Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21822658
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 1067834 characters in sequence are not A, C, G, or T
File 57 of 59
Found at i:20814999 original size:62 final size:62
Alignment explanation
Indices: 20814836--20815090 Score: 415
Period size: 62 Copynumber: 4.1 Consensus size: 62
20814826 AACTGCATCC
20814836 AAAAAAAAAA-CTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCCAA
1 AAAAAAAAAACCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGG-CAA
*
20814898 ACAAAAAAAAGCCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCAA
1 A-AAAAAAAAACCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCAA
* *
20814961 AAAAAAAAAACCTGCTAAATTGAAAATCCTTAATAGGACGACTTAGGCAAAAGTTAAGGC-A
1 AAAAAAAAAACCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCAA
* * *
20815022 AAAAAAAAAGCCTACTAAGTTGAAAATCCTTAACAAGACGACTTAGGCAAAAGTTAAGGCAA
1 AAAAAAAAAACCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCAA
*
20815084 AATAAAA
1 AAAAAAA
20815091 TAATAATAAA
Statistics
Matches: 180, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
61 56 0.31
62 64 0.36
63 12 0.07
64 48 0.27
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (62 bp):
AAAAAAAAAACCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCAA
Found at i:20815063 original size:123 final size:125
Alignment explanation
Indices: 20814836--20815090 Score: 435
Period size: 123 Copynumber: 2.1 Consensus size: 125
20814826 AACTGCATCC
*
20814836 AAAAAAAAAACTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCCAAACA
1 AAAAAAAAAACTGCTAAATTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCCAAACA
* *
20814901 AAAAAAAGCCTGCTAAGTTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCAA
66 AAAAAAAGCCTACTAAGTTGAAAATCCTTAACAAGACGACTTAGGCAAAAGTTAAGGCAA
*
20814961 AAAAAAAAAACCTGCTAAATTGAAAATCCTTAATAGGACGACTTAGGCAAAAGTTAAGG-C-AA-
1 AAAAAAAAAA-CTGCTAAATTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCCAAAC
20815023 AAAAAAAAGCCTACTAAGTTGAAAATCCTTAACAAGACGACTTAGGCAAAAGTTAAGGCAA
65 AAAAAAAAGCCTACTAAGTTGAAAATCCTTAACAAGACGACTTAGGCAAAAGTTAAGGCAA
*
20815084 AATAAAA
1 AAAAAAA
20815091 TAATAATAAA
Statistics
Matches: 124, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
123 65 0.52
124 2 0.02
125 11 0.09
126 46 0.37
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (125 bp):
AAAAAAAAAACTGCTAAATTGAAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGCCAAACA
AAAAAAAGCCTACTAAGTTGAAAATCCTTAACAAGACGACTTAGGCAAAAGTTAAGGCAA
Found at i:20815587 original size:76 final size:76
Alignment explanation
Indices: 20815461--20815905 Score: 685
Period size: 76 Copynumber: 5.9 Consensus size: 76
20815451 CATGGTGATT
* * *
20815461 ATAAATTGTGTGCTATTTTAAAGAGCACCTCCCAAGGATCAACGAGTGCTATTATAAAGAGCACC
1 ATAAATTGTGTGCTATTATGAAGAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
*
20815526 CTCTAAGGATA
66 CTCCAAGGATA
* * * *
20815537 ATAAATTATGTGCTATTATGAAGAGCACCGCCTAAGGATCAGCAAGTGCTATTATAAAGAGCACC
1 ATAAATTGTGTGCTATTATGAAGAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
20815602 CTCCAAGGATA
66 CTCCAAGGATA
* * * *
20815613 ATAAATTGTGTGCTATTACGAAGAACACCTCCCAAGGATCAACAAATGCTATGATAAAGAGCACC
1 ATAAATTGTGTGCTATTATGAAGAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
*
20815678 CTCTAAGGATA
66 CTCCAAGGATA
* * * *
20815689 ATAAATTGTGTGCTATTTTGAAGAGCACCTTCCAAGGATCAACAAATGCTATGATAAAGAGCACC
1 ATAAATTGTGTGCTATTATGAAGAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
20815754 CTCCAAGGATA
66 CTCCAAGGATA
* *
20815765 ATAAATTGTGTGCTATTTTGAAAAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
1 ATAAATTGTGTGCTATTATGAAGAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
20815830 CTCCAAGGATA
66 CTCCAAGGATA
* *
20815841 ATAAATTGTGTGCTATTATGAAGAGCACC-CCCTAAGGATCAATAAGTACTATTATAAAGAGCAC
1 ATAAATTGTGTGCTATTATGAAGAGCACCTCCC-AAGGATCAACAAGTGCTATTATAAAGAGCAC
20815905 C
65 C
20815906 ACTTTAAATT
Statistics
Matches: 338, Mismatches: 30, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
75 3 0.01
76 335 0.99
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (76 bp):
ATAAATTGTGTGCTATTATGAAGAGCACCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACC
CTCCAAGGATA
Found at i:20816057 original size:19 final size:19
Alignment explanation
Indices: 20816033--20816074 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
20816023 ACAAAAAAAA
20816033 AATAAAAAAAAGTTGAAGC
1 AATAAAAAAAAGTTGAAGC
* *
20816052 AATAAAAAAAATTTGCAGC
1 AATAAAAAAAAGTTGAAGC
20816071 AATA
1 AATA
20816075 TGGATCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.62, C:0.07, G:0.12, T:0.19
Consensus pattern (19 bp):
AATAAAAAAAAGTTGAAGC
Found at i:20816613 original size:28 final size:28
Alignment explanation
Indices: 20816569--20816674 Score: 95
Period size: 28 Copynumber: 3.6 Consensus size: 28
20816559 TGTAATCCTA
*
20816569 ATTGCAATATACTTCTTTAAATAGTTTT
1 ATTGCAATATACTTCTTAAAATAGTTTT
* **
20816597 ATTGCAATATACCTCTTGCAAAATTATAGCCTT
1 ATTGCAATATACTTCTT---AAA--ATAGTTTT
* *
20816630 ATTGCAATATACTTCTTCAAGTAGTTTT
1 ATTGCAATATACTTCTTAAAATAGTTTT
* *
20816658 ATTGAAATATACATCTT
1 ATTGCAATATACTTCTT
20816675 CCAAGATTAT
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
28 36 0.58
30 2 0.03
31 2 0.03
33 22 0.35
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.43
Consensus pattern (28 bp):
ATTGCAATATACTTCTTAAAATAGTTTT
Found at i:20816667 original size:61 final size:61
Alignment explanation
Indices: 20816569--20816685 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 61
20816559 TGTAATCCTA
* * * *
20816569 ATTGCAATATACTTCTTTAAATAGTTTTATTGCAATATACCTCTTGCAAAATTATAGCCTT
1 ATTGCAATATACTTCTTCAAATAGTTTTATTGAAATATACATCTTCCAAAATTATAGCCTT
* *
20816630 ATTGCAATATACTTCTTCAAGTAGTTTTATTGAAATATACATCTTCCAAGATTATA
1 ATTGCAATATACTTCTTCAAATAGTTTTATTGAAATATACATCTTCCAAAATTATA
20816686 ATTCTCTTAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (61 bp):
ATTGCAATATACTTCTTCAAATAGTTTTATTGAAATATACATCTTCCAAAATTATAGCCTT
Found at i:20817092 original size:81 final size:81
Alignment explanation
Indices: 20816980--20817391 Score: 648
Period size: 81 Copynumber: 5.1 Consensus size: 81
20816970 ACCTATTGGT
* * *
20816980 AGATAATATTTATATTTTTTTTTACCAATCAAAAATTAGTAATTGGTCATTCAATTTATCTCTAA
1 AGATAATATTTATA---TTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAA
20817045 ATAAATCAAAATAATTTAG
63 ATAAATCAAAATAATTTAG
20817064 AGATAATATTTATATTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
1 AGATAATATTTATATTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
20817129 AATCAAAATAATTTAG
66 AATCAAAATAATTTAG
*
20817145 AGATAATATTTATATTTTTGACCAATCATAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
1 AGATAATATTTATATTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
20817210 AATCAAAATAATTTAG
66 AATCAAAATAATTTAG
* *
20817226 AGATAATATTTATATTTTTGACCAATCATAAATTAGTTATTGGTCATCCAATTTATTTCTAAATA
1 AGATAATATTTATATTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
20817291 AATCAAAATAATTTAG
66 AATCAAAATAATTTAG
* * ** **
20817307 AGATAATATTCATATTTTTGACCAATCAAAATTTAACTATTGGTCATTTAATTTATCTCT-AAT-
1 AGATAATATTTATATTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
* * *
20817370 AATTATATTAATTTAG
66 AATCAAAATAATTTAG
20817386 AGATAA
1 AGATAA
20817392 AAGTCAAATT
Statistics
Matches: 312, Mismatches: 16, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
79 19 0.06
80 3 0.01
81 276 0.88
84 14 0.04
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (81 bp):
AGATAATATTTATATTTTTGACCAATCAAAAATTAGTTATTGGTCATCCAATTTATCTCTAAATA
AATCAAAATAATTTAG
Found at i:20817672 original size:9 final size:9
Alignment explanation
Indices: 20817644--20817692 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
20817634 TCATTCAGAG
*
20817644 GCATTCGAA
1 GCATTTGAA
*
20817653 G-ATTGGAA
1 GCATTTGAA
20817661 GCATTTGAA
1 GCATTTGAA
20817670 GCATTTGAA
1 GCATTTGAA
20817679 G-A-TTGAGA
1 GCATTTGA-A
20817687 GCATTT
1 GCATTT
20817693 CAGAGATCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
7 4 0.12
8 10 0.29
9 18 0.53
10 2 0.06
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (9 bp):
GCATTTGAA
Found at i:20817756 original size:23 final size:23
Alignment explanation
Indices: 20817729--20817806 Score: 102
Period size: 23 Copynumber: 3.3 Consensus size: 23
20817719 CTGAAGTGAA
20817729 GATCAAGTAACAACGAAGTTCGT
1 GATCAAGTAACAACGAAGTTCGT
* *
20817752 GATCAAGCAGCAACGAAGTTCGT
1 GATCAAGTAACAACGAAGTTCGT
* *
20817775 GATCAAGATATCAAGCAAAGTTCGT
1 GATCAAG-TAACAA-CGAAGTTCGT
20817800 GATCAAG
1 GATCAAG
20817807 ATACTTTGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 28 0.58
24 4 0.08
25 16 0.33
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (23 bp):
GATCAAGTAACAACGAAGTTCGT
Found at i:20817878 original size:49 final size:50
Alignment explanation
Indices: 20817821--20818035 Score: 308
Period size: 49 Copynumber: 4.3 Consensus size: 50
20817811 TTTGTTTGTT
*
20817821 ATCAAGATTAAGTCGTGAAGACCCTTGAAGCGAAGATCAAGTA-TTCGTG
1 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAAGTAGTTCGTG
* *
20817870 ATCAAGATTAAGTCGTCAAGACCCTTGAAGTGAAGATCAAGT-GTTGGTG
1 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAAGTAGTTCGTG
* * * *
20817919 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGGATATTAAGCGAAGTTCGTG
1 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAA--GTAGTTCGTG
*
20817971 ATCAAGATTAAGTCGTCAAGACCCTTGACGCGAAGATCAAGTAAGTTCGTG
1 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAAGT-AGTTCGTG
*
20818022 ATCAAGACTAAGTC
1 ATCAAGATTAAGTC
20818036 CAAGTTTGTG
Statistics
Matches: 146, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
49 81 0.55
50 1 0.01
51 22 0.15
52 42 0.29
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (50 bp):
ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAAGTAGTTCGTG
Found at i:20818006 original size:101 final size:99
Alignment explanation
Indices: 20817821--20818035 Score: 306
Period size: 101 Copynumber: 2.1 Consensus size: 99
20817811 TTTGTTTGTT
* *
20817821 ATCAAGATTAAGTCGTGAAGACCCTTGAAGCGAAGATCAAGTATTCGTGATCAAGATTAAGTCGT
1 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAAGAATTCGTGATCAAGATTAAGTCGT
* *
20817886 CAAGACCCTTGAAGTGAAGATCAAGT-GTTGGTG
66 CAAGACCCTTGAAGCGAAGATCAAGTAGTTCGTG
* * *
20817919 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGGATATTAAGCGAAGTTCGTGATCAAGATTAAGT
1 ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAA--GAA-TTCGTGATCAAGATTAAGT
*
20817984 CGTCAAGACCCTTGACGCGAAGATCAAGTAAGTTCGTG
63 CGTCAAGACCCTTGAAGCGAAGATCAAGT-AGTTCGTG
*
20818022 ATCAAGACTAAGTC
1 ATCAAGATTAAGTC
20818036 CAAGTTTGTG
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
98 36 0.35
100 2 0.02
101 46 0.45
103 19 0.18
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (99 bp):
ATCAAGATTAAGTCGTCAAGACCCTTGAAGCGAAGATCAAGAATTCGTGATCAAGATTAAGTCGT
CAAGACCCTTGAAGCGAAGATCAAGTAGTTCGTG
Found at i:20826503 original size:2 final size:2
Alignment explanation
Indices: 20826496--20826541 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
20826486 AATAATTACT
20826496 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20826537 TA TA T
1 TA TA T
20826542 TANNNNNNNN
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20851102 original size:18 final size:18
Alignment explanation
Indices: 20851079--20851143 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
20851069 TGACAGTAAC
20851079 AAGAAGGGGAAGAAGAAA
1 AAGAAGGGGAAGAAGAAA
20851097 AAGAA--GG-AGAAG---
1 AAGAAGGGGAAGAAGAAA
*
20851109 GAGAAGGGGAAGAAGAAA
1 AAGAAGGGGAAGAAGAAA
* *
20851127 AAGAAGGAGAAGGAGAA
1 AAGAAGGGGAAGAAGAA
20851144 GGGGAAAAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
12 4 0.11
14 2 0.05
15 10 0.27
16 2 0.05
18 19 0.51
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (18 bp):
AAGAAGGGGAAGAAGAAA
Found at i:20851107 original size:6 final size:6
Alignment explanation
Indices: 20851098--20851145 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
20851088 AAGAAGAAAA
* * **
20851098 AGAAGG AGAAGG AGAAGG GGAAGA AGAAAA AGAAGG AGAAGG AGAAGG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG
20851146 GGAAAAGTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:20851116 original size:30 final size:30
Alignment explanation
Indices: 20851080--20851149 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
20851070 GACAGTAACA
20851080 AGAAGGGGAAGAAGAAAAAGAAGGAGAAGG
1 AGAAGGGGAAGAAGAAAAAGAAGGAGAAGG
20851110 AGAAGGGGAAGAAGAAAAAGAAGGAGAAGG
1 AGAAGGGGAAGAAGAAAAAGAAGGAGAAGG
20851140 AGAAGGGGAA
1 AGAAGGGGAA
20851150 AAGTCAGAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (30 bp):
AGAAGGGGAAGAAGAAAAAGAAGGAGAAGG
Found at i:20851151 original size:24 final size:24
Alignment explanation
Indices: 20851079--20851144 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
20851069 TGACAGTAAC
* * * *
20851079 AAGAAGGGGAAGAAGAAAAAGAAG
1 AAGAAGGAGAAGGAGAAGAAGAAA
* *
20851103 GAGAAGGAGAAGGGGAAGAAGAAA
1 AAGAAGGAGAAGGAGAAGAAGAAA
20851127 AAGAAGGAGAAGGAGAAG
1 AAGAAGGAGAAGGAGAAG
20851145 GGGAAAAGTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (24 bp):
AAGAAGGAGAAGGAGAAGAAGAAA
Found at i:20863397 original size:279 final size:280
Alignment explanation
Indices: 20862885--20863605 Score: 1070
Period size: 279 Copynumber: 2.6 Consensus size: 280
20862875 TAGATGAAAC
* * *
20862885 TTGTAACGACCCAAGCCCAACCACTGACCCAGCAGCTTTTTAGGCATAAATCACGTGACCTTCAA
1 TTGTAACGACCCAAGCCCAACCACTGACCCAACAGCTTTTTGGGCCTAAATCACGTGACCTTCAA
* * * *
20862950 AAGCTTTAGCTCAAGTTGCTAGTAGTGATGAGTTTGAATTGTTATATTGGTCTTAACAATCACAT
66 AAGCTTAAGCTCAAGTTGCTAGTAGTGGTGAGCTTGAATTGTTATATAGGTCTTAACAATCACAT
* *
20863015 GTACATCAGATGTGGGATGTTGGGTATCACAATCCCACCCACTCAAATCCTTGATATCCTCATTA
131 TTACATCAGATGTGGGATGTTGGGTATCACAATCCCACCCACTCAAATCCTTGATATCCTCATCA
** * * *
20863080 AGGTTACACATCATATCCATAGGACCAAGATCTCACCAGAGCAATATGAAAGCTCACATCGGACT
196 AGGCCACACATCACATCCATAGGACAAAGATATCACCAGAGCAATATGAAAGCTCACATCGGACT
20863145 AGCACAGGCTCTGATACCAT
261 AGCACAGGCTCTGATACCAT
* * *
20863165 TTGTAACGACCCAAGCCCAACCACTGGCCCAAC-GACTTTTTGGGCCTAAACCACGTGGCCTTCA
1 TTGTAACGACCCAAGCCCAACCACTGACCCAACAG-CTTTTTGGGCCTAAATCACGTGACCTTCA
* * * * *
20863229 AAA-CTTAAACTTAAGTTGTTAGTAGTGGTGGGCTT-AGATTGTTATATAAGTCTTAACAATCAC
65 AAAGCTTAAGCTCAAGTTGCTAGTAGTGGTGAGCTTGA-ATTGTTATATAGGTCTTAACAATCAC
* * *
20863292 ATTTACATTAGATGTGGGATGTTGGGTATCACAATCCCACTCACTCAAATCCTTGATGTCCTCAT
129 ATTTACATCAGATGTGGGATGTTGGGTATCACAATCCCACCCACTCAAATCCTTGATATCCTCAT
* *
20863357 CAAGGCCACACATCACATCCATAGGGCAAAGATATCACCAGAGCAATGTGAAAGCTCACATCGGA
194 CAAGGCCACACATCACATCCATAGGACAAAGATATCACCAGAGCAATATGAAAGCTCACATCGGA
* *
20863422 CTGGCACAGGCTCTGATATCAT
259 CTAGCACAGGCTCTGATACCAT
* * * *
20863444 TTGTAATGACCTAAGCCCAACCACTGACCCAACAGCTTTTTGGGCCTAAATCACGTAACCCTCAA
1 TTGTAACGACCCAAGCCCAACCACTGACCCAACAGCTTTTTGGGCCTAAATCACGTGACCTTCAA
**
20863509 AAGCTTAAGCTCAAAATGCTAGTAGTGGTGAGCTTGAATTGTTATATAGGTCTTAACAATCACAT
66 AAGCTTAAGCTCAAGTTGCTAGTAGTGGTGAGCTTGAATTGTTATATAGGTCTTAACAATCACAT
* *
20863574 TTACATCAAATGTGAGATGTTGGGTATCACAA
131 TTACATCAGATGTGGGATGTTGGGTATCACAA
20863606 ATGTCACAGC
Statistics
Matches: 390, Mismatches: 46, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
278 1 0.00
279 246 0.63
280 142 0.36
281 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (280 bp):
TTGTAACGACCCAAGCCCAACCACTGACCCAACAGCTTTTTGGGCCTAAATCACGTGACCTTCAA
AAGCTTAAGCTCAAGTTGCTAGTAGTGGTGAGCTTGAATTGTTATATAGGTCTTAACAATCACAT
TTACATCAGATGTGGGATGTTGGGTATCACAATCCCACCCACTCAAATCCTTGATATCCTCATCA
AGGCCACACATCACATCCATAGGACAAAGATATCACCAGAGCAATATGAAAGCTCACATCGGACT
AGCACAGGCTCTGATACCAT
Found at i:20864862 original size:37 final size:38
Alignment explanation
Indices: 20864792--20864863 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
20864782 TCAGCTCATA
* *
20864792 TGCATCCCCCCACATCGTGCACAACCAATATCATCGTG
1 TGCATCCCCCCACATCATGCACAACCAAAATCATCGTG
*
20864830 TGCATCCCCCCACATCATGC-CAAGCAAAATCATC
1 TGCATCCCCCCACATCATGCACAACCAAAATCATC
20864864 ATCCACACTC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 12 0.39
38 19 0.61
ACGTcount: A:0.29, C:0.40, G:0.11, T:0.19
Consensus pattern (38 bp):
TGCATCCCCCCACATCATGCACAACCAAAATCATCGTG
Found at i:20864996 original size:133 final size:132
Alignment explanation
Indices: 20864850--20865110 Score: 414
Period size: 133 Copynumber: 2.0 Consensus size: 132
20864840 CACATCATGC
* * *
20864850 CAAGCAAAATCATCATCCACACTCCCATACCCCGTCATCACCGGCATGTCCATCCCCTCACATCG
1 CAAGCAAAATCATCACCCACACTCCCATACCCCATCATCACCGGCATGTCCATCCCCCCACATCG
* * * *
20864915 TGCACGCGCATGGTTATAATTATCACACAATATCAATTATCAATGCACAACATATATATATATNT
66 TGCACACGCACGATTATAATTATCACACAATATCAACTATCAATGCACAACATATATATATAT-T
20864980 GCA
130 GCA
* * *
20864983 CAAGCAATATCATCACCCACATTCCCATACCCCATCATCACCGGCATGTGCATCCCCCCACATCG
1 CAAGCAAAATCATCACCCACACTCCCATACCCCATCATCACCGGCATGTCCATCCCCCCACATCG
*
20865048 TGCACATGCACGATTATAATTATCACACAATATCAACTATCAATGCACAACATATATATATAT
66 TGCACACGCACGATTATAATTATCACACAATATCAACTATCAATGCACAACATATATATATAT
20865111 ACCAACACAA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 117 1.00
ACGTcount: A:0.34, C:0.32, G:0.09, T:0.25
Consensus pattern (132 bp):
CAAGCAAAATCATCACCCACACTCCCATACCCCATCATCACCGGCATGTCCATCCCCCCACATCG
TGCACACGCACGATTATAATTATCACACAATATCAACTATCAATGCACAACATATATATATATTG
CA
Found at i:20867080 original size:74 final size:74
Alignment explanation
Indices: 20866959--20867108 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 74
20866949 GAGAAGATTG
20866959 ATGGCTTTTTGAGAAATGAAGGACTTATACGCATTGAGAGTGAGCCTACTCTATATGTAAAAAGC
1 ATGGCTTTTTGAGAAATGAAGGACTTATACGCATTGAGAGTGAGCCTACTCTATATGTAAAAAGC
20867024 TCAGATAGC
66 TCAGATAGC
*
20867033 ATGGCTTTTTGAGAAATGAAGGACTTATATGCATTGAGAGTGAGCCTACTCTATATGTAAAAAGC
1 ATGGCTTTTTGAGAAATGAAGGACTTATACGCATTGAGAGTGAGCCTACTCTATATGTAAAAAGC
20867098 TCAGATAGC
66 TCAGATAGC
20867107 AT
1 AT
20867109 TGTGCCACTG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (74 bp):
ATGGCTTTTTGAGAAATGAAGGACTTATACGCATTGAGAGTGAGCCTACTCTATATGTAAAAAGC
TCAGATAGC
Found at i:20874369 original size:26 final size:29
Alignment explanation
Indices: 20874330--20874388 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 29
20874320 CCAATAATTT
20874330 TATATAATATAATT-AATTATATTAA-AAA
1 TATATAATATAATTAAATTA-ATTAATAAA
20874358 TATATAA-A-AATTAAATTAATTAATAAA
1 TATATAATATAATTAAATTAATTAATAAA
20874385 -ATAT
1 TATAT
20874389 TTTTTAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
26 13 0.45
27 9 0.31
28 7 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (29 bp):
TATATAATATAATTAAATTAATTAATAAA
Found at i:20876393 original size:50 final size:50
Alignment explanation
Indices: 20876337--20876434 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
20876327 TATGACCAAT
20876337 AAACATTTCCTTGATTCTTTTTGCCAATTGACACCGATGTTTAGTTTATA
1 AAACATTTCCTTGATTCTTTTTGCCAATTGACACCGATGTTTAGTTTATA
20876387 AAACATTTCCTTGATTCTTTTTGCCAATTGACACCGATGTTTAGTTTA
1 AAACATTTCCTTGATTCTTTTTGCCAATTGACACCGATGTTTAGTTTA
20876435 CTCATTAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (50 bp):
AAACATTTCCTTGATTCTTTTTGCCAATTGACACCGATGTTTAGTTTATA
Found at i:20878883 original size:52 final size:51
Alignment explanation
Indices: 20878823--20878926 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 51
20878813 TATAAGAAAC
20878823 TCGACAGAGACTTGTAAATAAATTAGGACTTTAGGTTAACAACTTAATCTA
1 TCGACAGAGACTTGTAAATAAATTAGGACTTTAGGTTAACAACTTAATCTA
** * * *
20878874 TNCGACAGAGGTTTGTAAATAATTTAGGACTTTAGGTTAGCAATTTAATCTA
1 T-CGACAGAGACTTGTAAATAAATTAGGACTTTAGGTTAACAACTTAATCTA
20878926 T
1 T
20878927 TAAACTAAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 1 0.02
52 46 0.98
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (51 bp):
TCGACAGAGACTTGTAAATAAATTAGGACTTTAGGTTAACAACTTAATCTA
Found at i:20878946 original size:2 final size:2
Alignment explanation
Indices: 20878939--20878979 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
20878929 AACTAAGTTA
20878939 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
20878980 CAATAATTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:20881731 original size:2 final size:2
Alignment explanation
Indices: 20881724--20881776 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
20881714 GTGTGCACAC
20881724 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
20881766 GT GT -T GT GT GT
1 GT GT GT GT GT GT
20881777 TGTTNNNNNN
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
GT
Found at i:20881860 original size:2 final size:2
Alignment explanation
Indices: 20881855--20881912 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
20881845 TGTGTCACAC
20881855 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
*
20881897 GT GT GT TT GT GT GT GT
1 GT GT GT GT GT GT GT GT
20881913 TTTAGCATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
GT
Found at i:20888106 original size:23 final size:23
Alignment explanation
Indices: 20888068--20888116 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
20888058 AACATAGTTG
20888068 TGTCTATTTCATACAAT-ACAAC
1 TGTCTATTTCATACAATCACAAC
*
20888090 TGTCTTATTTCCA-ACAATCATAAC
1 TGTC-TATTT-CATACAATCACAAC
20888114 TGT
1 TGT
20888117 TGGTTTTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
23 10 0.43
24 9 0.39
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (23 bp):
TGTCTATTTCATACAATCACAAC
Found at i:20895023 original size:35 final size:35
Alignment explanation
Indices: 20894977--20895096 Score: 177
Period size: 35 Copynumber: 3.4 Consensus size: 35
20894967 AATATAAAGG
* * *
20894977 TGGTATTCTTACCCCCACAGTGGGCTCTATTCATA
1 TGGTATTCTTACCCCTATAGTGGACTCTATTCATA
* *
20895012 TGGTATTCTTACCCTTATAGTGGACTTTATTCATA
1 TGGTATTCTTACCCCTATAGTGGACTCTATTCATA
*
20895047 TGGTATTCTTACCCCTATAGTGGACTCTATTCATG
1 TGGTATTCTTACCCCTATAGTGGACTCTATTCATA
*
20895082 TGGTATTATTACCCC
1 TGGTATTCTTACCCC
20895097 AATGATGGCC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 76 1.00
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (35 bp):
TGGTATTCTTACCCCTATAGTGGACTCTATTCATA
Found at i:20895122 original size:35 final size:35
Alignment explanation
Indices: 20895083--20895185 Score: 109
Period size: 35 Copynumber: 2.9 Consensus size: 35
20895073 CTATTCATGT
* * *
20895083 GGTATTATTACCCCAATGATGGCCGATAATCAAGG
1 GGTATTCTTACCCCAACGATGGCCAATAATCAAGG
* ** *
20895118 GGTATTCTTACCCCCACGATGGGTAATAATCAAGT
1 GGTATTCTTACCCCAACGATGGCCAATAATCAAGG
* *
20895153 GGTATTCTTATCCCC-ACGTTGGGCAATAATCAA
1 GGTATTCTTA-CCCCAACGATGGCCAATAATCAA
20895186 TATTCATGAG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 54 0.93
36 4 0.07
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (35 bp):
GGTATTCTTACCCCAACGATGGCCAATAATCAAGG
Found at i:20895122 original size:70 final size:70
Alignment explanation
Indices: 20894973--20895134 Score: 175
Period size: 70 Copynumber: 2.3 Consensus size: 70
20894963 TCACAATATA
* * ** *
20894973 AAGGTGGTATTCTTACCCCCACAGTGGGCTCTATTCATATGGTATTCTTACCCTTATAGTGGACT
1 AAGG-GGTATTCTTACCCCCACAGTGGACTCTATTCATATGGTATTATTACCCCAATAGTGGACG
* *
20895038 TTATTC
65 ATAATC
* * * * *
20895044 ATA-TGGTATTCTTACCCCTATAGTGGACTCTATTCATGTGGTATTATTACCCCAAT-GATGGCC
1 A-AGGGGTATTCTTACCCCCACAGTGGACTCTATTCATATGGTATTATTACCCCAATAG-TGGAC
20895107 GATAATC
64 GATAATC
20895114 AAGGGGTATTCTTACCCCCAC
1 AAGGGGTATTCTTACCCCCAC
20895135 GATGGGTAAT
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
69 2 0.03
70 69 0.95
71 1 0.01
72 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (70 bp):
AAGGGGTATTCTTACCCCCACAGTGGACTCTATTCATATGGTATTATTACCCCAATAGTGGACGA
TAATC
Found at i:20896600 original size:16 final size:16
Alignment explanation
Indices: 20896576--20896611 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
20896566 AATTCAATAA
20896576 AAATATCAAAAAAATC
1 AAATATCAAAAAAATC
* *
20896592 AAATTTCAAAATAATC
1 AAATATCAAAAAAATC
20896608 AAAT
1 AAAT
20896612 CTAAATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATATCAAAAAAATC
Found at i:20897491 original size:74 final size:74
Alignment explanation
Indices: 20897396--20897541 Score: 247
Period size: 74 Copynumber: 2.0 Consensus size: 74
20897386 AAACACTACA
* * * *
20897396 AAAAATAGGGTATTACCGACGAAATTTTTCGTTAGTATTTTACATTTTTTATGAAAATATCAATA
1 AAAAACAGGGTATTACCGACGAAATTTTTCGTTAGTATTTTACATTTTTGACGAAAATATCAACA
*
20897461 GAAAATTTC
66 AAAAATTTC
20897470 AAAAACAGGGTATTACCGACGAAATTTTTCGTTAGTATTTTACATTTTTGACGAAAATATCAACA
1 AAAAACAGGGTATTACCGACGAAATTTTTCGTTAGTATTTTACATTTTTGACGAAAATATCAACA
20897535 AAAAATT
66 AAAAATT
20897542 CCAATGGTAG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (74 bp):
AAAAACAGGGTATTACCGACGAAATTTTTCGTTAGTATTTTACATTTTTGACGAAAATATCAACA
AAAAATTTC
Found at i:20898112 original size:25 final size:25
Alignment explanation
Indices: 20898062--20898113 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
20898052 AAAAGTTTCG
* *
20898062 ATGTAAACATCTGATAATAATTCAA
1 ATGTAAACATCTAATAATAATACAA
*
20898087 ATGTAAACATTTAAT-ATAAATACAA
1 ATGTAAACATCTAATAAT-AATACAA
20898112 AT
1 AT
20898114 CTCACTGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (25 bp):
ATGTAAACATCTAATAATAATACAA
Found at i:20898613 original size:2 final size:2
Alignment explanation
Indices: 20898574--20898601 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20898564 GGTAAGCAAC
20898574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20898602 CGAATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20901271 original size:100 final size:99
Alignment explanation
Indices: 20901161--20901375 Score: 333
Period size: 100 Copynumber: 2.2 Consensus size: 99
20901151 TGTTATATAC
* *
20901161 TATTATTAATTTAATTAATTACTTAATTACTTATAACACATTATATTACTCATAACTAGC-ACAT
1 TATTACTAATTTAATTAATTACTTAATTACTTATAACACATTACATTACTCATAACTAGCAAC-T
* **
20901225 TAATAATTCATTTAAATATTTTTTTAAATTAAATAA
65 TAATAATTAATTTAAATA-TTTTAAAAATTAAATAA
*
20901261 TATTACTAATTTAATTAATTGCTTAATTACTTATAACACATTACATTACTCATAACTAGCAACTT
1 TATTACTAATTTAATTAATTACTTAATTACTTATAACACATTACATTACTCATAACTAGCAACTT
* *
20901326 AATAATTAATTTAGATATTTTAAAAATTATATAA
66 AATAATTAATTTAAATATTTTAAAAATTAAATAA
20901360 TATTACTAATTTAATT
1 TATTACTAATTTAATT
20901376 TATTGCCTAA
Statistics
Matches: 106, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
99 30 0.28
100 74 0.70
101 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (99 bp):
TATTACTAATTTAATTAATTACTTAATTACTTATAACACATTACATTACTCATAACTAGCAACTT
AATAATTAATTTAAATATTTTAAAAATTAAATAA
Found at i:20901496 original size:9 final size:9
Alignment explanation
Indices: 20901422--20901496 Score: 55
Period size: 9 Copynumber: 8.3 Consensus size: 9
20901412 TAATCAAATT
*
20901422 ATTTAATTA
1 ATTTAATAA
20901431 ATTTAATGAA
1 ATTTAAT-AA
* * *
20901441 ACCTCAATTA
1 A-TTTAATAA
20901451 ATTTAA-AA
1 ATTTAATAA
*
20901459 ATTAAATAA
1 ATTTAATAA
* *
20901468 TTTTACTAA
1 ATTTAATAA
20901477 ATTTAAT-A
1 ATTTAATAA
20901485 ATTTAATAA
1 ATTTAATAA
20901494 ATT
1 ATT
20901497 GATTAATTAT
Statistics
Matches: 49, Mismatches: 13, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
8 14 0.29
9 27 0.55
10 4 0.08
11 4 0.08
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.44
Consensus pattern (9 bp):
ATTTAATAA
Found at i:20901504 original size:17 final size:17
Alignment explanation
Indices: 20901449--20901496 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
20901439 AAACCTCAAT
20901449 TAATTTAA-AAATTAAA
1 TAATTTAATAAATTAAA
* *
20901465 TAATTTTACTAAATTTAA
1 TAA-TTTAATAAATTAAA
20901483 TAATTTAATAAATT
1 TAATTTAATAAATT
20901497 GATTAATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 3 0.11
17 14 0.52
18 10 0.37
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTTAATAAATTAAA
Found at i:20902069 original size:18 final size:17
Alignment explanation
Indices: 20902043--20902076 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
20902033 TCAATTCTTA
20902043 GTTTCTCTCTCTACTTTT
1 GTTTCTCTCT-TACTTTT
*
20902061 GTTTTTCTCTTACTTT
1 GTTTCTCTCTTACTTT
20902077 CTTTGACTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.06, C:0.24, G:0.06, T:0.65
Consensus pattern (17 bp):
GTTTCTCTCTTACTTTT
Found at i:20907282 original size:49 final size:49
Alignment explanation
Indices: 20907229--20907405 Score: 327
Period size: 49 Copynumber: 3.6 Consensus size: 49
20907219 AAATTTCTTC
* * *
20907229 AAAATTTTTAGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTGT
1 AAAATTTATGGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTCT
20907278 AAAATTTATGGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTCT
1 AAAATTTATGGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTCT
20907327 AAAATTTATGGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTCT
1 AAAATTTATGGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTCT
20907376 AAAATTTATGGAATTTTTTATTTATTATAT
1 AAAATTTATGGAATTTTTTATTTATTATAT
20907406 ATATTTTTGA
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 125 1.00
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (49 bp):
AAAATTTATGGAATTTTTTATTTATTATATTTCTTTAATGATTTTCTCT
Found at i:20911694 original size:40 final size:40
Alignment explanation
Indices: 20911636--20911717 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 40
20911626 GATCTTGTAT
* *
20911636 ATATAATACCGTAGAATAAAAATAT-TCTGAAATAACTTAC
1 ATATAATACCGTAAAATAAAAATATAT-TGAAATAACATAC
*
20911676 ATATAATACCTTAAAATAAAAATATATTGAAATAACATAC
1 ATATAATACCGTAAAATAAAAATATATTGAAATAACATAC
20911716 AT
1 AT
20911718 TAGCTCTAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.54, C:0.11, G:0.05, T:0.30
Consensus pattern (40 bp):
ATATAATACCGTAAAATAAAAATATATTGAAATAACATAC
Found at i:20913230 original size:15 final size:15
Alignment explanation
Indices: 20913210--20913252 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
20913200 CGAGCTTATG
20913210 ATTTAATTAACATAA
1 ATTTAATTAACATAA
* *
20913225 ATTTAAAATACCATAA
1 ATTT-AATTAACATAA
20913241 ATTTAATTAACA
1 ATTTAATTAACA
20913253 CGAGACTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (15 bp):
ATTTAATTAACATAA
Found at i:20915030 original size:2 final size:2
Alignment explanation
Indices: 20915023--20915107 Score: 93
Period size: 2 Copynumber: 42.0 Consensus size: 2
20915013 TAATAAGATC
* **
20915023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT NC AT CAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT
*
20915066 ACT A- AT A- AG AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 A-T AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20915108 TCATTTTAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
1 2 0.03
2 64 0.89
3 6 0.08
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:20923860 original size:208 final size:208
Alignment explanation
Indices: 20923498--20923904 Score: 751
Period size: 208 Copynumber: 2.0 Consensus size: 208
20923488 GTACTTAGTC
20923498 TGAACTGAATTCCTCCTGCTCTAGAAAACAGCATAATCATTTTTGTCCTCAATTATCATTATCTA
1 TGAACTGAATTCCTCCTGCTCTAGAAAACAGCATAATCATTTTTGTCCTCAATTATCATTATCTA
* *
20923563 CAATATCTTAGGTGTACAACATTGACCAATTTATAGCTGATAAGAAACATGCTATGCTGAATTTC
66 CAATAGCTTAGGTGTACAACATTGACCAATTTATAGCTGATAAGAAACATGATATGCTGAATTTC
* *
20923628 CATCTCCTCAATTTTCAGTTTTTACTATGAGACAGTATTATCCAGAAATCATTAGGCATAGGATA
131 CATCTCCTCAATTTTCAATTTTTACTATGAGACAGTATTATCCACAAATCATTAGGCATAGGATA
20923693 ATGAAAACGAAGG
196 ATGAAAACGAAGG
*
20923706 TGAACTGAATTCCTCCTGCTCTTGAAAACAGCATAATCATTTTTGTCCTCAATTATCATTATCTA
1 TGAACTGAATTCCTCCTGCTCTAGAAAACAGCATAATCATTTTTGTCCTCAATTATCATTATCTA
*
20923771 CAATAGCTTAGGTGTACAGCATTGACCAATTTATAGCTGATAAGAAACATGATATGCTGAATTTC
66 CAATAGCTTAGGTGTACAACATTGACCAATTTATAGCTGATAAGAAACATGATATGCTGAATTTC
*
20923836 CATCTCCTCAATTTTCAATTTTTACTATGAGACAGTATTATCTACAAATCATTAGGCATAGGATA
131 CATCTCCTCAATTTTCAATTTTTACTATGAGACAGTATTATCCACAAATCATTAGGCATAGGATA
20923901 ATGA
196 ATGA
20923905 TAAGGAGGGC
Statistics
Matches: 192, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
208 192 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.34
Consensus pattern (208 bp):
TGAACTGAATTCCTCCTGCTCTAGAAAACAGCATAATCATTTTTGTCCTCAATTATCATTATCTA
CAATAGCTTAGGTGTACAACATTGACCAATTTATAGCTGATAAGAAACATGATATGCTGAATTTC
CATCTCCTCAATTTTCAATTTTTACTATGAGACAGTATTATCCACAAATCATTAGGCATAGGATA
ATGAAAACGAAGG
Found at i:20929518 original size:32 final size:33
Alignment explanation
Indices: 20929455--20929518 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
20929445 AATTAACGAA
*
20929455 ATTATTTAAAAATTAAATTAAAATAATAATATT
1 ATTATTTAAAAATTAAATTAAAATAAAAATATT
* *
20929488 ATTA-TTATAAATTATAATT-ATATAAAAATAT
1 ATTATTTAAAAATTA-AATTAAAATAAAAATAT
20929519 ATTTAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (33 bp):
ATTATTTAAAAATTAAATTAAAATAAAAATATT
Found at i:20938916 original size:2 final size:2
Alignment explanation
Indices: 20938870--20938896 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20938860 TATACATAAC
20938870 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
20938897 AACGTATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20942719 original size:2 final size:2
Alignment explanation
Indices: 20942714--20942740 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20942704 GAGAGAAAAC
20942714 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
20942741 TAAAGAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:20944800 original size:21 final size:20
Alignment explanation
Indices: 20944774--20944815 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
20944764 TAATTTAAAA
20944774 TAAAATAACATAAAATTTAAC
1 TAAAATAAC-TAAAATTTAAC
*
20944795 TAAAATAACTTAAA-TTAAC
1 TAAAATAACTAAAATTTAAC
20944814 TA
1 TA
20944816 CTCAACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 9 0.45
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATAACTAAAATTTAAC
Found at i:20948262 original size:19 final size:19
Alignment explanation
Indices: 20948233--20948269 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
20948223 TAATGAAAAA
20948233 TATTTTTTT-AAAATTAAC
1 TATTTTTTTAAAAATTAAC
20948251 TATTTATTTTAAAAATTAA
1 TATTT-TTTTAAAAATTAA
20948270 TAAATTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTTTTTAAAAATTAAC
Found at i:20949210 original size:2 final size:2
Alignment explanation
Indices: 20949203--20949230 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20949193 AACTATTCAG
20949203 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20949231 TAAGCTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20952714 original size:2 final size:2
Alignment explanation
Indices: 20952703--20952800 Score: 136
Period size: 2 Copynumber: 52.0 Consensus size: 2
20952693 AAGATTCAAA
*
20952703 AT AT -T AT AT AT A- AT AT AT AT AT AT -T A- AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
20952741 AT AT AT AT AT AT AN A- AT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20952781 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
20952801 CTCCAATTTC
Statistics
Matches: 87, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
1 6 0.07
2 81 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20960998 original size:12 final size:12
Alignment explanation
Indices: 20960981--20961023 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
20960971 AATCTGATTC
20960981 TTTGTTTATTAA
1 TTTGTTTATTAA
20960993 TTTG-TTACTATAA
1 TTTGTTTA-T-TAA
*
20961006 TTGGTTTATTAA
1 TTTGTTTATTAA
20961018 TTTGTT
1 TTTGTT
20961024 ACTATAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 3 0.12
12 13 0.50
13 7 0.27
14 3 0.12
ACGTcount: A:0.23, C:0.02, G:0.12, T:0.63
Consensus pattern (12 bp):
TTTGTTTATTAA
Found at i:20961018 original size:25 final size:25
Alignment explanation
Indices: 20960984--20961036 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
20960974 CTGATTCTTT
20960984 GTTTATTAATTTGTTACTATAATTG
1 GTTTATTAATTTGTTACTATAATTG
20961009 GTTTATTAATTTGTTACTATAATTG
1 GTTTATTAATTTGTTACTATAATTG
20961034 GTT
1 GTT
20961037 ATGAGTCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (25 bp):
GTTTATTAATTTGTTACTATAATTG
Found at i:20961037 original size:13 final size:13
Alignment explanation
Indices: 20960990--20961037 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
20960980 CTTTGTTTAT
*
20960990 TAATTTGTTACTA
1 TAATTGGTTACTA
20961003 TAATTGGTT--TA
1 TAATTGGTTACTA
*
20961014 TTAATTTGTTACTA
1 -TAATTGGTTACTA
20961028 TAATTGGTTA
1 TAATTGGTTA
20961038 TGAGTCCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
11 2 0.07
12 8 0.28
13 17 0.59
14 2 0.07
ACGTcount: A:0.29, C:0.04, G:0.12, T:0.54
Consensus pattern (13 bp):
TAATTGGTTACTA
Found at i:20963608 original size:88 final size:88
Alignment explanation
Indices: 20963504--20963674 Score: 272
Period size: 88 Copynumber: 1.9 Consensus size: 88
20963494 TCTTATGGCC
* * *
20963504 TTACCATTGTTATAT-AATAAAATTTAAATTTTAATATTTTATTTAAATAAATATATTAATTAAA
1 TTACCATTGTTATATAAAAAAAAATTAAATTTTAATA-TTTATTTAAATAAATATATTAACTAAA
20963568 AATGTCAATAAATTTTTCATGCCA
65 AATGTCAATAAATTTTTCATGCCA
* *
20963592 TTACCATTGTTATATAAAAAAAAATTAAATTTTAATATTTATTTAAATGACTATATTAACTAAAA
1 TTACCATTGTTATATAAAAAAAAATTAAATTTTAATATTTATTTAAATAAATATATTAACTAAAA
*
20963657 ATGTCCATAAATTTTTCA
66 ATGTCAATAAATTTTTCA
20963675 CTATTCATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
88 57 0.75
89 19 0.25
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.44
Consensus pattern (88 bp):
TTACCATTGTTATATAAAAAAAAATTAAATTTTAATATTTATTTAAATAAATATATTAACTAAAA
ATGTCAATAAATTTTTCATGCCA
Found at i:20980862 original size:4 final size:4
Alignment explanation
Indices: 20980853--20980897 Score: 55
Period size: 4 Copynumber: 12.5 Consensus size: 4
20980843 AAAATTTTGG
20980853 TTAT TTAT TTA- TTAT TTA- TTAT TTA- TTA- TTAT TTAT TTA- TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
20980896 TT
1 TT
20980898 TTATATATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 15 0.41
4 22 0.59
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:20980869 original size:7 final size:7
Alignment explanation
Indices: 20980857--20980901 Score: 67
Period size: 7 Copynumber: 6.6 Consensus size: 7
20980847 TTTTGGTTAT
20980857 TTATTTA
1 TTATTTA
20980864 TTATTTA
1 TTATTTA
20980871 TTATTTA
1 TTATTTA
20980878 TTA-TTA
1 TTATTTA
20980884 TTTATTTA
1 -TTATTTA
20980892 TTATTT-
1 TTATTTA
20980898 TTAT
1 TTAT
20980902 ATATACTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 7 0.19
7 26 0.72
8 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTATTTA
Found at i:20981272 original size:11 final size:11
Alignment explanation
Indices: 20981237--20981326 Score: 50
Period size: 11 Copynumber: 8.3 Consensus size: 11
20981227 CTTCCAATTA
20981237 TATTATTTATTAT
1 TATTATTTA-T-T
20981250 TATTATTTATT
1 TATTATTTATT
20981261 TATT-TTTCATTT
1 TATTATTT-A-TT
20981273 TATTA-TTATCT
1 TATTATTTAT-T
*
20981284 T-TTAATT-TT
1 TATTATTTATT
*
20981293 TA-TATTT-TA
1 TATTATTTATT
20981302 TATATATTT-TT
1 TAT-TATTTATT
*
20981313 TATTATTTTTT
1 TATTATTTATT
20981324 TAT
1 TAT
20981327 CTTAATATAA
Statistics
Matches: 65, Mismatches: 3, Indels: 20
0.74 0.03 0.23
Matches are distributed among these distances:
9 9 0.14
10 13 0.20
11 25 0.38
12 9 0.14
13 9 0.14
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTATTTATT
Found at i:20981274 original size:29 final size:26
Alignment explanation
Indices: 20981242--20981322 Score: 76
Period size: 27 Copynumber: 2.9 Consensus size: 26
20981232 AATTATATTA
20981242 TTTATTATTATTATTTATTTATTTTTCAT
1 TTTATTATTATT-TTTA-TTATTTTT-AT
*
20981271 TTTATTATTATCTTTTAATT-TTTATAT
1 TTTATTATTAT-TTTT-ATTATTTTTAT
20981298 TTTA-TATATATTTTTTATTATTTTT
1 TTTATTAT-TA-TTTTTATTATTTTT
20981323 TTATCTTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
26 6 0.13
27 16 0.36
28 5 0.11
29 16 0.36
30 2 0.04
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (26 bp):
TTTATTATTATTTTTATTATTTTTAT
Found at i:20981280 original size:26 final size:26
Alignment explanation
Indices: 20981246--20981316 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
20981236 ATATTATTTA
20981246 TTATTATTATTTATTTATTTTT-CATT
1 TTATTATTATTT-TTTATTTTTACATT
* *
20981272 TTATTATTATCTTTTAATTTTTATATT
1 TTATTATTAT-TTTTTATTTTTACATT
20981299 TTA-TATATATTTTTTATT
1 TTATTAT-TATTTTTTATT
20981317 ATTTTTTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 28 0.72
27 11 0.28
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (26 bp):
TTATTATTATTTTTTATTTTTACATT
Found at i:20981917 original size:23 final size:24
Alignment explanation
Indices: 20981875--20981922 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
20981865 TCTTAGCCGG
*
20981875 CGAATCGCTTCGCCTTCCGTTGGC
1 CGAATCGCTTCGCCTTCCGTCGGC
20981899 CGAATC-CTTC-CCTTCCCGTCGGC
1 CGAATCGCTTCGCCTT-CCGTCGGC
20981922 C
1 C
20981923 CCTCTCTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 12 0.55
24 6 0.27
ACGTcount: A:0.08, C:0.44, G:0.21, T:0.27
Consensus pattern (24 bp):
CGAATCGCTTCGCCTTCCGTCGGC
Found at i:20982196 original size:7 final size:7
Alignment explanation
Indices: 20982184--20982221 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
20982174 ATCCCAATTT
20982184 TTTTTTA
1 TTTTTTA
20982191 TTTTTTA
1 TTTTTTA
20982198 TTTTTTA
1 TTTTTTA
*
20982205 -ATTTTA
1 TTTTTTA
20982211 TTTATTTA
1 TTT-TTTA
20982219 TTT
1 TTT
20982222 AATTTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
6 5 0.19
7 15 0.56
8 7 0.26
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTA
Found at i:20982214 original size:10 final size:10
Alignment explanation
Indices: 20982201--20982259 Score: 72
Period size: 10 Copynumber: 6.3 Consensus size: 10
20982191 TTTTTTATTT
20982201 TTTAATTTTA
1 TTTAATTTTA
20982211 TTT-A-TTTA
1 TTTAATTTTA
*
20982219 TTTAATTTAA
1 TTTAATTTTA
*
20982229 TTTAATTTAA
1 TTTAATTTTA
20982239 TTTAATTTT-
1 TTTAATTTTA
20982248 TTT-ATTTTA
1 TTTAATTTTA
20982257 TTT
1 TTT
20982260 GAGTGTCTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
8 12 0.27
9 8 0.18
10 24 0.55
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTAATTTTA
Found at i:20982220 original size:28 final size:30
Alignment explanation
Indices: 20982187--20982255 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 30
20982177 CCAATTTTTT
*
20982187 TTTATTTTTT-ATTT-TTTAATTTTATTTA
1 TTTATTTTTTAATTTATTTAATTTAATTTA
*
20982215 TTTATTTAATTTAATTTAATTTAATTTAATTTT
1 TTTATTT--TTTAATTT-ATTTAATTTAATTTA
20982248 TTTATTTT
1 TTTATTTT
20982256 ATTTGAGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
28 7 0.21
30 3 0.09
31 5 0.15
33 19 0.56
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (30 bp):
TTTATTTTTTAATTTATTTAATTTAATTTA
Found at i:20987309 original size:56 final size:55
Alignment explanation
Indices: 20987248--20987369 Score: 127
Period size: 55 Copynumber: 2.2 Consensus size: 55
20987238 TTAATTTTTG
* ** * * *
20987248 TCTTGACATTCTTTTTTGTTCAAGGTACAAAATTTAATGAGTTTTTTCATATAAAA
1 TCTTGA-ATTCTTTCTTACTCAAGGGACAAAATTTAATGAGATTTTGCATATAAAA
* ** *
20987304 TCTTGAGTTCTTTCTTACTCAAGGGGTAAAATTTAATGAGATTTTGCATATGAAA
1 TCTTGAATTCTTTCTTACTCAAGGGACAAAATTTAATGAGATTTTGCATATAAAA
* *
20987359 CCTTGAGTTCT
1 TCTTGAATTCT
20987370 AATAAGGAAG
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
55 49 0.89
56 6 0.11
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (55 bp):
TCTTGAATTCTTTCTTACTCAAGGGACAAAATTTAATGAGATTTTGCATATAAAA
Found at i:20989935 original size:2 final size:2
Alignment explanation
Indices: 20989881--20989922 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
20989871 TTTTTCATTA
20989881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20989922 A
1 A
20989923 AGAATTGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20989982 original size:2 final size:2
Alignment explanation
Indices: 20989975--20990014 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
20989965 ATTTTCATTA
20989975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20990015 AGATTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20992990 original size:39 final size:39
Alignment explanation
Indices: 20992757--20992987 Score: 444
Period size: 39 Copynumber: 5.9 Consensus size: 39
20992747 TTAGTGACGA
20992757 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
1 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
20992796 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
1 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
*
20992835 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGATCC
1 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
20992874 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
1 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
*
20992913 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGATCC
1 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
20992952 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGA
1 AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGA
20992988 TCCTTTGCCA
Statistics
Matches: 189, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 189 1.00
ACGTcount: A:0.35, C:0.23, G:0.29, T:0.14
Consensus pattern (39 bp):
AGAAGCCGTGAAAGATCATGCAGATGAGACCTCGGAACC
Found at i:21003522 original size:225 final size:225
Alignment explanation
Indices: 21003075--21003524 Score: 670
Period size: 225 Copynumber: 2.0 Consensus size: 225
21003065 TTTTAATGTA
* * *
21003075 TATTATTTTTTAACAATAATTATTTGAGTTAATGGGTATTAGACTATAGAGTTCGGATTTATCCC
1 TATTATATTTTAACAATAATTATTTAACTTAATGGGTATTAGACTATAGAGTTCGGATTTATCCC
* * * * * *
21003140 GACGCTTCGGTGAAAATCCGTCTCGAACTCCACATCTAAGAAATCCACCCGAAAGAGACAACTCT
66 GACGCTTCGATGAAAATCCATCTCAAACTCCACATCTAAGAAATCCACCCAAAAAAGACAACCCT
*
21003205 TTGCCCTTTTTTAAGTGAAATTCTATTATTAGATCACTTAAAATAATCATTTCATTTTTTATAAT
131 TTGCCCTTTTTTAAGTGAAATTCTATCATTAGATCACTTAAAATAATCATTTCATTTTTTATAAT
*
21003270 AATTATGTTTACATCATGTATTTTTTTATT
196 AATTATATTTACATCATGTATTTTTTTATT
* * *
21003300 TATTATATTTTAACAATGATTATTTAACTTAATGGGTATTGGAGTATAGAGTTCGGATTTATCCC
1 TATTATATTTTAACAATAATTATTTAACTTAATGGGTATTAGACTATAGAGTTCGGATTTATCCC
* * * * * *
21003365 GACGTTTCGATGAAAATTCATCTTAAACTCTACATTTAAGAAATCCACTCAAAAAAGACAACCCT
66 GACGCTTCGATGAAAATCCATCTCAAACTCCACATCTAAGAAATCCACCCAAAAAAGACAACCCT
* *
21003430 TTGCCC-TTTTTAAGTGAAATTCTGTCATTAGATCACTTAAAATAA-CAATTTCATTTTTTATAG
131 TTGCCCTTTTTTAAGTGAAATTCTATCATTAGATCACTTAAAATAATC-ATTTCATTTTTTATAA
21003493 TAATTATATTTACATCATGTATATTTTTTATT
195 TAATTATATTTACATCATGTAT-TTTTTTATT
21003525 ATTTTTTGAG
Statistics
Matches: 201, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
223 1 0.00
224 73 0.36
225 127 0.63
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (225 bp):
TATTATATTTTAACAATAATTATTTAACTTAATGGGTATTAGACTATAGAGTTCGGATTTATCCC
GACGCTTCGATGAAAATCCATCTCAAACTCCACATCTAAGAAATCCACCCAAAAAAGACAACCCT
TTGCCCTTTTTTAAGTGAAATTCTATCATTAGATCACTTAAAATAATCATTTCATTTTTTATAAT
AATTATATTTACATCATGTATTTTTTTATT
Found at i:21007465 original size:2 final size:2
Alignment explanation
Indices: 21007454--21007491 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
21007444 ATCATCGATG
21007454 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21007492 TATCATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21016042 original size:15 final size:15
Alignment explanation
Indices: 21016022--21016072 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
21016012 TGAATTAACA
21016022 TTATAAAATTATAAT
1 TTATAAAATTATAAT
21016037 TTATAAAATTATTAA-
1 TTATAAAATTA-TAAT
*
21016052 TTATAATATATATAACT
1 TTATAAAAT-TATAA-T
21016069 TTAT
1 TTAT
21016073 TTATTTAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 22 0.71
16 5 0.16
17 4 0.13
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TTATAAAATTATAAT
Found at i:21017902 original size:20 final size:20
Alignment explanation
Indices: 21017864--21017903 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
21017854 CACTTGAATA
21017864 AAATCTTTCTTTCTCTCTCT
1 AAATCTTTCTTTCTCTCTCT
21017884 AAATACTTTCTTTCT-TCTCT
1 AAAT-CTTTCTTTCTCTCTCT
21017904 TTCTTCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.55
Consensus pattern (20 bp):
AAATCTTTCTTTCTCTCTCT
Found at i:21032553 original size:63 final size:63
Alignment explanation
Indices: 21032483--21032606 Score: 160
Period size: 63 Copynumber: 2.0 Consensus size: 63
21032473 CGACATCTTT
* * * *
21032483 CTCTCTCAACTCTCTAAACTGTCTCAA-CTCTGCCAACTCTTTATTGAGCAACATCGTCATCAA
1 CTCTCTCAACTCTCTAAACTATAT-AAGCTCTGCCAACTCTCTATTAAGCAACATCGTCATCAA
* * * *
21032546 CTCTCTCAGCTCTCTGAACTATATAAGCTCTGTCAACTCTCTGTTAAGCAACATCGTCATC
1 CTCTCTCAACTCTCTAAACTATATAAGCTCTGCCAACTCTCTATTAAGCAACATCGTCATC
21032607 GGGTTGTGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 2 0.04
63 50 0.96
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (63 bp):
CTCTCTCAACTCTCTAAACTATATAAGCTCTGCCAACTCTCTATTAAGCAACATCGTCATCAA
Found at i:21032994 original size:31 final size:31
Alignment explanation
Indices: 21032952--21033015 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
21032942 GTGTCAGCAT
*
21032952 TGGCGTGTTACAACATTTTACGTTATATGCA
1 TGGCGTATTACAACATTTTACGTTATATGCA
* *
21032983 TGGCGTATTACAATATTTTATGTTATATGCA
1 TGGCGTATTACAACATTTTACGTTATATGCA
21033014 TG
1 TG
21033016 ACGTTATGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (31 bp):
TGGCGTATTACAACATTTTACGTTATATGCA
Found at i:21034530 original size:17 final size:17
Alignment explanation
Indices: 21034508--21034540 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21034498 GAAAAGAGAG
*
21034508 AAGAGAAATAGAATAAC
1 AAGAGAAAGAGAATAAC
21034525 AAGAGAAAGAGAATAA
1 AAGAGAAAGAGAATAA
21034541 GAAAGGAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.09
Consensus pattern (17 bp):
AAGAGAAAGAGAATAAC
Found at i:21034594 original size:16 final size:16
Alignment explanation
Indices: 21034573--21034604 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21034563 GCAGAGCAGA
21034573 AAAAAAAAAGAAAGAG
1 AAAAAAAAAGAAAGAG
*
21034589 AAAAAAAAGGAAAGAG
1 AAAAAAAAAGAAAGAG
21034605 GGAGCATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAGAG
Found at i:21034717 original size:15 final size:17
Alignment explanation
Indices: 21034692--21034723 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
21034682 GCGACAAGGG
21034692 AGAAGAAATAA-GAGAA
1 AGAAGAAATAAGGAGAA
21034708 AGAA-AAATAAGGAGAA
1 AGAAGAAATAAGGAGAA
21034724 TGAGATAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (17 bp):
AGAAGAAATAAGGAGAA
Found at i:21034790 original size:25 final size:25
Alignment explanation
Indices: 21034751--21034848 Score: 72
Period size: 25 Copynumber: 3.9 Consensus size: 25
21034741 CGACGAGGGG
* * *
21034751 GAAGAAAGAAGAAAAAGAAAAAGAA
1 GAAGAAGGAAAAAAAAGAAGAAGAA
* ** *
21034776 GAAGAAGGAAAAAAAGAGCAGCGGCA
1 GAAGAAGGAAAAAAA-AGAAGAAGAA
*
21034802 CAA-AAGGAAAAAAAAGAAGAAGAA
1 GAAGAAGGAAAAAAAAGAAGAAGAA
* * *
21034826 GAAAAACGAAAAAGAAGAGAGAA
1 GAAGAAGGAAAAAAAAGA-AGAA
21034849 TAGCTAAGTA
Statistics
Matches: 55, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
24 8 0.15
25 36 0.65
26 11 0.20
ACGTcount: A:0.68, C:0.05, G:0.27, T:0.00
Consensus pattern (25 bp):
GAAGAAGGAAAAAAAAGAAGAAGAA
Found at i:21034795 original size:58 final size:58
Alignment explanation
Indices: 21034633--21034804 Score: 220
Period size: 58 Copynumber: 3.0 Consensus size: 58
21034623 AGAAGAAAGA
*
21034633 GGGAAGAAATAAGAGAAAGAAAAAGAAGGAGAAGGAGAGAAGGAGCACGGCGACAAGG
1 GGGAAGAAATAAGAGAAAGAAAAAGAAGGAGAAGGAGAAAAGGAGCACGGCGACAAGG
* * * * * *
21034691 GAGAAGAAATAAGAGAAAGAAAAATAAGGAGAATGAGATAAGGAGCACTGCGACGAGG
1 GGGAAGAAATAAGAGAAAGAAAAAGAAGGAGAAGGAGAAAAGGAGCACGGCGACAAGG
* * * * *
21034749 GGGAAGAAAGAAGAAAAAGAAAAAGAAGAAGAAGGAAAAAAAGAGCAGCGGC-ACAA
1 GGGAAGAAATAAGAGAAAGAAAAAGAAGGAGAAGGAGAAAAGGAGCA-CGGCGACAA
21034805 AAGGAAAAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
58 93 0.97
59 3 0.03
ACGTcount: A:0.55, C:0.07, G:0.34, T:0.03
Consensus pattern (58 bp):
GGGAAGAAATAAGAGAAAGAAAAAGAAGGAGAAGGAGAAAAGGAGCACGGCGACAAGG
Found at i:21035070 original size:2 final size:2
Alignment explanation
Indices: 21035051--21035093 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
21035041 TTTTTTTTAA
* *
21035051 AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21035093 A
1 A
21035094 CTATTNTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:21035162 original size:2 final size:2
Alignment explanation
Indices: 21035143--21035185 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
21035133 TTTTTTTTAA
* *
21035143 AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21035185 A
1 A
21035186 CATGTTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:21035165 original size:92 final size:91
Alignment explanation
Indices: 21035008--21035186 Score: 349
Period size: 92 Copynumber: 2.0 Consensus size: 91
21034998 ATGCCTTAGG
21035008 TTATTTGTGCTTGTGATAAGGATTTTATATCTATTTTTTTTAAATATAAATATAAATATATATAT
1 TTATTTGTGCTTGTGATAAGGATTTTATATCTATTTTTTTTAAATATAAATATAAATATATATAT
21035073 ATATATATATATATATATATACTATT
66 ATATATATATATATATATATACTATT
21035099 NTTATTTGTGCTTGTGATAAGGATTTTATATCTATTTTTTTTAAATATAAATATAAATATATATA
1 -TTATTTGTGCTTGTGATAAGGATTTTATATCTATTTTTTTTAAATATAAATATAAATATATATA
21035164 TATATATATATATATATATATAC
65 TATATATATATATATATATATAC
21035187 ATGTTTTTAA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (91 bp):
TTATTTGTGCTTGTGATAAGGATTTTATATCTATTTTTTTTAAATATAAATATAAATATATATAT
ATATATATATATATATATATACTATT
Found at i:21035543 original size:60 final size:60
Alignment explanation
Indices: 21035427--21035662 Score: 295
Period size: 60 Copynumber: 4.0 Consensus size: 60
21035417 ATTTGATTTT
* * * *
21035427 AAAGGGGGACCTGAAGCCCCGATTCATA--TGGTGGCGTGGGCAGTTCCCACGAGTAGGC
1 AAAGGGGGACCTGAAGGCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
* *
21035485 AAAGGGGGACCTGAAGGTCCGATTTATATTTGGTGACGTGGGTAGTTTCCACGAGTAGGC
1 AAAGGGGGACCTGAAGGCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
*
21035545 AAAGGGGGACCTGAA-GCCCTGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGTA
1 AAAGGGGGACCTGAAGGCCC-GATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGG-C
* * ** *
21035606 AAAGGGGGACCTGAA-GCCCTAATTTATA--TGGTGGCGTGGACAGTTCCCATGAGTAGG
1 AAAGGGGGACCTGAAGGCCC-GATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGG
21035663 TGATGATGTC
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
58 25 0.16
59 28 0.17
60 80 0.50
61 27 0.17
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.23
Consensus pattern (60 bp):
AAAGGGGGACCTGAAGGCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
Found at i:21039475 original size:117 final size:118
Alignment explanation
Indices: 21039254--21039520 Score: 335
Period size: 117 Copynumber: 2.3 Consensus size: 118
21039244 NNNNNNNNNN
* * * * *
21039254 GGCA-GCCCCATCTTGTGGTGAGACGTTGAGTGGAAGCAGATAGTTGGCGTGACACGTTGAGTGC
1 GGCACGCCCCATATTGTGGTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGACTGC
* * * *
21039318 ATGCAGATTTCTATGGTGACACGTTGACTTCCTGCTGTATTGTGGGGTGACAT
66 ATGCAGATTTCTATGGTGACAAGCTGACTTCCTGCAGTATTGTGGGGTGACAC
* * *
21039371 GGCATGCTCCA-ATTGTGGTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGACTTC
1 GGCACGCCCCATATTGTGGTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGACTGC
* * *
21039435 TTGCTA-ATTTCTGTGAG-GACAAGCTGACTTCTTGCAGTATTGTGGGGTGACAC
66 ATGC-AGATTTCTATG-GTGACAAGCTGACTTCCTGCAGTATTGTGGGGTGACAC
* *
21039488 GGCACGCCCCATCTTATGGTGACACGCTGAGTG
1 GGCACGCCCCATATTGTGGTGACACGCTGAGTG
21039521 CATGTAGATT
Statistics
Matches: 128, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
117 102 0.80
118 26 0.20
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.28
Consensus pattern (118 bp):
GGCACGCCCCATATTGTGGTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGACTGC
ATGCAGATTTCTATGGTGACAAGCTGACTTCCTGCAGTATTGTGGGGTGACAC
Found at i:21039532 original size:87 final size:86
Alignment explanation
Indices: 21039419--21039606 Score: 263
Period size: 87 Copynumber: 2.2 Consensus size: 86
21039409 GATAGTTGGC
* * *
21039419 GTGACACGCTGACTTCTTGCTAATTTCTGTGAG-GACAAGCTGACTTCTTGCAGTATTGTGGGGT
1 GTGACACGCTGAGTGCATGCTAATTTCTGTG-GTGACAAGCTGACTTCTTGCAGTATTGTGGGGT
* *
21039483 GACACGGCACGCCCCATCTTATG
65 GACACGACACGCCCCA-ATTATG
* * *
21039506 GTGACACGCTGAGTGCATG-TAGATTTCTGTGGTGACATGTTGACTTCTTGCTGTATTGTGGGGT
1 GTGACACGCTGAGTGCATGCTA-ATTTCTGTGGTGACAAGCTGACTTCTTGCAGTATTGTGGGGT
21039570 GACACGACACGCCCCAATTATG
65 GACACGACACGCCCCAATTATG
21039592 GTGACACGCTGAGTG
1 GTGACACGCTGAGTG
21039607 GAAGCAAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
86 23 0.25
87 68 0.75
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.30
Consensus pattern (86 bp):
GTGACACGCTGAGTGCATGCTAATTTCTGTGGTGACAAGCTGACTTCTTGCAGTATTGTGGGGTG
ACACGACACGCCCCAATTATG
Found at i:21039652 original size:204 final size:204
Alignment explanation
Indices: 21039302--21039733 Score: 603
Period size: 204 Copynumber: 2.1 Consensus size: 204
21039292 GATAGTTGGC
21039302 GTGACACGTTGAGTGCATGCAGATTTCTATGGTGACACGTTGACTTCCTGCTGTATTGTGGGGTG
1 GTGACACGTTGAGTGCATGCAGATTTCTATGGTGACACGTTGACTTCCTGCTGTATTGTGGGGTG
* * * * * * *
21039367 ACATGGCATGCTCCAATTGTGGTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAC
66 ACACGACACGCCCCAATTATGGTGACACGCTGAGTGGAAGCAAATAGTTGACGTGACACGCTGAC
* * *
21039432 TTCTTGCTAATTTCTGTGAGGACAAGCTGACTTCTTGCAGTATTGTGGGGTGACACGGCACGCCC
131 TTCTTACTAATTTCTGTGAGGACAAGCTAACTTCTTACAGTATTGTGGGGTGACACGGCACGCCC
21039497 CATCTTATG
196 CATCTTATG
* * * * *
21039506 GTGACACGCTGAGTGCATGTAGATTTCTGTGGTGACATGTTGACTTCTTGCTGTATTGTGGGGTG
1 GTGACACGTTGAGTGCATGCAGATTTCTATGGTGACACGTTGACTTCCTGCTGTATTGTGGGGTG
* *
21039571 ACACGACACGCCCCAATTATGGTGACACGCTGAGTGGAAGCAAATAGTTGATGTGACACGTTGAC
66 ACACGACACGCCCCAATTATGGTGACACGCTGAGTGGAAGCAAATAGTTGACGTGACACGCTGAC
* * * * * * *
21039636 TTTTTACTGATTTCTGTTATGACACGCTAAGTTCTTACAGTATTGTGGGGTGACACGGCACTCCC
131 TTCTTACTAATTTCTGTGAGGACAAGCTAACTTCTTACAGTATTGTGGGGTGACACGGCACGCCC
* *
21039701 CATTTTGTG
196 CATCTTATG
* * *
21039710 GTGACATGTTGAGTGGAAGCAGAT
1 GTGACACGTTGAGTGCATGCAGAT
21039734 AGTTGGCGTG
Statistics
Matches: 197, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
204 197 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (204 bp):
GTGACACGTTGAGTGCATGCAGATTTCTATGGTGACACGTTGACTTCCTGCTGTATTGTGGGGTG
ACACGACACGCCCCAATTATGGTGACACGCTGAGTGGAAGCAAATAGTTGACGTGACACGCTGAC
TTCTTACTAATTTCTGTGAGGACAAGCTAACTTCTTACAGTATTGTGGGGTGACACGGCACGCCC
CATCTTATG
Found at i:21042120 original size:145 final size:145
Alignment explanation
Indices: 21041970--21042265 Score: 387
Period size: 145 Copynumber: 2.0 Consensus size: 145
21041960 ACAACTGATT
** * * * *
21041970 TTACCGACTGGTCATTAGCACTAAT-CGTATGAGGAGGACCTCTCAGTGGTTGAGGAGCTGTCGT
1 TTACCGACTCCTCATTAGCA-TAATGAGTATAAGGAGGACCTATCAGCGGTTGAGGAGCTGTCGT
* *
21042034 CGCATGGTCCAACTGCAAACACAAATATGTTATTCGATAATCACATATGGAATTGTTGAACACAA
65 CGCATAGTCCAACTGCAAACACAAATATGTTATTCGATAATCACATATGAAATTGTTGAACACAA
*
21042099 ACCGTTATAATCGTCC
130 ACCGTTATAACCGTCC
* ** * * * *
21042115 TTACCGGCTCCTTGTTAGCATTATGAGTCTAAGGAGGACCTATCTGCGGTTGTGGAGCTGTCGTC
1 TTACCGACTCCTCATTAGCATAATGAGTATAAGGAGGACCTATCAGCGGTTGAGGAGCTGTCGTC
* * *
21042180 GCATAGTCCAACTGCAAATATAGATATGTTATTCGATAATCACATATGAAATTGTTGAACACAAA
66 GCATAGTCCAACTGCAAACACAAATATGTTATTCGATAATCACATATGAAATTGTTGAACACAAA
* *
21042245 CCTTTATAACCGTCT
131 CCGTTATAACCGTCC
21042260 TTACCG
1 TTACCG
21042266 GCTCTTCAAT
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
144 3 0.02
145 126 0.98
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (145 bp):
TTACCGACTCCTCATTAGCATAATGAGTATAAGGAGGACCTATCAGCGGTTGAGGAGCTGTCGTC
GCATAGTCCAACTGCAAACACAAATATGTTATTCGATAATCACATATGAAATTGTTGAACACAAA
CCGTTATAACCGTCC
Found at i:21042266 original size:145 final size:145
Alignment explanation
Indices: 21042001--21042269 Score: 430
Period size: 145 Copynumber: 1.9 Consensus size: 145
21041991 TAATCGTATG
* * *
21042001 AGGAGGACCTCTCAGTGGTTGAGGAGCTGTCGTCGCATGGTCCAACTGCAAACACAAATATGTTA
1 AGGAGGACCTATCAGCGGTTGAGGAGCTGTCGTCGCATAGTCCAACTGCAAACACAAATATGTTA
* *
21042066 TTCGATAATCACATATGGAATTGTTGAACACAAACCGTTATAATCGTCCTTACCGGCTCCTTGTT
66 TTCGATAATCACATATGAAATTGTTGAACACAAACCGTTATAACCGTCCTTACCGGCTCCTTGTT
21042131 AGCATTATGAGTCTA
131 AGCATTATGAGTCTA
* * * * *
21042146 AGGAGGACCTATCTGCGGTTGTGGAGCTGTCGTCGCATAGTCCAACTGCAAATATAGATATGTTA
1 AGGAGGACCTATCAGCGGTTGAGGAGCTGTCGTCGCATAGTCCAACTGCAAACACAAATATGTTA
* *
21042211 TTCGATAATCACATATGAAATTGTTGAACACAAACCTTTATAACCGTCTTTACCGGCTC
66 TTCGATAATCACATATGAAATTGTTGAACACAAACCGTTATAACCGTCCTTACCGGCTC
21042270 TTCAATGCCA
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
145 112 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (145 bp):
AGGAGGACCTATCAGCGGTTGAGGAGCTGTCGTCGCATAGTCCAACTGCAAACACAAATATGTTA
TTCGATAATCACATATGAAATTGTTGAACACAAACCGTTATAACCGTCCTTACCGGCTCCTTGTT
AGCATTATGAGTCTA
Found at i:21043694 original size:31 final size:31
Alignment explanation
Indices: 21043658--21043826 Score: 223
Period size: 31 Copynumber: 5.5 Consensus size: 31
21043648 GTTAACCCAT
*
21043658 AATGTGGTAACACGCCATGCATATAACGTAT
1 AATGTGGTAACACGCCATGCATATAACGTAA
21043689 AATGTGGTAACACGCCATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* * *
21043720 AATGTTGTAACACGCAATGCATATAATGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
*
21043751 AATGTGGTAACACGCTATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* * * * *
21043782 AATTTCGTAACACGCCATACGTATCAA-GTCA
1 AATGTGGTAACACGCCATGCATAT-AACGTAA
*
21043813 AATGTTGTAACACG
1 AATGTGGTAACACG
21043827 ACAACGCTTA
Statistics
Matches: 122, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
31 120 0.98
32 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (31 bp):
AATGTGGTAACACGCCATGCATATAACGTAA
Found at i:21043816 original size:93 final size:93
Alignment explanation
Indices: 21043658--21043826 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
21043648 GTTAACCCAT
* * *
21043658 AATGTGGTAACACGCCATGCATATAACGTATAATGTGGTAACACGCCATGCATATAACGTAAAAT
1 AATGTGGTAACACGCCATGCATATAACGTAAAATGTCGTAACACGCCATACATATAACGTAAAAT
21043723 GTTGTAACACGCAATGCATATAATGTAA
66 GTTGTAACACGCAATGCATATAATGTAA
* * * *
21043751 AATGTGGTAACACGCTATGCATATAACGTAAAATTTCGTAACACGCCATACGTATCAA-GTCAAA
1 AATGTGGTAACACGCCATGCATATAACGTAAAATGTCGTAACACGCCATACATAT-AACGTAAAA
21043815 TGTTGTAACACG
65 TGTTGTAACACG
21043827 ACAACGCTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
93 66 0.97
94 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (93 bp):
AATGTGGTAACACGCCATGCATATAACGTAAAATGTCGTAACACGCCATACATATAACGTAAAAT
GTTGTAACACGCAATGCATATAATGTAA
Found at i:21051119 original size:47 final size:47
Alignment explanation
Indices: 21051053--21051310 Score: 311
Period size: 47 Copynumber: 5.5 Consensus size: 47
21051043 TGTCACGGAT
* * * *
21051053 CTCCATGGAGTCTGACAAACTCTGAACACTGACGTGTCACAGATTCC
1 CTCCATGGCGTGTCACAAACTCTGAACACTGGCGTGTCACAGATTCC
* * ** *
21051100 CTCCATGACGTGTCACAAACTCTGAACTCTGGCGTGTCGTAGATTAC
1 CTCCATGGCGTGTCACAAACTCTGAACACTGGCGTGTCACAGATTCC
* *
21051147 CTCCATGGCGTGTCACGAACTCTGAACACTGGCGTGTCATAGATTCC
1 CTCCATGGCGTGTCACAAACTCTGAACACTGGCGTGTCACAGATTCC
* * *
21051194 CTCCATGGCGTGTCA-AGAACTTTGAAGACTGGCGTGTCACAAATTCC
1 CTCCATGGCGTGTCACA-AACTCTGAACACTGGCGTGTCACAGATTCC
* * ** * *
21051241 CTCCATAGCGTGTCACCAACTCTGAATGCTGGCGTGTCACACATTCT
1 CTCCATGGCGTGTCACAAACTCTGAACACTGGCGTGTCACAGATTCC
*
21051288 CACCATGGCGTGTCACAAACTCT
1 CTCCATGGCGTGTCACAAACTCT
21051311 AAACCCTACC
Statistics
Matches: 180, Mismatches: 29, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
CTCCATGGCGTGTCACAAACTCTGAACACTGGCGTGTCACAGATTCC
Found at i:21051326 original size:94 final size:93
Alignment explanation
Indices: 21051018--21051329 Score: 306
Period size: 94 Copynumber: 3.4 Consensus size: 93
21051008 TTGCCATGCT
* * * * *
21051018 GTGTCACACACTCTAAACCCTACCGTGTCACGGA-T-CTCCATGGAGTCTGACAAACTCTGAACA
1 GTGTCACAAACTCTAAACCCTACCGTGTCACAGATTCCTCCATGGCGTGTCACAAACTCTGAACA
* *
21051081 CTGACGTGTCACAGATTCCCTCCATGAC
66 CTGGCGTGTCACAGATTCCCTCCATGGC
* * ** ** *
21051109 GTGTCACAAACTCTGAACTCTGGCGTGTCGTAGATTACCTCCATGGCGTGTCACGAACTCTGAAC
1 GTGTCACAAACTCTAAACCCTACCGTGTCACAGATT-CCTCCATGGCGTGTCACAAACTCTGAAC
*
21051174 ACTGGCGTGTCATAGATTCCCTCCATGGC
65 ACTGGCGTGTCACAGATTCCCTCCATGGC
* * ** ** * * *
21051203 GTGTCA-AGAACTTTGAAGACTGGCGTGTCACAAATTCCCTCCATAGCGTGTCACCAACTCTGAA
1 GTGTCACA-AACTCTAAACCCTACCGTGTCACAGATT-CCTCCATGGCGTGTCACAAACTCTGAA
** * * *
21051267 TGCTGGCGTGTCACACATTCTCACCATGGC
64 CACTGGCGTGTCACAGATTCCCTCCATGGC
*
21051297 GTGTCACAAACTCTAAACCCTACCATGTCACAG
1 GTGTCACAAACTCTAAACCCTACCGTGTCACAG
21051330 CCGTGTCACA
Statistics
Matches: 178, Mismatches: 38, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
91 26 0.15
92 1 0.01
93 1 0.01
94 149 0.84
95 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (93 bp):
GTGTCACAAACTCTAAACCCTACCGTGTCACAGATTCCTCCATGGCGTGTCACAAACTCTGAACA
CTGGCGTGTCACAGATTCCCTCCATGGC
Found at i:21051326 original size:141 final size:138
Alignment explanation
Indices: 21051018--21051329 Score: 344
Period size: 141 Copynumber: 2.2 Consensus size: 138
21051008 TTGCCATGCT
* * *
21051018 GTGTCACACACTCTAAACCCTACCGTGTCACGGATCTCCATGGAGTCTGACAAACTCTGAACACT
1 GTGTCACAAACTCTAAACCCTACCGTGTCACAGATCTCCATGGAGTCTCACAAACTCTGAACACT
* ** *
21051083 GACGTGTCACAGATTCCCTCCATGACGTGTCACAAACTCTGAACTCTGGCGTGTCGTAGATTACC
66 GACGTGTCACAAATTCCCTCCATGACGTGTCACAAACTCTGAACTCTGGCGTGTCACACATTACC
*
21051148 TCCATGGC
131 ACCATGGC
* * * ** * * * *
21051156 GTGTCACGAACTCTGAACACTGGCGTGTCATAGATTCCCTCCATGGCGTGTCA-AGAACTTTGAA
1 GTGTCACAAACTCTAAACCCTACCGTGTCACAGA-T--CTCCATGGAGTCTCACA-AACTCTGAA
* * *
21051220 GACTGGCGTGTCACAAATTCCCTCCAT-AGCGTGTCACCAACTCTGAA-TGCTGGCGTGTCACAC
62 CACTGACGTGTCACAAATTCCCTCCATGA-CGTGTCACAAACTCTGAACT-CTGGCGTGTCACAC
21051283 ATT-CTCACCATGGC
125 ATTAC-CACCATGGC
*
21051297 GTGTCACAAACTCTAAACCCTACCATGTCACAG
1 GTGTCACAAACTCTAAACCCTACCGTGTCACAG
21051330 CCGTGTCACA
Statistics
Matches: 140, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
138 26 0.19
139 1 0.01
140 4 0.03
141 109 0.78
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (138 bp):
GTGTCACAAACTCTAAACCCTACCGTGTCACAGATCTCCATGGAGTCTCACAAACTCTGAACACT
GACGTGTCACAAATTCCCTCCATGACGTGTCACAAACTCTGAACTCTGGCGTGTCACACATTACC
ACCATGGC
Found at i:21051397 original size:58 final size:58
Alignment explanation
Indices: 21051277--21051397 Score: 127
Period size: 58 Copynumber: 2.1 Consensus size: 58
21051267 TGCTGGCGTG
* * * ** * *
21051277 TCACACATTCTCACCATGGCGTGTCACAAACTCTAAACCCTACCATGTCACAGCCGTG
1 TCACACATTCCCAACATGGCGTGTCACAAACTCTAAACCATACCATACCACAACCGTC
* * * *
21051335 TCACACATTCCCAACAT-GCAGTTTCACAAACTCTAAACCATGCCCTACCACAACTGTC
1 TCACACATTCCCAACATGGC-GTGTCACAAACTCTAAACCATACCATACCACAACCGTC
21051393 TCACA
1 TCACA
21051398 TATGGCCTGT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 2 0.04
58 49 0.96
ACGTcount: A:0.31, C:0.37, G:0.10, T:0.22
Consensus pattern (58 bp):
TCACACATTCCCAACATGGCGTGTCACAAACTCTAAACCATACCATACCACAACCGTC
Found at i:21053725 original size:25 final size:24
Alignment explanation
Indices: 21053653--21053725 Score: 94
Period size: 25 Copynumber: 3.0 Consensus size: 24
21053643 TCTTTTGTTT
21053653 CTTGCCTTCTTCTCCTTT-TTCTTCC
1 CTTGCCTTCTTCT-CTTTCTTC-TCC
* *
21053678 CTTGCGTTCTTCTCCTTCTTCTCC
1 CTTGCCTTCTTCTCTTTCTTCTCC
21053702 CTTTGCCTTCTTCTCTTTCTTCTC
1 C-TTGCCTTCTTCTCTTTCTTCTC
21053726 ATTGTCCGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.00, C:0.40, G:0.05, T:0.55
Consensus pattern (24 bp):
CTTGCCTTCTTCTCTTTCTTCTCC
Found at i:21066041 original size:24 final size:25
Alignment explanation
Indices: 21066012--21066064 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
21066002 TTTATATTTA
*
21066012 TATTTTAAATCAAATAATTT-TTTT
1 TATTTTAAATCAAATAATTTCTTAT
*
21066036 TATTTTAAATTAAATAATTTCTTAT
1 TATTTTAAATCAAATAATTTCTTAT
21066061 TATT
1 TATT
21066065 AATCATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTTTAAATCAAATAATTTCTTAT
Found at i:21066141 original size:10 final size:9
Alignment explanation
Indices: 21066122--21066175 Score: 55
Period size: 8 Copynumber: 6.3 Consensus size: 9
21066112 TACTGACATG
21066122 ATATAT-TA
1 ATATATATA
21066130 ATATATTATA
1 ATATA-TATA
21066140 AT-TA-ATA
1 ATATATATA
21066147 ATA-ATATA
1 ATATATATA
21066155 ATATAT-TA
1 ATATATATA
21066163 ATATATAATA
1 ATATAT-ATA
21066173 ATA
1 ATA
21066176 GATGATAACG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 6 0.15
8 19 0.49
9 5 0.13
10 9 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATATA
Found at i:21066146 original size:33 final size:33
Alignment explanation
Indices: 21066117--21066215 Score: 92
Period size: 33 Copynumber: 2.9 Consensus size: 33
21066107 CATAATACTG
* *
21066117 ACATGATATATTAATATATTATAATTAATAATA
1 ACATAATATATTAATATATAATAATTAATAATA
* *
21066150 ATATAATATATTAATATATAATAA-TAGATGATA
1 ACATAATATATTAATATATAATAATTA-ATAATA
* *
21066183 ACGTAATAAATTAATTTAATATAATAATATAAT
1 ACATAATATATTAA--T-ATATAATAAT-TAAT
21066216 TATATGATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
32 2 0.04
33 37 0.70
35 1 0.02
36 9 0.17
37 2 0.04
38 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (33 bp):
ACATAATATATTAATATATAATAATTAATAATA
Found at i:21066153 original size:20 final size:20
Alignment explanation
Indices: 21066122--21066172 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
21066112 TACTGACATG
*
21066122 ATATATTAATATATTATAATTA
1 ATATA-TAATATAATAT-ATTA
21066144 ATA-ATAATATAATATATTA
1 ATATATAATATAATATATTA
21066163 ATATATAATA
1 ATATATAATA
21066173 ATAGATGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 7 0.26
20 16 0.59
21 1 0.04
22 3 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATAATATAATATATTA
Found at i:21066164 original size:23 final size:25
Alignment explanation
Indices: 21066128--21066175 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
21066118 CATGATATAT
21066128 TAATATATTATAAT-TAATAATAATA
1 TAATATATTATAATAT-ATAATAATA
21066153 TAATATA-T-TAATATATAATAATA
1 TAATATATTATAATATATAATAATA
21066176 GATGATAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 13 0.59
24 2 0.09
25 7 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATATATTATAATATATAATAATA
Found at i:21086845 original size:37 final size:37
Alignment explanation
Indices: 21086804--21086879 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
21086794 TAAGAGATAG
* * *
21086804 AATATAATATGTATTATATGATAGTAAAATTCATATT
1 AATATAATATATACTATATAATAGTAAAATTCATATT
*
21086841 AATATAATATATACTATATAATAGTTAAATTCATATT
1 AATATAATATATACTATATAATAGTAAAATTCATATT
21086878 AA
1 AA
21086880 AGTTGATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (37 bp):
AATATAATATATACTATATAATAGTAAAATTCATATT
Found at i:21089753 original size:31 final size:31
Alignment explanation
Indices: 21089693--21089768 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
21089683 CACGTTATAA
* *
21089693 GAATTAAATTAAATAAAAATGTACAATTTAT
1 GAATTAAATTGAATAAAAATGTAAAATTTAT
21089724 GAATTAAATTGAAT-AAAATCG-AAATATTTAT
1 GAATTAAATTGAATAAAAAT-GTAAA-ATTTAT
*
21089755 GAACTAAATTGAAT
1 GAATTAAATTGAAT
21089769 TTAAAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
30 7 0.17
31 33 0.82
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (31 bp):
GAATTAAATTGAATAAAAATGTAAAATTTAT
Found at i:21107179 original size:34 final size:34
Alignment explanation
Indices: 21107141--21107214 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
21107131 ACGCTAATGT
* *
21107141 CAAAG-TTTCAGCATAAGATGTTACATGCCAAGGC
1 CAAAGCTTT-AGCACAAGATGTTACATGCCAAAGC
* * *
21107175 CAAAGCTTTATCACCAGATGTTACTTGCCAAAGC
1 CAAAGCTTTAGCACAAGATGTTACATGCCAAAGC
21107209 CAAAGC
1 CAAAGC
21107215 AGAAGATGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (34 bp):
CAAAGCTTTAGCACAAGATGTTACATGCCAAAGC
Found at i:21107406 original size:132 final size:132
Alignment explanation
Indices: 21107169--21107555 Score: 457
Period size: 132 Copynumber: 3.0 Consensus size: 132
21107159 TGTTACATGC
* * * * * * *
21107169 CAAGGCCAAAGCTTTATCACCAGATGTTACTTGC-C-AAAGCCAAAGCAGAAGATGTTACA---C
1 CAAGGCCAAAACTTCAGCACTACATGTTACATGCACTAAAGCCAAAGCAGAAGATATTACACGCC
* * * * * * * *
21107229 -A--TCAAAACTTTAGTAGCAAATATTACATGCAAAGGTTAAAACTTCAGCACCAAATGTTACAC
66 AAGGTCAAAGCTTCAGTACCAGATGTTACATGCCAAGGTCAAAGCTTCAGCACCAAATGTTACAC
21107291 AT
131 AT
* * *
21107293 CAAGGCCAAAACTTCAGCACTACATGTTACATGCACTTAAGCCAAAGCAGAAGATGTTACAGGCC
1 CAAGGCCAAAACTTCAGCACTACATGTTACATGCACTAAAGCCAAAGCAGAAGATATTACACGCC
* * **
21107358 AAGGTTAACGCTTCAGTACCAGATGTTACATGCCAAGGTCAAAGCTTCAGCATTAAATGTTACAC
66 AAGGTCAAAGCTTCAGTACCAGATGTTACATGCCAAGGTCAAAGCTTCAGCACCAAATGTTACAC
21107423 AT
131 AT
* * * *
21107425 CAAGGTCAAAACTTTAGCACTATATGTTACGTGCACTAAAGCCAAAGCAGAAGATATTACACGCC
1 CAAGGCCAAAACTTCAGCACTACATGTTACATGCACTAAAGCCAAAGCAGAAGATATTACACGCC
* * *
21107490 AAGGTCAAAGCTTCAGTACTAGATGTTACATGCCAAGGTCAAAGCTTCGGCACCAGATGTTACAC
66 AAGGTCAAAGCTTCAGTACCAGATGTTACATGCCAAGGTCAAAGCTTCAGCACCAAATGTTACAC
21107555 A
131 A
21107556 CCAAAGCTTC
Statistics
Matches: 222, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
124 28 0.13
125 1 0.00
126 23 0.10
129 1 0.00
130 1 0.00
132 168 0.76
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (132 bp):
CAAGGCCAAAACTTCAGCACTACATGTTACATGCACTAAAGCCAAAGCAGAAGATATTACACGCC
AAGGTCAAAGCTTCAGTACCAGATGTTACATGCCAAGGTCAAAGCTTCAGCACCAAATGTTACAC
AT
Found at i:21107418 original size:34 final size:34
Alignment explanation
Indices: 21107251--21107553 Score: 173
Period size: 34 Copynumber: 9.1 Consensus size: 34
21107241 GTAGCAAATA
* * * * *
21107251 TTACATGCAAAGGTTAAAACTTCAGCACCAAATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
*** * * *
21107285 TTACACATCAAGGCCAAAACTTCAGCACTACATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
*
21107319 TTACATGCACTTAA-GCCAAAG---CAG-A--AGATG
1 TTACATGC-C--AAGGTCAAAGCTTCAGCACTAGATG
* * * * *
21107349 TTACAGGCCAAGGTTAACGCTTCAGTACCAGATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
* *
21107383 TTACATGCCAAGGTCAAAGCTTCAGCATTAAATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
*** * * *
21107417 TTACACATCAAGGTCAAAACTTTAGCACTATATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
* * * *
21107451 TTACGTGCACTAAAGCCAAAG---CAG-A--AGATA
1 TTACATGC-C-AAGGTCAAAGCTTCAGCACTAGATG
* *
21107481 TTACACGCCAAGGTCAAAGCTTCAGTACTAGATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
* *
21107515 TTACATGCCAAGGTCAAAGCTTCGGCACCAGATG
1 TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
21107549 TTACA
1 TTACA
21107554 CACCAAAGCT
Statistics
Matches: 201, Mismatches: 50, Indels: 36
0.70 0.17 0.13
Matches are distributed among these distances:
27 2 0.01
28 12 0.06
29 2 0.01
30 20 0.10
31 6 0.03
32 4 0.02
33 5 0.02
34 133 0.66
35 2 0.01
36 13 0.06
37 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (34 bp):
TTACATGCCAAGGTCAAAGCTTCAGCACTAGATG
Found at i:21111750 original size:7 final size:7
Alignment explanation
Indices: 21111738--21111791 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
21111728 AATACTTTAA
21111738 ATAAATT
1 ATAAATT
21111745 ATAAATT
1 ATAAATT
21111752 ATAAATT
1 ATAAATT
21111759 ATAAATAT
1 ATAAAT-T
* *
21111767 TTTAA--
1 ATAAATT
21111772 ATAAATT
1 ATAAATT
21111779 ATAAATT
1 ATAAATT
21111786 ATAAAT
1 ATAAAT
21111792 ATTTAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 3 0.08
7 33 0.82
8 4 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATAAATT
Found at i:21111751 original size:34 final size:34
Alignment explanation
Indices: 21111712--21111791 Score: 133
Period size: 34 Copynumber: 2.4 Consensus size: 34
21111702 TATTAATATT
* *
21111712 TAAATTATCAATTATTAATACTTTAAATAAATTA
1 TAAATTATAAATTATAAATACTTTAAATAAATTA
*
21111746 TAAATTATAAATTATAAATATTTTAAATAAATTA
1 TAAATTATAAATTATAAATACTTTAAATAAATTA
21111780 TAAATTATAAAT
1 TAAATTATAAAT
21111792 ATTTAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (34 bp):
TAAATTATAAATTATAAATACTTTAAATAAATTA
Found at i:21111775 original size:27 final size:28
Alignment explanation
Indices: 21111745--21111804 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 28
21111735 TAAATAAATT
*
21111745 ATAAATTATAAATTATAAATATTT-TAA
1 ATAAATTATAAATTATAAATATTTAAAA
21111772 ATAAATTATAAATTATAAATATTTAAAA
1 ATAAATTATAAATTATAAATATTTAAAA
21111800 ATAAA
1 ATAAA
21111805 ATAAAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
ATAAATTATAAATTATAAATATTTAAAA
Found at i:21111781 original size:20 final size:19
Alignment explanation
Indices: 21111706--21111784 Score: 69
Period size: 20 Copynumber: 4.2 Consensus size: 19
21111696 TCAAAATATT
*
21111706 AATATTTAAATTATCAATTATT
1 AATATTTAAA-TA--AATTATA
21111728 AATACTTTAAATAAATTAT-
1 AATA-TTTAAATAAATTATA
21111747 AA-A-TT--ATAAATTATA
1 AATATTTAAATAAATTATA
21111762 AATATTTTAAATAAATTATA
1 AATA-TTTAAATAAATTATA
21111782 AAT
1 AAT
21111785 TATAAATATT
Statistics
Matches: 50, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
14 9 0.18
15 2 0.04
16 3 0.06
18 3 0.06
19 2 0.04
20 19 0.38
22 6 0.12
23 6 0.12
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
AATATTTAAATAAATTATA
Found at i:21111832 original size:25 final size:25
Alignment explanation
Indices: 21111786--21111835 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
21111776 ATTATAAATT
*
21111786 ATAAATATTTAAAAATAAAATAAAA
1 ATAAATAATTAAAAATAAAATAAAA
* * *
21111811 ATAAATAATTATATATATAATAAAA
1 ATAAATAATTAAAAATAAAATAAAA
21111836 TATATTTTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (25 bp):
ATAAATAATTAAAAATAAAATAAAA
Found at i:21127812 original size:15 final size:18
Alignment explanation
Indices: 21127782--21127821 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
21127772 GAATTAAATT
21127782 ATAAAATAATTTTATT-A
1 ATAAAATAATTTTATTAA
21127799 ATAAAA-AA-TTTATTAA
1 ATAAAATAATTTTATTAA
21127815 ATAAAAT
1 ATAAAAT
21127822 TATAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 6 0.29
16 9 0.43
17 6 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAAAATAATTTTATTAA
Found at i:21135141 original size:43 final size:43
Alignment explanation
Indices: 21135094--21135199 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 43
21135084 AGTACCCCAA
*
21135094 ATCAAGGATATCAAGCATTAGGCTTGGAAACGTAACACTACAG
1 ATCAAGGATATCAAGCATTAGGATTGGAAACGTAACACTACAG
* * * ** * *
21135137 ATCAAGGATATCAAGCATAATGATTTGAATTGTATCACTATAG
1 ATCAAGGATATCAAGCATTAGGATTGGAAACGTAACACTACAG
21135180 ATCAAGGATATCAAGCATTA
1 ATCAAGGATATCAAGCATTA
21135200 TACTTGGTAG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (43 bp):
ATCAAGGATATCAAGCATTAGGATTGGAAACGTAACACTACAG
Found at i:21135737 original size:86 final size:86
Alignment explanation
Indices: 21135575--21135760 Score: 198
Period size: 86 Copynumber: 2.2 Consensus size: 86
21135565 CATAGTACCC
* * *
21135575 AAGATCAAGGATATCAAGCATTAGGCTTGGAAGCGTAGCACTATAGATCAAGGATATCAAGAATA
1 AAGATCAAGGATATCAAGCATTAGGCTTGGAAGCATAACACCATAGATCAAGGATATCAAGAATA
* *
21135640 CTGATTTGAATTGTATG-ACGA
66 CTGATTGGAATTATA-GCACGA
* * * * * * *
21135661 TAGATCAAGGATATCAAGCATTATGCTTGGTAGCATAACACCCTATATCAAGGATAT-AATCTAT
1 AAGATCAAGGATATCAAGCATTAGGCTTGGAAGCATAACACCATAGATCAAGGATATCAA--GAA
* *
21135725 TA-TGCTTGGAATTATAGCACTA
64 TACTGATTGGAATTATAGCACGA
21135747 AAGATCAAGGATAT
1 AAGATCAAGGATAT
21135761 TTAGTGGATA
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
85 3 0.04
86 76 0.93
87 3 0.04
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (86 bp):
AAGATCAAGGATATCAAGCATTAGGCTTGGAAGCATAACACCATAGATCAAGGATATCAAGAATA
CTGATTGGAATTATAGCACGA
Found at i:21136611 original size:43 final size:43
Alignment explanation
Indices: 21136564--21136676 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
21136554 GTAGTACCCC
* * * *
21136564 AGATCAAAGATATCAAGCATTAAGCTTAGAAGTGTAGCACTAT
1 AGATCAAGGATATCAAGCATTATGCTTAGAACTGTAGCACGAT
* * * *
21136607 AGATCAAGGATATCAAG-AATACTGATTTGAACTGTATCACGAT
1 AGATCAAGGATATCAAGCATTA-TGCTTAGAACTGTAGCACGAT
21136650 AGATCAAGGATATCAAGCATTATGCTT
1 AGATCAAGGATATCAAGCATTATGCTT
21136677 GGTACCATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 3 0.05
43 52 0.90
44 3 0.05
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (43 bp):
AGATCAAGGATATCAAGCATTATGCTTAGAACTGTAGCACGAT
Found at i:21137111 original size:43 final size:43
Alignment explanation
Indices: 21137059--21137166 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
21137049 GTAATACCTC
*
21137059 AGATAAAGGATATCAAGCATTAGGCTTGGAAGCT-TAGCACTG-T
1 AGATAAAGGATATCAAGCATTAGGATTGGAA-CTGTAGCAC-GAT
* * * * *
21137102 AGATCAAGGATATCAAGAATAAGGATTTGAACTGTATCACGAT
1 AGATAAAGGATATCAAGCATTAGGATTGGAACTGTAGCACGAT
*
21137145 AGATTAAGGATATCAAGCATTA
1 AGATAAAGGATATCAAGCATTA
21137167 CATTTGGTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 3 0.06
43 51 0.94
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (43 bp):
AGATAAAGGATATCAAGCATTAGGATTGGAACTGTAGCACGAT
Found at i:21137494 original size:43 final size:43
Alignment explanation
Indices: 21137400--21137500 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
21137390 AGATATTATG
** *
21137400 ACAAATCAATGATATCAAGCATTATAATTGGAATTGTAGCACC
1 ACAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACA
* * * * **
21137443 TCAGATCAAAGATATCAAGTATTATGCTTGGAAACGTAGCACA
1 ACAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACA
21137486 ACAAATCAATGATAT
1 ACAAATCAATGATAT
21137501 AATTAAGCAG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.27
Consensus pattern (43 bp):
ACAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACA
Found at i:21137574 original size:43 final size:43
Alignment explanation
Indices: 21137512--21137612 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
21137502 ATTAAGCAGT
** * * *
21137512 ATCAAGGATATCATCTATTATGCTTGGAATCGTAGTACCT-CAG
1 ATCAAGGATATCAAGTATTAGGCTTGGAAGCGTAGCA-CTACAG
* *
21137555 ATCAAGGATATCAAGTATTAGGCTTGGAAGCTTAGCACTATAG
1 ATCAAGGATATCAAGTATTAGGCTTGGAAGCGTAGCACTACAG
21137598 ATCAAGGATATCAAG
1 ATCAAGGATATCAAG
21137613 AATAATGATT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.04
43 48 0.96
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (43 bp):
ATCAAGGATATCAAGTATTAGGCTTGGAAGCGTAGCACTACAG
Found at i:21137688 original size:494 final size:495
Alignment explanation
Indices: 21134865--21138773 Score: 5282
Period size: 494 Copynumber: 7.9 Consensus size: 495
21134855 CATAAAAGAT
* ** *
21134865 GCATTTTGCTTGGAATCATAGCATTACAAATCAAGGATTATTAATTAAGTAGTGGATATCAAGTA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGG---A-TAATTAAGCAGTGGATATCAAGTA
* * ** * *
21134930 GATATCATGACATATCAAGGATATCAAGTATTATAATTGGAACTGTATAACCTTAGATCAAGGAT
62 GATATCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGAT
* * * * * ** *
21134995 ATCAAGCATTATGCTTGGAAACATAGCACTATAAATAAATAATATAATTAAGCAGTATCAAGGAT
127 ATCAAGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGAT
* * ** * *
21135060 ATTATCTATTATGCGTGGAACTATAGTACCCCAAATCAAGGATATCAAGCATTAGGCTTGGAAAC
192 ATCATCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGC
* * * * * *
21135125 GTAACACTACAGATCAAGGATATCAAGCATAATGATTTGAATTGTATCACTATAGATCAAGGATA
257 TTAGCACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATA
* * * * * * *
21135190 TCAAGCATTATACTTGGTAGCATAACACCTTATGTCAAGGATATTATCTACTATGCTTGGAATTG
322 TCAAGCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTG
* * **
21135255 TAGCACTACAAATCAAGGATATTTAGTAGATATC-A-T-GCCAT--TG-C--A--AA-GATATCA
387 TAGCACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCA
* * *
21135309 TTTATTATGCTTGGTACCAGAGGA-CCTCAGATCTAAGATATTAG
452 TTTATTATGCTTGGTACCATAGGACCCT-AGATCAAAGATATTGG
* *
21135353 GCATTATGCTTGGAATCATAGCACTACAAATCAAGGATAATTAA-CTAGTGGATATCAAGCAGAT
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGC-AGTGGATATCAAGTAGAT
** * * *
21135417 ATCACAACAAATCAAGGATATCAAGTATTATAATTGGAACTGTAGCACTTCAGAT-GAAGCATAT
65 ATCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAG-ATAT
** * * * * *
21135481 CAAACATCATGCTTGGAAACGTAACACTACAAATCAAAGATATAATTAAGTAGTATTAAGGATAT
129 CAAGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATAT
* * * *
21135546 CATCTATTATGTTTGGAACCATAGTACCCAAGATCAAGGATATCAAGCATTAGGCTTGGAAGCGT
194 CATCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTT
* * *
21135611 AGCACTATAGATCAAGGATATCAAGAATACTGATTTGAATTGTATGACGATAGATCAAGGATATC
259 AGCACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATC
* * * *
21135676 AAGCATTATGCTTGGTAGCATAACACCCTATATCAAGGATATAATCTATTATGCTTGGAATTATA
324 AAGCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTA
*
21135741 GCACTAAAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATT
389 GCACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATT
** **
21135806 TATCGTGCTTCATACCATAGGA-CCTCAGATCAAAGATATTGG
454 TATTATGCTTGGTACCATAGGACCCT-AGATCAAAGATATTGG
* * *
21135848 GCATTATGCTTGGAATCATAACGTTACAAATCAAGGATAATTAAACAGTGGATATCAAGTAGATA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
** * * *
21135913 TCATGGTAGATCAAGGATATCAAACATTATAATTGGAATTGTAGCACCTCAGATCAAAGATATCA
66 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
*
21135978 AGTATTATGCTTGGAAACCTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
131 AGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
*
21136043 TCTATTAT-CTTGGAACCGTAGTACCCC-GATCAAAGATATCAAGCATTAGGCTTGGAAGCTTAG
196 TCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTTAG
* * *
21136106 CACTATAGATCAAGGATATCAAGAATAATGATTTGAAATGTATCACGAGAGATCAAGGATATCAT
261 CACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATCAA
* * * *
21136171 GCATTATGCTTGGTACCATAACACCTTATATTAAGGATATCATTTATTATGTTTGGAATTGTAAC
326 GCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAGC
** * *
21136236 ACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAACAAAGATATCATCTA
391 ACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATTTA
* * * * * *
21136301 CTT-TGCTTGGTCCCACAAGACCTTAGATCCAGGATATTGG
456 -TTATGCTTGGTACCATAGGACCCTAGATCAAAGATATTGG
* * * *
21136341 ACATTATGCTTGGAATCATAGCACTACAAATTAAGGATAATTAAGCAGTAGATATCAAGTAGATA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
* * * * * ** * *
21136406 TCATGACAAATCAAGAATATCACGTACTATAATTGGAACTATAGCAGTTCAGATGAATGATATCA
66 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
** * * * * * * * *
21136471 AACATCATGCTTGGAAATGTAACACTAGAAATCAAAGATATAATTAAGTAGTATTAAGAATATCA
131 AGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
* * * * *
21136536 TCCATTATACTTGGAACCGTAGTACCCCAGATCAAAGATATCAAGCATTAAGCTTAGAAG-TGTA
196 TCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCT-TA
*
21136600 GCACTATAGATCAAGGATATCAAGAATACTGATTTGAACTGTATCACGATAGATCAAGGATATCA
260 GCACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATCA
*
21136665 AGCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATCTATTATGCTTGGAATTGTAG
325 AGCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAG
* ** * *
21136730 CATTACAGATCATTGATATTTAGTGGATATCAAGTAGATATCAAGACATAGTAAGGATATCA-TC
390 CACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATTT
** * *
21136794 ATTATGCTTGACACCATAGGATCTTAGATCAAAGATATTGG
455 ATTATGCTTGGTACCATAGGACCCTAGATCAAAGATATTGG
* *
21136835 GCATTATGCTTGGAATCATAACGCTACAAATCAAGGATAATTAAGCAGTAGATATCAAGTAGATA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
21136900 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
66 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
* * * * * * *
21136965 AGTATTATGCTTAGAAAACATAGCATAACTAATCAAGGATATAATTAAGCAGTATTAAGAATATC
131 AGTATTATGCTT-GGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATC
* * * *
21137030 ATCTATTATGCTTGGAATCGTAATACCTCAGATAAAGGATATCAAGCATTAGGCTTGGAAGCTTA
195 ATCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTTA
* * *
21137095 GCACTGTAGATCAAGGATATCAAGAATAAGGATTTGAACTGTATCACGATAGATTAAGGATATCA
260 GCACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATCA
*** *
21137160 AGCATTACATTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATACTTGGAATTGTAG
325 AGCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAG
* * *
21137225 CACTAGATATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATACCATTT
390 CACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATTT
* * * *
21137290 ATCATACTTGGTACCATAAGACCCTAGATCAAAGATATTGA
455 ATTATGCTTGGTACCATAGGACCCTAGATCAAAGATATTGG
** * * * *
21137331 AAATTATGCTTGGAATCATAGTGCTACAAATCAAAGATAATTAACCAGTGCATATCAAG-AGATA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
* * *
21137395 TTATGACAAATCAATGATATCAAGCATTATAATTGGAATTGTAGCACCTCAGATCAAAGATATCA
66 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
* *
21137460 AGTATTATGCTTGGAAACGTAGCACAACAAATCAATGATATAATTAAGCAGTATCAAGGATATCA
131 AGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
* * *
21137525 TCTATTATGCTTGGAATCGTAGTACCTCAGATCAAGGATATCAAGTATTAGGCTTGGAAGCTTAG
196 TCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTTAG
* *
21137590 CACTATAGATCAAGGATATCAAGAATAATGATTTGAACTATATCATGATAGATCAAGGATATCAA
261 CACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATCAA
*
21137655 GCTTTATGCTTGGTACCA-AGACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAG
326 GCATTATGCTTGGTACCATA-ACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAG
* * * * *
21137719 CATTACAGATCAAGAATTTTTAGTGGATATCAAGTAAATATCATGACATAGTAAGGATATCATCT
390 CACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATTT
* *
21137784 ATTATACTTGGTACCATAGGACCCCAGATCAAAGATATTGG
455 ATTATGCTTGGTACCATAGGACCCTAGATCAAAGATATTGG
* * *
21137825 GAATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGTAGTGGATATCAA-AAGATA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
* * * * * *
21137889 TCACGACAAATCAATGATATCAAGCATTGTAATTGGAACCGTAGCACCTCAAATCAATGATATCA
66 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
*
21137954 AGTATTATGCTTGGAAACGTAGCACAATAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
131 AGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
* * * *
21138019 TCTATTATGCTTGGAATCGTAGTACCCCAAATCAAGGATATCAAGTACTAGGCTTGGAAGCTTAG
196 TCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTTAG
* *
21138084 CACTATAGATCAAGGATATCAAGAATAATGATTTGAACTATATCATGATAGATCAAGGATATCAA
261 CACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATCAA
*
21138149 GCTTTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAGC
326 GCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAGC
* * * * * *
21138214 ATTCCAAATCAAGAATATTTAGTGGATATCAAGTAAATATCATGACATAGTAAGGATATCATCTA
391 ACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATTTA
* *
21138279 TTATACTTGGTACCATAGGACACC-AGATCAAAGATAATGG
456 TTATGCTTGGTACCATAGGAC-CCTAGATCAAAGATATTGG
* *
21138319 GAATTATGCTTGGAATCATAGCGCTACAAATTAAGGATAATTAAGCAGTGGATATCAAG-AGATA
1 GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
* ** *
21138383 TCATGACAAATCAATGATATCAAGCATTGGAATTGGAA-TCGTAGCACCTCAAATCAAAGATATC
66 TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACT-GTAGCACCTCAGATCAAAGATATC
* *
21138447 AAGTATTATGTTTGGAAACGTAGCACAATAAATCAAGGATATAATTAAGTAGTATCAAGGATATC
130 AAGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATC
* * * *
21138512 ATCTATTTTGCTTGGAACCATAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGAAAGCGTA
195 ATCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTTA
* * ** ** *
21138577 GCACTACAGAGT-AAGGATATCAAGCATAATGATTTGAACCATATCATTATAAATCAAGGATATC
260 GCACTATAGA-TCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATC
* * * * *
21138641 AAGTATTATGCTTGGTACTATAACATCCTCTATCAAGGATATCATTTATTATGCTTGGAATTATA
324 AAGCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTA
* * * *
21138706 GCACTACAGATTAAGGA-ATTTAGTGGATATGAAGTAGATATCATGACACAGTGAGGATATCATC
389 GCACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCAT-
21138770 TTAT
453 TTAT
21138774 AAAACAATAT
Statistics
Matches: 3058, Mismatches: 331, Indels: 58
0.89 0.10 0.02
Matches are distributed among these distances:
483 2 0.00
484 336 0.11
485 2 0.00
486 1 0.00
487 3 0.00
488 34 0.01
489 2 0.00
490 1 0.00
492 1 0.00
493 452 0.15
494 1353 0.44
495 781 0.26
496 90 0.03
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (495 bp):
GCATTATGCTTGGAATCATAGCGCTACAAATCAAGGATAATTAAGCAGTGGATATCAAGTAGATA
TCATGACAAATCAAGGATATCAAGCATTATAATTGGAACTGTAGCACCTCAGATCAAAGATATCA
AGTATTATGCTTGGAAACGTAGCACAACAAATCAAGGATATAATTAAGTAGTATCAAGGATATCA
TCTATTATGCTTGGAACCGTAGTACCCCAGATCAAGGATATCAAGCATTAGGCTTGGAAGCTTAG
CACTATAGATCAAGGATATCAAGAATAATGATTTGAACTGTATCACGATAGATCAAGGATATCAA
GCATTATGCTTGGTACCATAACACCCTATATCAAGGATATCATTTATTATGCTTGGAATTGTAGC
ACTACAGATCAAGGATATTTAGTGGATATCAAGTAGATATCATGACATAGTAAGGATATCATTTA
TTATGCTTGGTACCATAGGACCCTAGATCAAAGATATTGG
Found at i:21137729 original size:86 final size:86
Alignment explanation
Indices: 21137511--21137732 Score: 198
Period size: 86 Copynumber: 2.6 Consensus size: 86
21137501 AATTAAGCAG
* * *
21137511 TATCAAGGATATCATCTATTATGCTTGGAATCGTAGTACCT-CAGATCAAGGATATCAAGTATTA
1 TATCAAGGATATCATCTATTATGCTTGGAATTGTAGCA-TTACAGATCAAGGATATCAAGTATTA
** *
21137575 GGCTTGGAAGCTTAGCACTATA
65 GGCTTGGAAGCCAAGCACCATA
* *** * * * * * * * *
21137597 GATCAAGGATATCAAGAATAATGATTTGAACTATATCATGATAGATCAAGGATATCAAGCT-TTA
1 TATCAAGGATATCATCTATTATGCTTGGAATTGTAGCATTACAGATCAAGGATATCAAG-TATTA
* * *
21137661 TGCTTGGTA-CCAAGACACCCTA
65 GGCTTGGAAGCCAAG-CACCATA
*
21137683 TATCAAGGATATCATTTATTATGCTTGGAATTGTAGCATTACAGATCAAG
1 TATCAAGGATATCATCTATTATGCTTGGAATTGTAGCATTACAGATCAAG
21137733 AATTTTTAGT
Statistics
Matches: 100, Mismatches: 33, Indels: 6
0.72 0.24 0.04
Matches are distributed among these distances:
85 3 0.03
86 96 0.96
87 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (86 bp):
TATCAAGGATATCATCTATTATGCTTGGAATTGTAGCATTACAGATCAAGGATATCAAGTATTAG
GCTTGGAAGCCAAGCACCATA
Found at i:21137968 original size:43 final size:43
Alignment explanation
Indices: 21137895--21137978 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
21137885 GATATCACGA
* *
21137895 CAAATCAATGATATCAAGCATTGTAATTGGAACCGTAGCACCT
1 CAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACCT
* **
21137938 CAAATCAATGATATCAAGTATTATGCTTGGAAACGTAGCAC
1 CAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCAC
21137979 AATAAATCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (43 bp):
CAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACCT
Found at i:21137986 original size:43 final size:43
Alignment explanation
Indices: 21137895--21137994 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
21137885 GATATCACGA
* * *
21137895 CAAATCAATGATATCAAGCATTGTAATTGGAACCGTAGCACCT
1 CAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACAT
* **
21137938 CAAATCAATGATATCAAGTATTATGCTTGGAAACGTAGCACAAT
1 CAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCAC-AT
*
21137982 -AAATCAAGGATAT
1 CAAATCAATGATAT
21137995 AATTAAGTAG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
43 48 0.98
44 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (43 bp):
CAAATCAATGATATCAAGCATTATAATTGGAAACGTAGCACAT
Done.