Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 43 of 59
Found at i:15425830 original size:2 final size:2
Alignment explanation
Indices: 15425823--15425849 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15425813 TTAAGCGATT
15425823 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
15425850 GTGTGTGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:15442048 original size:19 final size:20
Alignment explanation
Indices: 15442019--15442058 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
15442009 TCACTTCTAA
15442019 ACTTCAAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
*
15442039 ACTT-AAATCATACTCTAAT
1 ACTTCAAATCATACTCCAAT
15442058 A
1 A
15442059 AGTCAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (20 bp):
ACTTCAAATCATACTCCAAT
Found at i:15444029 original size:18 final size:18
Alignment explanation
Indices: 15444006--15444040 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
15443996 TTACAATAAT
15444006 TATTGTAATGAAAATTAG
1 TATTGTAATGAAAATTAG
15444024 TATTGTAATGAAAATTA
1 TATTGTAATGAAAATTA
15444041 CAGAAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.40
Consensus pattern (18 bp):
TATTGTAATGAAAATTAG
Found at i:15444240 original size:4 final size:4
Alignment explanation
Indices: 15444231--15444260 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
15444221 CTATATGAAG
15444231 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
15444261 AGATGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:15455426 original size:15 final size:15
Alignment explanation
Indices: 15455377--15455427 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
15455367 TTAAAAGATC
15455377 AAAGATTTT-GATTTT
1 AAAG-TTTTGGATTTT
*
15455392 AAAGCTTTGGATTTT
1 AAAGTTTTGGATTTT
15455407 AAAGTTTTCGG-TTTT
1 AAAGTTTT-GGATTTT
15455422 AAAGTT
1 AAAGTT
15455428 GTTTTAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 3 0.09
15 27 0.84
16 2 0.06
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (15 bp):
AAAGTTTTGGATTTT
Found at i:15460969 original size:22 final size:21
Alignment explanation
Indices: 15460943--15461002 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
15460933 AAAATATCCT
15460943 TTATAAGTTTAAAAATTACATA
1 TTATAAGTTTAAAAATTA-ATA
*
15460965 TTATAAGTTATAAAAAATAATA
1 TTATAAGTT-TAAAAATTAATA
*
15460987 TT-TCAAATTTAAAAAT
1 TTAT-AAGTTTAAAAAT
15461003 AAATTAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 7 0.21
22 18 0.55
23 8 0.24
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
TTATAAGTTTAAAAATTAATA
Found at i:15461131 original size:42 final size:42
Alignment explanation
Indices: 15461039--15461131 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
15461029 ATAATAACAT
* *
15461039 TTAAATTATAAATAAAATATGAATATTTTAAAATGTTAATGA
1 TTAAATTATAAATAAAATATGAATATTTTAAAATATCAATGA
* * * *
15461081 TTAAATTATAAATAAAATATTAAT-TTTTAAATTATCGATTA
1 TTAAATTATAAATAAAATATGAATATTTTAAAATATCAATGA
15461122 TTAATATTAT
1 TTAA-ATTAT
15461132 TATAAAAAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
41 16 0.36
42 28 0.64
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (42 bp):
TTAAATTATAAATAAAATATGAATATTTTAAAATATCAATGA
Found at i:15461208 original size:11 final size:11
Alignment explanation
Indices: 15461192--15461216 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15461182 TATCTTAATT
15461192 TTAAAAATTAA
1 TTAAAAATTAA
15461203 TTAAAAATTAA
1 TTAAAAATTAA
15461214 TTA
1 TTA
15461217 TATTTTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
TTAAAAATTAA
Found at i:15461333 original size:42 final size:42
Alignment explanation
Indices: 15461237--15461352 Score: 196
Period size: 42 Copynumber: 2.7 Consensus size: 42
15461227 ATAATAACAT
15461237 TTCAATTATAAATAAAATATTAATATTTTAAAAATGTTAATGA
1 TTCAATTATAAATAAAATATTAATATTTT-AAAATGTTAATGA
* * *
15461280 TTAAATCATAAATAAAATATTAATATATTAAAATGTTAATGA
1 TTCAATTATAAATAAAATATTAATATTTTAAAATGTTAATGA
15461322 TTCAATTATAAATAAAATATTAATATTTTAA
1 TTCAATTATAAATAAAATATTAATATTTTAA
15461353 CTATAAATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 41 0.61
43 26 0.39
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (42 bp):
TTCAATTATAAATAAAATATTAATATTTTAAAATGTTAATGA
Found at i:15461373 original size:241 final size:234
Alignment explanation
Indices: 15461039--15461489 Score: 638
Period size: 241 Copynumber: 1.9 Consensus size: 234
15461029 ATAATAACAT
* *
15461039 TTAAATTATAAATAAAATATGAATATTTTAAAATGTTAATGATTAAATTATAAATAAAATATTAA
1 TTAAATCATAAATAAAATATGAATATATTAAAATGTTAATGATTAAATTATAAATAAAATATTAA
* ** *
15461104 TTTTTAAATTATCGATTATTAATATTATTATAAAAAAGAAAAAAAAATTAAAAT-TTTAATTAAA
66 TTTTTAAACTATAAATTATTAATATTATTAT----AA-AAAAAAAAATTAAAATATTTAACTAAA
*
15461168 TATTATAAAAATAATATCTTAATTTTAAAAATTAATTAAAAATTAATT-ATATTTTAATCATAAT
126 TATTATAAAAAT-AT-TCTTAAATTTAAAAATTAATT-AAAATT-ATTAATATTTTAATCATAAT
*
15461232 AACATTTCAATTATAAATAAAATATTAATATTTTAAAAATGTTAATGA
187 AACATTTAAATTATAAATAAAATATTAATATTTTAAAAATGTTAATGA
* *
15461280 TTAAATCATAAATAAAATATTAATATATTAAAATGTTAATGATTCAATTATAAATAAAATATTAA
1 TTAAATCATAAATAAAATATGAATATATTAAAATGTTAATGATTAAATTATAAATAAAATATTAA
* * * *
15461345 TATTTT-AACTATAAATTATTAATATTATTATAAAATAAAAAGTTTAAATATTTAACTATATATT
66 T-TTTTAAACTATAAATTATTAATATTATTATAAAAAAAAAAATTAAAATATTTAACTAAATATT
* * *
15461409 ATAAAAATATTTTTAAATTTAAAAATTGATTAAAATTATTAATATTTTAATCATAATATCATTTA
130 ATAAAAATATTCTTAAATTTAAAAATTAATTAAAATTATTAATATTTTAATCATAATAACATTTA
15461474 AATTATAAATAAAATA
195 AATTATAAATAAAATA
15461490 NNNNNNNNNN
Statistics
Matches: 190, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
233 3 0.02
234 44 0.23
235 18 0.09
236 15 0.08
237 22 0.12
241 84 0.44
242 4 0.02
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (234 bp):
TTAAATCATAAATAAAATATGAATATATTAAAATGTTAATGATTAAATTATAAATAAAATATTAA
TTTTTAAACTATAAATTATTAATATTATTATAAAAAAAAAAATTAAAATATTTAACTAAATATTA
TAAAAATATTCTTAAATTTAAAAATTAATTAAAATTATTAATATTTTAATCATAATAACATTTAA
ATTATAAATAAAATATTAATATTTTAAAAATGTTAATGA
Found at i:15470506 original size:22 final size:22
Alignment explanation
Indices: 15470480--15470521 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15470470 CCTTTATAAA
* * *
15470480 TAAAATATAAATTATTAATATT
1 TAAAAAATAAAATAATAATATT
15470502 TAAAAAATAAAATAATAATA
1 TAAAAAATAAAATAATAATA
15470522 AATAATCATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
TAAAAAATAAAATAATAATATT
Found at i:15470806 original size:15 final size:15
Alignment explanation
Indices: 15470775--15470822 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
15470765 ATTATAAATT
15470775 AAATATTAATATTTTA
1 AAATATTAATA-TTTA
15470791 AAATATTAATGA-TTA
1 AAATATTAAT-ATTTA
*
15470806 AAATATAAATATTTA
1 AAATATTAATATTTA
15470821 AA
1 AA
15470823 TGATCCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.03
15 17 0.59
16 10 0.34
17 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
AAATATTAATATTTA
Found at i:15475442 original size:6 final size:6
Alignment explanation
Indices: 15475431--15475457 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15475421 ATTATCTTTT
15475431 CATTGG CATTGG CATTGG CATTGG CAT
1 CATTGG CATTGG CATTGG CATTGG CAT
15475458 GAAATTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.33
Consensus pattern (6 bp):
CATTGG
Found at i:15490805 original size:51 final size:51
Alignment explanation
Indices: 15490729--15490831 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
15490719 CATTTTCCAC
15490729 CATCACAAGCACAGGCAATGGCATCTTTGGAGATACAACTGCAACTAAAGG
1 CATCACAAGCACAGGCAATGGCATCTTTGGAGATACAACTGCAACTAAAGG
15490780 CATCACAAGCACAGGCAATGGCATCTTTGGAGATACAACTGCAACTAAAGG
1 CATCACAAGCACAGGCAATGGCATCTTTGGAGATACAACTGCAACTAAAGG
15490831 C
1 C
15490832 CCAGGCAGTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.17
Consensus pattern (51 bp):
CATCACAAGCACAGGCAATGGCATCTTTGGAGATACAACTGCAACTAAAGG
Found at i:15497388 original size:23 final size:23
Alignment explanation
Indices: 15497343--15497392 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
15497333 TGGTTTCTTA
* *
15497343 TTTAAAAATTAAAATTTTAATTT
1 TTTAAAAATAAAAATATTAATTT
*
15497366 TTTAAAAATAAAAAATATTATTTT
1 TTTAAAAAT-AAAAATATTAATTT
15497390 TTT
1 TTT
15497393 GTTTATTCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAAAAATAAAAATATTAATTT
Found at i:15507505 original size:10 final size:10
Alignment explanation
Indices: 15507490--15507541 Score: 61
Period size: 10 Copynumber: 5.0 Consensus size: 10
15507480 CCTCACTAAA
15507490 CATCAAATAT
1 CATCAAATAT
15507500 CATCAAAATAT
1 CATC-AAATAT
*
15507511 CATGAAATAT
1 CATCAAATAT
15507521 CATCAAAT-T
1 CATCAAATAT
15507530 CAGTCACAATAT
1 CA-TCA-AATAT
15507542 TTTCCCTAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
9 3 0.08
10 20 0.56
11 12 0.33
12 1 0.03
ACGTcount: A:0.48, C:0.19, G:0.04, T:0.29
Consensus pattern (10 bp):
CATCAAATAT
Found at i:15514479 original size:23 final size:23
Alignment explanation
Indices: 15514423--15514485 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
15514413 TTTTACAAAG
* * *
15514423 TAAATGAAAATTTTATTTTTTAGT
1 TAAAT-AAAATCTAATTTTTTAAT
*
15514447 TAAATTAAATCTAATTTTTTAAT
1 TAAATAAAATCTAATTTTTTAAT
* *
15514470 TAACTAAAATTTAATT
1 TAAATAAAATCTAATT
15514486 AAATTAAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 27 0.84
24 5 0.16
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (23 bp):
TAAATAAAATCTAATTTTTTAAT
Found at i:15516695 original size:21 final size:21
Alignment explanation
Indices: 15516671--15516767 Score: 104
Period size: 21 Copynumber: 4.6 Consensus size: 21
15516661 CGTTCACGCC
*
15516671 TGGATACCACCTAAGTTCCCA
1 TGGAAACCACCTAAGTTCCCA
15516692 TGGAAACCACCTAAGTTCCCA
1 TGGAAACCACCTAAGTTCCCA
* * *
15516713 TGGAAACCACCTAGGTACCCC
1 TGGAAACCACCTAAGTTCCCA
** * * *
15516734 CAGAAACCACCTAGGTCCCCC
1 TGGAAACCACCTAAGTTCCCA
*
15516755 CGGAAACCACCTA
1 TGGAAACCACCTA
15516768 GGCGAAACTG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 68 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (21 bp):
TGGAAACCACCTAAGTTCCCA
Found at i:15526582 original size:15 final size:15
Alignment explanation
Indices: 15526562--15526595 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15526552 TAGATGTCAT
*
15526562 TTATGTTGAATTTTA
1 TTATGTTGAATTATA
*
15526577 TTATGTTTAATTATA
1 TTATGTTGAATTATA
15526592 TTAT
1 TTAT
15526596 TAACTTGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (15 bp):
TTATGTTGAATTATA
Found at i:15529757 original size:13 final size:13
Alignment explanation
Indices: 15529739--15529763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15529729 TTTTAGAAAA
15529739 TTTATAAAATCAT
1 TTTATAAAATCAT
15529752 TTTATAAAATCA
1 TTTATAAAATCA
15529764 CAGTTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:15532563 original size:15 final size:15
Alignment explanation
Indices: 15532543--15532573 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15532533 ATTTAGTATC
15532543 AATAATAATCATAAT
1 AATAATAATCATAAT
15532558 AATAATAATCATAAT
1 AATAATAATCATAAT
15532573 A
1 A
15532574 TAGTCTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
AATAATAATCATAAT
Found at i:15533965 original size:27 final size:28
Alignment explanation
Indices: 15533929--15534038 Score: 118
Period size: 27 Copynumber: 4.0 Consensus size: 28
15533919 ACACATCCAC
* *
15533929 TTTTGTTGGGTAAAAATATCTATCCATT
1 TTTTGATGGGTAAAAATATCCATCCATT
* *
15533957 TTTTG-TGGGTAAAAATATCCATTCACT
1 TTTTGATGGGTAAAAATATCCATCCATT
* * * *
15533984 TATTG-TGGGTAAAAGTATCTATCCA-C
1 TTTTGATGGGTAAAAATATCCATCCATT
*
15534010 TTTTGATGGGTAAAAGTATCCATCCATT
1 TTTTGATGGGTAAAAATATCCATCCATT
15534038 T
1 T
15534039 CTAATGGTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.06
27 59 0.86
28 6 0.09
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (28 bp):
TTTTGATGGGTAAAAATATCCATCCATT
Found at i:15533993 original size:54 final size:54
Alignment explanation
Indices: 15533926--15534032 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 54
15533916 ATTACACATC
*
15533926 CACTTTTGTTGGGTAAAAATATCTATCCATTTTTTG-TGGGTAAAAATATCCATT
1 CACTTTTGTTGGGTAAAAATATCTATCCA-CTTTTGATGGGTAAAAATATCCATT
* *
15533980 CACTTATTG-TGGGTAAAAGTATCTATCCACTTTTGATGGGTAAAAGTATCCAT
1 CACTT-TTGTTGGGTAAAAATATCTATCCACTTTTGATGGGTAAAAATATCCAT
15534033 CCATTTCTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
53 5 0.10
54 40 0.83
55 3 0.06
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (54 bp):
CACTTTTGTTGGGTAAAAATATCTATCCACTTTTGATGGGTAAAAATATCCATT
Found at i:15534045 original size:27 final size:26
Alignment explanation
Indices: 15533922--15534067 Score: 114
Period size: 27 Copynumber: 5.4 Consensus size: 26
15533912 TTTCATTACA
*
15533922 CATCCACTTTTGT-TGGGTAAAAATATC
1 CATCCA-TTTT-TATGGGTAAAAGTATC
* * *
15533949 TATCCATTTTTTGTGGGTAAAAATATC
1 CATCCA-TTTTTATGGGTAAAAGTATC
* * *
15533976 CATTCACTTATTGTGGGTAAAAGTATC
1 CATCCA-TTTTTATGGGTAAAAGTATC
* *
15534003 TATCCACTTTTGATGGGTAAAAGTATC
1 CATCCA-TTTTTATGGGTAAAAGTATC
* *
15534030 CATCCATTTCTAATGGTTAAAAGTATC
1 CATCCATTT-TTATGGGTAAAAGTATC
* *
15534057 CAACCACTTTT
1 CATCCATTTTT
15534068 GGTTGATTAA
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 5 0.05
27 94 0.95
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (26 bp):
CATCCATTTTTATGGGTAAAAGTATC
Found at i:15534051 original size:54 final size:53
Alignment explanation
Indices: 15533935--15534068 Score: 151
Period size: 54 Copynumber: 2.5 Consensus size: 53
15533925 CCACTTTTGT
* * * **
15533935 TGGGTAAAAATATCTATCCATTTTTTGTGGGTAAAAATATCCATTCACTTATTG
1 TGGGTAAAAGTATCTATCCA-CTTTTGTGGGTAAAAATATCCATCCACTTATAA
* * *
15533989 TGGGTAAAAGTATCTATCCACTTTTGATGGGTAAAAGTATCCATCCATTTCTAA
1 TGGGTAAAAGTATCTATCCACTTTTG-TGGGTAAAAATATCCATCCACTTATAA
* * *
15534043 TGGTTAAAAGTATCCAACCACTTTTG
1 TGGGTAAAAGTATCTATCCACTTTTG
15534069 GTTGATTAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 5 0.07
54 63 0.93
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (53 bp):
TGGGTAAAAGTATCTATCCACTTTTGTGGGTAAAAATATCCATCCACTTATAA
Found at i:15534058 original size:81 final size:82
Alignment explanation
Indices: 15533923--15534111 Score: 211
Period size: 81 Copynumber: 2.3 Consensus size: 82
15533913 TTCATTACAC
* * * ** **
15533923 ATCCACTTTTGTTGGGTAAAAATATCTATCCATTTTTTGTGGGTAAAAATATCCATTCACTTATT
1 ATCCACTTTTGATGGGTAAAAATATCCATCCATTTCTAATGGGTAAAAATATCCAACCACTT-TT
*
15533988 -G-TGGGTAAAAGTATCT
65 GGTTGAGTAAAAGTATCT
* * *
15534004 ATCCACTTTTGATGGGTAAAAGTATCCATCCATTTCTAATGGTTAAAAGTATCCAACCACTTTTG
1 ATCCACTTTTGATGGGTAAAAATATCCATCCATTTCTAATGGGTAAAAATATCCAACCACTTTTG
* *
15534069 GTTGATTAAAAGTATGT
66 GTTGAGTAAAAGTATCT
* *
15534086 ATCCACTTTTGGTAGGTTAAAAATAT
1 ATCCACTTTTGAT-GGGTAAAAATAT
15534112 TCTTCTTATT
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
80 2 0.02
81 53 0.60
82 24 0.27
83 10 0.11
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (82 bp):
ATCCACTTTTGATGGGTAAAAATATCCATCCATTTCTAATGGGTAAAAATATCCAACCACTTTTG
GTTGAGTAAAAGTATCT
Found at i:15534091 original size:28 final size:28
Alignment explanation
Indices: 15534046--15534107 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
15534036 TTTCTAATGG
*
15534046 TTAAAAGTATCCAACCACTTTTGGTTGA
1 TTAAAAGTATCCAACCACTTTTGGTAGA
** * *
15534074 TTAAAAGTATGTATCCACTTTTGGTAGG
1 TTAAAAGTATCCAACCACTTTTGGTAGA
15534102 TTAAAA
1 TTAAAA
15534108 ATATTCTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (28 bp):
TTAAAAGTATCCAACCACTTTTGGTAGA
Found at i:15534436 original size:46 final size:47
Alignment explanation
Indices: 15534347--15534436 Score: 121
Period size: 46 Copynumber: 1.9 Consensus size: 47
15534337 TCACTTGTTA
* **
15534347 CAAAACAGATATTAAATCACTTACCTAGTTCGCTAAAGTGAAAACAC
1 CAAAACAGATATTAAATCACTTACCTAGTTCACTAAAAAGAAAACAC
*
15534394 CAAAA-AGATATTAAGTCACTTACCT-GATTCACTAAAAAGAAAA
1 CAAAACAGATATTAAATCACTTACCTAG-TTCACTAAAAAGAAAA
15534437 ATCAAAGACC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.03
46 32 0.84
47 5 0.13
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.23
Consensus pattern (47 bp):
CAAAACAGATATTAAATCACTTACCTAGTTCACTAAAAAGAAAACAC
Found at i:15535529 original size:42 final size:42
Alignment explanation
Indices: 15535482--15535578 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
15535472 TTAGATAAGC
* *
15535482 AATTAATTTAATAATTGAATATAATAAGTTACTTAATTACTT
1 AATTAATTTAATAATTGAAAATAATAAGTTACTTAATTAATT
* * *
15535524 AATTAA-TTACATAATTTAAAATAATTAGTTACTTAGTTAATT
1 AATTAATTTA-ATAATTGAAAATAATAAGTTACTTAATTAATT
*
15535566 ACTTAATTTAATA
1 AATTAATTTAATA
15535579 TAATTAGTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.06
42 41 0.87
43 3 0.06
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.45
Consensus pattern (42 bp):
AATTAATTTAATAATTGAAAATAATAAGTTACTTAATTAATT
Found at i:15535556 original size:34 final size:34
Alignment explanation
Indices: 15535518--15535586 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
15535508 AGTTACTTAA
15535518 TTACTTAATTAATTACATAATTTAAAATAATTAG
1 TTACTTAATTAATTACATAATTTAAAATAATTAG
* * *
15535552 TTACTTAGTTAATTACTTAATTTAATATAATTAG
1 TTACTTAATTAATTACATAATTTAAAATAATTAG
15535586 T
1 T
15535587 GAATTAGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (34 bp):
TTACTTAATTAATTACATAATTTAAAATAATTAG
Found at i:15535594 original size:34 final size:34
Alignment explanation
Indices: 15535526--15535595 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
15535516 AATTACTTAA
* *
15535526 TTAATTACATAATTTAAAATAATTAGTTACTTAG
1 TTAATTACATAATTTAAAATAATTAGTGAATTAG
* *
15535560 TTAATTACTTAATTTAATATAATTAGTGAATTAG
1 TTAATTACATAATTTAAAATAATTAGTGAATTAG
15535594 TT
1 TT
15535596 TGTCAAGCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.47
Consensus pattern (34 bp):
TTAATTACATAATTTAAAATAATTAGTGAATTAG
Found at i:15545297 original size:28 final size:28
Alignment explanation
Indices: 15545266--15545341 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
15545256 CTGGTGGTTA
*
15545266 AAAATTACAATTTTGCCCCTGAGGTGGC
1 AAAATTACAATTTTACCCCTGAGGTGGC
15545294 AAAATTACAATTTTACCCCTGAGGTGGC
1 AAAATTACAATTTTACCCCTGAGGTGGC
*
15545322 AAAATTACCATTTTACCCCT
1 AAAATTACAATTTTACCCCT
15545342 ATACTCCAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (28 bp):
AAAATTACAATTTTACCCCTGAGGTGGC
Found at i:15560132 original size:23 final size:24
Alignment explanation
Indices: 15560092--15560141 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
15560082 TTTTAAAAAG
* * *
15560092 TAAATTAAAATTTTATTTTTTAGT
1 TAAATTAAAATCTAATTTTTTAAT
15560116 TAAATT-AAATCTAATTTTTTAAT
1 TAAATTAAAATCTAATTTTTTAAT
15560139 TAA
1 TAA
15560142 CCAAACTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TAAATTAAAATCTAATTTTTTAAT
Found at i:15560181 original size:27 final size:27
Alignment explanation
Indices: 15560115--15560181 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
15560105 TATTTTTTAG
*
15560115 TTAAATTAAATCTAATTTTTTAATTAA
1 TTAAATTAAATTTAATTTTTTAATTAA
** *
15560142 CCAAACTTTAATTTAA-TTTTTAATTGAA
1 TTAAA-TTAAATTTAATTTTTTAATT-AA
15560170 TTAAATTAAATT
1 TTAAATTAAATT
15560182 ATCCAAATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.49
Consensus pattern (27 bp):
TTAAATTAAATTTAATTTTTTAATTAA
Found at i:15560611 original size:20 final size:20
Alignment explanation
Indices: 15560561--15560612 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
15560551 TTTATGTTTA
15560561 AATATTTATTTTAAGTTAAT
1 AATATTTATTTTAAGTTAAT
* * * *
15560581 AATGTTAATTTTATGTTATT
1 AATATTTATTTTAAGTTAAT
*
15560601 TATATTTATTTT
1 AATATTTATTTT
15560613 TATATTTTTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (20 bp):
AATATTTATTTTAAGTTAAT
Found at i:15564279 original size:52 final size:52
Alignment explanation
Indices: 15564216--15564365 Score: 239
Period size: 52 Copynumber: 2.9 Consensus size: 52
15564206 CACATGATGG
*
15564216 TGATAGTGGTGTGCTGTGTGAGTGCACACACTGATAATATATGCCATGTGCA
1 TGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGCA
* * **
15564268 TGATAATGGTGTGCTATGTGAGTGCACACACTGATGATATATGCCATGTGTG
1 TGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGCA
*
15564320 TGATAGTGGTGTG-TGTGTGAGTGCACACATTGATGATATATGCCAT
1 TGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCAT
15564366 TTGCGATGTG
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
51 31 0.34
52 59 0.66
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (52 bp):
TGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGCA
Found at i:15567056 original size:19 final size:20
Alignment explanation
Indices: 15567021--15567059 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
15567011 CTTTTGTCTC
15567021 TTCAAGAATGATGATTCGTT
1 TTCAAGAATGATGATTCGTT
*
15567041 TTCAAGAA-GTTGATTCGTT
1 TTCAAGAATGATGATTCGTT
15567060 ATAGCAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (20 bp):
TTCAAGAATGATGATTCGTT
Found at i:15569258 original size:2 final size:2
Alignment explanation
Indices: 15569251--15569283 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15569241 TTATTTATTG
15569251 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15569284 TTAAAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15589590 original size:24 final size:23
Alignment explanation
Indices: 15589549--15589594 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
15589539 GAAAAATCAA
*
15589549 TTTTCTTTCATTTTCTTTCTTTG
1 TTTTCTTTCATTTCCTTTCTTTG
*
15589572 TTTTCTTTTCCTTTCCTTTCTTT
1 TTTTC-TTTCATTTCCTTTCTTT
15589595 TCTTACTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTCTTTCATTTCCTTTCTTTG
Found at i:15589603 original size:24 final size:24
Alignment explanation
Indices: 15589554--15589604 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
15589544 ATCAATTTTC
* *
15589554 TTTCATTTTCTTTCTTTGTTTTCT
1 TTTCATTTCCTTTCTTTGTTTACT
*
15589578 TTTCCTTTCCTTTCTTT-TCTTACT
1 TTTCATTTCCTTTCTTTGT-TTACT
15589602 TTT
1 TTT
15589605 TTCTTCTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTCATTTCCTTTCTTTGTTTACT
Found at i:15590461 original size:55 final size:54
Alignment explanation
Indices: 15590355--15590596 Score: 325
Period size: 55 Copynumber: 4.5 Consensus size: 54
15590345 CAACCGCACG
*
15590355 GGTGTGGGAGTGCACATGCCAG-TGATGAC---GGG-G-TGATTCCAACTATGTGC
1 GGTGTGGGAGTGCACATG--AGCTGATGACGGTGGGTGATGATTCCAGCTATGTGC
15590405 GGTGTGGGAGTGCACATGAGCTGATGATCGGTGGGTGATGATTCCAGCTATGTGC
1 GGTGTGGGAGTGCACATGAGCTGATGA-CGGTGGGTGATGATTCCAGCTATGTGC
*
15590460 GGTGTGGGAGTGCACATGAACTGATGACTGGTGGGTGATGATTCCAGCTATGTGC
1 GGTGTGGGAGTGCACATGAGCTGATGAC-GGTGGGTGATGATTCCAGCTATGTGC
* * * * * *
15590515 AGTGTGGGAGTGCACATGAGTTGATGACCGTTGGATAATGATTCTAGCTATGTGC
1 GGTGTGGGAGTGCACATGAGCTGATGA-CGGTGGGTGATGATTCCAGCTATGTGC
15590570 GGTGTGGGAGTGCACATGAGCTGATGA
1 GGTGTGGGAGTGCACATGAGCTGATGA
15590597 GCCGATGGTT
Statistics
Matches: 172, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
48 2 0.01
49 6 0.03
50 19 0.11
53 3 0.02
54 2 0.01
55 139 0.81
56 1 0.01
ACGTcount: A:0.21, C:0.14, G:0.38, T:0.27
Consensus pattern (54 bp):
GGTGTGGGAGTGCACATGAGCTGATGACGGTGGGTGATGATTCCAGCTATGTGC
Found at i:15599835 original size:14 final size:15
Alignment explanation
Indices: 15599803--15599836 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15599793 CCTCTAAATC
*
15599803 TAAAAACATGAAGTT
1 TAAAAACATGAAGTA
15599818 TAAAAACATG-AGTA
1 TAAAAACATGAAGTA
15599832 TAAAA
1 TAAAA
15599837 CTCAGTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (15 bp):
TAAAAACATGAAGTA
Found at i:15600678 original size:42 final size:42
Alignment explanation
Indices: 15600606--15600731 Score: 189
Period size: 42 Copynumber: 3.0 Consensus size: 42
15600596 AGTTCATATG
15600606 CAACGGCTTATGCGCACTCCTACTCGCACATAGCCAGGTCAA
1 CAACGGCTTATGCGCACTCCTACTCGCACATAGCCAGGTCAA
* * * * *
15600648 CAACAGCTTATGCGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGCGCACTCCTACTCGCACATAGCCAGGTCAA
* *
15600690 CAATGGCTTATGCGCACTCCTACTCGCACATAGCCAAGTCAA
1 CAACGGCTTATGCGCACTCCTACTCGCACATAGCCAGGTCAA
15600732 TATCATTACA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (42 bp):
CAACGGCTTATGCGCACTCCTACTCGCACATAGCCAGGTCAA
Found at i:15601448 original size:19 final size:19
Alignment explanation
Indices: 15601407--15601448 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
15601397 GAAGAAGGAG
*
15601407 AAGAAGCTGCTGGAGAATG
1 AAGAAGCTGCTGGAGAATA
15601426 AAGAAGCTGCTGGAAGAA-A
1 AAGAAGCTGCTGG-AGAATA
15601445 AAGA
1 AAGA
15601449 TATTTATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.45, C:0.10, G:0.33, T:0.12
Consensus pattern (19 bp):
AAGAAGCTGCTGGAGAATA
Found at i:15610180 original size:34 final size:34
Alignment explanation
Indices: 15610087--15610167 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
15610077 ACCTCAATGG
* ** *
15610087 CAGATGTTATACATTAAGGTCAAAGCTTCAATAC
1 CAGATGTTACACGCTAAAGTCAAAGCTTCAATAC
* * *
15610121 CAGATGTTACATGCTAAAGTCAAAGCTTTAATGC
1 CAGATGTTACACGCTAAAGTCAAAGCTTCAATAC
*
15610155 TAGATGTTACACG
1 CAGATGTTACACG
15610168 TCAAAGCTAA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (34 bp):
CAGATGTTACACGCTAAAGTCAAAGCTTCAATAC
Found at i:15610248 original size:34 final size:34
Alignment explanation
Indices: 15610196--15610261 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
15610186 ATGTTACACA
* *
15610196 CCAAAGTTTTAGCTCCAGATGTTACACACCAAGG
1 CCAAAGTTTCAGCACCAGATGTTACACACCAAGG
*
15610230 CCAAAGTTTCAGCACCAGATGTTACACGCCAA
1 CCAAAGTTTCAGCACCAGATGTTACACACCAA
15610262 AGCTTCCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (34 bp):
CCAAAGTTTCAGCACCAGATGTTACACACCAAGG
Found at i:15618468 original size:24 final size:25
Alignment explanation
Indices: 15618441--15618488 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
15618431 TATATTTTTA
15618441 TTTAAT-TAAAAT-ATAATATAAAAT
1 TTTAATATAAAATAATAA-ATAAAAT
15618465 TTTAATAATAAAATAATAAATAAA
1 TTTAAT-ATAAAATAATAAATAAA
15618489 TAGTCAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 6 0.29
26 11 0.52
27 4 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
TTTAATATAAAATAATAAATAAAAT
Found at i:15619370 original size:19 final size:19
Alignment explanation
Indices: 15619348--15619393 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
15619338 AATAATATCT
15619348 AAAAATACTAATATTTATA
1 AAAAATACTAATATTTATA
* * * *
15619367 AAAAAAATTTATTTTTATA
1 AAAAATACTAATATTTATA
15619386 AAAAATAC
1 AAAAATAC
15619394 ACAAATAAAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATACTAATATTTATA
Found at i:15625348 original size:21 final size:21
Alignment explanation
Indices: 15625324--15625372 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
15625314 TGAGTGATCA
15625324 TTGAACTTGTTTGAATAA-TTT
1 TTGAACTTGTTTGAA-AAGTTT
*
15625345 TTGAAGTTGTTTGAAAATGTTT
1 TTGAACTTGTTTGAAAA-GTTT
15625367 TTGAAC
1 TTGAAC
15625373 ATAATTTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 14 0.58
22 8 0.33
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (21 bp):
TTGAACTTGTTTGAAAAGTTT
Found at i:15625527 original size:21 final size:22
Alignment explanation
Indices: 15625469--15625550 Score: 98
Period size: 22 Copynumber: 3.9 Consensus size: 22
15625459 ATGATCTTTG
15625469 AACTTGTTTGAATAA--TTTTA
1 AACTTGTTTGAATAAGTTTTTA
* * *
15625489 AAGTTGTTTGAATCAGTTTTTG
1 AACTTGTTTGAATAAGTTTTTA
15625511 AACTTGTTTGAAT-AGTTTTTA
1 AACTTGTTTGAATAAGTTTTTA
* *
15625532 AACTTTTTTAAATAAGTTT
1 AACTTGTTTGAATAAGTTT
15625551 GAAAGTGCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
20 13 0.25
21 18 0.35
22 21 0.40
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.51
Consensus pattern (22 bp):
AACTTGTTTGAATAAGTTTTTA
Found at i:15625850 original size:20 final size:19
Alignment explanation
Indices: 15625826--15625874 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
15625816 AGAATGTATG
**
15625826 GATACATTTCCTAATATAT
1 GATACATTTCAAAATATAT
15625845 GTATACATTTCAAAATATAT
1 G-ATACATTTCAAAATATAT
15625865 CGATACATTT
1 -GATACATTT
15625875 GGTCTAGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (19 bp):
GATACATTTCAAAATATAT
Found at i:15644932 original size:24 final size:23
Alignment explanation
Indices: 15644903--15644948 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15644893 TTAAAATAAC
15644903 TTTAAACCCAAAAGCTCTGATACT
1 TTTAAA-CCAAAAGCTCTGATACT
*
15644927 TTTAAATCAAAAGCTCTGATAC
1 TTTAAACCAAAAGCTCTGATAC
15644949 CACCTGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (23 bp):
TTTAAACCAAAAGCTCTGATACT
Found at i:15652800 original size:54 final size:54
Alignment explanation
Indices: 15652718--15652821 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
15652708 ATGAAATGCA
*
15652718 AATTTCAGCAAGAAAATGCCTTTACAAAGGCTGAGTGCTAAGACTTTAAGTGCG
1 AATTTCAACAAGAAAATGCCTTTACAAAGGCTGAGTGCTAAGACTTTAAGTGCG
*
15652772 AATTTCAACAAGAAAATGCCTTTACAAAGGCTGAGTGCTAAGCCTTTAAG
1 AATTTCAACAAGAAAATGCCTTTACAAAGGCTGAGTGCTAAGACTTTAAG
15652822 CTTATGTGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTTCAACAAGAAAATGCCTTTACAAAGGCTGAGTGCTAAGACTTTAAGTGCG
Found at i:15655405 original size:13 final size:13
Alignment explanation
Indices: 15655383--15655426 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
15655373 TTGAATTTCC
*
15655383 TTATTATTTTATT
1 TTATTTTTTTATT
*
15655396 TTATTTTTTTATC
1 TTATTTTTTTATT
*
15655409 ATA-TTTTTTATT
1 TTATTTTTTTATT
15655421 TTATTT
1 TTATTT
15655427 CTAATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTTTTTATT
Found at i:15655407 original size:18 final size:18
Alignment explanation
Indices: 15655386--15655442 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
15655376 AATTTCCTTA
15655386 TTATTTTATTTTATTTTT
1 TTATTTTATTTTATTTTT
** *
15655404 TTATCATATTTT-TTATT
1 TTATTTTATTTTATTTTT
15655421 TTATTTCTAATTATTATTTTT
1 TTATTT-T-ATT-TTATTTTT
15655442 T
1 T
15655443 CATACTTTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 8 0.28
18 11 0.38
19 3 0.10
20 2 0.07
21 5 0.17
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTTTATTTTATTTTT
Found at i:15655438 original size:25 final size:23
Alignment explanation
Indices: 15655383--15655442 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 23
15655373 TTGAATTTCC
*
15655383 TTATTATTTTATTTTATTTTTTTA
1 TTATT-TTTTATTTTATTTTATTA
15655407 TCATATTTTTTATTTTATTTCTAATTA
1 T--TATTTTTTATTTTATTT-T-ATTA
15655434 TTATTTTTT
1 TTATTTTTT
15655443 CATACTTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 1 0.03
25 21 0.68
26 5 0.16
27 4 0.13
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (23 bp):
TTATTTTTTATTTTATTTTATTA
Found at i:15655457 original size:35 final size:36
Alignment explanation
Indices: 15655396--15655475 Score: 83
Period size: 35 Copynumber: 2.2 Consensus size: 36
15655386 TTATTTTATT
* **
15655396 TTATTTTTTTATCATATTTTTTATTTTAT-TTCTAA
1 TTATTTTTTTATCATACTTTACATTTTATATTCTAA
*
15655431 TTATTATTTTT-TCATACTTTACATTTTTTATTCTAA
1 TTATT-TTTTTATCATACTTTACATTTTATATTCTAA
*
15655467 GTTACTTTT
1 -TTATTTTT
15655476 ATTTTCCTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
35 19 0.51
36 14 0.38
37 4 0.11
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.68
Consensus pattern (36 bp):
TTATTTTTTTATCATACTTTACATTTTATATTCTAA
Found at i:15655599 original size:17 final size:18
Alignment explanation
Indices: 15655568--15655601 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15655558 TTTATTATAC
*
15655568 TATTTCTTATCTTTTTTA
1 TATTTCTTATATTTTTTA
15655586 TATTT-TTATATTTTTT
1 TATTTCTTATATTTTTT
15655602 CATAAGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTTCTTATATTTTTTA
Found at i:15655784 original size:17 final size:16
Alignment explanation
Indices: 15655762--15655802 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
15655752 GTTGTTTTAG
15655762 ATTTTTTATTATTATTT
1 ATTTTTTATTATT-TTT
15655779 ATTTTTT-TTATTTTT
1 ATTTTTTATTATTTTT
*
15655794 -TTATTTATT
1 ATTTTTTATT
15655803 TAATGTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 5 0.23
15 5 0.23
16 5 0.23
17 7 0.32
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
ATTTTTTATTATTTTT
Found at i:15655787 original size:21 final size:21
Alignment explanation
Indices: 15655763--15655803 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15655753 TTGTTTTAGA
15655763 TTTTTTA--TTATTATTTATT
1 TTTTTTATTTTATTATTTATT
*
15655782 TTTTTTATTTTTTTATTTATT
1 TTTTTTATTTTATTATTTATT
15655803 T
1 T
15655804 AATGTCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
21 12 0.63
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTATTTTATTATTTATT
Found at i:15657754 original size:37 final size:37
Alignment explanation
Indices: 15657695--15657986 Score: 377
Period size: 37 Copynumber: 7.8 Consensus size: 37
15657685 TTTTTTTTTT
* ** * * *
15657695 AAATAAACTCCTCAAAATTGAGGCAATGAAACCTGAA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTAA
*
15657732 AAATGAACTCCTCAAAGCTGAGGCAACAAAACTTTTAA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAAC-TTTAA
* *
15657770 AAATGAACTTCTCAAAGCTGAGGCAACGAAACTTTTA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTAA
* * *
15657807 AAATGAACTCTTCAAAGCTGAGGCAATGAAACTTTTA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTAA
15657844 AAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTTAA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAAC--TTTAA
* *
15657883 AAATGAACTCCTCAAAGCTGAGGCAATGAAACTTTTA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTAA
* *
15657920 AAATGAATTCCTCAAAGTTGAGGCAACGAAACTTTTAA
1 AAATGAACTCCTCAAAGCTGAGGCAACGAAAC-TTTAA
* * *
15657958 AAATGAACTCCTTAAAACTGAGGTAACGA
1 AAATGAACTCCTCAAAGCTGAGGCAACGA
15657987 GATCTTTTTC
Statistics
Matches: 224, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
37 128 0.57
38 61 0.27
39 35 0.16
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.23
Consensus pattern (37 bp):
AAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTAA
Found at i:15657918 original size:76 final size:75
Alignment explanation
Indices: 15657690--15657980 Score: 415
Period size: 75 Copynumber: 3.9 Consensus size: 75
15657680 AAGGTTTTTT
* * ** * * *
15657690 TTTTTAAATAAACTCCTCAAAATTGAGGCAATGAAAC-CTGAAAAATGAACTCCTCAAAGCTGAG
1 TTTTAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAACTCCTCAAAGCTGAG
**
15657754 GCAACAAAAC
66 GCAATGAAAC
* *
15657764 TTTTAAAAATGAACTTCTCAAAGCTGAGGCAACGAAACTTTT-AAAATGAACTCTTCAAAGCTGA
1 TTTT-AAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAACTCCTCAAAGCTGA
15657828 GGCAATGAAAC
65 GGCAATGAAAC
15657839 TTTTAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTTAAAAATGAACTCCTCAAAGCTGA
1 TTTTAAAATGAACTCCTCAAAGCTGAGGCAACGAAAC-TTTTAAAAATGAACTCCTCAAAGCTGA
15657904 GGCAATGAAAC
65 GGCAATGAAAC
* * * *
15657915 TTTTAAAATGAATTCCTCAAAGTTGAGGCAACGAAACTTTTAAAAATGAACTCCTTAAAACTGAG
1 TTTTAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAACTCCTCAAAGCTGAG
15657980 G
66 G
15657981 TAACGAGATC
Statistics
Matches: 196, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
74 36 0.18
75 92 0.47
76 68 0.35
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (75 bp):
TTTTAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAACTCCTCAAAGCTGAG
GCAATGAAAC
Found at i:15676478 original size:13 final size:13
Alignment explanation
Indices: 15676460--15676484 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15676450 AGAGAAATTG
15676460 TGATTTTATAAAA
1 TGATTTTATAAAA
15676473 TGATTTTATAAA
1 TGATTTTATAAA
15676485 TTTTTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:15680457 original size:15 final size:15
Alignment explanation
Indices: 15680419--15680465 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
15680409 TAAAACAACC
*
15680419 TTAAAATCAAAAACT
1 TTAAAATCCAAAACT
*
15680434 TTAAAATCCAAAGCT
1 TTAAAATCCAAAACT
*
15680449 TTAAAATCCAAATCT
1 TTAAAATCCAAAACT
15680464 TT
1 TT
15680466 GATCTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (15 bp):
TTAAAATCCAAAACT
Found at i:15683070 original size:27 final size:27
Alignment explanation
Indices: 15683019--15683070 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
15683009 ATGTCCTGGT
*
15683019 GGTGGAAAATTACAATTTTGCCCCTAG
1 GGTGGAAAATTACAATTTTGACCCTAG
*
15683046 GGTGGCAAAATTACCATTTT-ACCCT
1 GGTGG-AAAATTACAATTTTGACCCT
15683071 TTTACTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTGACCCTAG
Found at i:15683141 original size:20 final size:20
Alignment explanation
Indices: 15683124--15683161 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15683114 CCTCAAATCT
15683124 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
15683144 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
15683162 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:15686913 original size:13 final size:12
Alignment explanation
Indices: 15686897--15686956 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 12
15686887 TTATATTTAA
15686897 TTATTATTTTATT
1 TTATT-TTTTATT
*
15686910 TTATTTTTTTATC
1 TTA-TTTTTTATT
*
15686923 ATATTTTTTATT
1 TTATTTTTTATT
* *
15686935 TTATTTCTAATT
1 TTATTTTTTATT
15686947 ATTATTTTTT
1 -TTATTTTTT
15686957 CATACTTTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 17 0.46
13 18 0.49
14 2 0.05
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (12 bp):
TTATTTTTTATT
Found at i:15686918 original size:30 final size:30
Alignment explanation
Indices: 15686881--15686940 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
15686871 TTTTTTGGTC
15686881 ATTTTTTTAT-ATTTAATTATTATTTTATTTT
1 ATTTTTTTATCA--TAATTATTATTTTATTTT
* *
15686912 ATTTTTTTATCATATTTTTTATTTTATTT
1 ATTTTTTTATCATAATTATTATTTTATTT
15686941 CTAATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 15 0.58
31 10 0.38
32 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (30 bp):
ATTTTTTTATCATAATTATTATTTTATTTT
Found at i:15686920 original size:25 final size:23
Alignment explanation
Indices: 15686885--15686954 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 23
15686875 TTGGTCATTT
*
15686885 TTTTATATTTAATTATTATTTTA
1 TTTTATTTTTAATTATTATTTTA
*
15686908 TTTTATTTTTTTATCATATT-TTTTA
1 TTTTA-TTTTTAAT--TATTATTTTA
*
15686933 TTTTATTTCTAATTATTATTTT
1 TTTTATTTTTAATTATTATTTT
15686955 TTCATACTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
22 4 0.10
23 9 0.23
24 12 0.31
25 10 0.26
26 4 0.10
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTTATTTTTAATTATTATTTTA
Found at i:15686955 original size:25 final size:24
Alignment explanation
Indices: 15686885--15686956 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 24
15686875 TTGGTCATTT
15686885 TTTTATATTTAATTATTA--TTTTA
1 TTTTAT-TTTAATTATTATTTTTTA
*
15686908 TTTTATTTT-TTTATCATATTTTTTA
1 TTTTATTTTAATTAT--TATTTTTTA
15686933 TTTTATTTCTAATTATTATTTTTT
1 TTTTATTT-TAATTATTATTTTTT
15686957 CATACTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
21 4 0.10
22 3 0.07
23 8 0.20
25 21 0.51
26 1 0.02
27 4 0.10
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTATTTTAATTATTATTTTTTA
Found at i:15686971 original size:35 final size:33
Alignment explanation
Indices: 15686881--15686980 Score: 78
Period size: 35 Copynumber: 2.8 Consensus size: 33
15686871 TTTTTTGGTC
* *
15686881 ATTTTTTTATATTTAATTATTATTT-TATTTTATT
1 ATTTTTTCATATTTAATT-TTATTTCTA-ATTATT
*
15686915 -TTTTTATCATATTTTTTATTTTATTTCTAATTATT
1 ATTTTT-TCATA--TTTAATTTTATTTCTAATTATT
*
15686950 ATTTTTTCATACTTTACATTTTTTATTCTAA
1 ATTTTTTCATA-TTTA-ATTTTAT-TTCTAA
15686981 GTTACTTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
33 5 0.09
34 7 0.13
35 22 0.42
36 19 0.36
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (33 bp):
ATTTTTTCATATTTAATTTTATTTCTAATTATT
Found at i:15692610 original size:18 final size:18
Alignment explanation
Indices: 15692563--15692610 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
15692553 ATGTGAAATG
*
15692563 AAATT-AAATAAATTAAA
1 AAATTAAAATTAATTAAA
* * *
15692580 AAATCACATTTAATTAAA
1 AAATTAAAATTAATTAAA
15692598 AAATTAAAATTAA
1 AAATTAAAATTAA
15692611 AATCAAATTA
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATTAAAATTAATTAAA
Found at i:15695584 original size:34 final size:33
Alignment explanation
Indices: 15695544--15695657 Score: 101
Period size: 34 Copynumber: 3.5 Consensus size: 33
15695534 GAAGGAAGCT
**
15695544 TTGGCGTGTAATATCTGGTGTTAAAGCTTTGGTC
1 TTGGCGTGTAATATCTGGTGTT-AAGCTTTGACC
* *
15695578 TTGGCGTGTAATA--TGCTG--AAGTTTTGACC
1 TTGGCGTGTAATATCTGGTGTTAAGCTTTGACC
* *
15695607 TTGGCGTGTAACATCTGGTGTTGAAGCTTTGACT
1 TTGGCGTGTAATATCTGGTGTT-AAGCTTTGACC
* * *
15695641 TTAGCATGTAACATCTG
1 TTGGCGTGTAATATCTG
15695658 CTGCTAAAGT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
29 20 0.31
31 4 0.06
32 4 0.06
34 37 0.57
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (33 bp):
TTGGCGTGTAATATCTGGTGTTAAGCTTTGACC
Found at i:15696336 original size:23 final size:24
Alignment explanation
Indices: 15696267--15696322 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
15696257 GTTATTTTCG
*
15696267 AAAACACTTAATCTTTGAGGGTTA
1 AAAAAACTTAATCTTTGAGGGTTA
15696291 AAAAAACTTAATCTTTGAGGGTTA
1 AAAAAACTTAATCTTTGAGGGTTA
15696315 AAAAAACT
1 AAAAAACT
15696323 ATCTTTTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (24 bp):
AAAAAACTTAATCTTTGAGGGTTA
Found at i:15697588 original size:40 final size:40
Alignment explanation
Indices: 15697530--15697609 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
15697520 TGTACTTTTG
*
15697530 ATTTCTCTCTCTCGCCATCCT-CCTCTCTCTAATTTTATCA
1 ATTTCTCTCTCTCACCAT-CTACCTCTCTCTAATTTTATCA
*
15697570 ATTTCTCTCTC-CTACCATCTAGCTCTCTCTAATTTTATCA
1 ATTTCTCTCTCTC-ACCATCTACCTCTCTCTAATTTTATCA
15697610 CCATCGTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
39 3 0.08
40 33 0.92
ACGTcount: A:0.17, C:0.35, G:0.03, T:0.45
Consensus pattern (40 bp):
ATTTCTCTCTCTCACCATCTACCTCTCTCTAATTTTATCA
Found at i:15701521 original size:123 final size:123
Alignment explanation
Indices: 15701220--15701567 Score: 398
Period size: 123 Copynumber: 2.8 Consensus size: 123
15701210 TATGGCATGG
* * * * *
15701220 TTTAAACATGGCATGTAACTTGATCTCTATCTTTTTATTTCACTAGGACATAAACTCTTAGAGTT
1 TTTAAGCATGGCATGTAACTTG-TCTCTATCTTTATATTTCACTAAGACATAAACTATTGGAGTT
* ** *
15701285 AAAGACCTTAAACATGGTGTGTAATAACTTTTTTTTTTCAACATGACATGTAACAACTTTTT
65 AAACACCTTAAACATGGCATGTAATAAC---TTTTTCTCAACATGACATGTAACAACTTTTT
* * * *
15701347 TTTCAATG--TGACGTGTAACTTGGTCTCTATCTTTATATTTCACT-AGAACATAAATTGTTGGA
1 TTT-AA-GCATGGCATGTAACTT-GTCTCTATCTTTATATTTCACTAAG-ACATAAACTATTGGA
* * * *
15701409 GTTAAACACCTTAAATATAGCATGCAATAACTTTTTCTCAACATGACGTGTAACAA-TTTTT
62 GTTAAACACCTTAAACATGGCATGTAATAACTTTTTCTCAACATGACATGTAACAACTTTTT
* * *
15701470 TTTAAGCATGGCATGTAACTTAGTTTCTATCTTTGTATTTCACTAAGACATAAACTATTGGAATT
1 TTTAAGCATGGCATGTAACTT-GTCTCTATCTTTATATTTCACTAAGACATAAACTATTGGAGTT
*
15701535 AAACACCTTCAACATGGCATGTAATAACTTTTT
65 AAACACCTTAAACATGGCATGTAATAACTTTTT
15701568 TTTTTCAACA
Statistics
Matches: 186, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
121 1 0.01
122 2 0.01
123 83 0.45
124 25 0.13
126 1 0.01
127 71 0.38
128 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (123 bp):
TTTAAGCATGGCATGTAACTTGTCTCTATCTTTATATTTCACTAAGACATAAACTATTGGAGTTA
AACACCTTAAACATGGCATGTAATAACTTTTTCTCAACATGACATGTAACAACTTTTT
Found at i:15701620 original size:100 final size:100
Alignment explanation
Indices: 15701465--15701674 Score: 296
Period size: 100 Copynumber: 2.1 Consensus size: 100
15701455 CGTGTAACAA
* * *
15701465 TTTTTTTTAAGCATGGCATGTAACTTAGTTTCTATCTTTGTATTTCACTAAGACATAAACTATTG
1 TTTTTTTTAAGCATGGCATGTAAATTAGTCTCTATCTTTGTATTTCACTAAGACATAAACTACTG
*
15701530 GAATTAAACACCTTCAACATGGCATGTAATAACTT
66 GAATTAAACACCTTAAACATGGCATGTAATAACTT
* * *
15701565 TTTTTTTTCAA-CATGGCATGTAAATTGGTCTCTATCTTTGTATTTCACTAGGACATAAACTCCT
1 TTTTTTTT-AAGCATGGCATGTAAATTAGTCTCTATCTTTGTATTTCACTAAGACATAAACTACT
* * * **
15701629 GGAGTTAAATACTTTAAACATGGTGTGTAATAACTT
65 GGAATTAAACACCTTAAACATGGCATGTAATAACTT
15701665 TTTTTTTTAA
1 TTTTTTTTAA
15701675 TGTGATGTGT
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
99 2 0.02
100 93 0.96
101 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (100 bp):
TTTTTTTTAAGCATGGCATGTAAATTAGTCTCTATCTTTGTATTTCACTAAGACATAAACTACTG
GAATTAAACACCTTAAACATGGCATGTAATAACTT
Found at i:15701705 original size:25 final size:26
Alignment explanation
Indices: 15701646--15701709 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 26
15701636 AATACTTTAA
*
15701646 ACATGGTGTGTAATAACTTTTTTTTTT
1 ACATGATGTGTAATAAC-TTTTTTTTT
15701673 A-ATGTGATGTGTAATAAC-TTTTTTTT
1 ACA--TGATGTGTAATAACTTTTTTTTT
15701699 ACATGATGTGT
1 ACATGATGTGT
15701710 TACTTGGTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
25 8 0.24
26 10 0.30
27 2 0.06
28 13 0.39
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (26 bp):
ACATGATGTGTAATAACTTTTTTTTT
Found at i:15701822 original size:124 final size:122
Alignment explanation
Indices: 15701589--15701822 Score: 276
Period size: 124 Copynumber: 1.9 Consensus size: 122
15701579 GGCATGTAAA
* * * **
15701589 TTGGTCTCTATCTTTGTATTTCACTAGGACATAAACTCCTGGAGTTAAATACTTTAAACATGGTG
1 TTGGTCTCTATCTTTATATTTCACTAGAACATAAACTCCTGGAGTTAAATACCTTAAACATGGCA
* * *
15701654 TGTAATAACTTTTTTTTTTAATGTGATGTGTAATAACTTTTTTTTACATGATGTGTTAC
66 TGTAACAACTTTTTTTTTGAATGTGA-GTGTAATAAC-TATTTTTACATGATGTGTTAC
* * * *
15701713 TTGGTCTTTATCTTTATATTTCACTATAACATAAACTCTTGGAGTTGAATACCTTAAACATGGCA
1 TTGGTCTCTATCTTTATATTTCACTAGAACATAAACTCCTGGAGTTAAATACCTTAAACATGGCA
15701778 TGTAACAACATTTTCTTTTTCGACATG-GCA-TGTAATAAC-ATTTTT
66 TGTAACAAC-TTTT-TTTTT-GA-ATGTG-AGTGTAATAACTATTTTT
15701823 TTGAATATGA
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
124 69 0.74
125 4 0.04
126 14 0.15
127 2 0.02
128 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (122 bp):
TTGGTCTCTATCTTTATATTTCACTAGAACATAAACTCCTGGAGTTAAATACCTTAAACATGGCA
TGTAACAACTTTTTTTTTGAATGTGAGTGTAATAACTATTTTTACATGATGTGTTAC
Found at i:15706489 original size:15 final size:15
Alignment explanation
Indices: 15706469--15706513 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
15706459 ATATAAGCAC
*
15706469 CATTCATCATAGAAA
1 CATTCAACATAGAAA
15706484 CATTCAACA-A-AAA
1 CATTCAACATAGAAA
*
15706497 CATTCAGCATAGAAA
1 CATTCAACATAGAAA
15706512 CA
1 CA
15706514 ACAAAATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 11 0.42
14 2 0.08
15 13 0.50
ACGTcount: A:0.51, C:0.22, G:0.07, T:0.20
Consensus pattern (15 bp):
CATTCAACATAGAAA
Found at i:15711772 original size:61 final size:59
Alignment explanation
Indices: 15711601--15711772 Score: 161
Period size: 61 Copynumber: 2.8 Consensus size: 59
15711591 CAGTGAATAC
* * * *
15711601 AATTTCTATTGATACATTGTCTAGATGTATCAATAACTTTGAGTGGGGAAGCATTCTATGT
1 AATTTCTATTGATACATTGTCTAAATGTATCAATAA-TTTGAGT-AGAAAACATTCTATGT
* * * *
15711662 AATTTCTATTGATACATTGT-TCAAATGCATCGATAAATTTGAAGAAGAAAACATTTTGGATG-
1 AATTTCTATTGATACATTGTCT-AAATGTATCAAT-AATTTG-AGTAGAAAACATTCT--ATGT
*
15711724 AATTT-TATTGATACATTATCTAAATGTATCAATAGATTTGAGGTAGAAA
1 AATTTCTATTGATACATTGTCTAAATGTATCAATA-ATTTGA-GTAGAAA
15711773 GCATGTTGTG
Statistics
Matches: 91, Mismatches: 12, Indels: 16
0.76 0.10 0.13
Matches are distributed among these distances:
60 3 0.03
61 75 0.82
62 10 0.11
63 3 0.03
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (59 bp):
AATTTCTATTGATACATTGTCTAAATGTATCAATAATTTGAGTAGAAAACATTCTATGT
Found at i:15712931 original size:36 final size:36
Alignment explanation
Indices: 15712890--15713011 Score: 138
Period size: 36 Copynumber: 3.4 Consensus size: 36
15712880 TGCATGTGTA
*
15712890 GTGTGGGAGTGCATATGACGGTAATGGTGTGGTGCG
1 GTGTGGGAGTGCACATGACGGTAATGGTGTGGTGCG
* * * * *
15712926 GTGTGGGAGTGCACCTGATGATATTTGCTGT-GTGCG
1 GTGTGGGAGTGCACATGACGGTA-ATGGTGTGGTGCG
* * *
15712962 GTGTGGAAGTGCACATGACGGTGATGGTGAGGTGCG
1 GTGTGGGAGTGCACATGACGGTAATGGTGTGGTGCG
*
15712998 GTGCGGGAGTGCAC
1 GTGTGGGAGTGCAC
15713012 CTAATGATGA
Statistics
Matches: 68, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
35 4 0.06
36 59 0.87
37 5 0.07
ACGTcount: A:0.16, C:0.12, G:0.45, T:0.26
Consensus pattern (36 bp):
GTGTGGGAGTGCACATGACGGTAATGGTGTGGTGCG
Found at i:15713007 original size:72 final size:74
Alignment explanation
Indices: 15712890--15713053 Score: 235
Period size: 72 Copynumber: 2.2 Consensus size: 74
15712880 TGCATGTGTA
* * * *
15712890 GTGTGGGAGTGCATATGACGGTAATGGTGTGGTGCGGTGTGGGAGTGCACCTGATGAT-AT-TTG
1 GTGTGGGAGTGCACATGACGGTAATGGTGAGGTGCGGTGCGGGAGTGCACCTAATGATGATATTG
*
15712953 CT-GTGTGCG
66 -TAATGTGCG
* *
15712962 GTGTGGAAGTGCACATGACGGTGATGGTGAGGTGCGGTGCGGGAGTGCACCTAATGATGATATTG
1 GTGTGGGAGTGCACATGACGGTAATGGTGAGGTGCGGTGCGGGAGTGCACCTAATGATGATATTG
15713027 TAATGTGCG
66 TAATGTGCG
15713036 GTGTGGGAGTGCACATGA
1 GTGTGGGAGTGCACATGA
15713054 TGACTTAGCT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
72 52 0.64
73 3 0.04
74 26 0.32
ACGTcount: A:0.19, C:0.12, G:0.42, T:0.27
Consensus pattern (74 bp):
GTGTGGGAGTGCACATGACGGTAATGGTGAGGTGCGGTGCGGGAGTGCACCTAATGATGATATTG
TAATGTGCG
Found at i:15719056 original size:34 final size:34
Alignment explanation
Indices: 15719018--15719091 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
15719008 AGGGCTGGTC
*
15719018 TTGGAGGCTGAAAAGAGCCATTTTTTTGCT-AGTT
1 TTGGAGGCTGAAAAGAGCCATTTTTCTGCTGA-TT
* *
15719052 TTGGAGGCTGGAAAGTGCCATTTTTCTGCTGATT
1 TTGGAGGCTGAAAAGAGCCATTTTTCTGCTGATT
15719086 TTGGAG
1 TTGGAG
15719092 TCCAAAAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.20, C:0.12, G:0.30, T:0.38
Consensus pattern (34 bp):
TTGGAGGCTGAAAAGAGCCATTTTTCTGCTGATT
Found at i:15719101 original size:34 final size:34
Alignment explanation
Indices: 15719018--15719103 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 34
15719008 AGGGCTGGTC
** * *
15719018 TTGGAGGCTGAAAAGAGCCATTTTTTTGCTAGTT
1 TTGGAGGCCAAAAAGTGCCATTTTTCTGCTAGTT
***
15719052 TTGGAGGCTGGAAAGTGCCATTTTTCTGCT-GATT
1 TTGGAGGCCAAAAAGTGCCATTTTTCTGCTAG-TT
*
15719086 TTGGAGTCCAAAAAGTGC
1 TTGGAGGCCAAAAAGTGC
15719104 ACAATTTTGC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 1 0.02
34 43 0.98
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (34 bp):
TTGGAGGCCAAAAAGTGCCATTTTTCTGCTAGTT
Found at i:15719427 original size:5 final size:5
Alignment explanation
Indices: 15719409--15719455 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
15719399 GGTGGGAGAG
*
15719409 AAAG- AAAG- AAAGA AAAGA AAAGA AAAGA AAAGA AAATA ACAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA A-AAGA AAA
15719456 ATGGGCATGG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
4 8 0.21
5 27 0.69
6 4 0.10
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:15725228 original size:2 final size:2
Alignment explanation
Indices: 15725221--15725265 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
15725211 GAGAAATAAA
15725221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15725263 AT A
1 AT A
15725266 GTGTGTGTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15725271 original size:2 final size:2
Alignment explanation
Indices: 15725266--15725297 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15725256 TATATATATA
15725266 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
15725298 NNNNNNNNNN
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:15726192 original size:21 final size:20
Alignment explanation
Indices: 15726148--15726195 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
15726138 CTTACCATCA
*
15726148 TTTTTAATATTTAAAGTATG
1 TTTTTAATATCTAAAGTATG
15726168 TTTTTAATATCTAAAGTATG
1 TTTTTAATATCTAAAGTATG
15726188 TTTTTAAT
1 TTTTTAAT
15726196 CGATTTTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTTTAATATCTAAAGTATG
Found at i:15731463 original size:19 final size:19
Alignment explanation
Indices: 15731436--15731473 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15731426 CCATTTGACT
15731436 TATTAGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
*
15731455 TATTGGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
15731474 GTTAAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTAGAGTATGATTTGAG
Found at i:15738581 original size:23 final size:24
Alignment explanation
Indices: 15738546--15738592 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
15738536 AGAAAATGGG
*
15738546 AAACTACAGAAAA-GAAAAAACAAA
1 AAACTACACAAAATG-AAAAACAAA
15738570 AAACT-CACAAAATGAAAAACAAA
1 AAACTACACAAAATGAAAAACAAA
15738593 GAGAGAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.72, C:0.15, G:0.06, T:0.06
Consensus pattern (24 bp):
AAACTACACAAAATGAAAAACAAA
Found at i:15745149 original size:16 final size:17
Alignment explanation
Indices: 15745128--15745162 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
15745118 CTTAGGACCT
*
15745128 TACTTTTAT-TGTTGTA
1 TACTTTTATCTATTGTA
15745144 TACTTTTATCTATTGTA
1 TACTTTTATCTATTGTA
15745161 TA
1 TA
15745163 GATTATCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.60
Consensus pattern (17 bp):
TACTTTTATCTATTGTA
Found at i:15748421 original size:2 final size:2
Alignment explanation
Indices: 15748384--15748408 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15748374 ACCATATATT
15748384 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
15748409 AAAGGACAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15748499 original size:15 final size:16
Alignment explanation
Indices: 15748479--15748515 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
15748469 CTCTGCTTTT
15748479 TCCTTTCTCTT-TTGC
1 TCCTTTCTCTTCTTGC
15748494 TCCTTT-TCTTCTTGC
1 TCCTTTCTCTTCTTGC
15748509 T-CTTTCT
1 TCCTTTCT
15748516 TCAATCGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.00, C:0.32, G:0.05, T:0.62
Consensus pattern (16 bp):
TCCTTTCTCTTCTTGC
Found at i:15749887 original size:186 final size:182
Alignment explanation
Indices: 15749576--15749910 Score: 433
Period size: 186 Copynumber: 1.8 Consensus size: 182
15749566 TTAGTGATAG
* * * * *
15749576 CCAACTTCATTGAATGAATGAACAAGTAATGCTTCTTGACATCAAGTAACCAACAGAACCAAACA
1 CCAACTTCATTGAATGAATGAACAAATAATACTTCTTAACATCAAGCAACCAACAAAACCAAACA
* ** *
15749641 ACTAATTGTTATAATGATGATGATGGCACCTTAGAGGTGGCTTTTTATGATTTTGTTTCTTCACT
66 ACTAATTGTTATAATGACGATGATGGCACCTTAGAGCAGGCTTTTTATGACTTTGTTTCTTCACT
15749706 TATCCCAAAAAATGGTGGTGATGATGATGATGACAATGAAGCGAAATATAAAA
131 TATCCC-AAAAATGGTGGTGATGATGATGATGACAATGAAGCGAAATATAAAA
* * *
15749759 CCAACTTCATT-AACTGAATGAACAACAAATAATACTTCTTAATATCAGGCAACCAACAAAACCT
1 CCAACTTCATTGAA-TGAATG---AACAAATAATACTTCTTAACATCAAGCAACCAACAAAACCA
* * *
15749823 AATAACTAATTGTTATAATGACGATGATGGC-CTCTTAGAGCCAGG-TTTTTGTGCCTTTGTTTC
62 AACAACTAATTGTTATAATGACGATGATGGCAC-CTTAGAG-CAGGCTTTTTATGACTTTGTTTC
* *
15749886 TTCACTTGTCCCAAAAGTGGTGGTG
125 TTCACTTATCCCAAAAATGGTGGTG
15749911 GTGGCAGCGG
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
182 2 0.02
183 17 0.13
185 13 0.10
186 95 0.74
187 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (182 bp):
CCAACTTCATTGAATGAATGAACAAATAATACTTCTTAACATCAAGCAACCAACAAAACCAAACA
ACTAATTGTTATAATGACGATGATGGCACCTTAGAGCAGGCTTTTTATGACTTTGTTTCTTCACT
TATCCCAAAAATGGTGGTGATGATGATGATGACAATGAAGCGAAATATAAAA
Found at i:15749948 original size:32 final size:33
Alignment explanation
Indices: 15749899--15749964 Score: 125
Period size: 32 Copynumber: 2.0 Consensus size: 33
15749889 ACTTGTCCCA
15749899 AAAGTGGTGGTGGTGGCAGCGGAAATGATGGTG
1 AAAGTGGTGGTGGTGGCAGCGGAAATGATGGTG
15749932 AAAGTGGT-GTGGTGGCAGCGGAAATGATGGTG
1 AAAGTGGTGGTGGTGGCAGCGGAAATGATGGTG
15749964 A
1 A
15749965 TGATGATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 25 0.76
33 8 0.24
ACGTcount: A:0.26, C:0.06, G:0.47, T:0.21
Consensus pattern (33 bp):
AAAGTGGTGGTGGTGGCAGCGGAAATGATGGTG
Found at i:15749970 original size:3 final size:3
Alignment explanation
Indices: 15749955--15749985 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
15749945 GGCAGCGGAA
*
15749955 ATG ATG GTG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
15749986 CAATGAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:15751935 original size:235 final size:236
Alignment explanation
Indices: 15751523--15751994 Score: 838
Period size: 235 Copynumber: 2.0 Consensus size: 236
15751513 TAGCAAAGGC
*
15751523 CGGGAGTTTTACATATTACTATTTGTACTTATAAGAAAACAGAAAAATGGTCTCGGAAAATATAT
1 CGGGAGTTTTACATATTACTATTTGTACTTATAAGAAAACACAAAAATGGTCTCGGAAAATATAT
* * **
15751588 AAACCATTCCCATTAACTTGTAAAGTAAAGTAGAAAAATGCTCAAAGAACCCTGTGCAAATAATA
66 AAACCATTCCCATTAACTTGTAAAGTAAAGCAGAAAAATGCTAAAAGAACCCCATGCAAATAATA
* *
15751653 CACGTGTTCCTTCACACCAACCATCCATAAAAGCTGCAGCCTACATGATATTCACTATATGAATC
131 CACGTGTTCCTCCACACCAACCATCCATAAAAGCTGCAGCCTACATGATATTCACTACATGAATC
*
15751718 TGCACTAATATGCTTGAAAAATAAGTTACCTATGTACCATT
196 TGCACTAATATACTTGAAAAATAAGTTACCTATGTACCATT
15751759 CGGGAGTTTTACATATTACTATTTGTACTTATAAGAAAACACAAAAATGGTCTC-GAAAATATAT
1 CGGGAGTTTTACATATTACTATTTGTACTTATAAGAAAACACAAAAATGGTCTCGGAAAATATAT
* *
15751823 AAACCATTCCCATTAACTTGTAACGTAAAGCAGAAAGATGCTAAAAGAACCCCATGCAAATAATA
66 AAACCATTCCCATTAACTTGTAAAGTAAAGCAGAAAAATGCTAAAAGAACCCCATGCAAATAATA
*
15751888 CACGTGTTCCTCCACACCAACCATCCATAAAAGCTGCAGCCTACATGATATTCATTACATGAATC
131 CACGTGTTCCTCCACACCAACCATCCATAAAAGCTGCAGCCTACATGATATTCACTACATGAATC
15751953 TGCACTAATATACTTGAAAAATAAGTTACCTATGTACCATT
196 TGCACTAATATACTTGAAAAATAAGTTACCTATGTACCATT
15751994 C
1 C
15751995 AATAGCATTC
Statistics
Matches: 225, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
235 172 0.76
236 53 0.24
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (236 bp):
CGGGAGTTTTACATATTACTATTTGTACTTATAAGAAAACACAAAAATGGTCTCGGAAAATATAT
AAACCATTCCCATTAACTTGTAAAGTAAAGCAGAAAAATGCTAAAAGAACCCCATGCAAATAATA
CACGTGTTCCTCCACACCAACCATCCATAAAAGCTGCAGCCTACATGATATTCACTACATGAATC
TGCACTAATATACTTGAAAAATAAGTTACCTATGTACCATT
Found at i:15758299 original size:10 final size:10
Alignment explanation
Indices: 15758284--15758313 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
15758274 AAAAATAAGA
15758284 TTTTTCAATT
1 TTTTTCAATT
15758294 TTTTTCAATT
1 TTTTTCAATT
15758304 TTTTTCAATT
1 TTTTTCAATT
15758314 GAGTCTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTCAATT
Found at i:15760310 original size:3 final size:3
Alignment explanation
Indices: 15760295--15760326 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
15760285 AGCACCATCC
*
15760295 TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
15760327 TAAACTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:15764862 original size:20 final size:20
Alignment explanation
Indices: 15764837--15764877 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
15764827 TTTAATCTGT
15764837 TAATAATATAGGTTTTATAC
1 TAATAATATAGGTTTTATAC
15764857 TAATAATATAGGTTTTATAC
1 TAATAATATAGGTTTTATAC
15764877 T
1 T
15764878 TTCTCATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (20 bp):
TAATAATATAGGTTTTATAC
Found at i:15766201 original size:15 final size:16
Alignment explanation
Indices: 15766168--15766209 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
15766158 AAATTATAAC
*
15766168 TAAAACATTAATATTT
1 TAAAATATTAATATTT
15766184 TAAAATATTAAT-TTT
1 TAAAATATTAATATTT
*
15766199 TAAATTATTAA
1 TAAAATATTAA
15766210 GTGAAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TAAAATATTAATATTT
Found at i:15766550 original size:48 final size:46
Alignment explanation
Indices: 15766423--15766559 Score: 112
Period size: 42 Copynumber: 3.1 Consensus size: 46
15766413 AATATTTAAA
* *
15766423 AAATAAAATA--AAAAC-AAATAATC-ATAATAATATTTAAATTAT
1 AAATAAAATAGTAATACTAAATAATCAATATTAATATTTAAATTAT
* *
15766465 AGATAAAATAGTAGTACT--AT-AT-AATATTAATGA-TTAAATTAT
1 AAATAAAATAGTAATACTAAATAATCAATATTAAT-ATTTAAATTAT
* * *
15766507 AAATAAAATATTAATAATTAAATAATCAATTATTAATATTTAAAAATAT
1 AAATAAAATAGTAAT-ACTAAATAATCAA-TATTAATATTT-AAATTAT
15766556 AAAT
1 AAAT
15766560 TATTAATATT
Statistics
Matches: 73, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
42 39 0.53
43 5 0.07
44 3 0.04
45 2 0.03
46 2 0.03
47 3 0.04
48 9 0.12
49 10 0.14
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (46 bp):
AAATAAAATAGTAATACTAAATAATCAATATTAATATTTAAATTAT
Found at i:15766564 original size:23 final size:23
Alignment explanation
Indices: 15766509--15766584 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
15766499 TAAATTATAA
* * *
15766509 ATAAAATATTAATAATTAAATA-
1 ATAAATTATTAATATTTAAAAAT
*
15766531 ATCAATTATTAATATTTAAAAAT
1 ATAAATTATTAATATTTAAAAAT
15766554 ATAAATTATTAATATTTAAAAGAT
1 ATAAATTATTAATATTTAAAA-AT
15766578 A-AAATTA
1 ATAAATTA
15766585 AATAAAAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
22 18 0.38
23 26 0.55
24 3 0.06
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (23 bp):
ATAAATTATTAATATTTAAAAAT
Found at i:15766579 original size:22 final size:21
Alignment explanation
Indices: 15766507--15766580 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 21
15766497 ATTAAATTAT
* *
15766507 AAATAAAATATTAATAATTAA
1 AAATAAATTATTAATATTTAA
*
15766528 ATAATCAATTATTAATATTTAAA
1 A-AATAAATTATTAATATTT-AA
15766551 AATATAAATTATTAATATTTAA
1 AA-ATAAATTATTAATATTTAA
15766573 AAGATAAA
1 AA-ATAAA
15766581 ATTAAATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.02
22 25 0.56
23 19 0.42
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (21 bp):
AAATAAATTATTAATATTTAA
Found at i:15778576 original size:16 final size:16
Alignment explanation
Indices: 15778557--15778591 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15778547 GTATAAATCT
*
15778557 CATTTTTATTAAAAAA
1 CATTTTAATTAAAAAA
*
15778573 CATTTTAATTGAAAAA
1 CATTTTAATTAAAAAA
15778589 CAT
1 CAT
15778592 AATATTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (16 bp):
CATTTTAATTAAAAAA
Found at i:15790367 original size:157 final size:157
Alignment explanation
Indices: 15790189--15790578 Score: 663
Period size: 157 Copynumber: 2.5 Consensus size: 157
15790179 GGTATTTTTG
*
15790189 TTTTTTACTTTGATTTATTTTGTTATTCTTGGTTTAGGGTTTGGGTTTATGATTTGTATTGATAT
1 TTTTTTACTCTGATTTATTTTGTTATTCTTGGTTTAGGGTTTGGGTTTATGATTTGTATTGATAT
* * * *
15790254 GTTTACAGTTATTGAAATAGTAGTAGTATTCAGGTTTTGAGTTTTTGGTACTCTATTTTGTTTTT
66 GTTTACAGTTATTGAAATAATAGTAGTACTCAAGTTCTGAGTTTTTGGTACTCTATTTTGTTTTT
15790319 GTCTTAATTGTAACGGTCATAGTATTT
131 GTCTTAATTGTAACGGTCATAGTATTT
15790346 TTTTTTACTCTGATTTATTTTGTTATTCTTGGTTTAGGGTTTGGGTTTATGATTTGTATTGATAT
1 TTTTTTACTCTGATTTATTTTGTTATTCTTGGTTTAGGGTTTGGGTTTATGATTTGTATTGATAT
15790411 GTTTACAGTTATTGAAATAATAGTAGTACTCAAGTTCTGAGTTTTTGGTACTCTATTTTGTTTTT
66 GTTTACAGTTATTGAAATAATAGTAGTACTCAAGTTCTGAGTTTTTGGTACTCTATTTTGTTTTT
* *
15790476 GTCTTTATTGTAACGGTCATTGTATTT
131 GTCTTAATTGTAACGGTCATAGTATTT
* * * *
15790503 TTTTTTACTCTAATTTATTTTGTTATTCATGGTTTAGTGGTTTGGGTTTATAATCTGTATTGATA
1 TTTTTTACTCTGATTTATTTTGTTATTCTTGGTTTAG-GGTTTGGGTTTATGATTTGTATTGATA
*
15790568 TGTTTATAGTT
65 TGTTTACAGTT
15790579 TTTTATTTTT
Statistics
Matches: 220, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
157 185 0.84
158 35 0.16
ACGTcount: A:0.20, C:0.06, G:0.19, T:0.55
Consensus pattern (157 bp):
TTTTTTACTCTGATTTATTTTGTTATTCTTGGTTTAGGGTTTGGGTTTATGATTTGTATTGATAT
GTTTACAGTTATTGAAATAATAGTAGTACTCAAGTTCTGAGTTTTTGGTACTCTATTTTGTTTTT
GTCTTAATTGTAACGGTCATAGTATTT
Found at i:15794402 original size:2 final size:2
Alignment explanation
Indices: 15794395--15794419 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15794385 GACAATTTAA
15794395 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15794420 CTTTAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15798931 original size:15 final size:15
Alignment explanation
Indices: 15798891--15798933 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
15798881 TTATTTTATG
*
15798891 TTATCATTATAAAAA
1 TTATAATTATAAAAA
*
15798906 TTATAACTTATAAAAT
1 TTATAA-TTATAAAAA
*
15798922 TTTTAATTATAA
1 TTATAATTATAA
15798934 TATACATACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATAATTATAAAAA
Found at i:15802715 original size:26 final size:27
Alignment explanation
Indices: 15802648--15802715 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
15802638 ATCTTTCAAA
* * *
15802648 AAAATTCCCATTTTGTCCTCAAGTGGC
1 AAAATTACCATTTTGTCCTCAAATAGC
15802675 AAAATTACCATTTTGTCC-CAAATAGC
1 AAAATTACCATTTTGTCCTCAAATAGC
* * *
15802701 GAAATTTCCAATTTG
1 AAAATTACCATTTTG
15802716 ACTCTAATTC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
26 18 0.51
27 17 0.49
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (27 bp):
AAAATTACCATTTTGTCCTCAAATAGC
Found at i:15806621 original size:20 final size:20
Alignment explanation
Indices: 15806604--15806641 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15806594 CCTCAAATCT
15806604 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
15806624 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
15806642 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:15814766 original size:19 final size:20
Alignment explanation
Indices: 15814739--15814778 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
15814729 GCCTCGAACT
15814739 AGATCAAATAGAGAAT-TTA
1 AGATCAAATAGAGAATATTA
* *
15814758 AGATGAAATTGAGAATATTA
1 AGATCAAATAGAGAATATTA
15814778 A
1 A
15814779 AGTCCCAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.28
Consensus pattern (20 bp):
AGATCAAATAGAGAATATTA
Found at i:15818384 original size:17 final size:17
Alignment explanation
Indices: 15818345--15818384 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
15818335 TAATTGTTTT
15818345 TGTTTTATTTTAAGTTA
1 TGTTTTATTTTAAGTTA
15818362 -GCTTTTATTTTAAGTTA
1 TG-TTTTATTTTAAGTTA
15818379 TGTTTT
1 TGTTTT
15818385 TGCATGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.05
17 19 0.90
18 1 0.05
ACGTcount: A:0.20, C:0.03, G:0.12, T:0.65
Consensus pattern (17 bp):
TGTTTTATTTTAAGTTA
Found at i:15830750 original size:19 final size:19
Alignment explanation
Indices: 15830713--15830751 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15830703 GATTACTTTT
*
15830713 GGTGATGCTGACATTGGGA
1 GGTGATGCTGACATCGGGA
*
15830732 GGTGATGCTGACGTCGGGA
1 GGTGATGCTGACATCGGGA
15830751 G
1 G
15830752 ATTACTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.13, G:0.46, T:0.23
Consensus pattern (19 bp):
GGTGATGCTGACATCGGGA
Found at i:15832697 original size:43 final size:43
Alignment explanation
Indices: 15832581--15832702 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
15832571 TGGCTCGGCT
* ** * * **
15832581 ATGTGCGAGAAGGGAGTGCGCATAAGCTGAAGATGATCCGGTT
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
*
15832624 ATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCAGCC
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
*
15832667 ATGTACGAGTAGGGAGTGCGCATAAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGA
15832703 TGATGATGTG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.26, C:0.16, G:0.37, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAAGCTGGTGATGACCCAGCC
Found at i:15832729 original size:23 final size:23
Alignment explanation
Indices: 15832699--15832758 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
15832689 TAAGCTGGTG
* * *
15832699 ATGATGATGATGTGACGGTGTGT
1 ATGATGATGATGGGACGATGTGC
*
15832722 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGACGATGTGC
*
15832745 ATGATAATGATGGG
1 ATGATGATGATGGG
15832759 TATATGTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.38, T:0.32
Consensus pattern (23 bp):
ATGATGATGATGGGACGATGTGC
Found at i:15833124 original size:39 final size:39
Alignment explanation
Indices: 15833065--15833173 Score: 105
Period size: 39 Copynumber: 2.8 Consensus size: 39
15833055 CAGCGAAAAG
* * * *
15833065 GAATCTCGCTGAAACGAGAAACTCTCTGTTTCATCAAT-T
1 GAATTTCGCTGCAGCGAGAAACTCTCTGTTTC-TCAATCA
* *
15833104 GAATTTCGCTGCAGCGAGAAAC-CTTCTGTTTCTGAGTCA
1 GAATTTCGCTGCAGCGAGAAACTC-TCTGTTTCTCAATCA
* * *
15833143 CAATTTCGCTGCAGCGAAAAACTTTCTGTTT
1 GAATTTCGCTGCAGCGAGAAACTCTCTGTTT
15833174 TGGTCTCCTA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
38 4 0.07
39 54 0.93
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (39 bp):
GAATTTCGCTGCAGCGAGAAACTCTCTGTTTCTCAATCA
Found at i:15841442 original size:19 final size:20
Alignment explanation
Indices: 15841418--15841457 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
15841408 CCATTTGACT
15841418 TATTGGAGTATGATTT-AAG
1 TATTGGAGTATGATTTGAAG
*
15841437 TATTGGAGTGTGATTTGAAG
1 TATTGGAGTATGATTTGAAG
15841457 T
1 T
15841458 TTAGAAGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (20 bp):
TATTGGAGTATGATTTGAAG
Found at i:15845583 original size:18 final size:19
Alignment explanation
Indices: 15845560--15845596 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15845550 AAAAGAATTT
15845560 ATTTAA-AAATTTTAAATA
1 ATTTAATAAATTTTAAATA
*
15845578 ATTTAATAATTTTTAAATA
1 ATTTAATAAATTTTAAATA
15845597 TTATACCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTAATAAATTTTAAATA
Found at i:15845806 original size:21 final size:20
Alignment explanation
Indices: 15845771--15845820 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
15845761 AATAAAAGAA
*
15845771 TAAATATTTATTTAAAATTT
1 TAAATATTTAATTAAAATTT
**
15845791 TAAATAATTTAATTAATTTTT
1 TAAAT-ATTTAATTAAAATTT
15845812 TAAAATATT
1 T-AAATATT
15845821 ATACCTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 5 0.20
21 16 0.64
22 4 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TAAATATTTAATTAAAATTT
Done.