
1 AATCAACTTAGTC
14907002 AATCAACTTAGTC
1 AATCAACTTAGTC
14907015 GACTAAGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
AATCAACTTAGTC
Found at i:14909216 original size:32 final size:32
Alignment explanation
Indices: 14909175--14909238 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
14909165 AACTAAGAAA
14909175 GTTCAAATAAACTTTAAGGCCATCAACACATT
1 GTTCAAATAAACTTTAAGGCCATCAACACATT
14909207 GTTCAAATAAACTTTAAGGCCATCAACACATT
1 GTTCAAATAAACTTTAAGGCCATCAACACATT
14909239 ACATTGTGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (32 bp):
GTTCAAATAAACTTTAAGGCCATCAACACATT
Found at i:14921741 original size:19 final size:20
Alignment explanation
Indices: 14921714--14921759 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14921704 AAGAGACAAG
*
14921714 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
14921733 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
14921752 ATAATATT
1 ATAATATT
14921760 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:14922006 original size:19 final size:20
Alignment explanation
Indices: 14921979--14922018 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14921969 GCATCGAACT
*
14921979 AGATCAAATAGAGAAT-TTA
1 AGATCAAATAAAGAATATTA
*
14921998 AGATGAAATAAAGAATATTA
1 AGATCAAATAAAGAATATTA
14922018 A
1 A
14922019 AGTCCCAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (20 bp):
AGATCAAATAAAGAATATTA
Found at i:14922191 original size:19 final size:19
Alignment explanation
Indices: 14922167--14922204 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14922157 GTATTTGACT
14922167 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
14922186 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
14922205 GTTAAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:14924951 original size:5 final size:5
Alignment explanation
Indices: 14924941--14924975 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
14924931 CCCCAAGTCC
*
14924941 AGTTA AGTTA AGATA AGTTA AGTTA AGTTA AGTTA
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA
14924976 GGCTAGATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (5 bp):
AGTTA
Found at i:14927010 original size:14 final size:15
Alignment explanation
Indices: 14926985--14927013 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14926975 TTTGGAGATA
14926985 AGTTGAAGCATGCAT
1 AGTTGAAGCATGCAT
14927000 AGTTG-AGCATGCAT
1 AGTTGAAGCATGCAT
14927014 GTAGATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
AGTTGAAGCATGCAT
Found at i:14937325 original size:18 final size:19
Alignment explanation
Indices: 14937302--14937339 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14937292 AATGTTCAAA
* *
14937302 TAAAAACTT-AAATTATTT
1 TAAAAAATTCAAATAATTT
14937320 TAAAAAATTCAAATAATTT
1 TAAAAAATTCAAATAATTT
14937339 T
1 T
14937340 TTATTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAAAATTCAAATAATTT
Found at i:14937602 original size:33 final size:33
Alignment explanation
Indices: 14937539--14937603 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
14937529 ATTAGTATGT
*
14937539 TACGTCATCATCAATTATGATATATCAACATAG
1 TACGTCATCATCAATTATGATACATCAACATAG
* * *
14937572 TACGTCATTATCAATTATGATACGTTAACATA
1 TACGTCATCATCAATTATGATACATCAACATA
14937604 TCTTAATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.35
Consensus pattern (33 bp):
TACGTCATCATCAATTATGATACATCAACATAG
Found at i:14945778 original size:28 final size:28
Alignment explanation
Indices: 14945746--14945840 Score: 111
Period size: 28 Copynumber: 3.2 Consensus size: 28
14945736 ATAATGCTTT
14945746 CAAATTACTCATTTCCCTTAATGTTGTA
1 CAAATTACTCATTTCCCTTAATGTTGTA
* * *
14945774 CAAATTAACTAACATTT-TCTTAATGGTTTTTT
1 CAAATT-ACT--CATTTCCCTTAAT-G-TTGTA
14945806 CAAATTACTCATTTCCCTTAATGTTGTA
1 CAAATTACTCATTTCCCTTAATGTTGTA
14945834 CAAATTA
1 CAAATTA
14945841 ACTAACATTT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
28 16 0.29
29 9 0.16
30 12 0.22
31 9 0.16
32 9 0.16
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (28 bp):
CAAATTACTCATTTCCCTTAATGTTGTA
Found at i:14945798 original size:30 final size:30
Alignment explanation
Indices: 14945762--14945858 Score: 119
Period size: 30 Copynumber: 3.2 Consensus size: 30
14945752 ACTCATTTCC
14945762 CTTAATGTTGTACAAATTAACTAACATTTT
1 CTTAATGTTGTACAAATTAACTAACATTTT
* * *
14945792 CTTAATGGTTTTTTCAAATT-ACT--CATTTCC
1 CTTAAT-G-TTGTACAAATTAACTAACATTT-T
14945822 CTTAATGTTGTACAAATTAACTAACATTTT
1 CTTAATGTTGTACAAATTAACTAACATTTT
14945852 CTTAATG
1 CTTAATG
14945859 GTTTTTTCTA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
28 9 0.16
29 9 0.16
30 19 0.35
31 9 0.16
32 9 0.16
ACGTcount: A:0.32, C:0.15, G:0.07, T:0.45
Consensus pattern (30 bp):
CTTAATGTTGTACAAATTAACTAACATTTT
Found at i:14945812 original size:60 final size:60
Alignment explanation
Indices: 14945743--14945866 Score: 248
Period size: 60 Copynumber: 2.1 Consensus size: 60
14945733 TGTATAATGC
14945743 TTTCAAATTACTCATTTCCCTTAATGTTGTACAAATTAACTAACATTTTCTTAATGGTTT
1 TTTCAAATTACTCATTTCCCTTAATGTTGTACAAATTAACTAACATTTTCTTAATGGTTT
14945803 TTTCAAATTACTCATTTCCCTTAATGTTGTACAAATTAACTAACATTTTCTTAATGGTTT
1 TTTCAAATTACTCATTTCCCTTAATGTTGTACAAATTAACTAACATTTTCTTAATGGTTT
14945863 TTTC
1 TTTC
14945867 TACTATAGAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 64 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (60 bp):
TTTCAAATTACTCATTTCCCTTAATGTTGTACAAATTAACTAACATTTTCTTAATGGTTT
Found at i:14951016 original size:21 final size:21
Alignment explanation
Indices: 14950990--14951057 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 21
14950980 ATTCATGTAA
*
14950990 TTCATGACAAAGATTGATGCC
1 TTCATGACAAAGACTGATGCC
* *
14951011 TTCATGACAAAGACAGATGTC
1 TTCATGACAAAGACTGATGCC
14951032 TTCATGACAAAGACTGATGCC
1 TTCATGACAAAGACTGATGCC
*
14951053 ATCAT
1 TTCAT
14951058 TCAAAGTCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (21 bp):
TTCATGACAAAGACTGATGCC
Found at i:14952130 original size:63 final size:64
Alignment explanation
Indices: 14952031--14952160 Score: 244
Period size: 63 Copynumber: 2.0 Consensus size: 64
14952021 ACTATATCTT
*
14952031 TTACTTTGAATTATTCTGAATATCTAAAGAGGGTTTATATTGATGTAAATTGCAAAACCCGA-C
1 TTACTTTGAATTATTCTGAATATCTAAAGAGGGTTTATATTGATGTAAATTACAAAACCCGATC
14952094 TTACTTTGAATTATTCTGAATATCTAAAGAGGGTTTATATTGATGTAAATTACAAAACCCGATC
1 TTACTTTGAATTATTCTGAATATCTAAAGAGGGTTTATATTGATGTAAATTACAAAACCCGATC
14952158 TTA
1 TTA
14952161 TAAACACATG
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
63 61 0.94
64 4 0.06
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (64 bp):
TTACTTTGAATTATTCTGAATATCTAAAGAGGGTTTATATTGATGTAAATTACAAAACCCGATC
Found at i:14962992 original size:14 final size:16
Alignment explanation
Indices: 14962973--14963005 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
14962963 TGGGGGTGTG
14962973 AAATTATG-A-AAAAA
1 AAATTATGTAGAAAAA
14962987 AAATTATGTAGAAAAA
1 AAATTATGTAGAAAAA
14963003 AAA
1 AAA
14963006 AGTTCAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 1 0.06
16 8 0.47
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (16 bp):
AAATTATGTAGAAAAA
Found at i:14964204 original size:13 final size:13
Alignment explanation
Indices: 14964186--14964210 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14964176 ATTCTTGAGT
14964186 TTATTCTTTTATA
1 TTATTCTTTTATA
14964199 TTATTCTTTTAT
1 TTATTCTTTTAT
14964211 TTTCTTAGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTCTTTTATA
Found at i:14981093 original size:2 final size:2
Alignment explanation
Indices: 14981086--14981118 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14981076 ACTTTCTATA
14981086 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
14981119 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:14981218 original size:43 final size:43
Alignment explanation
Indices: 14981158--14981293 Score: 204
Period size: 43 Copynumber: 3.2 Consensus size: 43
14981148 ACCATCCCAC
*
14981158 CATCATCAGCTCATGTGCACTCCCCACTCGCACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCCCACTCGCACATAGCTGGGT
* **
14981201 CATCATCAGCTCATGTGCACTCCCACACT-GGACATAGCTAAGT
1 CATCATCAGCTCATGTGCACTCCC-CACTCGCACATAGCTGGGT
*
14981244 CATCATCAGCTCATGTGCACT-CCCACACGCACATAGCTGGGT
1 CATCATCAGCTCATGTGCACTCCCCACTCGCACATAGCTGGGT
14981286 CATCATCA
1 CATCATCA
14981294 TCACACAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
41 3 0.04
42 21 0.25
43 55 0.66
44 4 0.05
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.24
Consensus pattern (43 bp):
CATCATCAGCTCATGTGCACTCCCCACTCGCACATAGCTGGGT
Found at i:14981407 original size:17 final size:17
Alignment explanation
Indices: 14981385--14981419 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14981375 TCATAAGATA
14981385 GAAACTTTTCACCAAAG
1 GAAACTTTTCACCAAAG
14981402 GAAACTTTTCACCAAAG
1 GAAACTTTTCACCAAAG
14981419 G
1 G
14981420 CTTTTTCCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (17 bp):
GAAACTTTTCACCAAAG
Found at i:14983343 original size:2 final size:2
Alignment explanation
Indices: 14983336--14983372 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
14983326 TTTGATGTTG
*
14983336 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14983373 CTATGTCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14983557 original size:54 final size:54
Alignment explanation
Indices: 14983478--14983690 Score: 318
Period size: 54 Copynumber: 3.9 Consensus size: 54
14983468 ATGGTGATAC
* * *
14983478 TGTCTGGCTATGTGCACGATGTGGTGGGATGTACATGAGTTGGGTGAGATGGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
* *
14983532 TGTCCGGCTATGTGCACAATATGGTGGGATGCACATGAGCTGGGTGAGATGGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
* * * *
14983586 TGTCTGGCTATGTGCATGATGTGGTGGGATGCACATGAGTTGGGTGAGATGAGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
* * *
14983640 TGTCCGACTATGTGCACGATGTGGTGGGATGCAAATGAGCTAGGTGAGATG
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATG
14983691 CACAAGATGA
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 142 1.00
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.27
Consensus pattern (54 bp):
TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
Found at i:14983623 original size:108 final size:108
Alignment explanation
Indices: 14983478--14983690 Score: 354
Period size: 108 Copynumber: 2.0 Consensus size: 108
14983468 ATGGTGATAC
* * *
14983478 TGTCTGGCTATGTGCACGATGTGGTGGGATGTACATGAGTTGGGTGAGATGGGATGTCCGGCTAT
1 TGTCTGGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGAGATGTCCGACTAT
* *
14983543 GTGCACAATATGGTGGGATGCACATGAGCTGGGTGAGATGGGA
66 GTGCACAATATGGTGGGATGCAAATGAGCTAGGTGAGATGGGA
*
14983586 TGTCTGGCTATGTGCATGATGTGGTGGGATGCACATGAGTTGGGTGAGATGAGATGTCCGACTAT
1 TGTCTGGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGAGATGTCCGACTAT
* *
14983651 GTGCACGATGTGGTGGGATGCAAATGAGCTAGGTGAGATG
66 GTGCACAATATGGTGGGATGCAAATGAGCTAGGTGAGATG
14983691 CACAAGATGA
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 97 1.00
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.27
Consensus pattern (108 bp):
TGTCTGGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGAGATGTCCGACTAT
GTGCACAATATGGTGGGATGCAAATGAGCTAGGTGAGATGGGA
Found at i:14990245 original size:3 final size:3
Alignment explanation
Indices: 14990237--14990270 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
14990227 ATTTTTAGCA
* *
14990237 CTT CTT CTT ATT CTT ATT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
14990271 CTTTCTCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:14993504 original size:2 final size:2
Alignment explanation
Indices: 14993497--14993528 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14993487 TTCTTTAAAC
14993497 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14993529 GTGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14993533 original size:2 final size:2
Alignment explanation
Indices: 14993528--14993574 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
14993518 TATATATATA
14993528 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14993569 TG TG TG
1 TG TG TG
14993575 ATATTGTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:14997241 original size:18 final size:18
Alignment explanation
Indices: 14997218--14997252 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14997208 ATTGCAGAAT
*
14997218 GTTTTGAAGAGTTCAATA
1 GTTTTGAAAAGTTCAATA
14997236 GTTTTGAAAAGTTCAAT
1 GTTTTGAAAAGTTCAAT
14997253 GTTACTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (18 bp):
GTTTTGAAAAGTTCAATA
Found at i:14998544 original size:33 final size:33
Alignment explanation
Indices: 14998507--14998597 Score: 128
Period size: 33 Copynumber: 2.8 Consensus size: 33
14998497 TTACACTTGC
* * *
14998507 TTTTCAAGGATCAAATCGAACCTATCACATGCT
1 TTTTCAAGGATCAAGTAGAACCTATCACATGCA
* *
14998540 TTTTCAAGGATCAAGTAGAACTTATCACTTGCA
1 TTTTCAAGGATCAAGTAGAACCTATCACATGCA
*
14998573 TTTTGAAGGATCAAGTAGAACCTAT
1 TTTTCAAGGATCAAGTAGAACCTAT
14998598 ACAACTACCT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (33 bp):
TTTTCAAGGATCAAGTAGAACCTATCACATGCA
Found at i:15012036 original size:7 final size:7
Alignment explanation
Indices: 15012002--15012038 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
15011992 TCATTTACCC
*
15012002 TGCTGCC
1 TGCTGCT
*
15012009 TGCTGCC
1 TGCTGCT
15012016 TGCTGCT
1 TGCTGCT
15012023 TGCTGCT
1 TGCTGCT
15012030 TGCTGCT
1 TGCTGCT
15012037 TG
1 TG
15012039 TACCAATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.00, C:0.32, G:0.30, T:0.38
Consensus pattern (7 bp):
TGCTGCT
Found at i:15012357 original size:21 final size:22
Alignment explanation
Indices: 15012332--15012373 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
15012322 CCTAATCTAA
15012332 AGGGG-GAAAAAGAACAAAAAG
1 AGGGGAGAAAAAGAACAAAAAG
*
15012353 AGGGGAGAAAAAGAAGAAAAA
1 AGGGGAGAAAAAGAACAAAAA
15012374 CAACAACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.64, C:0.02, G:0.33, T:0.00
Consensus pattern (22 bp):
AGGGGAGAAAAAGAACAAAAAG
Found at i:15024736 original size:14 final size:15
Alignment explanation
Indices: 15024712--15024740 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15024702 AAGGGAATTG
15024712 GGAACTGTGGAATGT
1 GGAACTGTGGAATGT
15024727 GGAA-TGTGGAATGT
1 GGAACTGTGGAATGT
15024741 TTTTCTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.03, G:0.41, T:0.28
Consensus pattern (15 bp):
GGAACTGTGGAATGT
Found at i:15025279 original size:30 final size:29
Alignment explanation
Indices: 15025239--15025297 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
15025229 ATATTACAAG
*
15025239 AACTTTTTTGACTCAAAATAAAAATATAAA
1 AACTTATTTGACTCAAAAT-AAAATATAAA
* *
15025269 AACTTATTTGATTTAAAATAAAATATAAA
1 AACTTATTTGACTCAAAATAAAATATAAA
15025298 GATTTGATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.54, C:0.07, G:0.03, T:0.36
Consensus pattern (29 bp):
AACTTATTTGACTCAAAATAAAATATAAA
Found at i:15025308 original size:29 final size:29
Alignment explanation
Indices: 15025253--15025335 Score: 89
Period size: 29 Copynumber: 2.9 Consensus size: 29
15025243 TTTTTGACTC
* * *
15025253 AAAATAAAAATATAAAAACTTATTTGATTT
1 AAAATAAAAATATAAAGATTTATTTGA-AT
15025283 AAAAT-AAAATATAAAGATTTGA-TTGAAT
1 AAAATAAAAATATAAAGATTT-ATTTGAAT
* *
15025311 ACAATAAAAATATCAAGATTTATTT
1 AAAATAAAAATATAAAGATTTATTT
15025336 AAATTTTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 6 0.13
29 33 0.73
30 6 0.13
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (29 bp):
AAAATAAAAATATAAAGATTTATTTGAAT
Found at i:15039368 original size:28 final size:29
Alignment explanation
Indices: 15039327--15039386 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
15039317 GTCTATGGGC
*
15039327 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
15039355 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
15039385 AA
1 AA
15039387 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:15041632 original size:47 final size:47
Alignment explanation
Indices: 15041562--15041882 Score: 369
Period size: 47 Copynumber: 6.8 Consensus size: 47
15041552 TGTGACACGA
* * *
15041562 CTGTGACATGCCAGCAG-TCAGAGTTGGTGAGACGCCATGGAGGGAAT
1 CTGTGACACGCCAG-AGTTCAAAGTTGGTGACACGCCATGGAGGGAAT
* *
15041609 CTGTGACACGTCAGAGTT-AAGAGTTGGTGACACGCCATGGTGGGAAT
1 CTGTGACACGCCAGAGTTCAA-AGTTGGTGACACGCCATGGAGGGAAT
* * * * * *
15041656 CTATGACACACTAGTGTTCAAAGTTGGTGAGATGCCATGGAGGGAAT
1 CTGTGACACGCCAGAGTTCAAAGTTGGTGACACGCCATGGAGGGAAT
* * **
15041703 CTGTGACATGCCAGAGTTTAAAGTTGGTGACACGGTATGGAGGGAAT
1 CTGTGACACGCCAGAGTTCAAAGTTGGTGACACGCCATGGAGGGAAT
* * * *
15041750 CTGTGACACGCAAGCGTTCAAAGTTGGTGATACCCCATGGAGGGAAT
1 CTGTGACACGCCAGAGTTCAAAGTTGGTGACACGCCATGGAGGGAAT
* *
15041797 CTGTGACACGTCAGAGTTCAAAGCTGGTGACACGCCATGGAGGGAAGT
1 CTGTGACACGCCAGAGTTCAAAGTTGGTGACACGCCATGGAGGGAA-T
* * * *
15041845 -TGTGACAAGCCAGAGTTCAGAGTTGGTGGCATGCCATG
1 CTGTGACACGCCAGAGTTCAAAGTTGGTGACACGCCATG
15041883 TTTAGAGTGT
Statistics
Matches: 227, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
46 3 0.01
47 221 0.97
48 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (47 bp):
CTGTGACACGCCAGAGTTCAAAGTTGGTGACACGCCATGGAGGGAAT
Found at i:15041960 original size:29 final size:29
Alignment explanation
Indices: 15041927--15041986 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
15041917 TGACACGCCA
15041927 TGGTTTAGAGTGTGTGACACGACATTACT
1 TGGTTTAGAGTGTGTGACACGACATTACT
*
15041956 TGGTTTAGAGTGTGTGACACGACATTGCT
1 TGGTTTAGAGTGTGTGACACGACATTACT
15041985 TG
1 TG
15041987 AACAGTTGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.13, G:0.30, T:0.35
Consensus pattern (29 bp):
TGGTTTAGAGTGTGTGACACGACATTACT
Done.