Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 12 of 30
Found at i:4249660 original size:328 final size:336
Alignment explanation
Indices: 4249048--4249867 Score: 972
Period size: 328 Copynumber: 2.4 Consensus size: 336
4249038 GTCGTGACAC
* ** * * * *
4249048 AAAAGCCATCCATTGACAAGAAAAGTTTATTTAAAGTCACTTATGCGTTTGAAAGCCTTATTACT
1 AAAA-CCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* * * *
4249113 CA-TTATAAATGGTTTTAGAACCTCATAATTGATTTTTAGTTGATTTTTTTTACTTTTTTGGTTA
65 CACTT-TAAATGGTTTTATAACCTCATAATTGATTTTAAGTTGA-ATTTTTTACATTTTTGGTTA
* * *
4249177 AAA-A-ATTATAATTGAATGTTTACCTCAGGAAATGTAAAGCGAAAGTCATCCATTGACAAGAAA
128 AAACATATTATAATTGAATGTTTACCTCAGGAAACGTAAAGCGAAAGCCATCCATTAACAAGAAA
* * *
4249240 AGTTCATTTATAGTGACTCATGCCTTCAAAAGACTTATTACTCACTTTAAATAGTTTTATAAACT
193 AATTCATTTATAGTCACTCATCCCTTCAAAAGACTTATTACTCACTTTAAATAGTTTTATAAACT
* * *
4249305 TATAATTGATTTTAAGTTGAATTTTTTT-TATATTTTTGGTTAAAACAGATTATAATT-AATGTT
258 TATAATTGATTTTAAGTTCAATTTTTTTACAT-TTTTTGGTTAAAACAAATTATAATTAAATGTT
4249368 T-AC-C-T-C-G-AG
322 TGACTCATACGGAAG
** * *
4249377 -AAA-CATCTGTTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCGTATAACTC
1 AAAACCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
*
4249440 ACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAA
66 ACTTTAAATGGTTTTATAACCTCATAATTGATTTTAAGTTGAATT-TTTTACATTTTTGGTTAAA
** * ** *
4249505 ACATATTATAATTGAATGTTTACCTTGGGAAACGTGAATTGAAAGCCATCCATTAAGAAGAAAAA
130 ACATATTATAATTGAATGTTTACCTCAGGAAACGTAAAGCGAAAGCCATCCATTAACAAGAAAAA
* * * * *
4249570 TTCATTTATAGTCACTCATCCCTTCGAAAGGCTTATTACTCTCTTTAAATGGTTTTATAATCTTA
195 TTCATTTATAGTCACTCATCCCTTCAAAAGACTTATTACTCACTTTAAATAGTTTTATAAACTTA
*
4249635 TAATTGATTTTAAGTTCAATTTTTTTACATTTTTTGGTTAAAACAAATTATAATTAAATGTTTGT
260 TAATTGATTTTAAGTTCAATTTTTTTACATTTTTTGGTTAAAACAAATTATAATTAAATGTTTGA
4249700 CTCATGAAACGTGAAG
325 CTCAT---ACG-GAAG
* * * *
4249716 TAAAAGCCATCCATTGACT-TGAAAAATCCATTTGTAGTCACTCAT-CCTTCAAAAGCCTTATTA
1 -AAAA-CCATCCATTGA-TAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* * * *
4249779 CTCGCTTTAAATTGTTTTATAACCCCATAATTGATTTTAAGTTCAATTTTCTTACATTTTT--TA
63 CTCACTTTAAATGGTTTTATAACCTCATAATTGATTTTAAGTTGAATTTT-TTACATTTTTGGT-
*
4249842 TAAAACCTGATTATAATTGAATGTTT
126 TAAAACAT-ATTATAATTGAATGTTT
4249868 TTCTCAGGCA
Statistics
Matches: 416, Mismatches: 51, Indels: 35
0.83 0.10 0.07
Matches are distributed among these distances:
325 2 0.00
326 104 0.25
327 3 0.01
328 161 0.39
329 9 0.02
330 1 0.00
331 1 0.00
332 1 0.00
336 1 0.00
338 1 0.00
339 2 0.00
340 1 0.00
341 12 0.03
342 85 0.20
343 31 0.07
344 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (336 bp):
AAAACCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
ACTTTAAATGGTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTACATTTTTGGTTAAAA
CATATTATAATTGAATGTTTACCTCAGGAAACGTAAAGCGAAAGCCATCCATTAACAAGAAAAAT
TCATTTATAGTCACTCATCCCTTCAAAAGACTTATTACTCACTTTAAATAGTTTTATAAACTTAT
AATTGATTTTAAGTTCAATTTTTTTACATTTTTTGGTTAAAACAAATTATAATTAAATGTTTGAC
TCATACGGAAG
Found at i:4250190 original size:170 final size:170
Alignment explanation
Indices: 4249878--4250324 Score: 533
Period size: 170 Copynumber: 2.6 Consensus size: 170
4249868 TTCTCAGGCA
* * *
4249878 TCGAAACCCTTATTACTCGTTATAA-ATGATTTTACAATCTCATAATTGATTTTAAGTTGTATGT
1 TCGAAAGCCTTATTACTCGTTATAATA-G-TTTTATAATCTCATAATTGATTTTAAGTTGAAT-T
* ** *
4249942 TTTTAT-ATTTTTTGGTTAAAATAGATTATAATTGAATG-TTTACCTCGAAAAATGTGAGGCAAA
63 TTTT-TCATTTTTT-GTTAAAACAGATTATAATTGAATGTTTTACCTCGAAAAACATGAAGCAAA
* ** *
4250005 AGCCATCTATTGACAAGAAAAGTTTATGTAAAGTCATTCATGCCT
126 AGCCATCCATTGACAAGAAAAGTCCATGTAAAGTCACTCATGCCT
* * *
4250050 TTGAAAGCCTTATTACTCGCTATAATAGTTTTATAATCTCATAATTGCTTTTAAGTTGAATTTTT
1 TCGAAAGCCTTATTACTCGTTATAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * * * * *
4250115 TTCATTTTTTGTTAAAACATATTATAATCGAATGTTTTACCTTGAGAAACATGAAGCGAAAGTCA
66 TTCATTTTTTGTTAAAACAGATTATAATTGAATGTTTTACCTCGAAAAACATGAAGCAAAAGCCA
* ** *
4250180 TCCATTGACAAGAAAAGTCCATTTCTAGTCGCTCATGCCT
131 TCCATTGACAAGAAAAGTCCATGTAAAGTCACTCATGCCT
* * *
4250220 TCGAAAGCCTTATTACTCATGTTA-AATGGTTTTATAACCTCATAATTGATTTTAAGTTCAATTT
1 TCGAAAGCCTTATTACTC--GTTATAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TT
*
4250284 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
63 TTTTT-CATTTTTTGTTAAAACAGATTATAATTGAATGTTT
4250325 CCTTGGGAAA
Statistics
Matches: 235, Mismatches: 33, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
169 22 0.09
170 84 0.36
171 63 0.27
172 33 0.14
173 33 0.14
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (170 bp):
TCGAAAGCCTTATTACTCGTTATAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
TTCATTTTTTGTTAAAACAGATTATAATTGAATGTTTTACCTCGAAAAACATGAAGCAAAAGCCA
TCCATTGACAAGAAAAGTCCATGTAAAGTCACTCATGCCT
Found at i:4252403 original size:172 final size:172
Alignment explanation
Indices: 4251518--4254393 Score: 1997
Period size: 172 Copynumber: 16.6 Consensus size: 172
4251508 NNNNNNNNNN
*
4251518 GCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * * *
4251583 TTTTTTGGTTAAAACAGATTATAATTGAATG-TTGCCTCAGGAAACGTGAAGCGAAAGCCATCAA
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * *
4251647 TTGACATA-AAAAGTCCATTTGTAGTCATTCATGCCTTCGAAA
131 TTGACA-AGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* *
4251689 -CCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGATGAATTTTTTTATA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * * *
4251753 TTTTTA-GTTAAAACAGATTATAATTGAATGTTCACCTTAGTAAACATGAAGCGAAAGTCATCCA
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * ** *
4251817 TTCACAAAAAAAAGTCCA-TTATAGGCACTCAT-GGTGTCGAAA
131 TTGAC-AAGAAAAGTCCATTTATAGTCACTCATACCT-TCAAAA
* * * * * * * * *
4251859 CCCTTATTACTAGCTATAAATAGTTTTATAATCTCATAATTGAGTTCAAGCTAAATTTTTTTTGC
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTAC
* * * * * * *
4251924 ATTTTTTGGTCAAAACAGATTATGATTGAATGTTTGCCTCAGGAAATGTGAAGCAAAAGCCATCC
65 ATTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* *
4251989 ATTGACACGAAAAGTCCATTTGTAGTCACTCATACCTTCAAAA
130 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * * ** *
4252032 GCCTTATTAATTGCTTTAAATGGTTTTATAATCTCATAATTAATTCCAAATTGAATTTTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
** * ** *
4252097 -TTTTACATTAAAACAGATTGTAATTGAATGTTTGGCTTAGGAAACGTGAAGCGAAAGCCATCAA
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * **
4252161 TTGACAAGAAAAGTCTATTTGTAGTCACCCATACCTTTGAAA
131 TTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * * *
4252203 GCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGAGTTTACGCTGAATTTTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * * * *
4252268 TTTTTAGGTTAAAATAGATTATAATTGAATGTTTGCCTTGGGAAACATGAAGCAAAAGCCATCCA
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * *
4252333 TTGACATGAAAAGTCCATTTGTAGTCACTCATCCCTTCAAAA
131 TTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* *
4252375 GCCTTATTACTCGCTATAAATGGTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * ** *
4252440 TTTTTTA-GTTAAAATAGATTATAATTCAATGTTTACCTT-GAGAAATATGAAGCAAAAGCCATC
66 -TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * *
4252503 CATTAAGAAGAAAAGTTCATATATAGTCACTCATACCTTCAAAA
129 CATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* ** ** * *
4252547 GCCTTATTAGTCATTTTAAATGGTTTTATAGCCTCA-AATTGATTTTAAGTTCAAGTTTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * * *
4252611 TTTTT-GGTT-AAACAGATTATAA-TAAATATTTACCTATA-GAAACGTGAGGTGAAAGCCATCC
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCT-TAGGAAACGTGAAGCGAAAGCCATCC
** * ** * * * *
4252672 ATTGGTAGGAAAAGTTTATTTAAAGTCACTCTTGCCTTTAAAA
130 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * * * *
4252715 GCCTTATTAGTTGCTTTAAATGGTTTTATAATCTCATAATTGCTTTTAAGTTGGATTTATGTT-C
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT-TTTTAC
* * * *
4252779 A-TTTT-GGTTGAAACAGATTATAATTGAATGCTTACCTCT-GGAAACGTGAAGTGAAAGGCATC
65 ATTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCT-TAGGAAACGTGAAGCGAAAGCCATC
* *
4252841 CATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCTAAA
129 CATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* *
4252885 GCCTTATTACTCGCTTTAAATGGTTTTATAACCTCATAATTGATTTTAAGTTCAA-TTTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * * * *
4252949 TTTTT-GGTTAAACCAGATTATAATTGAATGTTTACCTCAGGAAACGTGAGGCAAAAGCAATCCA
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
** ** * ***
4253013 TTGATGAGAAAAGTTTATTTAAAGTCACTCATGTGTTCAAAA
131 TTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* ** *** * * * * * **
4253055 GCCATCCATTGA-T-GC-GAAAAGTCCATTTGTAGTCAC-TCA-TGCCTTCAAAGGCCTT--ATT
1 GCC-T-TATT-ACTCGCTTTAAA-TGGTTTTATAATCTCATAATTG-ATTTTAA-G--TTGAATT
* ** * ** * ** * **
4253113 ATTGGTTATAAATAGTTTTATAATCTCATAATTGATTTTAGGCTGATATTTTTTATATTTTTTAG
58 -TT--TT-TACAT--TTTTA-GGT-T-AAAACAGATTATA-ATTGA-A--TGTT-TA--CCTTAG
* * ** *** * * * ** *** * *
4253178 TTAAA-AT--AGATTATAATTGA-CTATTTGCCTCAAGAAACGTGAAGCAAAAG-CGA-TCCATT
107 -GAAACGTGAAG-CGA-AAGCCATCCA-TTG--ACAAGAAAAGTCCATTTATAGTC-ACT-CATA
** *
4253237 GATACGAAAA
164 CCTTC-AAAA
*** ** * * *
4253247 GTCCATTTGTAGTTACTCATGCCTTCTAAAACCTTATTACTCGCTTTAAATGATTGTATAATCTC
1 G-CC---T-TA-TTACTC--G-CTT-TAAATGGTT-TTA-T-AATCT-CATAATTG-AT--T-T-
**
4253312 ATAATTGATTTTAAGATGAATTTTTTTATGTTTTT-GGTTAAAACAGATTATAATTGAATGTTTA
47 -TAA--G----T----TGAATTTTTTTACATTTTTAGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * ** **
4253376 CCTCAGGAAACATGAAGCGAAAGTCATCCACTGACAAAAAAAGTTCATTTATAGGCTTTCATGGC
101 CCTTAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACC
* *
4253441 ATCGAAA
166 TTCAAAA
* * * * *
4253448 CCCTTACTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTTAA---TTTT---
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * * *
4253507 TTTTT-GGATAAAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGC-ACAAGCCATTC
66 TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGA-AAGCCA-TC
** * *
4253570 C-TTGATGAGAAAAGTCCATTTATAG----GC--A--TTC--AT
129 CATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * * * * *
4253603 GCCTTAGTACTCGCTATGAATGGTTTTATAAACTCATAATTGATTTTAAGTTGGATTTGTTT-CA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC-
* * * * * * * *
4253667 ATTCTTTTGGTTAAAATAGATAATAATTGAACGTTTTCC-TCGAGAAACGTGAAACGAAAGTCAT
65 ATT-TTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCAT
** * * ** **
4253731 CCATTGACAAGAAAAGTTTATTTGTAGTCACCCATGTCTTTGAAA
128 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * * * *
4253776 GCCTTAGTACTCG-TTATGAATGGTTTTATGATCTCATAATTGATTTTAAATTGATTTTTTTTTT
1 GCCTTATTACTCGCTT-TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA--ATTTTTTT
* * *
4253840 ACATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAAGAAACGTGAAGCGAAAGCCAT
63 ACATTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCAT
* * * * *
4253905 CCATTTACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAA
128 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * ** * * *
4253950 CCCTTACTACTTACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTTCATA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
* * ** * * *
4254015 TTTTGT-GGTTAAAACAGATTGTAATTGAATGTTTGCCTGGGGAAACATGAGGCGAAAGCAATCC
66 TTTT-TAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * *
4254079 ATTGATAAGAAAAGGT-TATTTAAAGTCGCTCATGCCTTCAAAA
130 ATTGACAAGAAAA-GTCCATTTATAGTCACTCATACCTTCAAAA
* * * *
4254122 GCCTTATTAGTCGATTTAAATGGTTTTATAATCTCATAATTGCTTTTAA-TTGGAATTTTTTTTT
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT-GAA-TTTTTTTA
* * ** * * *
4254186 CGTTTTT-GGTTAAAACA-ATTTATAATTGAATGTTTAGCTCCGGAAACATAAAGTGAAAGCCAT
64 CATTTTTAGGTTAAAACAGA-TTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCAT
* * * * * *
4254249 CGATTAAGAAGAAAAGTCCATTTATAGTCCCTCATGCCTTCGAAA
128 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
* * * * *
4254294 GCCTTTTTACTCGCTTTAAATGGTTTTATAACCTCATAATTGATATTAAGTTTAATTCTTTTACA
1 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
*
4254359 TTTTTTA-GTTAAAACAGATTATAATTAAATGTTTA
66 -TTTTTAGGTTAAAACAGATTATAATTGAATGTTTA
4254394 TGTAATGACC
Statistics
Matches: 2135, Mismatches: 436, Indels: 267
0.75 0.15 0.09
Matches are distributed among these distances:
155 49 0.02
157 2 0.00
158 3 0.00
161 3 0.00
162 8 0.00
163 61 0.03
164 2 0.00
165 72 0.03
166 3 0.00
167 1 0.00
168 108 0.05
169 76 0.04
170 339 0.16
171 259 0.12
172 601 0.28
173 187 0.09
174 133 0.06
175 14 0.01
176 5 0.00
178 4 0.00
179 1 0.00
180 1 0.00
181 4 0.00
182 8 0.00
183 4 0.00
184 2 0.00
186 5 0.00
187 9 0.00
188 5 0.00
189 11 0.01
190 8 0.00
191 24 0.01
192 7 0.00
193 2 0.00
195 8 0.00
196 5 0.00
197 1 0.00
199 1 0.00
200 3 0.00
201 6 0.00
202 22 0.01
203 6 0.00
204 12 0.01
205 3 0.00
206 6 0.00
207 6 0.00
209 2 0.00
210 3 0.00
211 9 0.00
212 3 0.00
213 2 0.00
215 5 0.00
217 3 0.00
218 2 0.00
219 1 0.00
220 2 0.00
221 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (172 bp):
GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
TTTTTAGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
TTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAA
Found at i:4253062 original size:50 final size:50
Alignment explanation
Indices: 4253000--4253095 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
4252990 AAACGTGAGG
**
4253000 CAAAAGCAATCCATTGATGAGAAAAGTTTATTTAAAGTCACTCATGTGTT
1 CAAAAGCAATCCATTGATGAGAAAAGTCCATTTAAAGTCACTCATGTGTT
* * **
4253050 CAAAAGCCATCCATTGATGCGAAAAGTCCATTTGTAGTCACTCATG
1 CAAAAGCAATCCATTGATGAGAAAAGTCCATTTAAAGTCACTCATG
4253096 CCTTCAAAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (50 bp):
CAAAAGCAATCCATTGATGAGAAAAGTCCATTTAAAGTCACTCATGTGTT
Found at i:4262895 original size:34 final size:34
Alignment explanation
Indices: 4262857--4262985 Score: 156
Period size: 33 Copynumber: 3.8 Consensus size: 34
4262847 TTTGAAATAT
* * *
4262857 AGAAAAATTAGAGTTGTTTGCTACCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
* *
4262891 AGAAAAATTGGAGCTATTT-TTGCCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
*
4262924 AAAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
4262958 A-AAAAATTGGACAGCT-TTGTGCTGCCAA
1 AGAAAAATTGG--AGCTGTT-TGCTGCCAA
4262986 AATTGAGGAG
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
33 38 0.46
34 32 0.39
35 13 0.16
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (34 bp):
AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
Found at i:4263132 original size:22 final size:22
Alignment explanation
Indices: 4263101--4263148 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
4263091 GAGAGGAAAG
* * *
4263101 GAAGAGAGGAAGCCATGGTGGT
1 GAAGAAAGGAAACCACGGTGGT
4263123 GAAGAAAGGAAACCACGGTGGT
1 GAAGAAAGGAAACCACGGTGGT
4263145 GAAG
1 GAAG
4263149 GGAAGCCACG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.42, T:0.10
Consensus pattern (22 bp):
GAAGAAAGGAAACCACGGTGGT
Found at i:4263190 original size:25 final size:23
Alignment explanation
Indices: 4263162--4263230 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
4263152 AGCCACGGGC
4263162 TGGAAAGAAAAAAGAAGAAGAAACA
1 TGGAAAGAAAAAAGAA-AAGAAA-A
4263187 TGGAAGAGAGAAAAAG-AAAGAAAA
1 TGGAA-AGA-AAAAAGAAAAGAAAA
*
4263211 -AGAAA-AAAAAAGAAAAGAAA
1 TGGAAAGAAAAAAGAAAAGAAA
4263231 TAGAAAATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
20 6 0.15
21 8 0.20
22 1 0.03
23 3 0.08
24 1 0.03
25 11 0.28
26 4 0.10
27 6 0.15
ACGTcount: A:0.72, C:0.01, G:0.23, T:0.03
Consensus pattern (23 bp):
TGGAAAGAAAAAAGAAAAGAAAA
Found at i:4263208 original size:10 final size:10
Alignment explanation
Indices: 4263190--4263236 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
4263180 AGAAACATGG
*
4263190 AAGAGAGAAA
1 AAGAAAGAAA
4263200 AAGAAAGAAA
1 AAGAAAGAAA
*
4263210 AAGAAAAAAA
1 AAGAAAGAAA
4263220 AAGAAAAGAAA
1 AAG-AAAGAAA
*
4263231 TAGAAA
1 AAGAAA
4263237 ATAAATGGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 24 0.75
11 8 0.25
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:4263216 original size:16 final size:15
Alignment explanation
Indices: 4263195--4263236 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
4263185 CATGGAAGAG
4263195 AGAAAAAGAAAGAAAA
1 AGAAAAAGAAAG-AAA
*
4263211 AGAAAAAAAAAGAAA
1 AGAAAAAGAAAGAAA
*
4263226 AGAAATAGAAA
1 AGAAAAAGAAA
4263237 ATAAATGGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (15 bp):
AGAAAAAGAAAGAAA
Found at i:4263221 original size:21 final size:21
Alignment explanation
Indices: 4263197--4263237 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
4263187 TGGAAGAGAG
4263197 AAAAAG-AAAGAAAAAGAAAA
1 AAAAAGAAAAGAAAAAGAAAA
*
4263217 AAAAAGAAAAGAAATAGAAAA
1 AAAAAGAAAAGAAAAAGAAAA
4263238 TAAATGGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAGAAAAAGAAAA
Found at i:4263235 original size:11 final size:11
Alignment explanation
Indices: 4263195--4263237 Score: 63
Period size: 10 Copynumber: 4.1 Consensus size: 11
4263185 CATGGAAGAG
4263195 AGAAAAAG-AA
1 AGAAAAAGAAA
4263205 AGAAAAAGAAA
1 AGAAAAAGAAA
4263216 A-AAAAAGAAA
1 AGAAAAAGAAA
*
4263226 AGAAATAGAAA
1 AGAAAAAGAAA
4263237 A
1 A
4263238 TAAATGGGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 18 0.60
11 12 0.40
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:4263263 original size:25 final size:25
Alignment explanation
Indices: 4263233--4263316 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 25
4263223 AAAAGAAATA
4263233 GAAAATAAATGGGCATGACCCAATG
1 GAAAATAAATGGGCATGACCCAATG
* *
4263258 GAAAATAAGTGGGCATGACCCAATA
1 GAAAATAAATGGGCATGACCCAATG
* * * *
4263283 AAAAATAAGTGGGCATGGCCTAATAG
1 GAAAATAAATGGGCATGACCCAAT-G
4263309 G-AAATAAA
1 GAAAATAAA
4263317 AATAAATGGG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.46, C:0.13, G:0.24, T:0.17
Consensus pattern (25 bp):
GAAAATAAATGGGCATGACCCAATG
Found at i:4263321 original size:31 final size:32
Alignment explanation
Indices: 4263283--4263344 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
4263273 TGACCCAATA
* *
4263283 AAAAATAAGTGGGCATGGCCT-AATAGGAAAT
1 AAAAATAAATGGGCATAGCCTAAATAGGAAAT
*
4263314 AAAAATAAATGGGCTTAGCCTAAATAGGAAA
1 AAAAATAAATGGGCATAGCCTAAATAGGAAA
4263345 AATGGAGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.48, C:0.10, G:0.23, T:0.19
Consensus pattern (32 bp):
AAAAATAAATGGGCATAGCCTAAATAGGAAAT
Found at i:4271793 original size:131 final size:132
Alignment explanation
Indices: 4271607--4271874 Score: 331
Period size: 131 Copynumber: 2.0 Consensus size: 132
4271597 AGGTGTTATA
* * * * * * *
4271607 GTTTACCTCGAGAAACATGAGGTGAAAGCTATCCGTTGATAATAAAAGGCTATTTAAAGTCACAC
1 GTTTACCTCGAGAAACATGAAGCGAAAGCTATACATTGACAAAAAAAGGCCATTTAAAGTCACAC
* * * *
4271672 ATGCCTTCGAAAGCCTTATTAGTCCCTTTAAATGGTATTATAATCTCATAATTGATTATAA-TTA
66 ATACCTTCGAAAGCCTTATTACTCCCTTTAAATGGTATTACAACCTCATAATTGATTATAAGTTA
4271736 AT
131 AT
* * * * **
4271738 GTTTACCTCGGGAAACATGAAGCGAAAGTTATACATTGACAAAAAAAGTCCATTTATAGTCACTT
1 GTTTACCTCGAGAAACATGAAGCGAAAGCTATACATTGACAAAAAAAGGCCATTTAAAGTCACAC
* * * *
4271803 ATACCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTACAACCTTATAATTGATTATAAGTTT
66 ATACCTTCGAAAGCCTTATTACTCCCTTTAAATGGTATTACAACCTCATAATTGATTATAAG-TT
4271868 AAT
130 AAT
4271871 GTTT
1 GTTT
4271875 TTACTTTTTA
Statistics
Matches: 114, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
131 105 0.92
133 9 0.08
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (132 bp):
GTTTACCTCGAGAAACATGAAGCGAAAGCTATACATTGACAAAAAAAGGCCATTTAAAGTCACAC
ATACCTTCGAAAGCCTTATTACTCCCTTTAAATGGTATTACAACCTCATAATTGATTATAAGTTA
AT
Found at i:4272027 original size:171 final size:170
Alignment explanation
Indices: 4271725--4273064 Score: 1306
Period size: 171 Copynumber: 7.9 Consensus size: 170
4271715 TCTCATAATT
* * ** * * *
4271725 GATTATAATT-AATGTTTACCTCGGGAAACATGAAGCGAAAGTTATACATTGACAAAAAAAGTCC
1 GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTTC
* * * * *
4271789 ATTTATAGTCACTTATACCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTACAACCTTATAA
66 ATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAA
* * *
4271854 TTGATTATAAGTTTAATGTTTTTACTTTTTATGTTAAAACA
131 TTGATTTTAAGTTGAATTTTTTTACTTTTT-TGTTAAAACA
* *
4271895 GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGCAAGCCATCGATTGACAAGAAAAGTTC
1 GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTTC
* * *
4271960 ATTTATAGTCACTCATGCCTTTTAAAGCCTAATTACTCGCGTTAAATGGTTTTATAATCTCATAA
66 ATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAA
*
4272025 TTGATTTTAAGTTGAATTTTTTTAACTTTTTGGTTAAAACA
131 TTGATTTTAAGTTGAATTTTTTT-ACTTTTTTGTTAAAACA
* * *** * * **
4272066 GATTATAATTTCAATATTTGTGTCG-GAAAACGTGAAGCAAAAGTCATCCATTGTGAAGAAAAGT
1 GATTATAA-TTGAATGTTTACCTCGAG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * ** *
4272130 TCATTTATATTCTCTCACACCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-ATTTCAT
64 TCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCAT
* ** *
4272194 AATTGATTTTAAGTTGATTTTTTTTAAGGTTTTTGTTAAAATA
129 AATTGATTTTAAGTTGAATTTTTTT-ACTTTTTTGTTAAAACA
* * * ** * * * ** *
4272237 GATTAGAATTGAATGTTTACCTCAAAAAATATGATGCGAATGTCATGTATTGACAA-AAGAAGTC
1 GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAA-AAGTT
* * *
4272301 CATTTATAAG-CGCTCATGCCTTTGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCTCAT
65 CATTTAT-AGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCAT
*
4272365 AATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAATA
129 AATTGATTTTAAGTTGAATTTTTTTAC-TTTTTT-GTTAAAACA
* * * * *
4272409 TATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATTCATTAAGAAGAAAAGTTC
1 GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTTC
* * * *
4272474 ATTTAGAGTCACTCATGCCTTCGAAAACCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
66 ATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAA
* * * *
4272539 TTGATTTTAAGCTCGATTTTTTTTCCATTTTTGATTAAAACA
131 TTGATTTTAAG-TTGAATTTTTTTACTTTTTTG-TTAAAACA
* * * * *
4272581 GATTATAATT-AATGTTTACCTC-AGGAAATGTGAGGCGAAAACCACCCATTGATAAGAAAAGTT
1 GATTATAATTGAATGTTTACCTCGA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTT
** * * * * * * *
4272644 TGTTTAAAGTCACTTATGCCTTCGAAAGCCTTGTTAGTGGC-TTAAATGGTTTTATAGTCTCATA
65 CATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATA
* * ** *
4272708 ATTG-CTTAAAGTTGAATTTTGGTACATTTTTGGTTAAAACA
130 ATTGATTTTAAGTTGAATTTTTTTAC-TTTTTTGTTAAAACA
* * * * *
4272749 GATTATAATTGAATGTTTACCTTGGGAAACGT-ATAGTGAAAGACATCCATTGACAAGAAAAGTC
1 GATTATAATTGAATGTTTACCTCGAGAAACGTGA-AGCGAAAGCCATCCATTGACAAGAAAAGTT
* * * * ** *
4272813 CATTTATACTCGC-CAATGGCATCAAAAGCCTTATTACTCGCTTTAAATGGTTTGATAA-CGTTC
65 CATTTATAGTCACTC-ATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC--TC
** * *
4272876 -TAATTGATTTT-A----AATTCATTT--TTTTTCGTTAAAATA
127 ATAATTGATTTTAAGTTGAATTTTTTTACTTTTTTGTTAAAACA
* * * *
4272912 GATTATAATTGAATGTTTACCT-TAGGAAATGTGAAGCGCAAGCCATCCATTGATAAGAAAAG-T
1 GATTATAATTGAATGTTTACCTCGA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTT
* * * * * * *
4272975 CTACTTATTGGCATTCATGCC-TTCATAAGCCTTATTACTC-ATTATAAATAGTTTTATAATCTC
65 C-ATTTATAGTCACTCATGCCTTTGA-AAGCCTTATTACTCGCTT-TAAATGGTTTTATAATCTC
4273038 ATAATTGATTTTAAGTTGAATTTTTTT
127 ATAATTGATTTTAAGTTGAATTTTTTT
4273065 CAATTTTGTC
Statistics
Matches: 955, Mismatches: 178, Indels: 76
0.79 0.15 0.06
Matches are distributed among these distances:
162 7 0.01
163 113 0.12
164 4 0.00
166 5 0.01
168 35 0.04
169 81 0.08
170 142 0.15
171 309 0.32
172 246 0.26
173 13 0.01
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTTC
ATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAA
TTGATTTTAAGTTGAATTTTTTTACTTTTTTGTTAAAACA
Found at i:4276556 original size:171 final size:171
Alignment explanation
Indices: 4275937--4288035 Score: 12130
Period size: 171 Copynumber: 70.7 Consensus size: 171
4275927 GTTGTGACAA
* * * *
4275937 ATTTTATGATTAAAAAAGATTATAATTGAACGTTTGCCTTAGGAAACGTGAAGCGAAAGCCATCC
1 ATTTT-TGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * * * * *
4276002 ATTGACAAAAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGCCTTAGTAATCACTATGAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * *
4276067 CTGTTATAATCTCATAATTGATTTTGAGTTGAATTTTTTTTTTC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAA--TTTTTTTAC
*
4276111 TGTTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATC
1 --ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATC
* * * * * *
4276176 CATTGACACGAAAAGTTCATTTGTAGTCACTCATGCCTTCAAAACCCTTACTACTTGCTTTAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* *
4276241 TGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * *
4276284 ATTTTTTGGTTAAAACAGATTGTAGTTGAATCTTTCCCTCAGGAAACATGAGGCGAAAGCCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * * *
4276349 ATTGATAAGAAAAGGTT-ATTTAAAGTCACT-ATGCCTTCAAAAACCTTATTAGTCACTTTAAAT
65 ATTGACAAGAAAA-GTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * * *
4276412 GGTTTTATAATCTCATAATTGCTTTTCAG-TGCAATTTCTTTCC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTG-AATTTTTTTAC
* * * * * *
4276455 ATTTTTGGTTAAACCAGATTATAATTGAATATTTACCTTAGGAATCATGAAGCGAACGTCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * *
4276520 TTAAGAAGAAAAGTCCATTTATAATCACTCATGCCTTTGAAAGCCTTATTATTCGCTTTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* *
4276585 TTTTATAACCTCATAATTGATTTTAAGTTCAATGTTTTTTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAAT-TTTTTTAC
* * * * *
4276627 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTT-GAGAAACGTGACGCAAAAGTCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * * * * *
4276691 ATTAACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGGCTTATTAATCGCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
4276756 GTTTTATAATCTCATAATTGATTTTACA-TTGAA--TTTTTAC
130 GTTTTATAATCTCATAATTGATTTTA-AGTTGAATTTTTTTAC
* * * *
4276796 ATTTTTAGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGTGAAACCCCTCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * *
4276861 TTGACAAGAAAAGTTCATTTATAGTGACTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
*
4276926 TTTTCTAATCTCATAATTGATTTTAAGTTGAATTTTTTCTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT-TAC
* * * * *
4276968 ATTTTTGGTTAAAACAGATTATAATT-AATGTTGACC-TCGAGAAACATGAAGCGAAAGTCATAC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * *
4277031 ATTGATAAGAAAAGTCCATTTATAGTCACT-ATACCTTCGAAAGCCTTATTACTCGCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * *
4277095 GTTTTATAACCTTATAATTGATTTTAAGTTCAAATTTTTTAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * * *
4277137 TTTTTTAGTTAAAACAGATTATAGTTGAATGTTTCCCTCAAGAATCGTGAAGCGCAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * *
4277202 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAATTACTCGCGTTAAGTGA
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
*
4277267 TTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * *
4277308 CTTTTTGGTTAAAACAAATTATAAATCAATATTTACCTT-GGAAAACGTGAAGTGAAAGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGG-AAACGTGAAGCGAAAGCCATCC
* ** * *
4277372 ACTATG--AAGAAAAGTTCATTTATAGTCTCTCACACTTTTGAAAGCCTTATTACTCGCTTTAAA
65 A-T-TGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
*
4277435 TGGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTAT
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * * **
4277478 GTTTTTGGTTAAAACAGATGATAATTGAATGTTTACCTTGGGAAACATGATGCGAATGTCATGTA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * * *
4277543 TTCACAAGAGAAGTCCATTTATAAGT-GCTCATGCCTTTGAAAGCCTTATTACTCACTATAAATG
66 TTGACAAGAAAAGTTCATTTAT-AGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
4277607 GTTTTATAATCTCATAATTGATTTTAAGTTGAAATTTATTTT-C
130 GTTTTATAATCTCATAATTGATTTTAAGTTG-AATTT-TTTTAC
* * * * * * *
4277650 AATTTTTTGATTAAAATAGATTATAATTGAACGTTTGCCTTGGGAAATGTGAAGCGAAAGTCATC
1 -A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATC
* ** *
4277715 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAG-CTTGATTACTCGCTATAAA
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTT-ATTACTCGCTTTAAA
* * * *
4277779 TGATTTTATATTCTCATAATTGATTTTAAGTTGAATGTTTTTAT
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * *
4277823 ATTTTTTAGTTAAAACAGACTATAATTGAATGTTTACCTT-GAGAAACATGAAGC-AGAAGCCAT
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGA-AAGCCAT
* * * * * *
4277886 TCATTAAAAAAAAAAGTTCATTTAGAGTCACTCATGTCTTCGAAAGCCTTATTACTCGCTTTAAA
63 CCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
** * * *
4277951 TGGTTTTATAGCCTCATAATTGATTTGAAGTTCAACTTTTTTAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * *
4277995 ATTTTTGATTAAAATATATTATAATT-AATGTTTACGTCAGGAAACGTGAGGCAAAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * * * * *
4278059 TTGATAAGAAAAGTTTATTTAAAGTCAATTATACCTTCGAAAGCTTTATTAGTTGCTTTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
** * * *
4278124 TTTTATAATCTCATAATTGCCTTAAAGTTGAATTTTTGTAT
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* *
4278165 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTT-GAGAAATGT-ATAGC-AAACGGCAT
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGA-AGCGAAA-GCCAT
* * * *
4278227 CCATTGACAAGAAAAG-TCTATTTATAGTCACCCATGGCATCGAAAGCCTTATTACTTGCTTTAA
63 CCATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA
* * * * *
4278291 ATGGTTTGATAACCTTATAATTAATTTTAAGTTCAATTTTTTT-C
127 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * ** *
4278335 TTTTTTGGTTAAAATAGATTATAATTGAATGTTTGTCTTAGGAAACGTAAAGC-ACAAGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGA-AAGCCATCC
* * * * * ** *
4278399 GTCGATAAGAAAAGTCCATTTATAGTCATTCATGCCTTTAAAAGCCTTATTACTCGCTATAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
*
4278464 GTTTTATAATCTCATAATTGATTTTAAGTTGAACTTTTTT-C
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * *
4278505 AATTTTTTGTTTAAAACAGATTATTATTGAATGTTTACC-TCGAGAAACGTGAAGCGAAAGTCAT
1 -A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCAT
* * * * * * * * * * *
4278569 CCATTGAGAAGAAAAGTCCATTTGTAATAACCCATGCCTTTGAAAGCTTTAGTACTCGCTATGAA
63 CCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
*
4278634 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTTAT
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTAC
** *
4278679 ATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAATTGTGAAGC-ACAAGCTATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGA-AAGCCATC
* * * * * *
4278743 CATTGACACGAAAAGTCCATTTATAGTCA-ACATGCCTTCGAAACCCTTACTACTTGCTTTAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * *
4278807 GGTTTTCTAATCTCAGAATTGATTTTAAGTTAAATTTTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * ** *
4278850 ATTTTTTAGTTAAAACAGATTGTAATTGAATTTTTACCTCAGGAAATGAGTGGCGAAAGCTATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
** * *
4278915 ATTGGTAAGAAAAGGTT-ATTTAAAGTCACTCATGCCTTCGAAAGCC------CT---ATTAAAT
65 ATTGACAAGAAAA-GTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * *
4278970 GGTTTTATAATCTCATAATT-ACTTTTGA-TTGGAATGTTTTTCC
129 GGTTTTATAATCTCATAATTGA-TTTTAAGTT-GAATTTTTTTAC
** * * * * * **
4279013 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGATGTGAATGTCATGTA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * *
4279078 TTGACAAGAAAAGTCCATTTATAAG-CAGTCATGCCATT-GAAAGCCTTATTACTCGCTATAAAT
66 TTGACAAGAAAAGTTCATTTAT-AGTCACTCATGCC-TTCGAAAGCCTTATTACTCGCTTTAAAT
4279141 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTTA-
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAAT-TTTTTTAC
* * ** * * *
4279184 ATTTTTTGGTTAAAATAGATTATAATTGAACGTTGGCCTT-GTGAAATGTGAAGAGAAAGACATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * * * *
4279248 CATTGACAAGAAAAGTCCAGTTGTAGTCACTCATGCCTTTGAAAGCTTTATTACTCGCTATAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
4279313 GG-TTTATAATCTCATAATTGATTTTAAGTTGAA--TTTTT--
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * *
4279351 A------GTTAAAATAGATTATAATTGAATGTTTACCATGGGAAATGTGAAGCGGAAGCCATTCT
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * **
4279410 TTAAGAAGAAAAGTTCATTTAGAGTCACTCATGTCTTTGAAAGCCTTATTACTCATTTTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
** * * * *
4279475 TTTTATAGCCTCACAATTGATTTTAACTTCAATTTTTTTAT
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * *
4279516 ATTTTTGGTTAAAACAGATTATAATT-AATGTTTACCTTGGGAAACGTGAGGCGAAAAGTCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCG-AAAGCCATCC
* * * * * ** * * *
4279580 ATTAATAAGAAAAGTTTATTTAAAGTCACTTATAACTTCAAAACCCTTATTAGTCGCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * *
4279645 GTTTTATAATCTCATAATTGCTTTAAAGTTGAATTTTTATAT
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * *
4279687 ATTTTTGGTTGAAACAGATTATAATTGAATGTTT-GCATAGGGAAACGTGAAGCGAAAGCCAAT-
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTA-GGAAACGTGAAGCGAAAGCC-ATC
* * *
4279750 GATTGACAAGAAAAGTTCATTTATAGCCACTCATGCCTTCGAAAGCCTTATTACTCGCTATAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
*
4279815 GGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTCTTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTAC
* * * *** *
4279859 ATTTTTGGTTAAAACAGATTATAATT-AATATTTACCTT-GAGAAACATGAAGTGAAAGTTGTAC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * * * * * *
4279922 GTTGATAAGAAAAGTCCATTTATAGTTACTCATGCCTTCGAAAGCCTTACTAGTCACTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * *
4279987 GTTTTATAATCTCATAATT-ACTTTTGAGTGGAATTTGTTTTTC
130 GTTTTATAATCTCATAATTGA-TTTTAAGTTGAATTT-TTTTAC
* * * * * * *
4280030 ATTTTTGGTTAAAACAGATTATGATTGAAATGTGTGCCTCAAGAAATGTGAAGGGCAAA-CCATC
1 ATTTTTGGTTAAAACAGATTATAATTG-AATGTTTACCTTAGGAAACGTGAAGCG-AAAGCCATC
* * * * * * * * *
4280094 CGTTGATAAGAAAAGTACATTTGTAGGCATTCATG-CTCTCAAAAGTCTTATTACTCGCTATAAA
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCT-TCGAAAGCCTTATTACTCGCTTTAAA
*
4280158 TGGTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTTTTTA-
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAA--TTTTTTTAC
* * * * * * *
4280203 ATTTTTTAGTTAAAATAGATTACAATTGAATGTTTGCC-TCGAGAAACGTGAAGCAAAAGTCATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * * * * *
4280267 CGTTGACAAGAAAAATTCATTTGTAGTCACCCATACCTTTGAAAGCCTTATTACTCGCTATAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
** * * *
4280332 TATTTTATAATCTCCTAATTGATTTTAAGTTGAATTTCTTTGC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * *
4280375 ATTTGTGGTTAAAACAAATTATGAA-TGAATGTTTAGC-TAGGGAAACGTGAAGTGAAAGCCATC
1 ATTTTTGGTTAAAACAGATTAT-AATTGAATGTTTACCTTA-GGAAACGTGAAGCGAAAGCCATC
* * * * * ** *
4280438 CATTAAGAA-AACAAATTCATTTATAGTCACTCATCCCTTCAAAAATCTTATTACTCTCTTTAAA
64 CATTGACAAGAA-AAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
4280502 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * ** *
4280546 ATTTTTTAGTTAAAACAGATTGTAATTGACTGTTTGCCGCAGGAAATGTGAAGCGAAAGCCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * *
4280611 ATTGACACA-AAAAGTTCATTTGTAGTCACTCATACCTTCGAAAGCCTTATTACTCACTATAAAT
65 ATTGACA-AGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
** * *
4280675 TATTTTATAATCTCATAATTGATTTTAAGTTAAATTTCTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * * * ***
4280718 ATTTTTTGGTTAAAATAGGTTATGATTAAATGTTTTCCTT-GAGAAATGTGAAACAAAAATGATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * * * * *
4280782 CATTTACACGAAAA-ATCTATTTCTAGTCACTCATGCCTTCAAAAGCCTTATTACTCTCTATAAA
64 CATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
** * * *
4280846 TGGTTTTATCGTCTCATAATTGATTTTAAGTAGAATTTCTTTGC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * *
4280890 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTT-GGAAAGCATGAAGTGAAAGTCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAA-CGTGAAGCGAAAGCCATCC
* * * **
4280954 ATTGAAAAGAAAAGTTCATTTATAGTCACTCATCCCTTCAAAAAGCCTTATTACTCTTTTTAAAT
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTCGCTTTAAAT
4281019 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTGAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTT-AC
* * * * * * *
4281063 ATTTTTTAGTTAAAATAGATTATAATTGACTATTTACCTCAAGAAACATGAAGCGAAAGCCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * * *
4281128 ATTGACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGACTTATTATTCACTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
** **
4281193 GTTTTATAATCTCATAATTGATTTTAAAATG-ATTTTTTTTT
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * ** * * *
4281234 GTTTTTTGTTAAAACAGATTATAATTGAATGCTTAGGTTGGGAAACGTGAAGTGAAAGCCATCAA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * *
4281299 TTGAGAAGAAAAAGTTCATTTATAGTCACTCATCCCTTCGAAAGCCTTATTACTCTCTTTAAATG
66 TTGACAAG-AAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
*
4281364 GTTTTATAATCTTATAATTGATTTT-AGCTTGAATTTTTTTTAC
130 GTTTTATAATCTCATAATTGATTTTAAG-TTGAA-TTTTTTTAC
* * * * *
4281407 AGTTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCAGTAAACATGAAGCGAAAGTCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
** * * * * * *
4281472 ATTGGTAAGAAAAGTTCATTTATAGGT-AGTCATGGCTTCAAAACCCTTATTACTCACTATAAAT
65 ATTGACAAGAAAAGTTCATTTATA-GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * * * *
4281536 TGTTTTATAATCTCATGATTGATTTTAATTTGAATTTCTTTGC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * * ** *
4281579 ATTTTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTCAAGTAACATCAAGAAAAAGCCATT
1 A--TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATC
* * ** ** * *
4281644 CATTGACACA-AAAAATCCATTCGTAGTCACTCATATCTTCAAAAACCTTATTACTCGCTTTAAA
64 CATTGACA-AGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
* ** * *
4281708 TGGTTTTAAAATCTTGTAAATGTTTTTAAGTTGAA-TTTTTTATC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-C
* * * * * * **
4281752 -TTTTTGGTTAAAACATATTATAATTGAATGTTTAACTCAGAAAACATGAAG-TAAATGTTATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAA-GCCATCC
* * * * * *
4281815 ATTGACAAGAGAAG-TCAATTTATAGGT-AGTCATGGCTTCAAAACCCTTATTACTCGCTATAAA
65 ATTGACAAGAAAAGTTC-ATTTATA-GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
* * *
4281878 TGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTCTTTGC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * ** * * *
4281922 ATTTGTGGTTAAAACAGATTATGATTGAATGTTTATC-AAGGGAATTGTGAAGTGGAAGCTATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTA-GGAAACGTGAAGCGAAAGCCATCC
* * * * *
4281986 ATTAAGAAGAAAAGTTCATTTATAGTCACTCATCCCCTCGAAAGCCTTATTACTCTCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * *
4282051 ATTTTATACTCTCATAATTGATTTTAAGTTGAATTTGTTTAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * *
4282093 ATTTTTTGCTTAAAACAGATTATAATTGAATGTTTGCCTTAGAAAACATGAAGCGAAAGCCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
*** * * * * * ** *
4282158 ATTGATGCGAAAAGTACATTTGTAGTTACTCATGCCTT-TAAAGACTTATTACTTTCTTTAAATA
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* *
4282222 GTTTTATAATCTCATAATTGATTTTAAGATGAATTTTTTTAT
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * *
4282264 GTTTTTGGTTAAAACAGATTATAATTGATTGTTTACCTCAGGAAACATGAAGCGAAAGTCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * * *
4282329 TTGACAAGAAAAGTCCATTTATAGGT-AATCATGGCTTCAAAACCCTTATTACTCACTATAAATG
66 TTGACAAGAAAAGTTCATTTATA-GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
*
4282393 ATTTTATAATCTCATAATTGATTTTAAGTTGAATTTCTTTGTA-
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTT-TTT-TAC
* * * * * * *
4282436 TTTTTTAGTTAAAATAGATTATAATTGAATGTTTGCCTT-GGAAAACATGAAGCAAAAGCCATCT
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGG-AAACGTGAAGCGAAAGCCATCC
* * * * * *
4282500 ATTGACATGAAAAGTCCATTTGTAGTCACTTATACCTTCAAAAGCCTTATTACTCGCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * *
4282565 GTTTTATAATCTCCTAAATGTTTTTAAGTTGAATTTTTTTTAT
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTAC
* * * * * * **
4282608 ATTTTTGGTTAAAACATATTATAATTGAATGTTTATCTCAGGAAACATGACGC-AAATGTCATAT
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAA-GCCATCC
* * *
4282672 ATTAACAAGAAAAG-TCTATTTATACG-CACTTATGCCTTCGAAAGCCTTATTATTCGCTTTAAA
65 ATTGACAAGAAAAGTTC-ATTTATA-GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
** *
4282735 CAGTTTTATAATCTCCTAATTGATTTTAAGTTGAAATTTTTTATA-
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTG-AATTTTTT-TAC
** * * * * * * *
4282780 ATTTTTCAATTAAAACGGGTTTTAATTGAATGTTTGCCTT-GAGAAATGTGAAGTGAAAGCAATC
1 ATTTTT-GGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * * *
4282844 CATTAAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGACTTATTACTTGCTTTAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * * *
4282909 GGTTTTATAACCTCATAACTGATTTTAAGTTTAATTTTTTTTTC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTAC
* * * * * * *
4282953 ATTTTTGGTT-AAACAAATTCTAATT-AATGTTTACC-TCGGAAAACTTGAGGCAAAACCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGG-AAACGTGAAGCGAAAGCCATCC
* * * * * * * *
4283015 ATTGATAAGAAAAGTTTATTTAAATTCACCCATACCTTTGAAAGCCTTATTAGTCGCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * *
4283080 GTTTTATAATCTCATAATTGCTTTTAATTTGAA-TTTTATAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * *
4283121 ATATTTGGTTAAAAGAGATTATAGTTGAATGTTTACCTCTA-GAAACATGAAGCGAAA-CACATC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-TAGGAAACGTGAAGCGAAAGC-CATC
* * * ** * *
4283184 TATTAACAAGAAAAGTTTATTTATAGTCACTCATAACTTTGAAAGCCTTATTACTTGCTTTAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * *
4283249 GGTTTTATAACCACATAATTGATTTTAAGTTCAATTTTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * ** * * *
4283292 ATTTTTGGCTAAAACATATCGTAGTT-AATGTTTACC-TCGAGAAACGT-AAGGCGAAAGTCATC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAA-GCGAAAGCCATC
* * * * * * *
4283354 CATTGATAAGAAAAATTTATTTAAAGTCACTCATGCATTCGGAAAGCCTTATTAATTGCTTTAAA
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTCGCTTTAAA
* * *
4283419 TGATTTTATAATCTCATAATTGCTTTTAAGTTGAATTTTTATAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * ** *
4283463 ATTTTTGGTTAAAGCGGGTTATAATTGAATGTTTATC-TCGAGAAACGTGAAGTAAAAGGCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* ** * *
4283527 ATTAACAAGAAAAGGCCATTTATAGTCACTTATGCCTTCGAAAGCCTTATTACTCACTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * *
4283592 GTTTTATAACCTCATAATTGATTTTAAGTTCATTTTTTTTAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * *
4283634 CTTTTTGGTTGAAAACAGATTACAATTGAATGTTTACC-TCGAGAAATGTGAGGTGAAAGCTATC
1 ATTTTTGGTT-AAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * * ** * * * *
4283698 CATTGACAAGAAAAGTTTACTGAAAGTCACTTTTACCTTTGAAAGCCTTATTA-TCCACTATAAA
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT-CGCTTTAAA
* *
4283762 TGATTTTATAATCTCATAATTGATTTGAAGTTGAATTTTTTTAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * *
4283806 ATTTTTTGGTAAAAACAGATTATAATTGAATGTTT-GCTTGAGGAAACCTGAGGCGAAAGCCATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTT-AGGAAACGTGAAGCGAAAGCCATC
* * * * * *
4283870 GATTGATAAGAAAAGGTT-ATTTAAAGTCACTCATACCTTCGAAAGCTTTATTAGTCGCTTTAAA
64 CATTGACAAGAAAA-GTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
* *
4283934 TGGTTTTATAACCTCATAATTGATTTTAAGTTCAATTGTTTTTAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTAC
* * * * * *
4283979 ATTTTTGGTTAAACCAAATTATAATTGAATGTTTACC-TAGGGAAACGTGAGGTGAAAGCAAGCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTA-GGAAACGTGAAGCGAAAGCCATCC
* * * * * *
4284043 ATTGATAAGAAAAGTTTATTTAAAGTCACTTATGCCTTCGAAAGCCTTATTAGTCACTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * *
4284108 GTTTTATACTCTCATAATAGCTTTTAAGTTGAATTTTTTTAT
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * *
4284150 ATTTTTTAGTTAAAACAGATTATGATTGAATGTTTCCCTT-GAGAAATGTGAAGTGAAAGCCATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
*
4284214 CATTAAGA-AAG-AAA-TTCATTTATAGTCACTCAAGCCTTCGAAAGCCTTATTACTCGCTTTAA
64 CATT--GACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA
* * * *
4284276 ATAGTTTTATAACCTCATAATTGATTTTAAGTTCAATTTTTTAAC
127 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * *
4284321 ATTTTTGGTTAAAACAAACTATAATTGAACGTTTATC-TCGAGAAACGTGAGGTGAAAGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * * * * *
4284385 ATTAATC-AGAAAAGGTT-ATTTAAAGTCACTCATGCTTTCGAAAGCCTTGTTACTTGCTTGAAA
65 ATTGA-CAAGAAAA-GTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
*
4284448 TGGTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* ** ** *
4284492 ATTTTTTGTTAAAACAGATTATAATTGAATGTTTGTCTTAGGAAACAAGAAGTGAAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
** ** * * * * *
4284557 TTGGGAAGAAAAGTTTTTTTAAAGTCACTAATGCCTTCAAAAGCCTTATTACTCACTATAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* *
4284622 TTTTCTAATCTCATAATTGATTTTAAGTTCAATTTTTTTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * *
4284663 CTTTTTGGTTAAAATAGATTATAATTGCATGTTTACCTTAAGAAATGTGAAGCGAAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * * * **
4284728 ATAAGAAGAAAAGTTCATTTATAGTTACTCTTGCCTTCGAAAGCCTTATTACTCACTTTGAATAA
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * *
4284793 TTTTATAATCACATAATTGATTTTGAGTTGAATGTTTTTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * *
4284834 ATTTTTTGGTTAAAAAAGATTATAATTGAATGGTTGCCTTAGGAAACATGAAGCGAAAGCCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * * * *
4284899 ATTGAAAAGAAAAGTCCACTTGTAGTCACTCATGCCTTCAAAAGCCTTATTACTTGCTTTGAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * **
4284964 GTTTTATAATCCCATAAATGGTTGAAAGTTGAATTGTTTTT-C
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTAC
* * * * * *
4285006 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTTGGGAAATGTGAGGCGAAAGTCGTCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * *
4285071 TTGACAAGAAAAGTTTATTTAAAGTCGCTCATGCCCTT-GAAAGCCATATTACTCACTATAAATG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATG-CCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * * * *
4285135 GTTTTAAAATCTGATAATAGATTTTAAATTGAATTTTTATAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* *
4285177 ATTATTGGTTAAAACAGATTATAATTGAATGTTTACC-T---CAACGTGAAGCGAAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * *
4285238 TTGACAACAAAAGTTCATTTATAGTGACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* *
4285303 TTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTTAT
131 TTTTATAATCTCATAATTGATTTTAAGTTG---------A-ATTTTTTTAC
* * * * * ** *
4285354 ATTTTTTGATTAAAACAGATTAGAATTGAATGTTTGCCTCATGAAACAAGAAGCGAAAGTCATCC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * * * * * * *
4285419 ACTGACAAGAAAAGTCCACTTGTGGTTACTCATGCTTTCAAAAGCCTTATTACTTGCTATAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* *
4285484 GTTTTATAATCTCATAATTGGTTTTAAGTTGAATTTTCTTACC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-C
* * * * *
4285527 TTTTTTGGATAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAA-CTGAAAGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGC-GAAAGCCATCC
* * ** *
4285591 ATTGACACGAAAAG-TCTATTTGTAGTCACTCACACCTTCGAAAGCCTTATTACTTGCTTTAAAT
65 ATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* *
4285655 GGTTTTACAATCTCATATTTGATTTTAAGTTGAATTTTTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTAC
* * * * * *
4285699 ATTTTTCTGGTGAAAACATATTATAATTGAATATTTA-CTTCCA-AAAACGTGATGTGAAAGCCA
1 A-TTTT-TGGTTAAAACAGATTATAATTGAATGTTTACCTT--AGGAAACGTGAAGCGAAAGCCA
* *
4285762 TCCATT-AGCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTA
62 TCCATTGA-CAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTA
* * *
4285826 AATGGTTTTATGATCTCATAATTGCTTTTAAGTTGAATTTTTGTAC
126 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * **
4285872 AATTTTGCTTAAAACAGATTATAATTGAATGTTTGCCTTAGGAAACGTGAAACGGAAGCCATATA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * * *
4285937 TTTACACGAAAAG-TCTATTTGTAGTCACTCATGCCTTCAAAAGCCTAATTACTTGCTTTAAATA
66 TTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
4286001 GTTTTATAATCTCATAATT-ATTTTTAAGTTGAATTTTTTTTAC
130 GTTTTATAATCTCATAATTGA-TTTTAAGTTGAA-TTTTTTTAC
* ** ** * *
4286044 ATTTTTTGGCTAAAATGGATTATAATTGAATGTTT-GTTTCGAGAAATGTGAAGCGAAAGCCATC
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATC
* * * * *
4286108 CATT-AGGAAGAAAAGTTCATTAATAGTCACTTATGCCTTCGAAAGCTTTATTACTCACTTTAAA
64 CATTGA-CAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
* * * * *
4286172 TGGTTTTATAACCTAATAATTGATTTTAAGTTCAA-GTTTTTAT
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * *
4286215 ATTTTTGGTGAAAACAGATTGTAATT-AATGTTTACCTCAAGAAACGTGAGGC-AAATGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAA-GCCATCC
* * * *
4286278 ACTGACAAGAAAAGTTTATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTAGTCGCTTTAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* *
4286343 GTTTTATAATCTCATAATTGCTTTTAAGTTGAATTTTTGTAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* *
4286385 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTATC-TAGGGAAACGTG-AGACGAAAGCAATC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTA-GGAAACGTGAAG-CGAAAGCCATC
* * * * * *
4286448 CATTGATAAGAAAAGTTTATTTAAAGTCACTCATACCTTCGAAAGCCTTATTAGTCACTTTAAAT
64 CATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* *
4286513 GGTTTTATAATCTCATAATTGCTTTTAAGTTGAATTTTATTTCC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT-TTTAC
* * * * * *
4286557 ATTTTTTGTTAAAACCGATTATAATTGAATGTTTACCTTAAGAAACATGAAGGGAAAGTCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * *
4286622 TTGATAAGAAAAGTCCATTTATATTCACTCATGCCTTCGAAAACCTTATCACTCGCTCTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * * * *
4286687 TTTTATAATCTTATAATTGAATTTAAGTTCAATTGTTTTAT
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * * *
4286728 ATTTTTGGTTAAAACATATTATAATTGAATATTTGCCCTAAGAAATGCGAGGCGAAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * * * * *
4286793 TTAACAAGAACAGTTTATTTAAAGTCACTCATGCCTTTGAAAGCCATATTACTTGCTATAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* *
4286858 TTTTATAATCTCATAGTTGATTTTAAGTTGAATTTGTTTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * *
4286899 ATTTTTTGGTTAAAACAGATTATAATTGAATATTTACCTCAGGAAACATGAAGCAAAAGTCATCT
1 A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
** * * * ** * *
4286964 AGAGACAAGAAAAGTTTATTTATAGTTACTTATGCCTTTAAAAGCCTTATTACTCACTATAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
4287029 GTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * * * *
4287070 ATTTTTAGTTAAAAAAAAGTATAATTGAATGTTTATCTTGGGAAACATGATGTGAAAGCCATCCA
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
* * * * *
4287135 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATCACTCACTCTAAATGG
66 TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * * * * *
4287200 TTTTGTAACCTTATAATTGATTTTAAGCTCAATTGTTTTAC
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * ** * * *
4287241 ATTTTTGGTTAAAA-AGATTATAATTGAATGTTTGCC-TCGAAAAATATGAGGCGAAAGTCGTCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * * * * * *
4287304 ATTGACAAGAAAAGTTTATTTAAAGTCACTCATACCTTTGAAAGCCATATTACTCACTATAAATG
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
*
4287369 GTTTTATAATCTCATAAGTGATTTTAAGTTGAATTTTTTTAC
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * *
4287411 ATTTTTGGTTAAAATAGATTATAATTAAATGTTTACCTT-GAGAAACATGAAGCGAAAGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * * * **
4287475 ATTGGCAAGAAAAGTTTATTTATAGTGACTGATGCCTTCGAAAGCCTTATTACT-TTTTTAAAAT
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTT-AAAT
* *
4287539 GATTTTATAATCTCATAATTGATTTTGAGTTGAA-TTTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* * * * * * *
4287581 ATTTTTAGTTAACAA-AGAGTACAATTGAATGTTTATCTTGGGAAACGTGATGTGAAAGCCATCC
1 ATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCC
* * * * *
4287645 ATTGACAAGAAAAG-TCTATTTATAGTCACTTATGCCTTCGAAAGCCTTATCACTCACTCTAAGT
65 ATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
* * * *
4287709 AGTTTTATAACCTTATAATTGATTTTAAGTTCAATTTTTTTTAC
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTAC
* * * ** *
4287753 GTTTTTGTTTAAAACAGATTATAATTGAATGTTTGCC-TAGGGAAATATGAGGCGAAAGCCATCC
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTA-GGAAACGTGAAGCGAAAGCCATCC
* * * * ** * *
4287817 ATTGACAAGAAAAATTTATTTAAAGTCACTCATGCTTTTAAAAG-CTATATTACAC-ATTATAAA
65 ATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCT-TATTACTCGCTT-TAAA
* *
4287880 TGGTTTTATAATTTCATAATTGA-TTTAAGTTTAATTTTTTTAC
128 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
* ** * * * *
4287923 TTTTTTTATTAAAACAGATTATAATTGATTATTTACCTT-GAGAAACATGAAGCGAAAGCCATCT
1 ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAG-GAAACGTGAAGCGAAAGCCATCC
* * * *
4287987 ATTGACACGAAAA-CTCTACTTGTAGTCACTCATGCCTTCGAAAAGCCTT
65 ATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCG-AAAGCCTT
4288036 TTTTTTTGCT
Statistics
Matches: 9886, Mismatches: 1748, Indels: 583
0.81 0.14 0.05
Matches are distributed among these distances:
160 101 0.01
161 29 0.00
162 83 0.01
163 48 0.00
165 1 0.00
166 6 0.00
167 96 0.01
168 29 0.00
169 310 0.03
170 1815 0.18
171 2979 0.30
172 2740 0.28
173 905 0.09
174 450 0.05
175 147 0.01
176 5 0.00
177 9 0.00
178 32 0.00
182 101 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (171 bp):
ATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTAGGAAACGTGAAGCGAAAGCCATCCA
TTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
Found at i:4285349 original size:10 final size:10
Alignment explanation
Indices: 4285334--4285360 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
4285324 TTTAAGTTGA
4285334 ATTTTTTTAT
1 ATTTTTTTAT
4285344 ATTTTTTTAT
1 ATTTTTTTAT
4285354 ATTTTTT
1 ATTTTTT
4285361 GATTAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:4288132 original size:119 final size:120
Alignment explanation
Indices: 4287931--4288147 Score: 285
Period size: 119 Copynumber: 1.8 Consensus size: 120
4287921 ACTTTTTTTA
* * * *
4287931 TTAAAACAGATTATAATTGATTATTTACCTTGAGAAACATGAAGCGAAAGCCATCTATTGACACG
1 TTAAAACAGATTATAATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCATCTATTGACAAG
* * *
4287996 AAAACTCTACTTGTAGTCACTCATGCCTTCGAAAAGCCTTTTTTTTTGCTTTTGG
66 AAAACTCCACTTATAGTCACCCATGCCTTCGAAAAGCCTTTTTTTTTGCTTTTGG
* * *
4288051 TTAAAACAGATT-TAATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCT-TTGACAA
1 TTAAAACAGATTATAATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCAT-CTATTGACAA
* * * *
4288114 GAAAAGTCCATTTATAGTCGCCCATGCTTTCGAA
65 GAAAACTCCACTTATAGTCACCCATGCCTTCGAA
4288148 GGCTTTATTA
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
119 68 0.83
120 14 0.17
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (120 bp):
TTAAAACAGATTATAATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCATCTATTGACAAG
AAAACTCCACTTATAGTCACCCATGCCTTCGAAAAGCCTTTTTTTTTGCTTTTGG
Found at i:4288305 original size:290 final size:290
Alignment explanation
Indices: 4287755--4288319 Score: 654
Period size: 290 Copynumber: 1.9 Consensus size: 290
4287745 TTTTTTACGT
* * * * *
4287755 TTTTGTTTAAAACAGATTATAATTGAATGTTTGCCTAGGGAAATATGAGGCGAAAGCCATCCATT
1 TTTTGGTTAAAACAGATTATAATTAAATGTTTACCTAGAGAAACATGAGGCGAAAGCCATCCATT
** * *
4287820 GACAAGAAAAATTTATTTAAAGTCACTCATGCTTTTAAAAGCTATATTACACATTATAAATGGTT
66 GACAAGAAAAATCCATTTAAAGTCACCCATGCTTTCAAAAGCTATATTACACATTATAAATGGTT
* ** * * *
4287885 TTATAATTTCATAATTGATTTAAGTTTAATTTTTTTACTTTTTTTATTAAAACAGATTATAATTG
131 TTATAATCTCATAATTGATTTAAGTGGAATTTTTTTACATTTTTGATTAAAACAGATTATAATTA
* * * * * *
4287950 ATTATTTACCTTGAGAAACATGAAGCGAAAGCCATCTATTGACACGAAAACTCTACTTGTAGTCA
196 AATATTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAATCTACTTCTAGTCA
4288015 CTCATGCCTTCGAAAAGCCTTTTTTTTTGC
261 CTCATGCCTTCGAAAAGCCTTTTTTTTTGC
* * * *
4288045 TTTTGGTTAAAACAGATT-TAATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCTTT
1 TTTTGGTTAAAACAGATTATAATTAAATGTTTACCTAGAGAAACATGAGGCGAAAGCCATCCATT
* * * * * * *
4288109 GACAAGAAAAGTCCATTTATAGTCGCCCATGCTTTCGAAGGCTTTATTAGTTAC-TT-TAAATGG
66 GACAAGAAAAATCCATTTAAAGTCACCCATGCTTTCAAAAGCTATATTA--CACATTATAAATGG
* * * * * *
4288172 TTTTATAATCTCATCATTGCTTTTGAGTGGAATTTATTTT-CATTTTTGGTTATAGCAGATTATA
129 TTTTATAATCTCATAATTG-ATTTAAGTGGAATTT-TTTTACATTTTTGATTAAAACAGATTATA
* * * * * *
4288236 ATTAAATGTTTACCTCGGGAAACATGAAGTGAAAGTCATCCATTGATAAGAAAAATCGT-TTTCT
192 ATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAATC-TACTTCT
4288300 AGTCACTCATGCCTTCGAAA
256 AGTCACTCATGCCTTCGAAA
4288320 CCTTATTACT
Statistics
Matches: 226, Mismatches: 44, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
289 101 0.45
290 118 0.52
291 7 0.03
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (290 bp):
TTTTGGTTAAAACAGATTATAATTAAATGTTTACCTAGAGAAACATGAGGCGAAAGCCATCCATT
GACAAGAAAAATCCATTTAAAGTCACCCATGCTTTCAAAAGCTATATTACACATTATAAATGGTT
TTATAATCTCATAATTGATTTAAGTGGAATTTTTTTACATTTTTGATTAAAACAGATTATAATTA
AATATTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAATCTACTTCTAGTCA
CTCATGCCTTCGAAAAGCCTTTTTTTTTGC
Found at i:4288381 original size:461 final size:460
Alignment explanation
Indices: 4287603--4288495 Score: 1080
Period size: 461 Copynumber: 1.9 Consensus size: 460
4287593 CAAAGAGTAC
* * * * * *
4287603 AATTGAATGTTTATCTTGGGAAACGTGATGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTAT
1 AATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
** * *
4287668 AGTCACTTATGCCTTCGAAAGCCTTATCACTCACTCTAAGTAGTTTTATAACCTTATAATTGATT
66 AGTCACCCATGCCTTCGAAAGCCTTATCACTCACTCTAAATAGTTTTATAACCTCATAATTGATT
* * * * * *
4287733 TTAAGTTCAATTTTTTTTACGTTTTTGTTTAAAACAGATTATAATTGAATGTTTGCCTAGGGAAA
131 TTAAGTGCAATTTATTTTACATTTTTGGTTAAAACAGATTATAATTAAATGTTTACCTAGGGAAA
* * * * * *
4287798 TATGAGGCGAAAGCCATCCATTGACAAGAAAAATTTATTTAAAGTCACTCATGCTTTTAAAAGCT
196 CATGAAGCGAAAGCCATCCATTGACAAGAAAAATGTATTTAAAGTCACTCATGCCTTCAAAACCT
* * *
4287863 ATATTACACATTATAAATGGTTTTATAATTTCATAATTGATTTAAGTTTAATTTTTTTACTTTTT
261 ATATTACACATTATAAATGGTTTTATAACTTCATAATTGATTTAAGTTGAATTTTTTTACATTTT
* * * * *
4287928 TTATTAAAA-CAGATTATAATTGATTATTTACCTTGAGAAACATGAAGCGAAAGCCATCTATTGA
326 TGATTAAAATC-GATTATAATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGA
* *
4287992 CACGAAAACTCTACTTGTAGTCA-CTCATGCCTTCGAAAAGCCTTTTTTTTTGCTTTTGGTTAAA
390 CAAGAAAACTCCACTTGTAGTCATC-CATGCCTTCG-AAAGCCTTTTTTTTTGCTTTTGGTTAAA
4288056 ACAGATTT
453 ACAGATTT
*
4288064 AATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCTTTGACAAGAAAAGTCCATTTAT
1 AATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * * * * * * * * *
4288129 AGTCGCCCATGCTTTCGAAGGCTTTATTAGTTACTTTAAATGGTTTTATAATCTCATCATTGCTT
66 AGTCACCCATGCCTTCGAAAGCCTTATCACTCACTCTAAATAGTTTTATAACCTCATAATTGATT
* * * * *
4288194 TTGAGTGGAATTTATTTT-CATTTTTGGTTATAGCAGATTATAATTAAATGTTTACCTCGGGAAA
131 TTAAGTGCAATTTATTTTACATTTTTGGTTAAAACAGATTATAATTAAATGTTTACCTAGGGAAA
* * * ** *
4288258 CATGAAGTGAAAGTCATCCATTGATAAGAAAAATCGT-TTTCTAGTCACTCATGCCTTCGAAACC
196 CATGAAGCGAAAGCCATCCATTGACAAGAAAAAT-GTATTTAAAGTCACTCATGCCTTCAAAACC
*
4288322 T-TATTACTCACTT-TAAATGGTTTTATAACCTT-ATAATTGATTTTAAGTTGAATTTTTTTTAC
260 TATATTACACA-TTATAAATGGTTTTATAA-CTTCATAATTGA-TTTAAGTTGAA-TTTTTTTAC
* * * *
4288384 ATTTTTGGTTAAAATCGATTATAATTAAATGTTTACCTCGAGAATCATGAGGCGAAAGCCATCCA
321 ATTTTTGATTAAAATCGATTATAATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCATCCA
* * * *
4288449 TTGATAAGCAAAGTCCATTTGTAGTCATCCATGCCTTCGAAAGCCTT
386 TTGACAAGAAAACTCCACTTGTAGTCATCCATGCCTTCGAAAGCCTT
4288496 ATTAGTTGCT
Statistics
Matches: 360, Mismatches: 65, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
459 31 0.09
460 112 0.31
461 215 0.60
462 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (460 bp):
AATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
AGTCACCCATGCCTTCGAAAGCCTTATCACTCACTCTAAATAGTTTTATAACCTCATAATTGATT
TTAAGTGCAATTTATTTTACATTTTTGGTTAAAACAGATTATAATTAAATGTTTACCTAGGGAAA
CATGAAGCGAAAGCCATCCATTGACAAGAAAAATGTATTTAAAGTCACTCATGCCTTCAAAACCT
ATATTACACATTATAAATGGTTTTATAACTTCATAATTGATTTAAGTTGAATTTTTTTACATTTT
TGATTAAAATCGATTATAATTAAATATTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGAC
AAGAAAACTCCACTTGTAGTCATCCATGCCTTCGAAAGCCTTTTTTTTTGCTTTTGGTTAAAACA
GATTT
Found at i:4288389 original size:171 final size:171
Alignment explanation
Indices: 4288045--4290013 Score: 2314
Period size: 171 Copynumber: 11.5 Consensus size: 171
4288035 TTTTTTTTGC
* * * * *
4288045 TTTTGGTTAAAACAGATT-TAATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCTTT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * * * * * **
4288109 GACAAGAAAAGTCCATTTATAGTCGCCCATGCTTTCGAAGGCTTTATTAGTTACTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * * *
4288174 TTATAATCTCATCATTGCTTTTGAGTGGAATTTATTTT-CAT
131 TTATAATCTCATAATTGATTTTAAGTTGAATTT-TTTTACAT
* * * * *
4288215 TTTTGGTTATAGCAGATTATAATTAAATGTTTACCTCGGGAAACATGAAGTGAAAGTCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * ** * *
4288280 GATAAGAAAAATCGTTTTCTAGTCACTCATGCCTTCGAAA-CCTTATTACTCACTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* *
4288344 TTATAACCTTATAATTGATTTTAAGTTGAATTTTTTTTACAT
131 TTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACAT
* * * *
4288386 TTTTGGTTAAAATC-GATTATAATTAAATGTTTACCTCGAGAATCATGAGGCGAAAGCCATCCAT
1 TTTTGGTTAAAA-CAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCAT
* * * * *
4288450 TGATAAGCAAAGTCCATTTGTAGTCA-TCCATGCCTTCGAAAGCCTTATTAGTTGCTTTAAATGG
65 TGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * * * *
4288514 TTTTATAAACTCTTAATTGCTTTTGAGTGGAATTTTTTTTACAT
129 TTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACAT
* * *
4288558 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACATGAAGCAAAAGTCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
*
4288623 GAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* *
4288688 TTATAACCTCATAATTGATTTTAAGTTCAATTTTTTTACAT
131 TTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* * * *
4288729 TTTTGGTTAAAATAGATAATAATTGAATGTTTGCCTTGGG-AA-ATGAAAGCTGAAAGCCATCCA
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATG-AAGC-GAAAGCCATCCA
* * ** * * * * * *
4288792 TTGCCAAAAAAAGTTTATTTAAAGTCACTCAAGCCTTCAAAAGCCTTATTACTCACTATAAATTG
64 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * * *
4288857 TTTTATAATCTCATAATTGATTTTTAGTTAAATTTTCTTAC-C
129 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* *
4288899 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * * * * * * * * *
4288964 AAGAAGAAAAGTTCATTTATATTCAGTCATACCTTTGAGAGCCTTATTACTCACTATAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* *
4289029 TTATAATCTCATAATTGATTTTGAGTTGCATTTTTTTTTACATT
131 TTATAATCTCATAATTGATTTTAAGTTG-A-ATTTTTTTACA-T
* * *
4289073 TTTTGGTTAAAACCGATTATAATTGAATGTTTATCTCGGGAAACATGAAGCGAAAGACATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * *
4289138 GATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATCACTCGCTCTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * * *
4289203 TTATAACCTTATAATTGATTTTAAGTTCAACTTTTTTACAT
131 TTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* * * * ** * * *
4289244 TTTTGGTTAAAACAGATTATAAGTGAATGTTTGCCACAGGAAATGTGAGGCGAAA-CCTGTTCAT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCC-ATCCAT
** * * * *
4289308 TGACAAGAAAAGTTTATTTACT-GTCACTCATGCTTTTGAAAGCCATATTACTCGCTATAAATGG
65 TGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * *
4289372 TTTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTAATAT
129 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* * ** *
4289415 TTTTGATTAAAACAGATTATAATTGAA-GTTTACCTCAGGAAATGTGATGCGAAAGCCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * *
4289479 GACAAGAAAATTTCATTTATAGTGACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
*
4289544 TTATAATCTGATAATTGATTTTAAGTTGAATTTTTTTACAT
131 TTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* * ** ** * * *
4289585 TCTTGTTTAAAACAGATTATAATTGAATGTTTACCTCAAGAAATGTGATGTGAAAACCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * * *
4289650 GACAAGAAAAGTCCATTTGTACTCACTCATGCCTTCGAAAGCCTTATTAGTCACTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * *
4289715 TTATAATCTCATAATTGCTTTTGA-TTGGATTTTTTTACAT
131 TTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* *
4289755 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGGGAAACATGAAGCGAAAGTCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
* * * * * *
4289820 GA-TAGCAAAAGTCGATTTCTAGCCACTCACGCCTTCGAAA-CTTTATTACTCGCTTTAAATGGT
66 GACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGT
* *
4289883 TTTATAAACTTATAATTGATTTTAAGTTGAA-TTTTTTACAT
130 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
* * * * * *
4289924 TTTTGGTTAAAATC-GATTATAATTCAATATTTACCTTGGGAATCGTGAGGCGAAAGCCATCCAT
1 TTTTGGTTAAAA-CAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCAT
* * *
4289988 TGATAAGTAAAGTCCATTTGTAGTCA
65 TGACAAGAAAAGTCCATTTATAGTCA
4290014 TACATTGTCA
Statistics
Matches: 1543, Mismatches: 231, Indels: 51
0.85 0.13 0.03
Matches are distributed among these distances:
169 130 0.08
170 453 0.29
171 604 0.39
172 216 0.14
173 2 0.00
174 138 0.09
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (171 bp):
TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATT
GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
TTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
Found at i:4289009 original size:341 final size:340
Alignment explanation
Indices: 4288045--4290013 Score: 2235
Period size: 341 Copynumber: 5.8 Consensus size: 340
4288035 TTTTTTTTGC
* * * * *
4288045 TTTTGGTTAAAACAGATT-TAATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCTTT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCG-GGAACATGAAGCGAAAGCCATCCATT
* * * * * * * **
4288109 GACAAGAAAAGTCCATTTATAGTCGCCCATGCTTTCGAAGGCTTTATTAGTTACTTTAAATGGTT
65 GATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * * ** * * *
4288174 TTATAATCTCATCATTGCTTTTGAGTGGAATTTATTTTCATTTTTGGTTATAGCAGATTATAATT
130 TTATAATCTCATAATTGATTTTAAGTTAAATTT-TTTACATTTTTGGTTAAAACAGATTATAATT
* * * * * * * ** *
4288239 AAATGTTTACCTCGGGAAACATGAAGTGAAAGTCATCCATTGATAAGAAAAATCGTTTTCTAGTC
194 GAATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* *
4288304 ACTCATGCCTTCGAAA-CCTTATTACTCACTTTAAATGGTTTTATAACCTTATAATTGATTTTAA
259 ACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAA
4288368 GTTGAATTTTTTTTACAT
324 GTTGAA-TTTTTTTACAT
* * *
4288386 TTTTGGTTAAAATC-GATTATAATTAAATGTTTACCTCGAGAATCATGAGGCGAAAGCCATCCAT
1 TTTTGGTTAAAA-CAGATTATAATTGAATGTTTACCTCGGGAA-CATGAAGCGAAAGCCATCCAT
* * * *
4288450 TGATAAGCAAAGTCCATTTGTAGTCA-TCCATGCCTTCGAAAGCCTTATTAGTTGCTTTAAATGG
64 TGATAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * * * * *
4288514 TTTTATAAACTCTTAATTGCTTTTGAGTGGAATTTTTTTTACATTTTTGGTTAAAACAGATTATA
128 TTTTATAATCTCATAATTGATTTTAAGT-TAA-ATTTTTTACATTTTTGGTTAAAACAGATTATA
* * * * * *
4288579 ATTGAATGTTTACCTTGGGAAACATGAAGCAAAAGTCATCCATTGAGAAGAAAAGTCCATTTATA
191 ATTGAATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* *
4288644 GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAACCTCATAATTGATTT
256 GTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTT
*
4288709 TAAGTTCAATTTTTTTACAT
321 TAAGTTGAATTTTTTTACAT
* * * *
4288729 TTTTGGTTAAAATAGATAATAATTGAATGTTTGCCTTGGGAA-ATGAAAGCTGAAAGCCATCCAT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAACATG-AAGC-GAAAGCCATCCAT
** * ** * * * * * *
4288793 TGCCAAAAAAAGTTTATTTAAAGTCACTCAAGCCTTCAAAAGCCTTATTACTCACTATAAATTGT
64 TGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGT
* *
4288858 TTTATAATCTCATAATTGATTTTTAGTTAAATTTTCTTAC-CTTTTGGTTAAAACAGATTATAAT
129 TTTATAATCTCATAATTGATTTTAAGTTAAATTTT-TTACATTTTTGGTTAAAACAGATTATAAT
* * * *
4288922 TGAATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTAAGAAGAAAAGTTCATTTATATT
193 TGAATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * *
4288987 CAGTCATACCTTTGAGAGCCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTG
258 CACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTA
*
4289052 AGTTGCATTTTTTTTTACATT
323 AGTTG-A-ATTTTTTTACA-T
* * *
4289073 TTTTGGTTAAAACCGATTATAATTGAATGTTTATCTCGGGAAACATGAAGCGAAAGACATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGG-AACATGAAGCGAAAGCCATCCATT
* *
4289138 GATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATCACTCGCTCTAAATGGTT
65 GATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * * *
4289203 TTATAACCTTATAATTGATTTTAAGTTCAACTTTTTTACATTTTTGGTTAAAACAGATTATAAGT
130 TTATAATCTCATAATTGATTTTAAGTT-AAATTTTTTACATTTTTGGTTAAAACAGATTATAATT
* * * * * **
4289268 GAATGTTTGCCAC-AGGAAA-TGTGAGGCGAAA-CCTGTTCATTGACAAGAAAAGTTTATTTACT
194 GAATGTTTACCTCGA-GAAACT-TGAAGCGAAAGCC-ATCCATTGACAAGAAAAGTCCATTTA-T
* * * * * *
4289330 -GTCACTCATGCTTTTGAAAGCCATATTACTCGCTATAAATGGTTTTATAATTTCATAATTGATT
255 AGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATT
* *
4289394 TTAAGTTGAATTTTTTAATAT
320 TTAAGTTGAATTTTTTTACAT
* * *
4289415 TTTTGATTAAAACAGATTATAATTGAA-GTTTACCTCAGGAA-ATGTGATGCGAAAGCCATCCAT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAACA--TGAAGCGAAAGCCATCCAT
* * * *
4289478 TGACAAGAAAATTTCATTTATAGTGACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGT
64 TGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGT
* * * *
4289543 TTTATAATCTGATAATTGATTTTAAGTTGAATTTTTTTACATTCTTGTTTAAAACAGATTATAAT
129 TTTATAATCTCATAATTGATTTTAAGTT-AAATTTTTTACATTTTTGGTTAAAACAGATTATAAT
* * * * * *
4289608 TGAATGTTTACCTCAAGAAA-TGTGATGTGAAAACCATCCATTGACAAGAAAAGTCCATTTGTAC
193 TGAATGTTTACCTCGAGAAACT-TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* *
4289672 TCACTCATGCCTTCGAAAGCCTTATTAGTCACTTTAAATGGTTTTATAATCTCATAATTGCTTTT
257 TCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTT
* *
4289737 GA-TTGGATTTTTTTACAT
322 AAGTTGAATTTTTTTACAT
* *
4289755 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGGGAAACATGAAGCGAAAGTCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGG-AACATGAAGCGAAAGCCATCCATT
* * * * *
4289820 GAT-AGCAAAAGTCGATTTCTAGCCACTCACGCCTTCGAAA-CTTTATTACTCGCTTTAAATGGT
65 GATAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGT
* * *
4289883 TTTATAAACTTATAATTGATTTTAAGTTGAATTTTTTACATTTTTGGTTAAAATC-GATTATAAT
129 TTTATAATCTCATAATTGATTTTAAGTTAAATTTTTTACATTTTTGGTTAAAA-CAGATTATAAT
* * * * * * * * * *
4289947 TCAATATTTACCTTGGGAATCGTGAGGCGAAAGCCATCCATTGATAAGTAAAGTCCATTTGTAGT
193 TGAATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
4290012 CA
258 CA
4290014 TACATTGTCA
Statistics
Matches: 1394, Mismatches: 200, Indels: 70
0.84 0.12 0.04
Matches are distributed among these distances:
339 84 0.06
340 93 0.07
341 472 0.34
342 158 0.11
343 251 0.18
344 189 0.14
345 143 0.10
346 4 0.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (340 bp):
TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAACATGAAGCGAAAGCCATCCATTG
ATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTT
TATAATCTCATAATTGATTTTAAGTTAAATTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
ATGTTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC
TCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGT
TGAATTTTTTTACAT
Found at i:4289137 original size:515 final size:509
Alignment explanation
Indices: 4288045--4290014 Score: 2314
Period size: 515 Copynumber: 3.8 Consensus size: 509
4288035 TTTTTTTTGC
* * * * *
4288045 TTTTGGTTAAAACAGATT-TAATTAAATGTTTACCTCGAGAAACGTGATGCGAAAGCCATCCTTT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGACATCCATT
* * * * * * *
4288109 GACAAGAAAAGTCCATTTATAGTCGCCCATGCTTTCGAAGGCTTTATTAGTTACTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTT
* * * * ** * *
4288174 TTATAATCTCATCATTGCTTTTGAGTGGAATTTATTTT-CATTTTTGGTTATAGCAGATTATAAT
131 TTATAACCTCATAATTGATTTTAAGTTCAATTT-TTTTACATTTTTGGTTAAAACAGATTATAAT
* * * * *
4288238 TAAATGTTTACCTCGGGAAACATGAAGTGAAAGTCATCCATTGATAAGAAAAATCGTTT-TCT-A
195 TGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATTGACAA-AAAAA--GTTTATTTAA
* * *
4288301 GTCACTCATGCCTTCGAAACCTTATTACTCACTTTAAATGGTTTTATAACCTTATAATTGATTTT
257 GTCACTCATGCCTTCGAAACCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTT
* * * *
4288366 AAGTTGAATTTTTTTTACATTTTTGGTTAAAATCGATTATAATTAAATGTTTACCTCGAGAATCA
322 AAGTT-AA-ATTTTTTACATTTTTGGTTAAAATCGATTATAATTGAATGTTTACCTCGAGAAACT
* *
4288431 TGAGGCGAAAGCCATCCATTGATAAGCAAAGTCCATTTGTAGTCATCCATGCCTTCGAAAGCCTT
385 TGAGGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCAT-CATGCCTTCGAAAGCCTT
* * * * * *
4288496 ATTAGTTGCTTTAAATGGTTTTATAAACTCTTAATTGCTTTTGAGTGGAATTTTTTTTACAT
449 ATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTGAGTTG-ATTTTTTTTACAT
* * * *
4288558 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACATGAAGCAAAAGTCATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGACATCCATT
* *
4288623 GAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTT
* *
4288688 TTATAACCTCATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAATAGATAATAATT
131 TTATAACCTCATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAATT
* * *
4288753 GAATGTTTGCCTTGGG-AA-ATGAAAGCTGAAAGCCATCCATTGCCAAAAAAAGTTTATTTAAAG
196 GAATGTTTACCTCGGGAAACATG-AAGC-GAAAGCCATCCATTGACAAAAAAAGTTTATTT-AAG
* * *
4288816 TCACTCAAGCCTTCAAAAGCCTTATTACTCACTATAAATTGTTTTATAATCTCATAATTGATTTT
258 TCACTCATGCCTTCGAAA-CCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTT
* *
4288881 TAGTTAAATTTTCTTAC-CTTTTGGTTAAAA-CAGATTATAATTGAATGTTTACCTCGAGAAACT
322 AAGTTAAATTTT-TTACATTTTTGGTTAAAATC-GATTATAATTGAATGTTTACCTCGAGAAACT
* * * * * * * *
4288944 TGAAGCGAAAGCCATCCATTAAGAAGAAAAGTTCATTTATATTCAGTCATACCTTTGAGAGCCTT
385 TGAGGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCA-TCATGCCTTCGAAAGCCTT
* *
4289009 ATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTGAGTTGCATTTTTTTTTACATT
449 ATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTGAGTTG-A-TTTTTTTTACA-T
* * *
4289073 TTTTGGTTAAAACCGATTATAATTGAATGTTTATCTCGGGAAACATGAAGCGAAAGACATCCATT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGACATCCATT
* * * *
4289138 GATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATCACTCGCTCTAAATGGTT
66 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTT
* * *
4289203 TTATAACCTTATAATTGATTTTAAGTTCAACTTTTTTACATTTTTGGTTAAAACAGATTATAAGT
131 TTATAACCTCATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAATT
* * * ** * * * * *
4289268 GAATGTTTGCCACAGGAAATGTGAGGCGAAA-CCTGTTCATTGACAAGAAAAGTTTATTTACTGT
196 GAATGTTTACCTCGGGAAACATGAAGCGAAAGCC-ATCCATTGACAAAAAAAGTTTATTTA-AGT
* * * * *
4289332 CACTCATGCTTTTGAAAGCCATATTACTCGCTATAAATGGTTTTATAATTTCATAATTGATTTTA
259 CACTCATGCCTTCGAAA-CCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTA
* * *
4289397 AGTTGAATTTTTTAATATTTTTGATTAAAA-CAGATTATAATTGAA-GTTTACCTC-AGGAAA-T
323 AGTTAAATTTTTT-ACATTTTTGGTTAAAATC-GATTATAATTGAATGTTTACCTCGA-GAAACT
* * * * *
4289458 GTGATGCGAAAGCCATCCATTGACAAGAAAATTTCATTTATAGTGACTCATGCCTTCGAAAGCCT
385 -TGAGGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCA-TCATGCCTTCGAAAGCCT
* * *
4289523 TATTACTCGCTTTAAATGGTTTTATAATCTGATAATTGATTTTAAGTTGAATTTTTTTACAT
448 TATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTGAGTTGATTTTTTTTACAT
* * * ** * *
4289585 TCTTGTTTAAAACAGATTATAATTGAATGTTTACCTCAAGAAATGTGATGTGAAA-ACCATCCAT
1 TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGA-CATCCAT
* * *
4289649 TGACAAGAAAAGTCCATTTGTACTCACTCATGCCTTCGAAAGCCTTATTAGTCACTTTAAATGGT
65 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGT
* * * **
4289714 TTTATAATCTCATAATTGCTTTTGA-TTGGATTTTTTTACATTTTTGGTTAAAACAGATTATAAT
130 TTTATAACCTCATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAAT
* * * ** ** * *
4289778 TGAATGTTTACCTAGGGAAACATGAAGCGAAAGTCATCCATTGATAGCAAAAGTCGATTTCTAGC
195 TGAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATTGACAAAAAAAGTTTATTT-AAGT
* * * * * *
4289843 CACTCACGCCTTCGAAACTTTATTACTCGCTTTAAATGGTTTTATAAACTTATAATTGATTTTAA
259 CACTCATGCCTTCGAAACCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAA
* * * * * * *
4289908 GTTGAATTTTTTACATTTTTGGTTAAAATCGATTATAATTCAATATTTACCTTGGGAATCGTGAG
324 GTTAAATTTTTTACATTTTTGGTTAAAATCGATTATAATTGAATGTTTACCTCGAGAAACTTGAG
* *
4289973 GCGAAAGCCATCCATTGATAAGTAAAGTCCATTTGTAGTCAT
389 GCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCAT
4290015 ACATTGTCAC
Statistics
Matches: 1245, Mismatches: 184, Indels: 60
0.84 0.12 0.04
Matches are distributed among these distances:
509 27 0.02
510 103 0.08
511 98 0.08
512 139 0.11
513 180 0.14
514 217 0.17
515 448 0.36
516 31 0.02
517 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (509 bp):
TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGACATCCATT
GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTT
TTATAACCTCATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAATT
GAATGTTTACCTCGGGAAACATGAAGCGAAAGCCATCCATTGACAAAAAAAGTTTATTTAAGTCA
CTCATGCCTTCGAAACCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAAGT
TAAATTTTTTACATTTTTGGTTAAAATCGATTATAATTGAATGTTTACCTCGAGAAACTTGAGGC
GAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCATCATGCCTTCGAAAGCCTTATTACTC
GCTTTAAATGGTTTTATAATCTCATAATTGATTTTGAGTTGATTTTTTTTACAT
Found at i:4291086 original size:85 final size:84
Alignment explanation
Indices: 4290939--4291104 Score: 296
Period size: 85 Copynumber: 2.0 Consensus size: 84
4290929 CACGAAGCAT
4290939 CCCCCCCTTCACTAGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGAAGCAGTCCCTTC
1 CCCCCCCTTCACTAGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGAAGCAGTCCCTTC
4291004 CCTCCTCTTCCAAGCTTCC
66 CCTCCTCTTCCAAGCTTCC
* * *
4291023 CCCCTCCCTTCACTGGGCAAGAGGTGCACTTCACTCTGGATCACGAAGCAACGGAGCAGTCCCTT
1 CCCC-CCCTTCACTAGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGAAGCAGTCCCTT
4291088 CCCTCCTCTTCCAAGCT
65 CCCTCCTCTTCCAAGCT
4291105 CTTGGGCGGA
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
84 4 0.05
85 74 0.95
ACGTcount: A:0.20, C:0.40, G:0.18, T:0.21
Consensus pattern (84 bp):
CCCCCCCTTCACTAGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGAAGCAGTCCCTTC
CCTCCTCTTCCAAGCTTCC
Found at i:4291262 original size:42 final size:42
Alignment explanation
Indices: 4291204--4291407 Score: 327
Period size: 42 Copynumber: 4.9 Consensus size: 42
4291194 ACGGAGGCAA
* * * *
4291204 CAACGACTTATGTGCACTCCCACTCACACATAGCTGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
*
4291246 CAACGGCTTATGTGCACTCCTACTCGCATATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
*
4291288 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGATCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* * *
4291330 CAACGACTTATGTGCACTCCTACTCGCACATAGTCGGGTCAT
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
4291372 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCG
4291408 AGTTCAAATC
Statistics
Matches: 149, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 149 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:4294109 original size:172 final size:171
Alignment explanation
Indices: 4292420--4295483 Score: 3081
Period size: 171 Copynumber: 17.9 Consensus size: 171
4292410 NNNNNNNNNT
* * * * * * ** * * *
4292420 AGTGACTATAAATGAACTTTTCCTATCAATTGTTGCCTTTCACTTCATGTTTCCCAAGGAAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
* *** *
4292485 CTCAATTATAATCTGTTTTAATTTAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTA
66 TTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* *
4292550 TAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATG
131 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * *
4292591 AGTGACTATAAATGCACTTTTCTTGTTAATGGATGGCTTTCGCTTCACATTTCCCAAGGTAAACT
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
* * * ** * * ** * *
4292656 TTGAATTGTAATATGTTTTTGCCGAAAATGCAAAAAAA-AAAAGCTTAAAATCAATTATGTGACT
66 TTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA-CTTAAAATCAATTATGAGATT
*
4292720 ATAAAACCATTTAAAACGAGTAATAAGG-TTGTCGAAGGCATG
130 ATAAAACCATTTAAAGCGAGTAATAAGGCTT-TCGAAGGCATG
* * * *
4292762 AGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTGCTACACGTTT-TCTAAGGTAAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAAAC
* * * * * * * *
4292826 ATTCAATTACAATCTCTTTTAACCAAAAATGAAAAAAAAAATCAACTTGAAATGAATTATAAGGT
65 ATTCAATTATAATCTGTTTTAACCAAAAATG-TAAAAAAATTCAACTTAAAATCAATTATGAGAT
* ** * *** *
4292891 TATAATACCATTTAAAGTAAGTAATAAAGCTTT--ATTACTTG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * **
4292932 AGTGACTATAAATGGACTTTTTTTGTCAATCGATAGCTTTCT-CTTCATGCTTCCCAAGATAAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT-TGCTTCACGTTTCTCAAGGCAAAC
* * * ** * *
4292996 ATTTAATTATAATCT-TTCTTAACCAAATATTTAACCAAATTCAACTTAAAATCAAATACGAGAT
65 ATTCAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * * * **
4293060 TATAAAACCATTTAGAGCAAGTAACAAGTCTTTCAAAGATATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * *
4293103 ATTGACTATAAATGGATTTTTCCTT-TCAATGGATGGCTTTTGCTTCACCTTTC-CTGAGGCAAA
1 AGTGACTATAAATGGACTTTT-CTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAAA
** * * * * *
4293166 CAACCAACTATAATCTGTTTTAACCAAAAATGCAAAAAAGTTCAGCCTAAAATCAATTATGAGAT
64 CATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * *
4293231 TATAAAACCATTTAAAACGAGTAATATGGCTTTTGAAGGCATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
** * *** * * *
4293274 AGTGAGAATAAATGGACTTTTCTTGTTAATGGATGGCTTTCATTTCACATTT-TCCTAGGTAAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCT-CAAGGCAAAC
* * ** * *
4293338 ATTCAATTATCATCTATTTTAAGGAAAAAGGTAAAAGAATTCAACTTAAAATCAATTATGAGATT
65 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * **
4293403 ATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAGGCAAA
130 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * *
4293445 AGTGACTATAAATGGACTTTTCTT-TCCAATTGATGGCTTTTGCTTCATGTTTC-CTAAGGTAAA
1 AGTGACTATAAATGGACTTTTCTTGT-CAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAAA
* * * * *
4293508 TATCCAATTATAATCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAGTCAATAATGAGAT
64 CATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* *
4293572 TATAAAACCATTTAAAGCGAGTAATATGGCTTTCAAAGGCATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * *
4293615 TGCGACTATAGAA-GGGCTTTTCCTGTCAATGGATGGCTTTTGCTTCACATTTCTCGAGGCAAAC
1 AGTGACTATA-AATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAAC
* ** *
4293679 ATTTAATTATAATCT-TTCTTAACTGAAAATGT-AAAAAATTCAAGTTAAAATCAATTATGAGAT
65 ATTCAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * *
4293742 TATAAAACCATTTAAAGTGAGTAATAAGGCTTCCAAAGGTATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * *
4293785 AGTGATTATAAATGGACTTTT-TTGGTTAATCGTTGGCCTTTGCTTCACGTTTTTCGAGGCAAAC
1 AGTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAAC
* * *
4293849 ATTCAATTATAATCTGTTTTAA-TAAAAAGGTAAAACAATTCAACTTAAAATCAATTATGAGATT
65 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * *
4293913 ATAAAACCATTTAAAGCAAGTAATAAGCCTTTCGAAGGAATG
130 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * *
4293955 ACTGACTATAAATGGGCTTTTCTTCTCAAT-GATTGGCTTTTGCATCACGTTTCTCAAGGCAAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTTGCTTCACGTTTCTCAAGGCAAAC
* * * *
4294019 ATTCAATTATATTCTGTTTTAACCAAAAGTGTAAAATCAATTCAACTTAAAATAAATTATGAGAT
65 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAA-AAATTCAACTTAAAATCAATTATGAGAT
* * * *
4294084 TATAAAATCATTTAAAGCAAGTAATAAGTCTTTCGAAGGAATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * ** * *
4294127 AGTGACTATAAATTGACTTTTCTTCTCAATGGATGGCTTTCACATCACGTTTCCCAAGGCAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
* * * * *
4294192 GTT-AATTATAATTTGTTTTTAACCAAAAATATAAAAAAATTCTACTTTAAATAAATTATGAGAT
66 -TTCAATTATAATCTG-TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * *
4294256 TATAAAACCATTTAAAGTGACTAATAAGGCTCTCGAAGGCATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * * *
4294299 AGTGACTATAAATAGATTTTTCTTATCAATCGATGGCATTCGCTTCACATTTCGT-GAGGCAAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-TCAAGGCAAAC
* * * * *
4294363 ATTCAATTACAATCTATTTTAACC-AAAATGGTAAAAAAATTCAACTTACAATCAACTATGAGGT
65 ATTCAATTATAATCTGTTTTAACCAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * *
4294427 TATAAAACCATTTGAAGTGAGTAATAAGGCTTTTGAAGGCATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * * *
4294470 ACTAACTATAAATGGACTTTTTTTGTCAATGCATGGCTTTTGCTTCATGTTTCCCGAGGAAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
** *
4294535 TTCAATTATTCTCTGTCTTAACCAAAAATGTAAAAAACAATTCAACTTAAAATCAATTATGAGAT
66 TTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAA-AATTCAACTTAAAATCAATTATGAGAT
* * * *
4294600 TATAAAACAATTTAAAGTGAGTAATAAGGCTTCCAAAGGCATG
129 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * **
4294643 AGTGACTATAAGTGAACTTTTCTTCTCAATGGATAGCTTTTTG-TTCACGTTTTTTGAGG-AAAG
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTTGCTTCACGTTTCTCAAGGCAAA-
* * * ** * *
4294706 TATTCAATTATAATTTGTTTAAACCAAAAATGTAAAAAATATTTGACCTAAAATCAACTATGAGA
64 CATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAA-ATTCAACTTAAAATCAATTATGAGA
** * *
4294771 TTATAAAACCATTTAAAATGAGTAATAAGGCTTTGGAAGGTATG
128 TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* ** * * *
4294815 AGTGACTATAAATAGACTTTTCTTGTCAATATATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
* *
4294880 TTCAATTATAA-CATGTTTTTAACCAAAAATATAAAAAAATTCAA-TTCAAAATAAATTATGAGA
66 TTCAATTATAATC-TG-TTTTAACCAAAAATGTAAAAAAATTCAACTT-AAAATCAATTATGAGA
*** *
4294943 TTATAAAACCATTTAAAAATAGTAATAAGGCTTTCGAAGGTATG
128 TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * * * *
4294987 AGTGATTGTAAATGAACTTTTCTTATCAACGGATGACTTTTGCTTCATGTTTCCCAAGGCAAGCA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
* * * * * **
4295052 TTCAATTATAATCTATTTTAATCAAAAAGGTAAAAAAATTCAACTCAAAATTAACAATGAGATTA
66 TTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * *
4295117 TAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGGCATG
131 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * * * * *
4295158 AGAGACTACAAATGAATTTTTCTTCTCAATAGATGGCTTTCGCTTCACGTTTC-CTGAGGTAAAT
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAAAC
* * *
4295222 ATTTAATTATAATTTGTTTTAACCAAAAAGGT-AAAAAATTCAACTTAAAATCAATTATGAGATT
65 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * **
4295286 ATAAAACCATTTAAAGCAAGTAACAAGGCTTTTTAAGGCATG
130 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * ***
4295328 AGTGACTGTGAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCTTGTGGCAAGA-
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAA-AC
* * * *
4295392 ATTCAATTATAATCTGTTTAAACAAAAAATGTAAAAAGATTCAACTTAAAATCAATTATGAGACT
65 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* *
4295457 ATAAAACTATTTAAAGCAAGTAATAAG
130 ATAAAACCATTTAAAGCGAGTAATAAG
4295484 NGATTATAAA
Statistics
Matches: 2387, Mismatches: 449, Indels: 114
0.81 0.15 0.04
Matches are distributed among these distances:
169 65 0.03
170 645 0.27
171 926 0.39
172 566 0.24
173 180 0.08
174 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACA
TTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
Found at i:4295864 original size:171 final size:172
Alignment explanation
Indices: 4295485--4295898 Score: 586
Period size: 172 Copynumber: 2.4 Consensus size: 172
4295475 AGTAATAAGN
*
4295485 GATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTGAAAGGCATGAGTGACTATAAATAGACT
1 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTG-AAGGCATGAGTGACTATAAATAAACT
* * *
4295549 TTTCTTGTCAAAACATGGCTTTCGCTTCACATTTCTCGAGGTAAACATTCAATTATAATATGTTT
65 TTTCTTCTCAAAACATGGCTTTCGCTTCACATGTCTCGAGGCAAACATTCAATTATAATATGTTT
* *
4295614 TTAACCAAAAATGTAAAACAATTCAATTCAAAATAAATTATGA
130 TGAACAAAAAATGTAAAACAATTCAATTCAAAATAAATTATGA
*
4295657 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTGTAAATAAACTT
1 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATAAACTT
*** ** * *
4295722 TTCTTCTCAATGGATGGCTTTCGCTTCATGTGTCTCGTGGCAAGA-ATTCAATTATAATCTG-TT
66 TTCTTCTCAAAACATGGCTTTCGCTTCACATGTCTCGAGGCAA-ACATTCAATTATAATATGTTT
*
4295785 TGAACAAAAAATGTAAAA-AGATTCAACTT-AAAATCAATTATGA
130 TGAACAAAAAATGTAAAACA-ATTCAA-TTCAAAATAAATTATGA
* * * *
4295828 GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGAACTC
1 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATAAACTT
4295893 TTCTTC
66 TTCTTC
4295899 ACATTTCCAA
Statistics
Matches: 218, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
170 1 0.00
171 103 0.47
172 109 0.50
173 5 0.02
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (172 bp):
GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATAAACTT
TTCTTCTCAAAACATGGCTTTCGCTTCACATGTCTCGAGGCAAACATTCAATTATAATATGTTTT
GAACAAAAAATGTAAAACAATTCAATTCAAAATAAATTATGA
Found at i:4296488 original size:293 final size:291
Alignment explanation
Indices: 4295963--4296547 Score: 766
Period size: 293 Copynumber: 2.0 Consensus size: 291
4295953 CAACTCAACC
* *
4295963 TGAGATTATAAAATCATTTAAAGCAAATAATAAGGCTTTCAAGGGCATGACTGATATAAATGAAC
1 TGAGATTATAAAATCATTTAAAGCAAATAATAAGGCATTCAAGGGCATGACTGATATAAATAAAC
* * * * *
4296028 GTTTCTTCTCAATGGATGGCTTTCGCATCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTT
66 GTTTATTCTCAATGCATGGCTTTCGCATCACATTTCCCGAGGTAAACATTCAATTATAACCCGTT
*
4296093 TTAAACAAAAATGTAAAAAATTCAACTTAAAATAAACTATAAAATTATAAAACCATTTAAAGTGA
131 TTAAACAAAAATGTAAAAAATTCAACTTAAAATAAACTAGAAAATTATAAAACCATTTAAAGTGA
*
4296158 GTAATAAGCTTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTTG
196 GTAATAAGCTTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTCTCAATAGATGGCTTTTG
* *
4296223 CTTCATGCTTCTCGAGGTAAATAGTCAATTA
261 CTTCATGCTTCCCGAGATAAATAGTCAATTA
* * * * *
4296254 TGAGATTATAAAATCATTTAAATCGAGTAATAAGGCATTCGAA-GGTATGAGTGACTAT-AATAA
1 TGAGATTATAAAATCATTTAAAGCAAATAATAAGGCATTC-AAGGGCATGACTGA-TATAAATAA
* * * * ** *
4296317 ACTTTTATTGTCAATGCATGGCTTTTGCTTCACATTTCTTGGGGTAAACATTCAATTATAACCCG
64 ACGTTTATTCTCAATGCATGGCTTTCGCATCACATTTCCCGAGGTAAACATTCAATTATAACCCG
* * * *
4296382 TTTTTAACGAAAAATGTAAAAAACATT-AACTTAAAATAAATTAGGAGATTATAAAACCATTTAA
129 TTTTAAAC-AAAAATGT-AAAAA-ATTCAACTTAAAATAAACTAGAAAATTATAAAACCATTTAA
* * *
4296446 AGTGAG-AACTAAGGC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATG
191 AGTGAGTAA-TAA-GCTTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTCTCAATAGATG
* * * *
4296509 GCTTTTGCTTTATGTTTCCCGAGATGAATATTCAATTA
254 GCTTTTGCTTCATGCTTCCCGAGATAAATAGTCAATTA
4296547 T
1 T
4296548 AATATGTTTT
Statistics
Matches: 253, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
291 109 0.43
292 15 0.06
293 124 0.49
294 5 0.02
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (291 bp):
TGAGATTATAAAATCATTTAAAGCAAATAATAAGGCATTCAAGGGCATGACTGATATAAATAAAC
GTTTATTCTCAATGCATGGCTTTCGCATCACATTTCCCGAGGTAAACATTCAATTATAACCCGTT
TTAAACAAAAATGTAAAAAATTCAACTTAAAATAAACTAGAAAATTATAAAACCATTTAAAGTGA
GTAATAAGCTTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTCTCAATAGATGGCTTTTG
CTTCATGCTTCCCGAGATAAATAGTCAATTA
Found at i:4296575 original size:171 final size:170
Alignment explanation
Indices: 4296247--4299360 Score: 3080
Period size: 171 Copynumber: 18.2 Consensus size: 170
4296237 AGGTAAATAG
* * * *
4296247 TCAATTATGAGATTATAAAATCATTTAAA-TCGAGTAATAAGGCATTCGAAGGTATGAGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGT-GAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
** * * * * ** *
4296311 T-AATAAACTTTTATTGTCAATGCATGGCTTTTGCTTCACATTTCTTGGGGTAAACATTCAATTA
65 TAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTA
* * *
4296375 TAACCCGTTTTTAACGAAAAATGTAAAAAACATT-AACTTAAAA
130 TAATCTG-TTTTAAC-CAAAATGTAAAAAA-ATTCAACTTAAAA
* * *
4296418 TAAATTAGGAGATTATAAAACCATTTAAAGTGAG-AACTAAGGCTTTCGAAGGCATGAGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAA-TAAGGCTTTCAAAGGCATGAGTGACTA
* * * * * * *
4296482 TAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTTATGTTTCCCGAGATGAATATTCAATTA
65 TAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTA
* * *
4296547 TAATATGTTTTAGCCAAAATGTTAAAAAAATTCAAGTTAAAA
130 TAATCTGTTTTAACCAAAATG-TAAAAAAATTCAACTTAAAA
* * * ** *
4296589 TCAATTGTGAGATTAT-AAACCATTTAGAGCGAGTAATAAGGCTTTCAAAGATATGAGTGACGAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * *
4296653 AAATAGACTTTT-TTCATCCATGGAT-GCTTTTGCTTCACATTTCCCAAGGCAAACATTTAATTA
66 AAATGGACTTTTCTT-ATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTA
* * *
4296716 TAATCT-TTCTTAATCCAAAATGTAAATAAATGCATCTTAAAA
130 TAATCTGTT-TTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
* * * * *
4296758 TCAATTATTAGATTATAAAGCCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTAC
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * ** * * * * *
4296823 AAATGGAGTTTTCTTACCAACAGATGTG-TTTTACCTCACGTTTCTCGTGGCAAACA-TCTAATT
66 AAATGGACTTTTCTTATCAATGGATG-GCTTTTGCTTCACGTTTCCCGAGGTAAACATTC-AATT
* * * *
4296886 ATAATATGTTTTAACCAAAAAGGTAAAACAATTCAACTTATAA
129 ATAATCTGTTTTAACC-AAAATGTAAAAAAATTCAACTTAAAA
* * * * * * *
4296929 TCAACTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGGTTTTTAAAGGCATGAGTGATTAG
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * ***
4296994 AAATGGACTTTTCTTCTCAGTGCATGGCTTTTGTTTCACGTTTTTGGAGGTAAACATTCAATTAT
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
* * *
4297059 AA-CGTGTTTTTAACCAAAAATGCAAAAAAGTTTAACTTAAAA
131 AATC-TG-TTTTAACC-AAAATGTAAAAAAATTCAACTTAAAA
* * ** *
4297101 TAAATTATGAGATTATTAAACCATTTAAAGCAAGTAATAAGGCTTAT-GAAGGCATGAGTGAC-A
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT-TCAAAGGCATGAGTGACTA
* * * * * * * *
4297164 GTAAATAGAC-ATTCTTGGT-AATGGATGGCTTTTGCTTCACGTTTCCTGAAGCAAATATCCAAT
65 -TAAATGGACTTTTCTT-ATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAAT
* * * *
4297227 TATAACCTCTTTTAACTAAAAAGGTAAAAAAATTCAACTTAAAA
128 TATAATCTGTTTTAAC-CAAAATGTAAAAAAATTCAACTTAAAA
* * *
4297271 TCAATTATGAGATTATAAAACCATTTAAATTAAGTAATAAGGCTTTCAAAAGCATGAGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* ** * ** * *
4297336 AAATGGACTTTTCCTATCAATGGATGGCTTTCACTTTACGTTT-CTTATGGCAAACATTTAATTA
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGA-GGTAAACATTCAATTA
* *
4297400 TAATCT-TTCTTAAGCAAAAATATAAAAAAATTCAACTTAAAA
130 TAATCTGTT-TTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
* * *
4297442 TCAATTATGAGATTATAAAACCTTTTAAAGTGAGTAATAAGGCTTCCAAAGGCATGAGTTACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * ** * *
4297507 AAATAGG-CTTTTCTCATCAATGGATTGCTTTCCCTTCACGTTTCTCGAGGTAAACATGCAATTA
66 AAAT-GGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTA
*
4297571 TAATATGTTTTAACCCAAAATGTAAAAAAATTCAACTTAAAA
130 TAATCTGTTTTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
* * * * * *
4297613 TAAATTATAAGATTGTAAAGCCATTTAAAGCGAGTAATAAGGCTTTCAAAGGTATGAGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * * *
4297678 AAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCCAAAGAAAATATTCAATTAT
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
* * * ** * *
4297743 AACCTATTTTAATCGAAAATGTAAAATTATTTAACCTAAAA
131 AATCTGTTTTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
** * *
4297784 TCAATTATGAGATTATAAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATAAGTGACAA
1 TCAATTATGAGATTAT-AAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* ** * * * * *
4297849 TAAATAGACTTTTCTTGGCAATGGATGGCTTTTGCTTCACATTTCCCGAAGCAAATATCCAATTA
65 TAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTA
* * *
4297914 TAACCTGTTTTAATCGAAAAGGTAAAAAAATTCAACTTAAAA
130 TAATCTGTTTTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
*
4297956 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGCATGAGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * ** *** * * * *
4298021 AAATGGACTTTTCCTGTC--TGCATGGCTTTCACTTTGTGTTTCTCAAGG-CAACATTCAGTTAT
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
*
4298083 AATCT-TTCTTAACCAAAAATGTAAAAAAATTTAACTTAAAA
131 AATCTGTT-TTAACC-AAAATGTAAAAAAATTCAACTTAAAA
*** ** * *
4298124 TCAATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTGAAGGCATTAGTGACTAC
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * * *
4298189 AAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTTCCTGAGGTGAACATTTAATTAT
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
* **
4298254 AATCTTTTTTAACCCAAAATGTAAAAAAATTCATGTTAAAA
131 AATCTGTTTTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
* * * * * *
4298295 TCAATTATTCA-ATTATAAAAACATTTAAAGTGAGTAATAAGGCTTCCGAAGGTAGGAGTGACTA
1 TCAATTA-TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * ** * * * *
4298359 TAAATGGACTTTTCTTACCAACGGATGTTTTTTACCTCACGTTTCTCAAGGTAAACATTCAATTA
65 TAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTA
* * * *
4298424 TAATTTGTTTTAACCAAAAAGGTAAAGAAATTCAACTTATAA
130 TAATCTGTTTTAACC-AAAATGTAAAAAAATTCAACTTAAAA
* * *
4298466 TCAACTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGCCATGAGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * * * *
4298531 AAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCTGAAGCAAATATCCAATTGT
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
* * * *
4298596 AACCTGTTTTAACCAAAAAGGTAAAATATTTCAACTTAAAA
131 AATCTGTTTTAACC-AAAATGTAAAAAAATTCAACTTAAAA
4298637 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * ** * * *
4298702 AAATGGACTTTTCCTATCAATGGATGGCTTTCGCTTTGCGTTT-CCTATGGCAAACATTTAATTA
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGA-GGTAAACATTCAATTA
* *
4298766 TAATCT-TTCTTAACCAAAAATGTAAAAAAATTGAACTAAAAA
130 TAATCTGTT-TTAACC-AAAATGTAAAAAAATTCAACTTAAAA
* * * * *
4298808 TCAATTATAAGATTATAAAACCTTTTAAAGTGAGTAATATA-GCTTCCAAAGGAATGAGTTACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATA-AGGCTTTCAAAGGCATGAGTGACTA
* * * *
4298872 TAAATAGG-CTTTTCTCATCAATGGATTGCTTCT-CTTTCACGTTTCCCTAGGTAAACATTCAAT
65 TAAAT-GGACTTTTCTTATCAATGGATGGCTTTTGC-TTCACGTTTCCCGAGGTAAACATTCAAT
* * *
4298935 TATAATATTTTTTAACCAAAAATGTAAAAAAATTCAACTCAAAA
128 TATAATCTGTTTTAACC-AAAATGTAAAAAAATTCAACTTAAAA
* * * * ** * *
4298979 TAAATTATAAGATTGTAAAGCCATTTAAAAAGAGTAATAAAGCTTTCAAAGGTATGAGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
** * * * * * * * * ** *
4299044 AAATTAACTTTTGTTCTCAATGGATAGCTTTTGCTCCATGTTTTCCGAAGTAAATATTTGATTAA
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
* * * * *
4299109 AACCTGTTTTAATCGAAAAGGTAAAAAAATTTAACCTAAAA
131 AATCTGTTTTAA-CCAAAATGTAAAAAAATTCAACTTAAAA
* ** * * *
4299150 TCAATTATGAGATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATAAGTGACAAT
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* ** * ** * * * * *
4299215 AAATAGACTTTTCTTGGCAATGGATGGCTTTTGCTTTACGTTTCTTGAAGCAAATATCCAATTCT
66 AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
* * * *
4299280 AACCTGTTTTAACCGAAAAGGCAAAAAAATTCAACTTTAAA
131 AATCTGTTTTAACC-AAAATGTAAAAAAATTCAACTTAAAA
4299321 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
1 TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
4299361 TGTCAAGCTC
Statistics
Matches: 2429, Mismatches: 455, Indels: 118
0.81 0.15 0.04
Matches are distributed among these distances:
167 3 0.00
168 118 0.05
169 90 0.04
170 269 0.11
171 1625 0.67
172 323 0.13
173 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
AAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCGAGGTAAACATTCAATTAT
AATCTGTTTTAACCAAAATGTAAAAAAATTCAACTTAAAA
Found at i:4302873 original size:13 final size:13
Alignment explanation
Indices: 4302855--4302879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4302845 GGAGAAATTG
4302855 TGATTTTATAAAA
1 TGATTTTATAAAA
4302868 TGATTTTATAAA
1 TGATTTTATAAA
4302880 TTTTTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:4305423 original size:171 final size:170
Alignment explanation
Indices: 4305110--4306317 Score: 1289
Period size: 171 Copynumber: 7.1 Consensus size: 170
4305100 GGTCGTGACA
* * * *
4305110 AATAAGGCTTTCGAAGGCATAAGTGACTATAAAT-AGACTTTTCTTGTCAATGGATGGCTTTCAC
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTCTCAATGGATGGCTTTCGC
** * *
4305174 TTTGCGTTTCTTGAGGC-AACATTTAATTATAATCT-TTCTTAACCAAAAATGTAAAAAAATTCA
65 TTCACGTTTC-TCAGGCAAATATTTAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCA
*
4305237 ACTTAAAATCAATTATGAGATTACT-AAACCATTTAAAACAAGT
128 ACTTAAAATCAATTATGAGATTA-TAAAACCATTTAAAGCAAGT
* * * *
4305280 AATAAGGCTTTCGAAGGCATTAGTGACTACAAATGAACTTTTCTTCTCAATCGATGGCTTTCGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * *
4305345 TCACATTTCTCATGGTAAACATTTAGTTATTATCTGTTTTAACC-AAAATGGTAAAAAAATTCAA
66 TCACGTTTCTCA-GGCAAATATTTAATTATAATCTGTTTTAACCAAAAAT-GTAAAAAAATTCAA
**
4305409 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * **
4305451 AATAAGGCTTTTCAAAGGAATGAGTGACTATAAATGAACTTTTCTTGTCAATAAATGGCTTTCGC
1 AATAAGGC-TTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGC
* * * *
4305516 TTCACTTTTCTTGAGGCAAACATTTAATTATAATCT-TTCTTCACCAAAAATGTAAAAAAATTCA
65 TTCACGTTTC-TCAGGCAAATATTTAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCA
* **
4305580 ACTTAAAATCAATTATGAGATTATAAAACCGTTTAAAGTGAGT
128 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
* ** * ** * * ** *
4305623 AATAAGGCTTCCAAAGATATCAGTGACTATAAATGGGCTTTTC-TCATCACTTGATAACTTTCCC
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTC-TCAATGGATGGCTTTCGC
* * * * *
4305687 TTCACGTTTCTCGAGGTAAATATTCAATTATAGTATGTTTTAACCAAAAATATAAAAAAATTCAA
65 TTCACGTTTCTC-AGGCAAATATTTAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * * *
4305752 TTTAAAATAAATTATGAGATTGTAAAGCCATTTAAAGCAAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
* *
4305794 AATAAGGCTTTCAAAGGTATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCCTTCGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * * *** * *
4305859 TCATGTTTCCTGAAGCAAATATTCAATTATAACCTGTTCTAATTGAAAAGGCAAAAAAATTCAAC
66 TCACGTTT-CTCAGGCAAATATTTAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
** * *
4305924 TTAAAATTGATTATGAGATTATAAAATCGTTTAAAGCAAGT
130 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * * * *
4305965 GATAAGGCTTCCAAAGGCATGAGAGACTATAAATGTATTTTTCTTCTCAATGGATGGCTTTCGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * ** * **
4306030 TCACGTTTCCCAAAGCAAATATTCAATTACAATCTACTTTAACCAAAAATGCAAAAGCATTCAAC
66 TCACGTTTCTC-AGGCAAATATTTAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
* * * *
4306095 TTAAAATCAATTATGAGACTATAAAAGCATTTAGAGCGAGT
130 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * * * *
4306136 AATAAGGCTTCCGAAGGCATGAGTGACTATAAATAAAC-TTTCTTTCTCAATGCATGGCTTTCAC
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTC-TTCTCAATGGATGGCTTTCGC
* * * * * * * ***
4306200 TTCATGTTTCTCGAGGAAAATATTTAATTATAATTTATTTTAAGCAAAAAGGTAAAAAATTTTGG
65 TTCACGTTTCTC-AGGCAAATATTTAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * *
4306265 CTTAAAATCAATTATGAGATTATAAAATCATTGAAAGTAAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
4306307 AATAAGGCTTT
1 AATAAGGCTTT
4306318 TGAAAGCATT
Statistics
Matches: 870, Mismatches: 151, Indels: 33
0.83 0.14 0.03
Matches are distributed among these distances:
169 2 0.00
170 79 0.09
171 629 0.72
172 153 0.18
173 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34
Consensus pattern (170 bp):
AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
TCACGTTTCTCAGGCAAATATTTAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACT
TAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT
Found at i:4306272 original size:513 final size:508
Alignment explanation
Indices: 4305110--4308609 Score: 3533
Period size: 513 Copynumber: 6.9 Consensus size: 508
4305100 GGTCGTGACA
4305110 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACT
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTT-TTGTCAAT-GATGGCTTTCACT
** * * * *
4305175 TTGCGTTTCTTGAGG-CAACATTTAATTATAATCT-TTCTTAACCAAAAATGTAAAAAAATTCAA
64 TCACGTTTCTCGAGGTAAACATTCAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTTAA
* *
4305238 CTTAAAATCAATTATGAGATTACTAAACCATTTAAAACAAGTAATAAGGCTTTCGAAGGCATTAG
128 CTTAAAATCAATTATGAGATTA-TAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAG
* * * *
4305303 TGACTACAAATGAACTTTTCTTCTCAATCGATGGCTTTCGCTTCACATTTCTCATG--GTAAACA
192 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTC-C-TGAAGTAAATA
* * * *
4305366 TTTAGTTATTATCTGTTTTAACCAAAATGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
255 TTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * * *
4305431 TAAAACCATTTAAAGTGAGTAATAAGGCTTTTCAAAGGAATGAGTGACTATAAATGAACTTTTCT
320 TAAAACCATTTAAAGCGAGTAATAAGGC-TTCCGAAGGCATGAGTGACTATAAATGAACTTTTCT
** * ** * * *
4305496 TGTCAATAAATGGCTTTCGCTTCACTTTTCTTGAGGCAAACATTTAATTATAATCTTTCTTCACC
384 TGTCAATGGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCTTT-TTAACC
* * *
4305561 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCGTTTAAAGTGAGT
448 AAAAATG-GAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * ** * * * ** * ** *
4305623 AATAAGGCTTCCAAAGATATCAGTGACTATAAATGGGCTTTTCTCATCACTTGATAACTTTCCCT
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTT-TTGTCA-ATGATGGCTTTCACT
* * * * * *
4305688 TCACGTTTCTCGAGGTAAATATTCAATTATAGTATGTTTTAACCAAAAATATAAAAAAATTCAAT
64 TCACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTTAAC
* * * *
4305753 TTAAAATAAATTATGAGATTGTAAAGCCATTTAAAGCAAGTAATAAGGCTTTCAAAGGTATGAGT
129 TTAAAATCAATTATGAGATTATAAA-CCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGT
* * *
4305818 GACTATAAATGAACTTTTCTTCTCAATGGATGGCCTTCGCTTCATGTTTCCTGAAGCAAATATTC
193 GACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGTAAATATTC
* * *** * **
4305883 AATTATAACCTGTTCTAATTGAAAAGGCAAAAAAATTCAACTTAAAATTGATTATGAGATTATAA
258 AATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * * *
4305948 AATCGTTTAAAGCAAGTGATAAGGCTTCCAAAGGCATGAGAGACTATAAATGTATTTTTCTTCTC
323 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTC
* * * * * *
4306013 AATGGATGGCTTTCGCTTCACGTTTCCCAAAGCAAATATTCAATTACAATCTACTTTAACCAAAA
388 AATGGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCT-TTTTAACCAAAA
* * * * *
4306078 ATGCAAAAGCATTCAACTTAAAATCAATTATGAGACTATAAAAGCATTTAGAGCGAGT
452 ATGGAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
4306136 AATAAGGCTTCCGAAGGCATGAGTGACTATAAATAAACTTTCTTTCTCAATGCATGGCTTTCACT
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTT-TTTGTCAATG-ATGGCTTTCACT
* * * * * * * * * **
4306201 TCATGTTTCTCGAGGAAAATATTTAATTATAATTTATTTTAAGCAAAAAGGTAAAAAATTTTGGC
64 TCACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTTAAC
* * * * *
4306266 TTAAAATCAATTATGAGATTATAAAATCATTGAAAGTAAGTAATAAGGCTTTTGAAAGCAT---T
129 TTAAAATCAATTATGAGATTAT-AAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGT
* * * *
4306328 G------GATGGA------TT-TC----G-T---TTT-G-----CGTTTCCTGAGGTAAACATTC
193 GACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGTAAATATTC
* * * ** *
4306366 AGTTATAATCTATTTCAACCAAAAATATAAAACAATTCAACTTAAAATCAATTATGAGATTATAA
258 AATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * ** * * *
4306431 AACCATTTAAAGCAAGTAGTAATGCTTCTAAAGGCATGAGTGACTATAAAAGGACTTTTCTTGTT
323 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTC
* * * * *
4306496 AATGGATGGCTTTTGCCTCACGTTTCCTGAGGTAAACATTCGATTATAATCTATTTCAACCAAAA
388 AATGGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCT-TTTTAACC-AAA
** * * * *
4306561 ATATATAAAAAATTCCACTTAAAATCAATTATGAGATTATAAAACAATATAAAGTGAGT
451 A-ATGGAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * **
4306620 AATAAGACTGTCAAAGGCATGAGTGACTACAAATGGACTTTTCTT-TCCAATTGATGGCTTTTGC
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTT-TTGT-CAA-TGATGGCTTTCAC
* * * *
4306684 TTCACATTTCCCAAGATAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAATTTCA
63 TTCACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTT-A
* * * * *
4306748 ACTTAAAATCAATTAAGAGATTATAGAACCATTAAAAGCGAGTAATAAGGCTTCCAAAGGCATGA
127 ACTTAAAATCAATTATGAGATTATA-AACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGA
* * * * * * * *
4306813 GTGACTATAAATGGACTTTTCTTGTCAATGGACGACTTTCACTTCGCGTTT-CTCAAGATAAACA
191 GTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCTGAAG-TAAATA
* * * *
4306877 TTCGATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
255 TTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * *
4306942 TAAAACTC-TTTAAAGCGAGTAATAAGGCTTACGAAGCCATGAGTTACTATAAATGAACTTTTCT
320 TAAAAC-CATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * * * * * * *
4307006 TCTCAATGCATGGGTTTCACATCACATTT-TCGAAGGTAAATATTCAATTATAATCTCTTCTAAC
384 TGTCAATGGATGGCTTTCGCTTCACGTTTCCCG-AGGTAAACATTCAATTATAATCT-TTTTAAC
* * * * * *
4307070 TGAAAACAT--AAACAAATTTAACTTAAAATTAATTATAAGGTTATAAAGCCATTTAAAGCGAGT
447 -CAAAA-ATGGAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
4307133 AATAAGGCTTTCGAAGGCATAAGTGACAATAAATAGACTTTGTTTGGCAATGGATGGCTTTCGCT
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTT-TTTGTCAAT-GATGGCTTTCACT
*
4307198 TCACGTTTC-CGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTAAC
64 TCACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTTAAC
* * * * *
4307262 TTTAAATCAATTATGAGATTATAAA-AATTTAAAGCGAGTAATAAGGCTTTTGAAGGGATGAGTG
129 TTAAAATCAATTATGAGATTATAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTG
** * * * * *
4307326 GTTATAAATGAAGTTTTCTTCTTAACGAATGGCTTTCGCTTCACGTTT-CTCGAGGTAAATATTC
194 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAAGTAAATATTC
* * * * *
4307390 AA-AATGATCTGTTTTAATCAAAAAGGTAAAAAAATTCAACCTAAAATCAATTATGAAATTATAA
258 AATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
4307454 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTTTTCTC
323 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTC
* * * * * * * *
4307519 AATGGGTGGCTTTCGCATCATGTTTCTCGAGATAAATATTCAATTAGAATCTGTTTTAACTAAAA
388 AATGGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCT-TTTTAACCAAAA
* *
4307584 ATGTGAAAAAATTC-ACATAAAATCAATTAGGAGATTATAAAACCATTTAAAGCGAGT
452 ATG-GAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * * *
4307641 AATAAGCCTTTTGAAGGAATCAGTGACTACAAATCGACTTTTCTTGTCAATGGATGACTTTCGCA
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTT-TTGTCAAT-GATGGCTTTCACT
* * * *
4307706 TCATGTTTCTCGAGGTAAACATTTAATTATAATCTGTTTTAACTAAAAATGTAAAAACAATTGAA
64 TCACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA-AATTTAA
*
4307771 GC-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCAACTAATAAGGCTTTCGAAGGCATGA
128 -CTTAAAATCAATTATGAGATTAT-AAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGA
* * * * *
4307835 GTGACTATAAATGAACTTTTCTTCTCAATGCATGGCTTTTGCTTCACGTTT-TTCAAAGCAAATA
191 GTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAAGTAAATA
* *** * *** *
4307899 TTCAATTATAACCTGTTTTAATTGAAAAGGTAAAAAAATTCAATTTAAAAATTTGTTATAAGATT
255 TTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTT-AAAATCAATTATGAGATT
* * *
4307964 ATAAAACCATTTAAAGCAAGTAATAAGGCTTCCGAAGGCAAGAGTGACTATAAATGGAC-TTTCT
319 ATAAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * ** *
4308028 TGTCAATGGATGTCTTTCGCTTAATGTTTTTCGAGGTAAACAATCAATTATAATCTGTTTTAACC
384 TGTCAATGGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCT-TTTTAACC
* *
4308093 AAAAATGTGAAAAAATTC-ACATAAAATCAATTAAGAGATTATAAAACCATTTAAAGCGAGT
448 AAAAATG-GAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * * *
4308154 AATAGGGCTTTCAAAGGCCTAGGTGGCAATAAATTGGCTTTTCTTGGCAATTGATGGCTTTCACT
1 AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTT-TTGTCAA-TGATGGCTTTCACT
* * * *
4308219 TCATGTTTC-CCATGGCAAACATTCAATTATAATTTGTTTTAACCAAAAATGTAAAAAAAAATTT
64 TCACGTTTCTCGA-GGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGT--AAAAAAATTT
* * * * * *
4308283 AACTTAAAATAAATTACGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTGAATGTATG
126 AACTTAAAATCAATTATGAGATTAT-AAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATG
* **
4308348 AGTGACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTCGCTTCACGTTTCCCAAAGTAAATA
190 AGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGTAAATA
* * * *
4308413 TTCAATTGTAATATGTTTTAACCAAAAAGGAAAAAAAATTCAACTTAAAATCGATTATG-GAATT
255 TTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAG-ATT
* * *
4308477 ATAAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGCGACTATACATGGAC-TTTCT
319 ATAAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * * * * *
4308541 TGTCAATGGATGGCTTTCACTTAATGTTTCTCAAGGTAAACAATCCATTATAATCTGTTTTAACC
384 TGTCAATGGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCT-TTTTAACC
4308606 AAAA
448 AAAA
4308610 CTGTGAAAGT
Statistics
Matches: 2476, Mismatches: 433, Indels: 156
0.81 0.14 0.05
Matches are distributed among these distances:
483 182 0.07
484 185 0.07
485 8 0.00
487 2 0.00
488 1 0.00
489 2 0.00
492 1 0.00
493 6 0.00
497 2 0.00
498 2 0.00
499 2 0.00
500 2 0.00
504 5 0.00
507 3 0.00
508 106 0.04
509 209 0.08
510 113 0.05
511 8 0.00
512 168 0.07
513 835 0.34
514 626 0.25
515 8 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (508 bp):
AATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGACTTTTTTGTCAATGATGGCTTTCACTTC
ACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTTAACTT
AAAATCAATTATGAGATTATAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGAC
TATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGTAAATATTCAAT
TATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
CATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAAT
GGATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATAATCTTTTTAACCAAAAATGG
AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
Found at i:4306550 original size:171 final size:170
Alignment explanation
Indices: 4306327--4308609 Score: 2378
Period size: 171 Copynumber: 13.4 Consensus size: 170
4306317 TTGAAAGCAT
* * ** * * *
4306327 TGGATGGATTTCGTTTTGCGTTTCCTGAGGTAAACATTCAGTTATAATCTATTTCAACCAAAAAT
1 TGGATGGCTTTCGCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * * * *
4306392 ATAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAGTAATGCT
65 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * *
4306457 TCTAAAGGCATGAGTGACTATAAAAGGACTTTTCTTGTTAA
130 TCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * *
4306498 TGGATGGCTTTTGCCTCACGTTTCCTGAGGTAAACATTCGATTATAATCTATTTCAACCAAAAAT
1 TGGATGGCTTTCGCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * * * * *
4306563 ATATAAAAAATTCCACTTAAAATCAATTATGAGATTATAAAACAATATAAAGTGAGTAATAAGAC
65 GTA-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* *
4306628 TGTC-AAAGGCATGAGTGACTACAAATGGACTTTTCTT-TCCAA
129 T-TCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT-CAA
* * * ** *
4306670 TTGATGGCTTTTGCTTCACATTTCCCAAGATAAACATTCAATTATAATCTGTTTTAACCAAAAAT
1 TGGATGGCTTTCGCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * * *
4306735 GTAAAAAATTTCAACTTAAAATCAATTAAGAGATTATAGAACCATTAAAAGCGAGTAATAAGGCT
65 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
**
4306800 TCCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
130 TCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * * * * *
4306841 TGGACGACTTTCACTTCGCGTTTCTCAAGATAAACATTCGATTATAATCTATTTTAACAAAAAAT
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
4306906 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTC-TTTAAAGCGAGTAATAAGGC
65 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGCGAGTAATAAGGC
* * * *
4306970 TTAC-GAAGCCATGAGTTACTATAAATGAACTTTTCTTCTCAA
129 TT-CTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * * * * **
4307012 TGCATGGGTTTCACATCACATTT-TCGAAGGTAAATATTCAATTATAATCTCTTCTAACTGAAAA
1 TGGATGGCTTTCGCTTCACGTTTCT-G-AGGTAAACATTCAATTATAATCTGTTTTAACCAAAAA
** * * * * * *
4307076 CATAAACAAATTTAACTTAAAATTAATTATAAGGTTATAAAGCCATTTAAAGCGAGTAATAAGGC
64 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * *
4307141 TT-TCGAAGGCATAAGTGACAATAAATAGACTTTGT-TTGGCAA
129 TTCT-GAAGGCATGAGTGACTATAAATGGACTTT-TCTTGTCAA
*
4307183 TGGATGGCTTTCGCTTCACGTTTCCGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATG
1 TGGATGGCTTTCGCTTCACGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATG
*
4307248 TAAAAAAAATT-AACTTTAAATCAATTATGAGATTATAAAA--ATTTAAAGCGAGTAATAAGGCT
66 T-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * ** * * * *
4307310 TTTGAAGGGATGAGTGGTTATAAATGAAGTTTTCTTCTTAA
130 TCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * * *
4307351 CGAATGGCTTTCGCTTCACGTTTCTCGAGGTAAATATTCAA-AATGATCTGTTTTAATCAAAAAG
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* *
4307415 GTAAAAAAATTCAACCTAAAATCAATTATGAAATTATAAAACCATTTAAAGCGAGTAATAAGGCT
65 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * *
4307480 T-TCGAAGGCATGAGTGACTATAAATGAACTTTTTTTCTCAA
130 TCT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * * *
4307521 TGGGTGGCTTTCGCATCATGTTTCTCGAGATAAATATTCAATTAGAATCTGTTTTAACTAAAAAT
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * * *
4307586 GTGAAAAAATTC-ACATAAAATCAATTAGGAGATTATAAAACCATTTAAAGCGAGTAATAAGCCT
65 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * *
4307650 TTTGAAGGAATCAGTGACTACAAATCGACTTTTCTTGTCAA
130 TCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * *
4307691 TGGATGACTTTCGCATCATGTTTCTCGAGGTAAACATTTAATTATAATCTGTTTTAACTAAAAAT
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * *
4307756 GTAAAAACAATTGAAGC-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCAACTAATAAGG
65 GTAAAAA-AATTCAA-CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* *
4307820 CTT-TCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAA
128 CTTCT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * * * * *** *
4307863 TGCATGGCTTTTGCTTCACGTTTTTCAAAGCAAATATTCAATTATAACCTGTTTTAATTGAAAAG
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* *** * *
4307928 GTAAAAAAATTCAATTTAAAAATTTGTTATAAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
65 GTAAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* *
4307993 TTCCGAAGGCAAGAGTGACTATAAATGGAC-TTTCTTGTCAA
129 TTCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * *
4308034 TGGATGTCTTTCGCTTAATGTTTTTCGAGGTAAACAATCAATTATAATCTGTTTTAACCAAAAAT
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * * *
4308099 GTGAAAAAATTC-ACATAAAATCAATTAAGAGATTATAAAACCATTTAAAGCGAGTAATAGGGCT
65 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * *
4308163 T-TCAAAGGCCT-AGGTGGCAATAAATTGG-CTTTTCTTGGCAA
130 TCT-GAAGGCATGA-GTGACTATAAA-TGGACTTTTCTTGTCAA
* * * ** * *
4308204 TTGATGGCTTTCACTTCATGTTTCCCATGGCAAACATTCAATTATAATTTGTTTTAACCAAAAAT
1 TGGATGGCTTTCGCTTCACGTTTCTGA-GGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* * * * *
4308269 GTAAAAAAAAATTTAACTTAAAATAAATTACGAGATTATAAAACCATTTAAAACAAGTAATAAGG
65 GT--AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* * * * * *
4308334 CTTTTGAATGTATGAGTGACTATAAATGAACTTTTCTTCTCAT
128 CTTCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** * * * * *
4308377 TGGATGGCTTTCGCTTCACGTTTCCCAAAGTAAATATTCAATTGTAATATGTTTTAACCAAAAAG
1 TGGATGGCTTTCGCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAT
* *
4308442 GAAAAAAAATTCAACTTAAAATCGATTATG-GAATTATAAAACCATTTAAAGCGAGTAATAAGGC
65 GTAAAAAAATTCAACTTAAAATCAATTATGAG-ATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * *
4308506 TTCCGAAGGCATGAGCGACTATACATGGAC-TTTCTTGTCAA
129 TTCTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * *
4308547 TGGATGGCTTTCACTTAATGTTTCTCAAGGTAAACAATCCATTATAATCTGTTTTAACCAAAA
1 TGGATGGCTTTCGCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTTAACCAAAA
4308610 CTGTGAAAGT
Statistics
Matches: 1765, Mismatches: 302, Indels: 91
0.82 0.14 0.04
Matches are distributed among these distances:
167 10 0.01
168 118 0.07
169 75 0.04
170 429 0.24
171 641 0.36
172 362 0.21
173 125 0.07
174 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (170 bp):
TGGATGGCTTTCGCTTCACGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATG
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
CTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
Found at i:4312192 original size:172 final size:171
Alignment explanation
Indices: 4311509--4315663 Score: 4642
Period size: 172 Copynumber: 24.2 Consensus size: 171
4311499 GGGCTTAACA
* * ** * *
4311509 TAAAATAAATTAGGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCCTAAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* ** ** * *
4311574 ACAATAAATTG-ACTTTTCTTGGCAATGGATGGCTTTCACTTCATGTTTCCCATGGCAAACATTC
66 ACTATAAA-TGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCA-GGTAAACATTC
*
4311638 AATTATAATCTGTTTTAACCAAAAAATATAAAAAAAATTCAACT
129 AATTATAATCTGTTTTAACC-AAAAATGTAAAAAAAATTCAACT
* * * * *
4311682 TAAAATAAATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTGAAGGTATGAGAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * * *
4311747 ACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTCGCTTCACGTTTCCCTAAGCAAATATTTA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCC-AGGTAAACATTCA
** * *
4311812 ATTATAA-CTTGTTTTAACCAAAAA-GGCAAAAAAAGTCAGCT
130 ATTATAATC-TGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * ** * *
4311853 TAAAATCGATTATGGGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCCGAAGGCATGGGCG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * * *
4311918 ACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTCGCTTAATGCTTCCCAAGGTAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCC-AGGTAAACATTCA
* * *
4311982 GTTATAATCTGTTTTAACCAAAAATATGAAAAAAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* *
4312024 TAGAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* ** * ** * * *
4312089 ACAATAAATGGGCATTTCTTGGCAATGGATGGCTTTTGATTCACATTTCCCATGGAAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCA-GGTAAACATTCA
* *
4312154 ATTATAATCTCTTTTAATCAAAAATGTAAAAAAAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * *
4312196 TAAAATAAATTATGAGATTATAAAGCCATTTAAAGCGA-TCGATAAGGCTTTCGAAGGCATGAGT
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT-AATAAGGCTTTTGAAGGCATGAGT
* * * * * *
4312260 GACTATATATGGAC-TTTCTTGTCAATGGATGGCTTTCGCTTAATGTTTCCCAAGGTAAACATTC
65 GACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCC-AGGTAAACATTC
* *
4312324 AATCATGATCTGTTTTAACCAAAAAATGTAAAAAAAATTCAACT
129 AATTATAATCTGTTTTAACC-AAAAATGTAAAAAAAATTCAACT
* * * * * *
4312368 TAAAATTAATTATGAGATTGTAAAACCATTTAAAGTGAGTAATAA-GTTGTTTGAAAGAATGAGT
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT-TTTGAAGGCATGAGT
* * * * ** * * *
4312432 GACCATAAATCATCTTTTCTTGTCAATGGATGGCTTTCACATCATGTTTCCCAAAGTAAACATTC
65 GACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCC-AGGTAAACATTC
* * * *
4312497 AATTATAATATGTTTTGACTAAAAATGTAAAAAAAAATTCAACC
129 AATTATAATCTGTTTTAACCAAAAATGT-AAAAAAAATTCAACT
* *
4312541 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * * *
4312606 ACTATATATGAACTTTTCTTCTCAATGTATGGCTTTTGCTTCACGTTTCCCAAAGCAAATAATCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCC-AGGTAAACATTCA
* * * **
4312671 ATTATAACCTGTTTTAACTC-AAAAGGT-AAAAATATTCATTT
130 ATTATAATCTGTTTTAAC-CAAAAATGTAAAAAAAATTCAACT
* *
4312712 TAAAATCGATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGTATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * * *** * * *
4312777 ACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTCGCTTAATGTTTTTGAGGTAAGCAATCGA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCAGGTAAACATTCAA
* * *
4312841 TTATAATATGTTTTTAACCAAAAATGT-GAACAAATTC-ACT
131 TTATAATCTG-TTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * * * *
4312881 TCAAATCAATTAAGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGCCTAAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * *
4312946 ACAATAAATGGACTTTTCTTGGT-AATGGATGGCTTTCGCTTCAGGTTTCCCATGGTAAACATTC
66 ACTATAAATGAACTTTTCTT-CTCAATGGATGGCTTTTGCTTCACGTTTCCCA-GGTAAACATTC
*
4313010 AATTATAATCTGTTTTAACTAAAAATGTAAAAAAAATTCAACT
129 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * * * *
4313053 TAAAATAAATTACGAGATTATAAAACCATTTAAAGCAAGTAATAATGCTTTCGAAGGTATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * * * * *
4313118 ACTATAAATGAACTTTTCTTCTCATTGGATGACTTTCGCTTCATGTTTCTCAAAGCAAATATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATTCA
* * * * ** *
4313183 ATTATAACCTATTTTAATCAGAAA-GGGAAAATAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * *
4313224 TCAAATCGATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTGAAGGCATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * *
4313289 ACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTTGCTTAATGCTTCCCAAGGTAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCC-AGGTAAACATTCA
**
4313353 GCTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
4313394 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * ** * ** *
4313459 ACAATAAATGGACTTTCCTTGGCAATGGATGGCTTTTGCTTCATGTTTCCCATGAAAAACAATCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCA-GGTAAACATTCA
*
4313524 AATATAATCTGTTTTAA-CAAACAATGT-AAAAAAATTCAACT
130 ATTATAATCTGTTTTAACCAAA-AATGTAAAAAAAATTCAACT
* * * * * *
4313565 TAAAATCAATTATGAGATTATATAACCATTTAAAGGGAGAAACAAAGCTTTTGAAGGCATAAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * *
4313630 ACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATTCA
4313695 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * * * *
4313737 TAAAATCAATTATGAGATTATATAACCATTTAAAGGGAGAAACAAAGCTTTTGAAGGCATAAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * *
4313802 ACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATTCA
*
4313867 ATTATAATCTGTTTTAACCAAAAATGTAAAAACAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
** * * *
4313909 TAAAATCAATTATGAGATTATATGATCATTTAAAG-GCA-TAAATAAAGCTTTTGAAGGCATAAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGT-AATAAGGCTTTTGAAGGCATGAG
* * * * *
4313972 TGACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATT
64 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATT
4314037 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
128 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
** * * *
4314081 TAAAATCAATTATGAGATTATATGATCATTTAAAG-GCA-TAAATAAAGCTTTTGAAGGCATAAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGT-AATAAGGCTTTTGAAGGCATGAG
* * * * *
4314144 TGACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATT
64 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATT
4314209 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
128 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
** * * *
4314253 TAAAATCAATTATGAGATTATATGATCATTTAAAG-GCA-TAAATAAAGCTTTTGAAGGCATAAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGT-AATAAGGCTTTTGAAGGCATGAG
* * * * *
4314316 TGACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATT
64 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATT
4314381 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
128 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
** * * *
4314425 TAAAATCAATTATGAGATTATATGATCATTTAAAG-GCA-TAAATAAAGCTTTTGAAGGCATAAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGT-AATAAGGCTTTTGAAGGCATGAG
* * * * *
4314488 TGACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATT
64 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATT
4314553 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
128 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
** * * *
4314597 TAAAATCAATTATGAGATTATATGATCATTTAAAG-GCA-TAAATAAAGCTTTTGAAGGCATAAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGT-AATAAGGCTTTTGAAGGCATGAG
* * * * *
4314660 TGACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATT
64 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATT
4314725 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
128 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
** * * *
4314769 TAAAATCAATTATGAGATTATATGATCATTTAAAG-GCA-TAAATAAAGCTTTTGAAGGCATAAG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGT-AATAAGGCTTTTGAAGGCATGAG
* * * * *
4314832 TGACTATAAAAGAAGTTTTCTTCTCAATGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACATT
64 TGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATT
4314897 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
128 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* ** *
4314941 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTACGAAGCCATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * * * * * * *
4315006 ACTATAAATGAACTTTTCTTCTAAAATGGATGGCATTCGCATCGCGTTTCCTGAGATAAATACTC
66 ACTATAAATGAACTTTTCTTCT-CAATGGATGGCTTTTGCTTCACGTTTCC-CAGGTAAACATTC
* * *
4315071 AATTATAATCTATTTTAACAAAAAATGT-GAAAAAATTC-ACT
129 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * * * * *
4315112 TAAAATCAATTAAGAGATTATAAAACCATTTAAAGCAAATACTAAGGCTTTCGAAGCCATAAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * ** *** * *
4315177 ACAATAAATGGACTTTTCTTGGCAATGGATGGCTTTCATTTCACGTTTCTCATGGCAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCA-GGTAAACATTCA
* *
4315242 ATTATAATCTGTTTTAACTAAAAA--TATAAAAAATTCAACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* ** *
4315282 TAAAATAAAAAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* ** * * * *
4315347 ACTATAAATGAACTTTTCTTC-CTAATGGATTGCTTGCGTTTCACGTTTCACGAGGCAAATATTC
66 ACTATAAATGAACTTTTCTTCTC-AATGGATGGCTTTTGCTTCACGTTTC-CCAGGTAAACATTC
* * ** ***
4315411 ACTTATAATCTGTTCTAACCAAAAA-GGCATTCAAATTCAACT
129 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * * * * *
4315453 TAAAACCAATTATGAGATTATAAAACTATTTAAAGCGTGCAATAATGCTTTCGAAGGTATGAGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
* * * ** * * * *
4315518 ACTATAAATGGACTTTTCTTATCAATGGATGGATTTCCCTTCACATTTTTCGAGGCAAACATTCA
66 ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCAC-GTTTCCCAGGTAAACATTCA
* * * *
4315583 ATTGTAATTTATTTTAACC-AAAATGTAAAAAAACTT-AACT
130 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
* * * *
4315623 TAAAATCAATTATGAGATTACAAAAGCGTTTGAAGCGAGTA
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
4315664 TGTCAAACCC
Statistics
Matches: 3529, Mismatches: 405, Indels: 99
0.88 0.10 0.02
Matches are distributed among these distances:
168 1 0.00
169 100 0.03
170 529 0.15
171 836 0.24
172 1672 0.47
173 388 0.11
174 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTG
ACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCAGGTAAACATTCAA
TTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACT
Found at i:4317271 original size:13 final size:13
Alignment explanation
Indices: 4317253--4317277 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4317243 GGAGAAATTG
4317253 TGATTTTATAAAA
1 TGATTTTATAAAA
4317266 TGATTTTATAAA
1 TGATTTTATAAA
4317278 TTTTTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:4326748 original size:13 final size:13
Alignment explanation
Indices: 4326730--4326754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4326720 GGAAAATGGG
4326730 ATTTTATAAAATA
1 ATTTTATAAAATA
4326743 ATTTTATAAAAT
1 ATTTTATAAAAT
4326755 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:4329373 original size:171 final size:171
Alignment explanation
Indices: 4329051--4332902 Score: 3785
Period size: 171 Copynumber: 22.7 Consensus size: 171
4329041 GTGACAGAGA
* * * * ** * * * **
4329051 AATAAGGCTTTCAAATGCATCAATGACTGCAAATGGACCTTT-TTGTCAATGGATGGCTTTCATT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * *
4329115 TCACGTTTCCT-AAGGCAAACAAGT-AACTATCATCTGTCTTAACCAAAAATGTAAAAAACATTC
66 TCACGTTTCCTGAA-GCAAAC-ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAA-ATTC
* * *
4329178 AA-TCGAAAATAAATTATGAGATTATAAAACCATTTAAAGTGAGT
128 AACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
4329222 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGCATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * * *
4329287 TCACGTTTCCTGAAGCAAATAGTCAATTATAACCTGTTTCAACCAAAAAGGCAAAAATATTCAAC
66 TCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
** *
4329352 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTTATT
131 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
4329393 GATAAGGCTTACGAA-GCTATGAGTGACTATAAATGAAC-TTTCTTCTCAATGGATGGCTATCGC
1 AATAAGGCTTTCGAAGGC-ATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGC
* * * ** * * *
4329456 ATCACGTTTCTTGAGGTGAATATTCAATTATAATCTATTTTAAGCAAAAA-GTAAAAAAATTC-A
65 TTCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * *
4329519 CTTAAAATC-ATTAGGAGATTATAAAACTATTTAAAGCAAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * ** ** *
4329560 AATAAGACTTACGAAGGTATAAGTGACAATAAATGGGCTTTTCTTAGCAATGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * ** *
4329625 ACACGCTTCCCATG--GCAAACATTCAATTATAATCTGTTTTAAAGAAAAATGTAAAAAATTTCA
66 TCACG-TTTCC-TGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
* * * *
4329688 ACTTAAAATGAATTATTAGATTGTGAAACCATTTAAAGCGAGT
129 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * *
4329731 AATAAGACTTTCGAAAGCTTGAGTGACTATAAATGAACTTTTCTTGTCAACGCATGACTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * *
4329796 TCACGTTTCC-CAAGGTAAACAATCAATTATAATCTATTTTAA-CAAAAATGTAAAAAAATTCAA
66 TCACGTTTCCTGAA-GCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
*
4329859 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* *
4329901 AATAAGGCTTTCGAAGGTATGAGTGACTATAAATGAACTTTTC-TCATCAATGGATGGCTTTCCC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTC-TCAATGGATGGCTTTCGC
* * * ** *
4329965 TTCATGTTTCC-CAAGGTAAACATTCAATTATAATCTGCCTTAACCAAAAATGTGAAAAAATTCA
65 TTCACGTTTCCTGAA-GCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
* * *
4330029 ACTTAAAATAAATTATAAGATTCTAAAACCATTTAAAGTC-AGT
129 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-CGAGT
* * * * * *
4330072 AATAAGACTTTCAAAGGAATGAGGGACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * ** * * *
4330137 TTATGTTGCCCAAAGAAAATATTCAATTATAACCTGTTTTAACCAAAAATGTAAAAACAATTCAA
66 TCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA-AATTCAA
** * * *
4330202 CTTAAAATTGATAATGAAATTATAAAACCATTTAAAGCAAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *** *
4330244 AATAAGGCTTTTGAAGGCCTGAGTGACAATAAATGGAC-TTTCTTGGGAATGGATGGCTTTAGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * *
4330308 TCATGTTTCTCATG--GCAAACATTCAATTATAATCTGTTATAACTAAAAATGTTAAAAAAAGTC
66 TCACGTTTC-C-TGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATG-TAAAAAAATTC
*
4330371 AACTTCAAAT-AGATTATGAGATTATAAAACCATTTAAAGCGAGT
128 AACTTAAAATCA-ATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * *
4330415 AATATGGTTTTCGAAGGCATAAGTGACTATAAATGCA-TATTTCTTCCCAAT-GATGGCTTTTGC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTTCTTCTCAATGGATGGCTTTCGC
* * * * ** * *
4330478 TTCGCGTTTCATGAGGCAAATATTCTCTTATAATCTGTTTTAACC-AAGATGTAAAAGAATTCAA
65 TTCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* *
4330542 CTTAAAATCAATTACGAGATTATAAAACCATTTAAAGCAAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * *
4330584 AATAAGGCTTTTGAAGGCATAAGTAACTATAAATGGACTTTTCTTGTTAGTGGATGAGC-TTCCC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATG-GCTTTCGC
* * * *
4330648 TTCACGTTT-CTCAAGCTAAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAACATTCA
65 TTCACGTTTCCTGAAGC-AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
* *
4330712 ACTTAAAATCAATTAGGAGGTTATAAAACCATTTAAAGCGAGT
129 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * **
4330755 AATAAAGCTTTTGAAGGCATGAGTGATTACAAATGGACTTTTCTTGTCAATAGATGGCTTTCATT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * * **
4330820 TCATGTTTCTTGAGGTAAACA-TCTAATTATAATCTGTTTTAACAAAAAATGCAAAATCATTCAA
66 TCACGTTTCCTGAAGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
*
4330884 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
4330926 AATAAGACTTTTGAAGCCATGAGTTACTATAAATGAACTTTTCTTCTCAATGGATGGC--T---T
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * ** *
4330986 T--C----CC-GAGGCAAACA-TCTAACTATCATCTGTTTTAATAAAAAATATAAAAAAATTCAA
66 TCACGTTTCCTGAAGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * *
4331043 CTTAAAATAAATTATGAGATTATAAAACCATTTAACGCAAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
4331085 AATAAAGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * ** * * *
4331150 TCATGTTCCCCAAAGCAAATATTTAATTATAAGT-TGTTTTAACCAAAAAGGTAAAAAAATTCAA
66 TCACGTTTCCTGAAGCAAACATTCAATTATAA-TCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* **
4331214 CTTAAAATCGAA-TATGAGATTATAAAACCATTTAAAGTGACC
130 CTTAAAATC-AATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *** *
4331256 AATAAGGCTTTCGAAGGCCTAAGTGACAATAAATGGACTTTTCTTGAGAATGGATGGCTTTAGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
** * *
4331321 TCTTGTTTCTCATG--GCAGACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAAATTC
66 TCACGTTTC-C-TGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTC
* *
4331384 AACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCTAGT
128 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *
4331428 AATATGGCTTTCGAAGGTATAAGTGACTATAAATGAA-TATTTCTTCCCAAT-GACGGCTTTCGC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTTCTTCTCAATGGATGGCTTTCGC
* * * ** * * *
4331491 TTCACGTTTCATGAGGCAAATATTCTCTCATAATCTGTTTTAATC-AAAATGAAAAAAAATTCAA
65 TTCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* *
4331555 TTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCGAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *
4331597 AATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAGTGGATGGGC-TTCCC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGAT-GGCTTTCGC
* *
4331661 TTCACGTTTCC-GGAGCCAAACATTCAATTATAATCTGTTTTAACCAAAAATTTAAAAAAAATT-
65 TTCACGTTTCCTGAAG-CAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTC
* *
4331724 AACTTAAAATCAATTATAAGGTTATAAAACCATTTAAAGCGAGT
128 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *
4331768 AATAAGGCTTTGGAAGGCATGAGTGATTACAAATGAACTTTTCTTGTCAATGGATGGCTTTCACT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * *
4331833 TCATGTTT-CTCGAGGTAAACA-TCTAATTATAATCTGTTTTAACAAAAAATGCAAAAACATTCA
66 TCACGTTTCCT-GAAGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
* *
4331896 ACTTAAAATCAATTATAAGATTATAAAACCATTTAAAGTGAGT
129 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* ** ** * * **
4331939 AATAAGACTTTTAAAACCATGAATGACTATAAATAAACTTTTCAACTCAATGGATGGC--T---T
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * ** *
4331999 T--C----CC-GAGGCAAACA-TCTAACTATCATCTGTTTTAATAAAAAATATAAAAAAATTCAA
66 TCACGTTTCCTGAAGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * *
4332056 CTTAAAATAAATTATGAGATTATATAACCATTTAAAGCTAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* *
4332098 AATAAGGCTTTCGAGGGCATGAGTGACTATAAATGAAATTTTCTTCTCAATGGATGGCTTTCGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * * ** *
4332163 CCACGTTTCCAGAGGTAAACATTCAGTTATAATCTCTTTTAACCAAAAGGGTAAAAAAATTCAAT
66 TCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
* *
4332228 TTAAAATCAATTATCAGATTATAAAATCATTTTAAA-C-AGGT
131 TTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGCGA-GT
* * * * *
4332269 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAAATTTTTTTTTCAATGCATGAC-TTCTGC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTC-GC
* * * * * * *
4332333 TTCACATTGCC-CAAGGTAAACAATCACTTATAGTCTGTTTTAACCAAAAATGT--AAAAA---A
65 TTCACGTTTCCTGAA-GCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
* ** *
4332392 A--TAAAATCAATTATGAGATCATAAAACCATTTGGAGGGAGT
129 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * * *
4332433 AATTAGCCTTTCAAAGGAATGAGTGACTACAAATTAACTTTTGTTGTCAATGGATGGCTTTCGCA
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * *
4332498 TCACGTTT-CTCAAGGCAAACATTCAATTATATTCTGTTTTAA-CAACAAATGTAAAAAAGAATC
66 TCACGTTTCCTGAA-GCAAACATTCAATTATAATCTGTTTTAACCAA-AAATGTAAAAAA-ATTC
* *
4332561 AACCTAAAATCAATTATGAGATTATAAAACCATTTTAAAGTGAGT
128 AACTTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGCGAGT
* * * * *
4332606 AATAAGGCTTTTGAAGGTATGAGTGACTATAAATGAACTTTCCATCTCAATGGATGCCTTTCGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * *
4332671 TCATGTTTCCCGAGGCAAACA-TCTAACTATCATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
66 TCACGTTTCCTGAAGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * *
4332735 CTTAAAGTAAATTATGAGATTATAAAACCATTTAAAGCAAGT
130 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
4332777 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCCATGGATAGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * * *
4332842 TTACGTTT-CTGGAGGTAAATATTCAATTGTAATCTCTTTTAACCAAAAAGGTAAAAAAATT
66 TCACGTTTCCT-GAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATT
4332903 ATGTGATATC
Statistics
Matches: 3049, Mismatches: 522, Indels: 220
0.80 0.14 0.06
Matches are distributed among these distances:
159 264 0.09
160 1 0.00
161 3 0.00
163 8 0.00
164 119 0.04
165 4 0.00
166 11 0.00
167 57 0.02
168 65 0.02
169 223 0.07
170 348 0.11
171 1510 0.50
172 328 0.11
173 104 0.03
174 4 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (171 bp):
AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
TCACGTTTCCTGAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
Found at i:4330288 original size:512 final size:511
Alignment explanation
Indices: 4329051--4332902 Score: 4016
Period size: 512 Copynumber: 7.6 Consensus size: 511
4329041 GTGACAGAGA
* * * * ** * * * **
4329051 AATAAGGCTTTCAAATGCATCAATGACTGCAAATGGACCTTT-TTGTCAATGGATGGCTTTCATT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * *
4329115 TCACGTTTCCTAAGGCAAACAAGT-AACTATCATCTGTCTTAACCAAAAATGTAAAAAACATTCA
66 TCACG-TTCCCAAAGCAAAC-ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAA-ATTCA
* * * *
4329179 A-TCGAAAATAAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATG
128 ACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * *
4329243 AGTGACTATAAATGAACTTTTCTTCTCAATGCATGGCTTTTGCTTCACGTTTCCTGAA-GCAAAT
192 AGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-CTCAAGGTAAAC
* * * * * *
4329307 AGTCAATTATAACCTGTTTCAACCAAAAAGGCAAAAATATTCAACTTAAAATCAATTATGAGATT
256 AATCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * *
4329372 ATAAAACCATTTAAAGTTATTGATAAGGCTTACGAA-GCTATGAGTGACTATAAATGAAC-TTTC
321 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGC-ATGAGTGACTATAAATGAACTTTTC
* * ** * * *
4329435 TTCTCAATGGATGGCTATCGCATCACGTTTCTTGAGGTGAATATTCAATTATAATCTATTTTAAG
385 TTCTCAATGGATGGCTTTCGCTTCACGTTTC-TGAGGCAAACATTCAATTATAATCTGTTTTAAT
* * *
4329500 CAAAAA-GTAAAAAAATTC-ACTTAAAAT-CATTAGGAGATTATAAAACTATTTAAAGCAAGT
449 CAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * * * * ** ** *
4329560 AATAAGACTTACGAAGGTATAAGTGACAATAAATGGGCTTTTCTTAGCAATGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* ** ** *
4329625 ACACGCTTCCCATGGCAAACATTCAATTATAATCTGTTTTAAAGAAAAATGTAAAAAATTTCAAC
66 TCACG-TTCCCAAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
* * * * * * *
4329690 TTAAAATGAATTATTAGATTGTGAAACCATTTAAAGCGAGTAATAAGACTTTCGAAAGCTTGAGT
130 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGT
* * * *
4329755 GACTATAAATGAACTTTTCTTGTCAACGCATGACTTTTGCTTCACGTTTCCCAAGGTAAACAATC
195 GACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAATC
*
4329820 AATTATAATCTATTTTAA-CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
260 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* *
4329884 AACCATTTAAAGAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGAACTTTTC-TCAT
325 AACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTC-T
* * ** * ** *
4329948 CAATGGATGGCTTTCCCTTCATGTTTCCCAAGGTAAACATTCAATTATAATCTGCCTTAACCAAA
389 CAATGGATGGCTTTCGCTTCACGTTT-CTGAGGCAAACATTCAATTATAATCTGTTTTAATCAAA
* * *
4330013 AATGTGAAAAAATTCAACTTAAAATAAATTATAAGATTCTAAAACCATTTAAAGTC-AGT
453 AATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAG-CAAGT
* * * * * *
4330072 AATAAGACTTTCAAAGGAATGAGGGACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * *
4330137 TTATGTTGCCCAAAGAAAATATTCAATTATAACCTGTTTTAACCAAAAATGTAAAAACAATTCAA
66 TCACGTT-CCCAAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA-AATTCAA
** * * * * *
4330202 CTTAAAATTGATAATGAAATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCCTGAG
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAG
* * ** * * * * *
4330267 TGACAATAAATGGAC-TTTCTTGGGAATGGATGGCTTTAGCTTCATGTTTCTCATGGCAAACATT
194 TGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAAT
* * * *
4330331 CAATTATAATCTGTTATAACTAAAAATGTTAAAAAAAGTCAACTTCAAAT-AGATTATGAGATTA
259 CAATTATAATCTGTTTTAACCAAAAATG-TAAAAAAATTCAACTTAAAATCA-ATTATGAGATTA
* * * * *
4330395 TAAAACCATTTAAAGCGAGTAATATGGTTTTCGAAGGCATAAGTGACTATAAATGCA-TATTTCT
322 TAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTTCT
* * * * **
4330459 TCCCAAT-GATGGCTTTTGCTTCGCGTTTCATGAGGCAAATATTCTCTTATAATCTGTTTTAA-C
386 TCTCAATGGATGGCTTTCGCTTCACGTTTC-TGAGGCAAACATTCAATTATAATCTGTTTTAATC
* * * * *
4330522 CAAGATGTAAAAGAATTCAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGCAAGT
450 AAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * * * * * * *
4330584 AATAAGGCTTTTGAAGGCATAAGTAACTATAAATGGACTTTTCTTGTTAGTGGATGAGC-TTCCC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATG-GCTTTCGC
* * * *
4330648 TTCACGTTTCTC-AAGCTAAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAACATTCA
65 TTCACG-TTCCCAAAGC-AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
* * * *
4330712 ACTTAAAATCAATTAGGAGGTTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAGGCATGA
128 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
* * * * *** * **
4330777 GTGATTACAAATGGACTTTTCTTGTCAATAGATGGCTTTCATTTCATGTTTCTTGAGGTAAAC-A
193 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAA
* * **
4330841 TCTAATTATAATCTGTTTTAACAAAAAATGCAAAATCATTCAACTTAAAATCAATTATGAGATTA
258 TC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * * *
4330906 TAAAACCATTTAAAGTGAGTAATAAGACTTTTGAAGCCATGAGTTACTATAAATGAACTTTTCTT
322 TAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT
* * *
4330971 CTCAATGGATGGC--T---TTC-C----C-GAGGCAAACA-TCTAACTATCATCTGTTTTAATAA
387 CTCAATGGATGGCTTTCGCTTCACGTTTCTGAGGCAAACATTC-AATTATAATCTGTTTTAATCA
* *
4331024 AAAATATAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAACGCAAGT
451 AAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * * *
4331085 AATAAAGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * *
4331150 TCATGTTCCCCAAAGCAAATATTTAATTATAAGT-TGTTTTAACCAAAAAGGTAAAAAAATTCAA
66 TCACGTT-CCCAAAGCAAACATTCAATTATAA-TCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* ** * *
4331214 CTTAAAATCGAA-TATGAGATTATAAAACCATTTAAAGTGACCAATAAGGCTTTCGAAGGCCTAA
129 CTTAAAATC-AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
* * ** * ** * * * *
4331278 GTGACAATAAATGGACTTTTCTTGAGAATGGATGGCTTTAGCTTCTTGTTTCTCATGGCAGACAT
193 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAA
* *
4331343 TCAATTATAATCTATTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATAAATTATGAGATTA
258 TCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * *
4331408 TAAAACCATTTAAAGCT-AGTAATATGGCTTTCGAAGGTATAAGTGACTATAAATGAA-TATTTC
322 TAAAACCATTTAAAG-TGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTTC
* * * ** *
4331471 TTCCCAAT-GACGGCTTTCGCTTCACGTTTCATGAGGCAAATATTCTCTCATAATCTGTTTTAAT
385 TTCTCAATGGATGGCTTTCGCTTCACGTTTC-TGAGGCAAACATTCAATTATAATCTGTTTTAAT
* * *
4331535 C-AAAATGAAAAAAAATTCAATTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCGAGT
449 CAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGT
* * * * *
4331597 AATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAGTGGATGGGC-TTCCC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGAT-GGCTTTCGC
* ** *
4331661 TTCACGTTTCCGGAGCCAAACATTCAATTATAATCTGTTTTAACCAAAAATTTAAAAAAAATT-A
65 TTCACGTTCCCAAAG-CAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTCA
* * *
4331725 ACTTAAAATCAATTATAAGGTTATAAAACCATTTAAAGCGAGTAATAAGGCTTTGGAAGGCATGA
128 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
* * ** * *
4331790 GTGATTACAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTCGAGGTAAAC-A
193 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAA
* * * *
4331854 TCTAATTATAATCTGTTTTAACAAAAAATGCAAAAACATTCAACTTAAAATCAATTATAAGATTA
258 TC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* ** ** * * **
4331919 TAAAACCATTTAAAGTGAGTAATAAGACTTTTAAAACCATGAATGACTATAAATAAACTTTTCAA
322 TAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT
* * *
4331984 CTCAATGGATGGC--T---TTC-C----C-GAGGCAAACA-TCTAACTATCATCTGTTTTAATAA
387 CTCAATGGATGGCTTTCGCTTCACGTTTCTGAGGCAAACATTC-AATTATAATCTGTTTTAATCA
* * *
4332037 AAAATATAAAAAAATTCAACTTAAAATAAATTATGAGATTATATAACCATTTAAAGCTAGT
451 AAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGT
* *
4332098 AATAAGGCTTTCGAGGGCATGAGTGACTATAAATGAAATTTTCTTCTCAATGGATGGCTTTCGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * * ** *
4332163 CCACGTTTCCAGAGGTAAACATTCAGTTATAATCTCTTTTAACCAAAAGGGTAAAAAAATTCAAT
66 TCACGTTCCCA-AAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
* *
4332228 TTAAAATCAATTATCAGATTATAAAATCATTTTAAA-C-AGGTAATAAGGCTTTCGAAGGCATGA
130 TTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGCGA-GTAATAAGGCTTTCGAAGGCATGA
* * * * * * * * *
4332291 GTGACTATAAATGAAATTTTTTTTTCAATGCATGACTTCTGCTTCACATTGCCCAAGGTAAACAA
193 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAA
* * *
4332356 TCACTTATAGTCTGTTTTAACCAAAAATGT--AAAAA---AA--TAAAATCAATTATGAGATCAT
258 TCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
** * * * * * * * * *
4332414 AAAACCATTTGGAGGGAGTAATTAGCCTTTCAAAGGAATGAGTGACTACAAATTAACTTTTGTTG
323 AAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTC
* * *
4332479 TCAATGGATGGCTTTCGCATCACGTTTCTCAAGGCAAACATTCAATTATATTCTGTTTTAA-CAA
388 TCAATGGATGGCTTTCGCTTCACGTTTCT-GAGGCAAACATTCAATTATAATCTGTTTTAATCAA
* * * **
4332543 CAAATGTAAAAAAGAATCAACCTAAAATCAATTATGAGATTATAAAACCATTTTAAAGTGAGT
452 -AAATGTAAAAAA-ATTCAACTTAAAATAAATTATGAGATTATAAAACCA-TTTAAAGCAAGT
* * * * *
4332606 AATAAGGCTTTTGAAGGTATGAGTGACTATAAATGAACTTTCCATCTCAATGGATGCCTTTCGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
* * * * * *
4332671 TCATGTTTCCCGAGGCAAACA-TCTAACTATCATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
66 TCACG-TTCCCAAAGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
* * *
4332735 CTTAAAGTAAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAG
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAG
* * * * ** * *
4332800 TGACTATAAATGAACTTTTCTTCTCCATGGATAGCTTTTGCTTTACGTTTCTGGAGGTAAATATT
194 TGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAAT
* * *
4332865 CAATTGTAATCTCTTTTAACCAAAAAGGTAAAAAAATT
259 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATT
4332903 ATGTGATATC
Statistics
Matches: 2761, Mismatches: 488, Indels: 185
0.80 0.14 0.05
Matches are distributed among these distances:
494 80 0.03
496 3 0.00
499 10 0.00
500 64 0.02
501 558 0.20
502 111 0.04
503 2 0.00
504 1 0.00
505 2 0.00
506 40 0.01
507 49 0.02
508 331 0.12
509 223 0.08
510 83 0.03
511 273 0.10
512 675 0.24
513 162 0.06
514 92 0.03
515 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (511 bp):
AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGGATGGCTTTCGCT
TCACGTTCCCAAAGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACT
TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTG
ACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACAATCA
ATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
ACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCA
ATGGATGGCTTTCGCTTCACGTTTCTGAGGCAAACATTCAATTATAATCTGTTTTAATCAAAAAT
GTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGT
Found at i:4330574 original size:683 final size:679
Alignment explanation
Indices: 4329051--4332902 Score: 4041
Period size: 683 Copynumber: 5.7 Consensus size: 679
4329041 GTGACAGAGA
* * * * ** * * ***
4329051 AATAAGGCTTTCAAATGCATCAATGACTGCAAATGGACCTTT-TTGTCAATGGATGGCTTTCATT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * *
4329115 TCACGTTTCCTAAGGCAAACAAGT-AACTATCATCTGTCTTAACCAAAAATGTAAAAAACATTCA
66 TCACGTTT-CTAAGGCAAAC-ATTCTATTATAATCTGTTTTAACC-AAAATGTAAAAAA-ATTCA
* * *
4329179 A-TCGAAAATAAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATG
127 ACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATG
* ** * *
4329243 AGTGACTATAAATGAACTTTTCTTC-TCAATGCATGGCTTTTGCTTCACGTTTCCTGAA-GCAAA
191 AGTGACTATAAATGAACTTTTCTTCATCAATGGATGGCTTTCCCTTCATGTTTCC-CAAGGCAAA
* * * * * * * * *
4329306 TAGTCAATTATAACCTGTTTCAACCAAAAAGGCAAAAATATTCAACTTAAAATCAATTATGAGAT
255 CATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGAT
* * * *
4329371 TATAAAACCATTTAAAGTTATTGATAAGGCTTACGAA-GCTATGAGTGACTATAAATGAAC-TTT
320 TATAAAACCATTTAAAGCTAGTAATAAGGCTTTCGAAGGC-ATGAGTGACTATAAATGAACTTTT
* * * *
4329434 CTTCTCAATGGATGGCTATCGCATCACGTTTCTTGAGGTGAATATTCAATTATAATCTATTTTAA
384 CTTCTCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTCAATTATAATCTGTTTTAA
* * *
4329499 GCAAAAA-GTAAAAAAATTC-ACTTAAAATC-ATTAGGAGATTATAAAACTATTTAAAGCAAGTA
449 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTA
* ** * * * *
4329561 ATAAGACTTACGAAGGTATAAGTGACAATAAATGGGCTTTTCTTAG-CAATGGATGGCTTTTGCT
514 ATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATGGC-TTTGCT
* * ** *
4329625 ACACGCTTCCCATGGCAAACATTCAATTATAATCTGTTTTAAAGAAAAATGTAAAAAATTTCAAC
577 TCACG-TTTCCA-GGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAC
* * *
4329690 TTAAAATGAATTATTAGATTGTGAAACCATTTAAAGCGAGT
640 TTAAAAT-AATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * *
4329731 AATAAGACTTTCGAAAGCTTGAGTGACTATAAATGAACTTTTCTTGTCAACGCATGACTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * * *
4329796 TCACGTTTCCCAAGGTAAACAATCAATTATAATCTATTTTAACAAAAATGTAAAAAAATTCAACT
66 TCACGTTT-CTAAGGCAAACATTCTATTATAATCTGTTTTAACCAAAATGTAAAAAAATTCAACT
* *
4329861 TAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCTTTCGAAGGTATGAGTG
130 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTG
*
4329926 ACTATAAATGAACTTTTC-TCATCAATGGATGGCTTTCCCTTCATGTTTCCCAAGGTAAACATTC
195 ACTATAAATGAACTTTTCTTCATCAATGGATGGCTTTCCCTTCATGTTTCCCAAGGCAAACATTC
** * * * *
4329990 AATTATAATCTGCCTTAACCAAAAATGTGAAAAAATTCAACTTAAAATAAATTATAAGATTCTAA
260 AATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAA
* * * *
4330055 AACCATTTAAAG-TCAGTAATAAGACTTTCAAAGGAATGAGGGACTATAAATGAACTTTTCTTCT
325 AACCATTTAAAGCT-AGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * * * * *** * * *
4330119 CATTGGATGGCTTTTGCTTTATGTTGCCCAAAGAAAATATTCAATTATAACCTGTTTTAACCAAA
389 CAATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTCAATTATAATCTGTTTTAACCAAA
** * *
4330184 AATGTAAAAACAATTCAACTTAAAATTGATAATGAAATTATAAAACCATTTAAAGCAAGTAATAA
454 AATGTAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAA
* * ** *
4330249 GGCTTTTGAAGGCCTGAGTGACAATAAATGGAC-TTTCTTGGGAATGGATGGCTTTAGCTTCATG
518 GGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT-GCTTCACG
* * * *
4330313 TTTCTCATGGCAAACATTCAATTATAATCTGTTATAACTAAAAATGTTAAAAAAAGTCAACTTCA
582 TTTC-CA-GGCAAACATTCAATTATAATCTGTTTTAACCAAAAATG-TAAAAAAATTCAACTTAA
4330378 AATAGATTATGAGATTATAAAACCATTTAAAGCGAGT
644 AATA-ATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * **
4330415 AATATGGTTTTCGAAGGCATAAGTGACTATAAATGCA-TATTTCTTCCCAAT-GATGGCTTTTGC
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTTCTTGTCAATGGATGGCTTTTGC
* * * * * *
4330478 TTCGCGTTTCATGAGGCAAATATTCTCTTATAATCTGTTTTAACCAAGATGTAAAAGAATTCAAC
65 TTCACGTTTC-TAAGGCAAACATTCTATTATAATCTGTTTTAACCAAAATGTAAAAAAATTCAAC
* ** * *
4330543 TTAAAATCAATTACGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATAAGT
129 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGT
* * * * * * *
4330608 AACTATAAATGGACTTTTCTT-GTTAGTGGATGAGC-TTCCCTTCACGTTTCTCAA-GCTAAACA
194 GACTATAAATGAACTTTTCTTCATCAATGGATG-GCTTTCCCTTCATGTTTCCCAAGGC-AAACA
* * * * *
4330670 TTCAATTATAATTTGTTTTAACAAAAAATGTAAAAACATTCAACTTAAAATCAATTAGGAGGTTA
257 TTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTA
* * * * * *
4330735 TAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAGGCATGAGTGATTACAAATGGACTTTTCTT
322 TAAAACCATTTAAAGCTAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT
* * ** * * *
4330800 GTCAATAGATGGCTTTCATTTCATGTTTCTTGAGGTAAACA-TCTAATTATAATCTGTTTTAACA
387 CTCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTC-AATTATAATCTGTTTTAACC
* ** **
4330864 AAAAATGCAAAATCATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
451 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAAT
* * * * *
4330929 AAGACTTTTGAAGCCATGAGTTACTATAAATGAACTTTTCTTCTCAATGGATGGCTTT-C--C-C
516 AAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGCTTCAC
* * ** *
4330990 G-----AGGCAAACA-TCTAACTATCATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAA
581 GTTTCCAGGCAAACATTC-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAA
* *
4331049 ATAAATTATGAGATTATAAAACCATTTAACGCAAGT
645 AT-AATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
4331085 AATAAAGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCATTGGATGGCTTTTGCT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * * *
4331150 TCATGTTCCCCAAAGCAAATATT-TAATTATAAGT-TGTTTTAACCAAAAAGGTAAAAAAATTCA
66 TCACGTT-TCTAAGGCAAACATTCT-ATTATAA-TCTGTTTTAACC-AAAATGTAAAAAAATTCA
** * *
4331213 ACTTAAAATCGAA-TATGAGATTATAAAACCATTTAAAGTGACCAATAAGGCTTTCGAAGGCCTA
127 ACTTAAAATC-AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATG
* * * * ** * * * *
4331277 AGTGACAATAAATGGACTTTTCTTGA-GAATGGATGGCTTTAGCTTCTTGTTTCTCATGGCAGAC
191 AGTGACTATAAATGAACTTTTCTTCATCAATGGATGGCTTTCCCTTCATGTTTCCCAAGGCAAAC
* *
4331341 ATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATAAATTATGAGAT
256 ATTCAATTATAATCTGTTTTAACAAAAAATGT-AAAAAAATTCAACTTAAAATAAATTATGAGAT
* * *
4331406 TATAAAACCATTTAAAGCTAGTAATATGGCTTTCGAAGGTATAAGTGACTATAAATGAA-TATTT
320 TATAAAACCATTTAAAGCTAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTT
* * * * ** *
4331470 CTTCCCAAT-GACGGCTTTCGCTTCACGTTTCATGAGGCAAATATTCTCTCATAATCTGTTTTAA
384 CTTCTCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTCAATTATAATCTGTTTTAA
* * * * *
4331534 TC-AAAATGAAAAAAAATTCAATTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCGAGTA
449 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTA
* **
4331598 ATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAGTGGATGGGCTTCCCTT
514 ATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTGCTT
* *
4331663 CACGTTTCCGGAGCCAAACATTCAATTATAATCTGTTTTAACCAAAAATTTAAAAAAAATT-AAC
578 CACGTTTCC--AGGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTCAAC
* *
4331727 TTAAAATCAATTATAAGGTTATAAAACCATTTAAAGCGAGT
640 TTAAAAT-AATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * **
4331768 AATAAGGCTTTGGAAGGCATGAGTGATTACAAATGAACTTTTCTTGTCAATGGATGGCTTTCACT
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * * *
4331833 TCATGTTTCTCGAGGTAAACA-TCTAATTATAATCTGTTTTAACAAAAAATGCAAAAACATTCAA
66 TCACGTTTCT-AAGGCAAACATTCT-ATTATAATCTGTTTTAAC-CAAAATGTAAAAAAATTCAA
* * ** ** *
4331897 CTTAAAATCAATTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGACTTTTAAAACCATGAA
128 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAG
* **
4331962 TGACTATAAATAAACTTTTCAAC-TCAATGGATGGCTTT-CC--C--G-------AGGCAAACA-
193 TGACTATAAATGAACTTTTCTTCATCAATGGATGGCTTTCCCTTCATGTTTCCCAAGGCAAACAT
* * * *
4332013 TCTAACTATCATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATAAATTATGAGATTA
258 TC-AATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTA
* * *
4332078 TATAACCATTTAAAGCTAGTAATAAGGCTTTCGAGGGCATGAGTGACTATAAATGAAATTTTCTT
322 TAAAACCATTTAAAGCTAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT
* ** * * *
4332143 CTCAATGGATGGCTTTCGCTCCACGTTTCCAGAGGTAAACATTCAGTTATAATCTCTTTTAACCA
387 CTCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTCAATTATAATCTGTTTTAACCA
** * * * *
4332208 AAAGGGTAAAAAAATTCAATTTAAAATCAATTATCAGATTATAAAATCATTTTAAA-CAGGTAAT
452 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGCAAGTAAT
* * * * * * *
4332272 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAAATTTTTTTTTCAATGCATGACTTCTGCTTCA
516 AAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TGCTTCA
* * * * * *
4332337 CATTGCCCAAGGTAAACAATCACTTATAGTCTGTTTTAACCAAAAATGT--AAAAA---AA--TA
580 CGTT-TCC-AGGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTA
* ** *
4332395 AAATCAATTATGAGATCATAAAACCATTTGGAGGGAGT
643 AAAT-AATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * * *
4332433 AATTAGCCTTTCAAAGGAATGAGTGACTACAAATTAACTTTTGTTGTCAATGGATGGCTTTCGCA
1 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * *
4332498 TCACGTTTCTCAAGGCAAACATTCAATTATATTCTGTTTTAACAACAAATGTAAAAAAGAATCAA
66 TCACGTTTCT-AAGGCAAACATTCTATTATAATCTGTTTTAACCA-AAATGTAAAAAA-ATTCAA
* * *
4332563 CCTAAAATCAATTATGAGATTATAAAACCATTTTAAAGTGAGTAATAAGGCTTTTGAAGGTATGA
128 CTTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGA
* * * * *
4332628 GTGACTATAAATGAACTTTCCATC-TCAATGGATGCCTTTCGCTTCATGTTTCCCGAGGCAAACA
192 GTGACTATAAATGAACTTTTCTTCATCAATGGATGGCTTTCCCTTCATGTTTCCCAAGGCAAACA
* * *
4332692 -TCTAACTATCATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAGTAAATTATGAGATT
257 TTC-AATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATT
*
4332756 ATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
321 ATAAAACCATTTAAAGCTAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * * * * *
4332821 TCTCCATGGATAGCTTTTGCTTTACGTTTCTGGAGGTAAATATTCAATTGTAATCTCTTTTAACC
386 TCTCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTCAATTATAATCTGTTTTAACC
*
4332886 AAAAAGGTAAAAAAATT
451 AAAAATGTAAAAAAATT
4332903 ATGTGATATC
Statistics
Matches: 2654, Mismatches: 435, Indels: 167
0.82 0.13 0.05
Matches are distributed among these distances:
664 2 0.00
665 134 0.05
666 35 0.01
667 65 0.02
668 1 0.00
669 5 0.00
670 193 0.07
671 261 0.10
672 332 0.13
673 103 0.04
675 1 0.00
676 2 0.00
678 7 0.00
679 417 0.16
680 109 0.04
681 57 0.02
682 96 0.04
683 675 0.25
684 159 0.06
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (679 bp):
AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCT
TCACGTTTCTAAGGCAAACATTCTATTATAATCTGTTTTAACCAAAATGTAAAAAAATTCAACTT
AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGA
CTATAAATGAACTTTTCTTCATCAATGGATGGCTTTCCCTTCATGTTTCCCAAGGCAAACATTCA
ATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAA
ACCATTTAAAGCTAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCA
ATGGATGGCTTTCGCTTCACGTTTCTTGAGGTAAATATTCAATTATAATCTGTTTTAACCAAAAA
TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
TTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGCTTCACGTTTC
CAGGCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATAATT
ATGAGATTATAAAACCATTTAAAGCGAGT
Found at i:4333881 original size:14 final size:14
Alignment explanation
Indices: 4333862--4333891 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4333852 AGCAGCCAAG
4333862 AGAAAGGAAAAAAA
1 AGAAAGGAAAAAAA
*
4333876 AGAAAGGAGAAAAA
1 AGAAAGGAAAAAAA
4333890 AG
1 AG
4333892 GCGAACGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (14 bp):
AGAAAGGAAAAAAA
Found at i:4334181 original size:33 final size:33
Alignment explanation
Indices: 4334119--4334228 Score: 125
Period size: 33 Copynumber: 3.2 Consensus size: 33
4334109 TATAGCTTTG
*
4334119 GCTGCTGATTTTTGAAGAGAAAATAGAGCAGCTTA
1 GCTGCTGA-TTTTGAGGAG-AAATAGAGCAGCTTA
4334154 GCTGCTGATTTTGAGGAGAAATAGAGCAGCTTA
1 GCTGCTGATTTTGAGGAGAAATAGAGCAGCTTA
* * *
4334187 ACTACTGATTTTG-GTGTAGATAT-GAGCAGCTCTA
1 GCTGCTGATTTTGAG-G-AGAAATAGAGCAGCT-TA
4334221 GCTGCTGA
1 GCTGCTGA
4334229 AAATTTCTTG
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
32 1 0.02
33 35 0.53
34 22 0.33
35 8 0.12
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (33 bp):
GCTGCTGATTTTGAGGAGAAATAGAGCAGCTTA
Found at i:4334390 original size:5 final size:5
Alignment explanation
Indices: 4334359--4334432 Score: 94
Period size: 5 Copynumber: 14.2 Consensus size: 5
4334349 TCAGCTGGAG
* *
4334359 AGAAA AGGAAG AGAAA GAGAGAA AGAAA AGAAA AGATA AGAAA AGAAA
1 AGAAA A-GAAA AGAAA -AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA
*
4334407 AGAAA AGAAG AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
4334433 ATATATATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
5 48 0.80
6 10 0.17
7 2 0.03
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.01
Consensus pattern (5 bp):
AGAAA
Found at i:4334507 original size:25 final size:25
Alignment explanation
Indices: 4334453--4334509 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
4334443 ATATGCATAT
*
4334453 AAATGGACATGGCCCAATAAGGAAAG
1 AAATGGGCATGGCCCAATAA-GAAAG
4334479 -AATGGGCATGGCCCAATTAA-AAAG
1 AAATGGGCATGGCCCAA-TAAGAAAG
4334503 AAATGGG
1 AAATGGG
4334510 AGAAGTCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.14
25 21 0.75
26 3 0.11
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (25 bp):
AAATGGGCATGGCCCAATAAGAAAG
Found at i:4338189 original size:19 final size:19
Alignment explanation
Indices: 4338165--4338202 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4338155 CTGCCAAACC
*
4338165 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
4338184 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
4338203 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:4339912 original size:19 final size:19
Alignment explanation
Indices: 4339888--4339925 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4339878 CCATTTGACT
4339888 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
4339907 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
4339926 GTTTAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:4343609 original size:171 final size:171
Alignment explanation
Indices: 4342864--4349467 Score: 7000
Period size: 171 Copynumber: 38.7 Consensus size: 171
4342854 GGGTCATGAC
* * * * *
4342864 AATTCTACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * ** * * * * * *
4342929 GCGTAAGTGAGAATAAATAAACTTTTCTTGGCAATGGATGACTTTCGCTTTATTTTTCC-ATGGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
*
4342993 AAACATTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAATGT--AAAAA
* * * * * * * * *
4343036 AATTCAACTTTAAATCAATTATCAGATTAAAAAACAAGTTAAAGTGAGTAATAAAGCTTCCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * *
4343101 GCATGAGTGACTATAAATGAGCATTTCTTGTCAATGCATGGCTTTTGCTTCACGTTTCCCAAGGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * *
4343166 AAACAATCAATTATAATCTATTTTAACAAAAAATGTAAAAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAATGT---AAAAA
* * * * *
4343210 AATTCAACTTAAAATCACTTATGAGATCATAAAACCATTTAAAGCAAGTAATAAGCCTTTTGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * ** *
4343275 GAATGAGTAACTATAAATTG-ACTTTTCTTGTCAATGGATGGTTTTCGCATCACATATCCTAAGG
66 GCATGAGTGACTATAAA-TGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* * * * *
4343339 TAAATATTCAATTATAATCTATATTAGCTAAAAATGTAAAAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGT--AAAAA
* * * * * *
4343383 AATTCAACCTAAAATTAATTATGAGATTGTAAAACCATTTAAAGCGAATAATAAGGCTCTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* ** * * * * *
4343448 GCATGAGTGACTATAAATGAACTTTTCTTCTCAATATATGGCTTTTGCTTCACGTTTCCCAAAGA
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * * * * *
4343513 AAATATTCAATTACAACCTGTTTTAACCGAAAAGGCAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * * *
4343554 AATTCAACTTAAAATCAAGTATGAGATTGTAATACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* *
4343619 GCATGAGTGACTATAAATTG-ACTTTTCTTGTTAATGGATGGCTTTCGCTTCATG-TTCCTTGAG
66 GCATGAGTGACTATAAA-TGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCC-TAAG
*
4343682 GTAAACAATT-AATTATAATATGTTTTAACCAAAAATGTAAAAA
129 GTAAAC-ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * * * ***
4343725 TATTCAACTTAAAATCAATTATGAGATTGTAAAACCATTCAAAACGAGTAATAAGGCTTGAAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * ** *
4343790 GTATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTTTGTTT-CTCGAGG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGG
* *
4343854 TAAACATTCAATTATAATCTGTTTTAACGAAAAAGGTAAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * * * *
4343896 AATTTAACTTGAAATCAATTATGATATTATAATACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * *
4343961 CCATGAGT-ACTATAAACGAACTTTTCTTCTCAATGGATGGCTTTC-ATATCACGTTT-CTCGAG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCT-TCATGTTTCCT-AAG
* * *
4344023 GTAAATATTCAATTATAATTTGTTTTAACCAAAAATGTGAAAA
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* *
4344066 AATTC-ACTTAAAATCAATTAAGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * *
4344130 GCATAAGTGACAATAAAT-AGACTTTTCTTGGCAATGGATGTCTTTCG-TTCATGTCTCCCATGG
66 GCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* *
4344193 TAAAGATTCAATTATAATCTGTTTTGACCAAAAATGTAAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* *
4344235 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATGAGG-TTTACGAA
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-CGAA
* * * * * *
4344299 GCCATGAGTCACTATAAATGAACTTTTCTTCTCAATTGATGGCTTTCGCATCATGCTTCCTAAGG
65 GGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* * * * *
4344364 TAAAAATTCAATTTTAATTTGTTTTAAACAAAAATGTAAAAC
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * *
4344406 AATT-AAGCTTAAAATCAATTATGAGATCATAAAACCATTTAAAGCGAGTAATAAGCCTTTTGAA
1 AATTCAA-CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * **
4344470 GGAATGAGTGACTATAAATCG-ACTTTTCTTGCCAATGGATGGCTTTCGGATCATGTTTCCTAAG
65 GGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAG
**
4344534 GTAAACATTCAATTATAATCTGTTTTAAATAAAAATGTAAAACA
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAA-A
* * * *
4344578 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAGGTGAGTAATAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * * *
4344643 GTATGAGTGACTATAAATGAACATTTCTTCTCAATGCATGGCTTTTGCTTCATGTTTCCCAAAGC
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * *
4344708 AAATATTCAATTATAA-CTTGTTTTAACTAAAAAGGTAAAAA
131 AAACATTCAATTATAATC-TGTTTTAACCAAAAATGTAAAAA
* *
4344749 AATTCAACTTAAAATCGATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTAT-GAA
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT-TCGAA
* * * * *
4344813 GCCATG-GTGACTATAAATAAACTTTTCTTCTCAATGGATGGCTTTTGCATCATGTTTCCTAAGG
65 GGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* * * **
4344877 TAAATATTCAATTATAATCTATTTTTAGAAAAAATGTAAAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAA
* * * * *
4344920 AATTCAACTTAAAATCAATTATAAGGTTATAAAACCATGTAATGTGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* ** * * * * * * ** *
4344985 GCATGAGTGACTATAAATGGACGATTCTTCTCAACGCATGGCTTACACTTCACGTTTTGTTAGGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * *
4345050 AAACATTCAATAATAATCTATTTTAA-TAAAATATGTAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAA-ATGTAAAAA
* * * **
4345091 AATTCAACTTAAAATCAATTATGAGATTATAAACCCATTTAAAGCTAGTATTAAGGCTCCCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4345156 GCATGAGTGACTCTAAAT-AGACTTTTCTTGTCAATGGATGACTTTTGCCTCATGTTTCTTGAA-
66 GCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAG
* * *
4345219 GCAAACATTCGATTATAATCTATTTTAACC-AAAA--TAAAAA
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * * *
4345259 AATTCAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAGTGAGTATTAAGGCTTCCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * *
4345324 GCATGAGTGACTATAAACGGACTTTTCTTGTCAATGGATGGCTTTCACCTCACAT-TTTCC-AAG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTC-GCT-TCATGTTTCCTAAG
* *
4345387 GCAAACATTCGATTATAA-CTTGTTTTAACCAAAAAATGTAAAAAAA
129 GTAAACATTCAATTATAATC-TGTTTTAACC-AAAAATGT--AAAAA
* * * * *
4345433 AATTCAACTTAAAAAT-AATTATAATATTATAAAACCATTCAAAGCGAGAAATAAGGCTTCCGAA
1 AATTCAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * * *
4345497 GGCATGAGTGACAATAAATGAACTTTTCTTCTCAATGGATGGCTTTCACTTCACGTTTCATGAGG
65 GGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* * * *
4345562 TAAACATTCAAATATAATTTGTTTTAACCAAAAAGGTGAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
*
4345604 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGCGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * ** * *
4345669 GCATGAGTGACTTTAAATAAACTTTTCTTCTTAATGGATACCTTTCGCCTCATGTTTCCCAAGGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * * * *
4345734 GAACGTTCAATTACAATATGTTTTAACCGAAAATGTAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * * * *
4345775 AATTGAACTGAAAATTAATTATGAGCTTATAAAACCATTTAAAGCGAGTAATACGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4345840 GCATGAATGACTATAAATGGAA-TTTTCTTGTAAATAGATGTCTTTCGCTTTATGTTT-CTGAAG
66 GCATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAG
* *
4345903 GAAAACATTCAATTATAATCTGTTTTAACCAAAAAATATAAAAA
129 GTAAACATTCAATTATAATCTGTTTTAACC-AAAAATGTAAAAA
* * * * * *
4345947 AGTTTAATTTAAAATCATTTATGAGATTATAAAACCATTTAGAGCGAGTAATAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * *
4346012 GCATGAGTGACTACAAATGGACTTTTCTTGTCAGTGGATGAG-TTTCCCTTCACGTTTCCCAAGG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATG-GCTTTCGCTTCATGTTTCCTAAGG
** * * *
4346076 TAAATGTTCAATTATAATCTATTTTAACTAAAAAATTGAAAAAAA
130 TAAACATTCAATTATAATCTGTTTTAAC-CAAAAA-TG-TAAAAA
* * * *
4346121 AAATCAACTTAAAATCAATTATAAGATTATAAAACCATTTATAGCGAGTAATAAGACTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * * * * * *
4346186 GCATAAGTGTCTCTAAATGGACTTTTCTTATCAATAGATGACATTCGCATCATGTTTTCTGAGGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * **
4346251 AAATATTCAATTATAATATGTTTTAACCAAAAAAATAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* *
4346292 AATTCAACTTAAAATCAATTATGAGATTATAAAGCCATTTAAAGCAAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
** ** * * * ** *
4346357 GCAAAAGCAACTACAAATGGACTTTT-TGTGTCAATGGATGGCTTTCGCTTTATGTTTATTGAGG
66 GCATGAGTGACTATAAATGAACTTTTCT-TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* * *
4346421 TAAACAATCAATTATAATCTGTTTTAACCAAAAAAGTCAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * * ** *
4346463 AATTTAACCTAAAATAAATTATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4346528 TCACGAGTGACTACAAATGAACTTTTCTTCTCAATGGATGGCTTTCGTTTCATGTTT-CTCAAGG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGG
4346592 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAA
* * * *
4346635 AATT-AGCTTAAAATCAATTATGAGATTATAAAACCATTTATAGCGAGCAATAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * * * * *
4346699 GCATGGGTGAATTTAAATAAACTTTTCTTGTCAATGGATGGTTTTTGCCTCACGTTTCCTAAAGC
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * * *
4346764 AAACATGCAATTATAATATGTTTTAACGAAAAAATGTAAGAA
131 AAACATTCAATTATAATCTGTTTTAAC-CAAAAATGTAAAAA
* * * *
4346806 AATTCAACTTAAAATCAAATATGAGGTTTTAAAGCCATTTAAAGCGAGTAATAAGGCCTTT-GAA
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG-CTTTCGAA
* * * * * *
4346870 GG-ATAAGTGACTATAAATGGACTTTTCTTGTCAATGAATGCCTTTCACTTCATGTTTCCCAAGG
65 GGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* *
4346934 CAAACATTTAATTATAAT-TAGTTTTAACCAAAAAATGTAAAAA
130 TAAACATTCAATTATAATCT-GTTTTAACC-AAAAATGTAAAAA
* * *
4346977 AATACAACTTAAAATCAATTATAAGATTATAAAACCATTCAAAGCGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * * * ** *
4347042 GTATGAGTAACTATAAGTGAACCTTTATTCTTAAAGGATGGCTTTTACTTCATGTTT-CTCGAGG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGG
* *
4347106 CAACCATTCAATTATAA-CTGTTTTAACCAAAAAATGTAAAAA
130 TAAACATTCAATTATAATCTGTTTTAACC-AAAAATGTAAAAA
** * * *
4347148 AATTCATGTTAAAATCAATTATGAGATTATAAAACCATTTAAGGCAAGTAATAAGGCTTTTGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * * *
4347213 GTATGAGTGACTACAAATGGACTTTTCATGTCAATGGATAGCTTTTGCTTCAAGTTTCCTAAGGC
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
*
4347278 AAACATTCAATTATAATCTGTTTTAACCAAAAATAAATAAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAAT--GTAAAAA
** * * *
4347321 AATTCAGTTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGATTAATAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * ** ** *
4347386 GTATGAGTGACCACAAATGGACTTTTCACGTCAATGGATCACTTTCGCTTCACT-TTTACTAAGG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCCTAAGG
* *
4347450 CAAACATTCAATTATAATCTGTTTTAACAAAAAAATGTAAAAA
130 TAAACATTCAATTATAATCTGTTTTAAC-CAAAAATGTAAAAA
* * * **
4347493 AATTCAACTCAAAATTAATTATGAGATTATAAAACCATTCAAAGTAAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4347558 GCATGAGTGACTATAAATGAACTTTTCTTCTTAATAGATGGCTTTCGCTTTATGTTTCCTGAGGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* *
4347623 AAACATTCAATTATAAGCT-TTTTAAACCAAAAATGAAAAAA
131 AAACATTCAATTATAATCTGTTTT-AACCAAAAATGTAAAAA
* * *
4347664 AATTCAACTTAAAAGCAATTATGAGATTATAAAACCATTTAAAGCGACTAATAAGGCTTTCAAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * *
4347729 GCATGATTGACTTTAAATAAACTTTTTTTTGTCAATGGATGGCTTTCGCCTCATGTTT-CTCGAG
66 GCATGAGTGACTATAAATGAAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAG
* * * * *
4347793 GAAAACATTCAATTAGAATATGTTTTAACCAAAAATGCAAGAA
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * ** * *
4347836 AATTGAACTTAAAATCAATTATGAGATTCTAAAACCATTTATTGCGAGTAATAAGGCTTTTGAAC
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * ** * *
4347901 GCATGAGTGACTATAAATGCATTTTTCTTGTCAATGGTTGCCTTTTGCTTCGCGTTTACTAAGGC
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* * * *
4347966 AAACATCCAATTATTAT-TAGTTTTAGCAAAAAACTG-ACAAAA
131 AAACATTCAATTATAATCT-GTTTTAACCAAAAA-TGTA-AAAA
* **
4348008 AGA-TCAACTTAAAAT-AATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCGA
1 A-ATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* * * ** *
4348071 AGGCATGAGTGACTACAAATGGACTTTT-TGTGTCAATGAATGGCTTTCGCTTCACATTTTCTAA
64 AGGCATGAGTGACTATAAATGAACTTTTCT-TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAA
* * *
4348135 GGCAAACATTCAATCATAATCTGTTTTAACCAAAAAATGTAAAAC
128 GGTAAACATTCAATTATAATCTGTTTTAACC-AAAAATGTAAAAA
*
4348180 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAACA-CGAGTAATAAGGGTTTCGAA
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCGAA
* * * *
4348244 GGCATGAGTGACTATAAATGGACTTTT-TATGTCAACGGATGGCTTTCGCTTCACGTTTCCTGAG
65 GGCATGAGTGACTATAAATGAACTTTTCT-TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAG
* * *
4348308 GCAAACATTCAATCATAATCTGTTTTAACCAAAAAATATAAAAAA
129 GTAAACATTCAATTATAATCTGTTTTAACC-AAAAATGT-AAAAA
* * * *
4348353 AATTCAACTTAAAATTAATTATGAGGTTATAAAACCATTTAAAGC-ATGTAACAAGACTTTC--A
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA-GTAATAAGGCTTTCGAA
* * * *
4348415 ---A--A--GAC-AT-GA-G-ACTTTTCTTGTCAATGGATGACATTT-GCTTCATGTGTCCCAAG
65 GGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCCTAAG
* * * *
4348468 GTCAACATTCAATTATAATTTTTTTTAGCCAAAAATGTAAAAAAA
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGT--AAAAA
* *
4348513 AATT-AACTTAAAAGT-AATTATGAGATTATAAAAGCATTTAAAGCGACTAATAAGGCTTTCGAA
1 AATTCAACTTAAAA-TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * * *
4348576 GGCTTGAGTGACTTTAAATAAACTTTTCTTGTCAATGGATGGTTTTCG-TCTCACGTTTCCCAAG
65 GGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCT-TCATGTTTCCTAAG
* * *
4348640 GCAAACATTCAATTATAA--TATATT---------T-T-----
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * ** * *
4348666 AATTGAACTTAAAATCAATTATGAGGTTATAAAATGATTTATAGTGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * *
4348731 GCATGAGTGACTAT-AATGGACTTTTTTTGCCAATAGATGCCTTTCGCTTCATGTTTCCCAAGGC
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
* ** **** ** *
4348795 AAACATCCAATTATTCTCAACATTAATGAAAATTG-AAAAA
131 AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
** * * * *
4348835 AATTCAACTTAAAAT-AATTTACAAGATTATTAAACTATTTAAAGTGAGTAATAAGGCTTTCAAA
1 AATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * *
4348899 GGCATGATTGACTACAAATGGACATTTT-GTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAG
65 GGCATGAGTGACTATAAATGAAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAG
* *
4348963 GCAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAA
129 GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* *
4349006 AATTCAACTTAAAATCAATAATGAGATTATAAAAGCATTTAAAGCGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4349071 GCATGAGTGACTATAAATGGACTTTTCTTCTCAATCGATGGCTTTCGCTTCACGTTTCCCT-ATG
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CCTAAGG
* *
4349135 CAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAA
130 TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
* * *
4349177 AATTCAACTTAAAATCAATAATGAGAGTATAAAAGCATTTAAAGCGAGTAATAAGGCTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4349242 GCATGAGTGACTATAAAT-AGACTTTTCATATCAATGGATGGCTTTCACTTCATGTTTCTTGAGG
66 GCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGG
* *
4349306 TAAACATTCAATTATAATCTATTTTATACAAAAAATGTAAAAA
130 TAAACATTCAATTATAATCTGTTTTA-ACCAAAAATGTAAAAA
* * * * * *
4349349 AATTTAACATAAAATTAATTATGAGATTATAAAACCATTTAAAGTGAATAATAAGGGTTTCGAAG
1 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * *
4349414 GCATGAGTGACTACAAATGGACTTTTCGTGTGAA-GGATGGCTTTCCCTTCATGT
66 GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGT
4349468 AATACCCCGT
Statistics
Matches: 5410, Mismatches: 868, Indels: 309
0.82 0.13 0.05
Matches are distributed among these distances:
153 58 0.01
154 65 0.01
155 4 0.00
159 54 0.01
160 68 0.01
161 7 0.00
162 1 0.00
163 2 0.00
164 4 0.00
166 2 0.00
167 3 0.00
168 139 0.03
169 186 0.03
170 398 0.07
171 2262 0.42
172 1326 0.25
173 417 0.08
174 407 0.08
175 7 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
GCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGT
AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA
Found at i:4350780 original size:15 final size:15
Alignment explanation
Indices: 4350757--4350802 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
4350747 ATAGCAAAGT
*
4350757 GAAAAGAGAAAGGAA
1 GAAAAGAGAAAGAAA
*
4350772 GAAAGGAGAAAGAAA
1 GAAAAGAGAAAGAAA
*
4350787 AAAAAGAGAAAGAAA
1 GAAAAGAGAAAGAAA
4350802 G
1 G
4350803 GTTCGGCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (15 bp):
GAAAAGAGAAAGAAA
Found at i:4356766 original size:171 final size:171
Alignment explanation
Indices: 4356124--4358951 Score: 3070
Period size: 171 Copynumber: 16.5 Consensus size: 171
4356114 GGTTCAACCT
* * * * *
4356124 AAAATGTAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAATCATTTACAGTGAGTAACA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * *
4356189 AGGCTTTCGAAAGCATAAGTGACTACAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCAT
66 AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * **
4356254 GTTTCTTGAGGCAAACGTTCAATTATAATCCATTTTAACCAA
131 GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* * * * **
4356296 AAAAT-TGGAAACAATTCAACTTAAAATCAATTATGAGCTTATAAAACCATTTATAGTAAGTAAT
1 AAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * ** * * *
4356360 AAGGCTTTCGAAGGCATAAGT-ACCGATAAATGGACTTTTCTTG-CAATTACATGACATTCGCGT
65 AAGGCTTTCGAAGGCATGAGTGA-CTATAAATGAACTTTTCTTGTCAA-TGGATGGCTTTCGCTT
* * *
4356423 CATGTTTCCTAAGGTAAACATTCAACTATAATCTGTTTTATCCAA
128 CATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTA-ACAA
* *
4356468 AAACAT-AAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAAT
1 AAA-ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * *
4356532 AAGGCTTTCGAAGGCTTGAATGAATGTAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCA
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * *
4356597 TCTTTCCTAAAGCAAACATTCAATTATAAACTGTTTTAACAA
130 TGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAA
* * *
4356639 AAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGGTTATAAAACCATTTAAATCAAGTAAT
1 AAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * *
4356704 AAGG-TTTCGAAGGCATGAGTGACTACAAATGGACTTTTCGTGTCAATGGATGGCTTTTGCTTCA
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * *
4356768 TGTTTCCAAAGGCAAACATTCAATTATAACCTTTTTTAACCAA
130 TGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* * * *
4356811 GAATTGTAAAAAAAATTCAACTTAAAATCAGTTATGAGATTATAAAACCATTTAAAGCAAGTAAT
1 AAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * **
4356876 ATGGCTTTCGAAGGCATGAGCGACTACAAATGAACTTTT-TGTGTCAATGGATGGCTTTTTCTTC
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT-TGTCAATGGATGGCTTTCGCTTC
* * * *
4356940 ACGTTTCC-AGAGGCAAAAATTCAATTATAATATGTTTTAACCA
129 ATGTTTCCTA-AGGCAAACATTCAATTATAATCTGTTTTAACAA
* * * * *
4356983 AAAATATAAAAAAAAATCAGCTTAAAATCAATTATGAGATTATAAAATCATTTATAGCGAGT-AT
1 AAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * *
4357047 AAGGCTTTCAAAGGCATGAGTGACTATCAATGAACATTTCTTCTCGATAGATGGCTTTTGCTTCA
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* *
4357112 TGTTTCCCAAGGCAAATATTCAATTATAATCT-TTTTAA-AA
130 TGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAA
* ** *
4357152 CAAAAGGTAAAAAAATTCAACTTAAAAAAAATTATGAGATTATAAAACCATTTAAAGCTAGTAAT
1 -AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
4357217 AAGGCTTTCGAAGCCATGAGTGACTTTAAATAAACTTGTT-TTATCAATGGATGGTTTTCGTTTC
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTT-TTCTTGTCAATGGATGGCTTTCGCTTC
** * *
4357281 ACATTT-CTCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
129 ATGTTTCCT-AAGGCAAACATTCAATTATAATCTGTTTTAACAA
* * * * * *
4357324 AAAAGGTAAAACAATTCAACTAAAAATCAATTATGAGATTTTAAAACCATTTATAGCAAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * * * * * *
4357389 AGGCTTTTGAAGGCAGGAATGACTTTCAATAAACTTTTCTTGTCAATGGATAGCTTTTGCCTCAC
66 AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * *
4357454 GTTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAACCAA
131 GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* ** ** *
4357496 AAACAT-AAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAGTATTTTCAGTGAGTAAT
1 AAA-ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * *
4357560 ATGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGGATAGCTTTCGCTTCA
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* *
4357625 TGTTT-CTCAAGGTAAACATTCAATTA-AATCTGTTTTAATC-G
130 TGTTTCCT-AAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* * * **
4357666 AAAACGTAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAAT
1 AAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
4357731 AAGGCTTTCGAAGGTATGAGTGACTACAAATGGACATTTCTTATCAATGGATGACTTTCGCTTCA
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * * *
4357796 TGTTTCCTGAGGTAAACATTTAATTATAATCCGTTTTAACCA
130 TGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAA
* * * *
4357838 AAAATGTAAAAAAATTCAACTTAAAAGCAATTATGAGATTATTAAACAATTTAAAGCGACTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * *
4357903 AGGCTTTTGAAGGCATGAGTGACCT-TAAATAAACTTTTCTTATCAATGGACGGCTTTCACCTC-
66 AGGCTTTCGAAGGCATGAGTGA-CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* *
4357966 TCGTTTCCTAAGGCAAACATTCAATTATAATCTATTTTAACCA
130 T-GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAA
* * * *
4358009 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGGTTATAGAACCATTTATAGCGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * ** * *
4358074 AGGCTTTTGAAGGCATGACTGACTACAAATGGTCTTTT-TGTGTCAATGGAT-GCTCTCTGTTTT
66 AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT-TGTCAATGGATGGCTTTC-G-CTT
* * * *
4358137 CATGTTTTCTGAGGCAAACATTCAATTATATTCTATTTTAACCAA
128 CATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* * * * * * * *
4358182 AAAATGCAAAACATTTTAACTTAAAATCAATTAAGAGATTATTAAACAATTTATAATC-AGTAAT
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAAT
* * * * ** * * *
4358246 AAGGCTTTCAAAGGCATGAGTGCCTATAAATGGACTTCTTTTTGTCAATACATGACATTCGCATC
65 AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTT-TTCTTGTCAATGGATGGCTTTCGCTTC
* *
4358311 ATGTTTCCTAAGGTAAACATACAATTATAATCTGTTTTAAGCAA
129 ATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* * * *
4358355 AAACA--TAAAAAAATTTAACTTAAAATCAATTATGATATTATAAAAGCATTTATAGCGAGTAAT
1 AAA-ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * **
4358418 AAGGCTTTTC-TAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGGAT--CTTTTTCTTC
65 AAGGC-TTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * *
4358480 ACGTTT-CTCGAGGTAAACATTCAATTATAAACTGTTTTAATC-A
129 ATGTTTCCT-AAGGCAAACATTCAATTATAATCTGTTTTAA-CAA
* * * * *
4358523 AAAAGGTAAAAAAATTCAACTCAAAATCAATTATGAGATTATAAAACCATTTATACCAAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
4358588 AGGCTTTCGAAGGTATGAGTGACTTTAAATAAACTTTTCTTGTCAATGGATAGCTTTCGCCTCAT
66 AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
4358653 GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACTAA
131 GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAAC-AA
** * *
4358695 AAACATAAAAAAGAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAGTTATAGCGAGTAA
1 AAA-ATGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * *
4358760 TAAGGCTTTTGAAGGCATGAGTGATTTTAAATAAACTTTTCTTGTCAATGGATGGCTTTCG-TCT
64 TAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCT-T
*
4358824 C-TCGTTTCCTAAGGCAAACATTCAAGTATAATCTGTTTTAACAA
128 CAT-GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAA
* * * * *
4358868 AAAATGGAAAAAAGTTCAACTTAAAATCAATTATAAGGTTTTAAAACCATTTAAAGCGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
*
4358933 AGACTTTCGAAGGCATGAG
66 AGGCTTTCGAAGGCATGAG
4358952 NNNNNNNNNN
Statistics
Matches: 2247, Mismatches: 350, Indels: 119
0.83 0.13 0.04
Matches are distributed among these distances:
167 1 0.00
168 10 0.00
169 183 0.08
170 105 0.05
171 822 0.37
172 728 0.32
173 234 0.10
174 160 0.07
175 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
GTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAA
Found at i:4357871 original size:514 final size:513
Alignment explanation
Indices: 4356131--4358951 Score: 3169
Period size: 514 Copynumber: 5.5 Consensus size: 513
4356121 CCTAAAATGT
* * * * *
4356131 AAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAATCATTTACAGTGAGTAACAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAATAAGGCTTT
* * * *
4356196 CGAAAGCATAAGTGACTACAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCATGTTTCTT
66 CGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCT
* * * * *
4356261 GAGGCAAACGTTCAATTATAATCCATTTTAACCAAAAAAT-TGGAAACAATTCAACTTAAAATCA
131 AAGGCAAACATTCAATTATAATCCGTTTTAACC-AAAAATGT-AAAAAAATTCAACTTAAAATCA
* * * * **
4356325 ATTATGAGCTTATAAAACCATTTATAGTAAGTAATAAGGCTTTCGAAGGCATAAGT-ACCGATAA
194 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGA-CTTTAA
* * * * * * * * *
4356389 ATGGACTTTTCTTG-CAAT-TACATGACATTCGCGTCATGTTTCCTAAGGTAAACATTCAACTAT
258 ATGAACTTTTCTTGTCAATGGATA-G-CTTTTGCCTCACGTTTCCTGAGGTAAACATTCAATTAT
*
4356452 AATCTGTTTTATCCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCA
321 AATCTGTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT-A
* * * * *
4356517 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAATGAATGTAAATGAACTTTTCTTGTCAATGG
385 TTTATAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGG
* * * * * *
4356582 ATGGCTTTTGCTTCATCTTTCCTAAAGCAAACATTCAATTATAAACTGTTTTAACAAAAAATGTA
450 ATAGCTTTCGCTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAAC-AAAAACGTA
* *
4356647 AAAAAAATTCAACTTAAAATCAATTATGAGGTTATAAAACCATTTA-AATCAAGTAATAAGG-TT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGT-AAGTAATAAGGCTT
* * *
4356710 TCGAAGGCATGAGTGACTACAAATGGACTTTTCGTGTCAATGGATGGCTTTTGCTTCATGTTTCC
65 TCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCC
* * *
4356775 AAAGGCAAACATTCAATTATAA-CCTTTTTTAACCAAGAATTGTAAAAAAAATTCAACTTAAAAT
130 TAAGGCAAACATTCAATTATAATCC-GTTTTAACCAA-AAATGT-AAAAAAATTCAACTTAAAAT
* * * **
4356839 CAGTTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCGAAGGCATGAGCGACTACA
192 CAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTTTA
* * * * * *
4356904 AATGAACTTTT-TGTGTCAATGGATGGCTTTTTCTTCACGTTTCCAGAGGCAAAAATTCAATTAT
257 AATGAACTTTTCT-TGTCAATGGATAGCTTTTGCCTCACGTTTCCTGAGGTAAACATTCAATTAT
* * * *
4356968 AATATGTTTTAACCAAAAATATAAAAAAAAATCAGCTTAAAATCAATTATGAGATTATAAAATCA
321 AATCTGTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT-A
* * * * * *
4357033 TTTATAGCGAGT-ATAAGGCTTTCAAAGGCATGAGTGACTATCAATGAACATTTCTTCTCGATAG
385 TTTATAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGG
* * * * * *
4357097 ATGGCTTTTGCTTCATGTTTCCCAAGGCAAATATTCAATTATAATCT-TTTTAAAACAAAAGGT-
450 ATAGCTTTCGCTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACA-AAAACGTA
** *
4357160 AAAAAAATTCAACTTAAAAAAAATTATGAGATTATAAAACCATTTAAAGCT-AGTAATAAGGCTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAG-TAAGTAATAAGGCTT
* ** ** * ** * **
4357224 TCGAAGCCATGAGTGACTTTAAATAAACTTGTT-TTATCAATGGATGGTTTTCGTTTCACATTT-
65 TCGAAGGCATGAGTGACTACAAATGGACTT-TTCTTGTCAATGGATGACTTTCGCTTCATGTTTC
* * * * *
4357287 CTCAAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAACAATTCAACTAAAAATC
129 CT-AAGGCAAACATTCAATTATAATCCGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATC
* * * * * *
4357352 AATTATGAGATTTTAAAACCATTTATAGCAAGTAATAAGGCTTTTGAAGGCAGGAATGACTTTCA
193 AATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTTTAA
* *
4357417 ATAAACTTTTCTTGTCAATGGATAGCTTTTGCCTCACGTTTTCTGAGGTAAACATTCAATTATAA
258 ATGAACTTTTCTTGTCAATGGATAGCTTTTGCCTCACGTTTCCTGAGGTAAACATTCAATTATAA
4357482 TCTGTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAGTATT
323 TCTGTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-TATT
* * * * *
4357547 T-TCAGTGAGTAATATGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGGA
387 TAT-AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGA
* *
4357611 TAGCTTTCGCTTCATGTTT-CTCAAGGTAAACATTCAATTA-AATCTGTTTTAATCGAAAACGTA
451 TAGCTTTCGCTTCATGTTTCCT-AAGGCAAACATTCAATTATAATCTGTTTTAA-CAAAAACGTA
*
4357674 AAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAATAAGGCTTT
* * *
4357739 CGAAGGTATGAGTGACTACAAATGGACATTTCTTATCAATGGATGACTTTCGCTTCATGTTTCCT
66 CGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCT
* * * *
4357804 GAGGTAAACATTTAATTATAATCCGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAAGCAAT
131 AAGGCAAACATTCAATTATAATCCGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
* * * * * * *
4357869 TATGAGATTATTAAACAATTTAAAGCGACTAATAAGGCTTTTGAAGGCATGAGTGACCTTAAATA
196 TATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTTTAAATG
* ** ** * * *
4357934 AACTTTTCTTATCAATGGACGGCTTTCACCTCTCGTTTCCTAAGGCAAACATTCAATTATAATCT
261 AACTTTTCTTGTCAATGGATAGCTTTTGCCTCACGTTTCCTGAGGTAAACATTCAATTATAATCT
* * * **
4357999 ATTTTAACCAAAAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGGTTATAGAACCATTTAT
326 GTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATA-AAATATTTAT
* * * **
4358063 AGCGAGTAATAAGGCTTTTGAAGGCATGACTGACTACAAATGGTCTTTT-TGTGTCAATGGAT-G
390 AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT-TGTCAATGGATAG
* * * * * * * *
4358126 CTCTCTGTTTTCATGTTTTCTGAGGCAAACATTCAATTATATTCTATTTTAACCAAAAA-ATGC
454 CTTTC-G-CTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAA-CAAAAACGT-A
* * * * * * * *
4358189 AAAACATTTTAACTTAAAATCAATTAAGAGATTATTAAACAATTTATAATCAGTAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAATAAGGCTTT
* * * * ** * *
4358254 CAAAGGCATGAGTGCCTATAAATGGACTTCTTTTTGTCAATACATGACATTCGCATCATGTTTCC
66 CGAAGGCATGAGTGACTACAAATGGACTT-TTCTTGTCAATGGATGACTTTCGCTTCATGTTTCC
* * * * ** *
4358319 TAAGGTAAACATACAATTATAATCTGTTTTAAGCAAAAACATAAAAAAATTTAACTTAAAATCAA
130 TAAGGCAAACATTCAATTATAATCCGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * * *
4358384 TTATGATATTATAAAAGCATTTATAGCGAGTAATAAGGCTTTTC-TAGGCATGAGTGACTATAAA
195 TTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC-TTTCGAAGGCATGAGTGACTTTAAA
* * * *
4358448 TGAACTTTTCTTCTTAATGGAT--CTTTTTCTTCACGTTT-CTCGAGGTAAACATTCAATTATAA
259 TGAACTTTTCTTGTCAATGGATAGCTTTTGCCTCACGTTTCCT-GAGGTAAACATTCAATTATAA
* * ** * *
4358510 ACTGTTTTAATCAAAAAGGT-AAAAAAATTCAACTCAAAATCAATTATGAGATTATAAAACCATT
323 TCTGTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-TATT
* * * * *
4358574 TATACCAAGTAATAAGGCTTTCGAAGGTATGAGTGACTTTAAATAAACTTTTCTTGTCAATGGAT
387 TATAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGAT
* *
4358639 AGCTTTCGCCTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACTAAAAACATAA
452 AGCTTTCGCTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAAC-AAAAACGT-A
* **
4358703 AAAAGAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAGTTATAGCGAGTAATAAGGCTT
1 AAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAATAAGGCTT
* * ** ** *
4358768 TTGAAGGCATGAGTGATTTTAAATAAACTTTTCTTGTCAATGGATGGCTTTCG-TCTC-TCGTTT
65 TCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCT-TCAT-GTTT
* * * * *
4358831 CCTAAGGCAAACATTCAAGTATAATCTGTTTTAACAAAAAATGGAAAAAAGTTCAACTTAAAATC
128 CCTAAGGCAAACATTCAATTATAATCCGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATC
* * * * *
4358896 AATTATAAGGTTTTAAAACCATTTAAAGCGAGTAATAAGACTTTCGAAGGCATGAG
193 AATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAG
4358952 NNNNNNNNNN
Statistics
Matches: 1948, Mismatches: 311, Indels: 94
0.83 0.13 0.04
Matches are distributed among these distances:
511 1 0.00
512 207 0.11
513 298 0.15
514 682 0.35
515 361 0.19
516 389 0.20
517 9 0.00
518 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (513 bp):
AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGTAAGTAATAAGGCTTT
CGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGTTTCCT
AAGGCAAACATTCAATTATAATCCGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
TATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTTTAAATG
AACTTTTCTTGTCAATGGATAGCTTTTGCCTCACGTTTCCTGAGGTAAACATTCAATTATAATCT
GTTTTAACCAAAAACATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATATTTATA
GCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATAGCT
TTCGCTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACAAAAACGTA
Found at i:4367792 original size:21 final size:22
Alignment explanation
Indices: 4367766--4367811 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
4367756 AAGAACCAAA
4367766 TTTACTCTT-AAA-TTTATAAAT
1 TTTACTCTTAAAACTTTA-AAAT
*
4367787 TTTACTTTTAAAACTTTAAAAT
1 TTTACTCTTAAAACTTTAAAAT
4367809 TTT
1 TTT
4367812 TTAATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 10 0.45
23 4 0.18
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTACTCTTAAAACTTTAAAAT
Found at i:4369271 original size:47 final size:47
Alignment explanation
Indices: 4369183--4369567 Score: 359
Period size: 47 Copynumber: 8.2 Consensus size: 47
4369173 AATTAATGAG
*
4369183 ACGCCATGGAGGGAATCTGTGACACG-CTAGAGTTAAAAGTTGGTGAC
1 ACGCCATGGAGGGAATCTGTGACACGTC-AGAGTTAAGAGTTGGTGAC
* * * * * *
4369230 ACACCATAGTGAGAATCTGTGACACGTCAGCA-TTTAGAGTTGGTGAG
1 ACGCCATGGAGGGAATCTGTGACACGTCAG-AGTTAAGAGTTGGTGAC
* * *
4369277 ATGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTAGTGAC
1 ACGCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGAC
* * * * * *
4369324 ATGCCATGGTGGGAATCTATGACACGTCAGCGTTTAGAGTTGGTGAG
1 ACGCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGAC
* * * *
4369371 ACGTCATAGAGGGAATCTGTGACACGCCAAAGTTAAGAGTTGGTGAC
1 ACGCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGAC
* * * * * ** *
4369418 ACGGCATGGAGAGAATTTGTGACACG-CTAGCGTTCAGAGTTCATGAGG
1 ACGCCATGGAGGGAATCTGTGACACGTC-AGAGTTAAGAGTTGGTGA-C
* *
4369466 A-GCCATGGAGGGAATCTGTGACACGTCAGAGTTCAGAATTGGTGAC
1 ACGCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGAC
* ** *
4369512 ACACCATGGAGAAAAAT-TGTGACACGCCAGAGTTCAA-AGTTGGTGAC
1 ACGCCATGGAG-GGAATCTGTGACACGTCAGAGTT-AAGAGTTGGTGAC
*
4369559 ATGCCATGG
1 ACGCCATGG
4369568 TCATAGTTTA
Statistics
Matches: 270, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
46 3 0.01
47 259 0.96
48 8 0.03
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (47 bp):
ACGCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGAC
Found at i:4369340 original size:94 final size:94
Alignment explanation
Indices: 4369179--4369567 Score: 451
Period size: 94 Copynumber: 4.1 Consensus size: 94
4369169 TAAGAATTAA
* * * *
4369179 TGAGACGCCATGGAGGGAATCTGTGACACGCTAGAGTTAAAAGTTGGTGACACACCATAGTGAGA
1 TGAGACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCATGGTGAGA
*
4369244 ATCTGTGACACGTCAGCATTTAGAGTTGG
66 ATCTGTGACACGTCAGCGTTTAGAGTTGG
* * * *
4369273 TGAGATGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTAGTGACATGCCATGGTGGGA
1 TGAGACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCATGGTGAGA
*
4369338 ATCTATGACACGTCAGCGTTTAGAGTTGG
66 ATCTGTGACACGTCAGCGTTTAGAGTTGG
* * * * *
4369367 TGAGACGTCATAGAGGGAATCTGTGACACGCCAAAGTTAAGAGTTGGTGACACGGCATGGAGAGA
1 TGAGACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCATGGTGAGA
* * **
4369432 ATTTGTGACACG-CTAGCGTTCAGAGTTCA
66 ATCTGTGACACGTC-AGCGTTTAGAGTTGG
* * * * *
4369461 TGAGGA-GCCATGGAGGGAATCTGTGACACGTCAGAGTTCAGAATTGGTGACACACCATGGAGAA
1 TGA-GACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCATGGTG-A
* * * * *
4369525 AAAT-TGTGACACGCCAGAGTTCAAAGTTGG
64 GAATCTGTGACACGTCAGCGTTTAGAGTTGG
* *
4369555 TGACATGCCATGG
1 TGAGACGCCATGG
4369568 TCATAGTTTA
Statistics
Matches: 252, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
93 2 0.01
94 243 0.96
95 7 0.03
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (94 bp):
TGAGACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCATGGTGAGA
ATCTGTGACACGTCAGCGTTTAGAGTTGG
Found at i:4369426 original size:141 final size:141
Alignment explanation
Indices: 4369185--4369567 Score: 418
Period size: 141 Copynumber: 2.7 Consensus size: 141
4369175 TTAATGAGAC
* *
4369185 GCCATGGAGGGAATCTGTGACACG-CTAGAGTTAAAAGTTGGTGACACACCATAGTGAGAATCTG
1 GCCATGGAGGGAATCTGTGACACGTC-AGAGTTAAGAGTTGGTGACACACCATAGAGAGAATCTG
* * * * * *
4369249 TGACACGTCAGCA-TTTAGAGTTGGTGAGATGCCATGGAGGGAATCTGTGACACGCCAGAGTTAA
65 TGACACGCCA-AAGTTAAGAGTTGGTGACACGCCATGGAGAGAATCTGTGACACGCCAGAGTTAA
4369313 GAGTT-AGTGA-CA
129 GAGTTCA-TGAGCA
* * * * * ** *
4369325 TGCCATGGTGGGAATCTATGACACGTCAGCGTTTAGAGTTGGTGAGACGTCATAGAGGGAATCTG
1 -GCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGACACACCATAGAGAGAATCTG
* * * * *
4369390 TGACACGCCAAAGTTAAGAGTTGGTGACACGGCATGGAGAGAATTTGTGACACGCTAGCGTTCAG
65 TGACACGCCAAAGTTAAGAGTTGGTGACACGCCATGGAGAGAATCTGTGACACGCCAGAGTTAAG
*
4369455 AGTTCATGAGGA
130 AGTTCATGAGCA
* * * *
4369467 GCCATGGAGGGAATCTGTGACACGTCAGAGTTCAGAATTGGTGACACACCATGGAGAAAAAT-TG
1 GCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGACACACCATAGAG-AGAATCTG
* *
4369531 TGACACGCCAGAGTTCAA-AGTTGGTGACATGCCATGG
65 TGACACGCCAAAGTT-AAGAGTTGGTGACACGCCATGG
4369568 TCATAGTTTA
Statistics
Matches: 200, Mismatches: 36, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
140 1 0.00
141 191 0.95
142 8 0.04
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (141 bp):
GCCATGGAGGGAATCTGTGACACGTCAGAGTTAAGAGTTGGTGACACACCATAGAGAGAATCTGT
GACACGCCAAAGTTAAGAGTTGGTGACACGCCATGGAGAGAATCTGTGACACGCCAGAGTTAAGA
GTTCATGAGCA
Found at i:4369618 original size:53 final size:53
Alignment explanation
Indices: 4369555--4369674 Score: 168
Period size: 53 Copynumber: 2.3 Consensus size: 53
4369545 TCAAAGTTGG
* *
4369555 TGACATGCCATGGTCATAGTTTAAAGTGTGTGACACGGCATTGCTTGAAAAGC
1 TGACACGCCATGGTCATAGTTTAAAGTGTGTGACACGGCAGTGCTTGAAAAGC
* * * *
4369608 TGACACGCCATGGTCATGGTTTAGAGTGTGTGACACTGCAGTGCTTGAACAGC
1 TGACACGCCATGGTCATAGTTTAAAGTGTGTGACACGGCAGTGCTTGAAAAGC
* *
4369661 GGACACGTCATGGT
1 TGACACGCCATGGT
4369675 TTGAAGTAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (53 bp):
TGACACGCCATGGTCATAGTTTAAAGTGTGTGACACGGCAGTGCTTGAAAAGC
Found at i:4370207 original size:31 final size:31
Alignment explanation
Indices: 4370169--4370385 Score: 299
Period size: 31 Copynumber: 7.0 Consensus size: 31
4370159 ATGATTTGAT
* *
4370169 TTGATATGCATAGCGTGTGACAACATTTTAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
** *
4370200 TTGATATGCATAACGTGTGACAACATTTTAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
* * * *
4370231 TTGATATGCATGGCCTGTGATAGCATTTTAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
*
4370262 TTGATATGCATGGTGTGTCACAACATTTTAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
* * *
4370293 TTGTTATGCATGGCGTGTCACAAGATTTAAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
*
4370324 TTGTTATGCATGGCGTGTCACAACATTTTAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
*
4370355 TTGATATGCATGGTGTGTCACAACATTTTAC
1 TTGATATGCATGGCGTGTCACAACATTTTAC
4370386 ACAACATTTT
Statistics
Matches: 167, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 167 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (31 bp):
TTGATATGCATGGCGTGTCACAACATTTTAC
Found at i:4370390 original size:12 final size:12
Alignment explanation
Indices: 4370373--4370397 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4370363 CATGGTGTGT
4370373 CACAACATTTTA
1 CACAACATTTTA
4370385 CACAACATTTTA
1 CACAACATTTTA
4370397 C
1 C
4370398 TTGTTATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (12 bp):
CACAACATTTTA
Found at i:4370406 original size:43 final size:43
Alignment explanation
Indices: 4370342--4370426 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
4370332 CATGGCGTGT
*
4370342 CACAACATTTTACTTGATATGCATGGTGTGTCACAACATTTTA
1 CACAACATTTTACTTGATATGCATGGCGTGTCACAACATTTTA
*
4370385 CACAACATTTTACTTGTTATGCATGGCGTGTCACAACATTTT
1 CACAACATTTTACTTGATATGCATGGCGTGTCACAACATTTT
4370427 GCTTGCTATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (43 bp):
CACAACATTTTACTTGATATGCATGGCGTGTCACAACATTTTA
Found at i:4370423 original size:31 final size:31
Alignment explanation
Indices: 4370385--4370456 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
4370375 CAACATTTTA
* *
4370385 CACAACATTTTACTTGTTATGCATGGCGTGT
1 CACAACATTTTACTTGCTATGCATAGCGTGT
*
4370416 CACAACATTTTGCTTGCTATGCATAGCGTGT
1 CACAACATTTTACTTGCTATGCATAGCGTGT
4370447 CACAACATTT
1 CACAACATTT
4370457 ATTCCTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (31 bp):
CACAACATTTTACTTGCTATGCATAGCGTGT
Found at i:4370437 original size:74 final size:74
Alignment explanation
Indices: 4370311--4370456 Score: 238
Period size: 74 Copynumber: 2.0 Consensus size: 74
4370301 CATGGCGTGT
* * *
4370311 CACAAGATTTAACTTGTTATGCATGGCGTGTCACAACATTTTACTTGATATGCATGGTGTGTCAC
1 CACAACATTTAACTTGTTATGCATGGCGTGTCACAACATTTTACTTGATATGCATAGCGTGTCAC
4370376 AACATTTTA
66 AACATTTTA
* * *
4370385 CACAACATTTTACTTGTTATGCATGGCGTGTCACAACATTTTGCTTGCTATGCATAGCGTGTCAC
1 CACAACATTTAACTTGTTATGCATGGCGTGTCACAACATTTTACTTGATATGCATAGCGTGTCAC
4370450 AACATTT
66 AACATTT
4370457 ATTCCTTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (74 bp):
CACAACATTTAACTTGTTATGCATGGCGTGTCACAACATTTTACTTGATATGCATAGCGTGTCAC
AACATTTTA
Found at i:4372366 original size:156 final size:156
Alignment explanation
Indices: 4372206--4372598 Score: 579
Period size: 156 Copynumber: 2.5 Consensus size: 156
4372196 CGCTAATAAA
*
4372206 GATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCATACATGATTATTGAATAACATAGTTAT
1 GATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCATACATGATTATTGAATAACACAGTTAT
* * * * *
4372271 TTATGTATTTACAGTTTACGGAAGCAATGATAGGTCCTTAAGCACCGATCGGTCCAGCTCCACCA
66 ATATGTAATTACAGTTTACGAAAGCAACGACAGGTCCTTAAGCACCGATCGGTCCAGCTCCACCA
4372336 CAGACTGCTAACGAGCCACCGGTAAG
131 CAGACTGCTAACGAGCCACCGGTAAG
*
4372362 GATATTAAAGTTGTAACGGTTAATGTTCAACAATTTCATACATGATTATTGAATAACACAGTTAT
1 GATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCATACATGATTATTGAATAACACAGTTAT
** ** ** * * *
4372427 ATATGTAATTGTAGTTTACGAAAGTGACGACAGGTTTTTAAGCACTGATCGGTCTAGCTCCACCG
66 ATATGTAATTACAGTTTACGAAAGCAACGACAGGTCCTTAAGCACCGATCGGTCCAGCTCCACCA
** *
4372492 CAGACTGCTAACGAGCCGTCGGTTAG
131 CAGACTGCTAACGAGCCACCGGTAAG
* *
4372518 GATATTAAAGTTGTAACAGTTAATGTTCAACGATTTCATATATGATTATTGAATAACACAGTTAT
1 GATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCATACATGATTATTGAATAACACAGTTAT
* *
4372583 ATATGTTATTGCAGTT
66 ATATGTAATTACAGTT
4372599 GACCTAATTG
Statistics
Matches: 213, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
156 213 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (156 bp):
GATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCATACATGATTATTGAATAACACAGTTAT
ATATGTAATTACAGTTTACGAAAGCAACGACAGGTCCTTAAGCACCGATCGGTCCAGCTCCACCA
CAGACTGCTAACGAGCCACCGGTAAG
Found at i:4373010 original size:31 final size:31
Alignment explanation
Indices: 4372969--4373226 Score: 257
Period size: 31 Copynumber: 8.3 Consensus size: 31
4372959 ACAATATTAG
* * *
4372969 ACTTGATATGCATGGCGTGTTAGAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* ** *
4373000 ACTTGTTATGCATGGTGTGTCACAATGTTTG
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * *
4373031 ATTTGATATGCATGGCGTGTCAAAACAATTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * *
4373062 GCTTGTTATCCTTGGCGTGTCACAACAATTTG
1 ACTTGTTATGCATGGCGTGTCACAAC-ATTTT
* * * *
4373094 A-TTGTTATGCATGGCATGCCACAACGTTTA
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
*
4373124 ACTTGTTATGCATGGCGTGTCATAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
*
4373155 ACTTGTTATGCATGGCATGTCACAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * * * *
4373186 ACTTGATATGCACGACATGTCATAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
*
4373217 ACTAGTTATG
1 ACTTGTTATG
4373227 GTTTGTGGTA
Statistics
Matches: 182, Mismatches: 43, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
30 4 0.02
31 175 0.96
32 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (31 bp):
ACTTGTTATGCATGGCGTGTCACAACATTTT
Found at i:4374899 original size:15 final size:15
Alignment explanation
Indices: 4374860--4374905 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
4374850 ATTCTTTCTG
4374860 TATACACAATATATTT
1 TATACACAAT-TATTT
*
4374876 T-T-TACAATTATTT
1 TATACACAATTATTT
4374889 TATACACAATTAATTT
1 TATACACAATT-ATTT
4374905 T
1 T
4374906 TTGCCTATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 6 0.24
14 6 0.24
15 7 0.28
16 6 0.24
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (15 bp):
TATACACAATTATTT
Found at i:4374900 original size:51 final size:48
Alignment explanation
Indices: 4374773--4374933 Score: 155
Period size: 51 Copynumber: 3.2 Consensus size: 48
4374763 AAAGAATTAC
* * * *
4374773 TTTTATACAATTAATTTTATACATAGT-ATTTTTTGTGTACACAATTTA
1 TTTTATACAATT-ATTTTATACAAATTAATTTTTTGTATACACAATATA
* *
4374821 TTTTATATAATTTATTATATACAGAATTAATTCTTTCTGTATACACAATATA
1 TTTTATACAA-TTATTTTATACA-AATTAATT-TTT-TGTATACACAATATA
*
4374873 TTTTTTACAATTATTTTATACACAATTAATTTTTTGCCTATACACAAT-TAA
1 TTTTATACAATTATTTTATACA-AATTAATTTTTTG--TATACACAATAT-A
*
4374924 TTTGATACAA
1 TTTTATACAA
4374934 AGAATTTTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
48 18 0.19
49 6 0.06
50 7 0.08
51 41 0.44
52 21 0.23
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (48 bp):
TTTTATACAATTATTTTATACAAATTAATTTTTTGTATACACAATATA
Found at i:4375158 original size:31 final size:31
Alignment explanation
Indices: 4375007--4375157 Score: 115
Period size: 31 Copynumber: 4.9 Consensus size: 31
4374997 GTGTGATGCT
*
4375007 ATAAATCTGCTACCACTTAACGTGTC-CCCAC
1 ATAAATCTGCTACCACTCAACGTGTCACCC-C
* ** *
4375038 ATACATCTGCTTGCACTCAGCGTGTCACCCC
1 ATAAATCTGCTACCACTCAACGTGTCACCCC
* * ** * *
4375069 ATATATCTGCAAGAAGTCAACGTGTCACACC
1 ATAAATCTGCTACCACTCAACGTGTCACCCC
* * * * * *
4375100 GTAAATCTACTAACACTCAACATGTCAGCCG
1 ATAAATCTGCTACCACTCAACGTGTCACCCC
* *
4375131 ATAAATCTGCTTCCACTCAGCGTGTCA
1 ATAAATCTGCTACCACTCAACGTGTCA
4375158 GAACAATTGG
Statistics
Matches: 90, Mismatches: 29, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
31 87 0.97
32 3 0.03
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (31 bp):
ATAAATCTGCTACCACTCAACGTGTCACCCC
Found at i:4375373 original size:21 final size:21
Alignment explanation
Indices: 4375327--4375377 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
4375317 CACTCAGCGG
* *
4375327 GTCACAACTGTGAAACAGCGT
1 GTCACGACTGTGAAACAGCAT
* *
4375348 CTCACGACTGTGAAATAGCAT
1 GTCACGACTGTGAAACAGCAT
4375369 GTCACGACT
1 GTCACGACT
4375378 CCGGTGGTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (21 bp):
GTCACGACTGTGAAACAGCAT
Found at i:4376057 original size:31 final size:31
Alignment explanation
Indices: 4376011--4376400 Score: 297
Period size: 31 Copynumber: 13.0 Consensus size: 31
4376001 TAGCGTGTGG
* * *
4376011 CAACATTTTCCTTGTTATGCATGGCGTGTTA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * *
4376042 GAACAATTTAATTGTTATGCATGGCATGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * *
4376073 CAAC-GTTTAACTTGTTATGCATTGAGTGT--
1 CAACAATTT-ACTTGTTATGCATGGCGTGTCA
* *
4376102 ------TTAACTTGTTATGCAT--AGTGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* *
4376125 GAACAATTTACTTGTTATGCATGGTGTGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * *
4376156 AAATAATTTAATTGTTATGCATGGCGTGT--
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* *
4376185 CAAC-GTTTAACTTGTTATGCATGGTGTGTCA
1 CAACAATTT-ACTTGTTATGCATGGCGTGTCA
* *
4376216 GAACAATTTACTTATTATGCATGGCGTGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * * *
4376247 GAACATTTTGCTTGTTATCCATGGCGTGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * * * **
4376278 AAATATTTTGCTTGTTATGCATAACGTGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * *
4376309 TAA-AATTTTACTGGTTATGCATGACGTGTCA
1 CAACAA-TTTACTTGTTATGCATGGCGTGTCA
* * *
4376340 CAATACTTTACTTGATATGCATGGCGTGTCA
1 CAACAATTTACTTGTTATGCATGGCGTGTCA
* * *
4376371 CAACATTTTACTTGTTTTGCATGGTGTGTC
1 CAACAATTTACTTGTTATGCATGGCGTGTC
4376401 TCACATTTAT
Statistics
Matches: 290, Mismatches: 52, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
21 5 0.02
23 13 0.04
24 2 0.01
28 3 0.01
29 35 0.12
30 4 0.01
31 224 0.77
32 4 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (31 bp):
CAACAATTTACTTGTTATGCATGGCGTGTCA
Found at i:4376296 original size:62 final size:62
Alignment explanation
Indices: 4376105--4376400 Score: 339
Period size: 62 Copynumber: 4.8 Consensus size: 62
4376095 TGAGTGTTTA
* *
4376105 ACTTGTTATGCAT--AGTGTCAGAACAATTTACTTGTTATGCATGGTGTGTCAAAATAATTT
1 ACTTGTTATGCATGGCGTGTCAGAACATTTTACTTGTTATGCATGGTGTGTCAAAATAATTT
* * * * *
4376165 AATTGTTATGCATGGCGTGTC--AACGTTTAACTTGTTATGCATGGTGTGTCAGAACAATTT
1 ACTTGTTATGCATGGCGTGTCAGAACATTTTACTTGTTATGCATGGTGTGTCAAAATAATTT
* * * * *
4376225 ACTTATTATGCATGGCGTGTCAGAACATTTTGCTTGTTATCCATGGCGTGTCAAAATATTTT
1 ACTTGTTATGCATGGCGTGTCAGAACATTTTACTTGTTATGCATGGTGTGTCAAAATAATTT
* ** * * * ** * *
4376287 GCTTGTTATGCATAACGTGTCATAAAATTTTACTGGTTATGCATGACGTGTCACAATACTTT
1 ACTTGTTATGCATGGCGTGTCAGAACATTTTACTTGTTATGCATGGTGTGTCAAAATAATTT
* * *
4376349 ACTTGATATGCATGGCGTGTCACAACATTTTACTTGTTTTGCATGGTGTGTC
1 ACTTGTTATGCATGGCGTGTCAGAACATTTTACTTGTTATGCATGGTGTGTC
4376401 TCACATTTAT
Statistics
Matches: 193, Mismatches: 39, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
60 65 0.34
62 128 0.66
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (62 bp):
ACTTGTTATGCATGGCGTGTCAGAACATTTTACTTGTTATGCATGGTGTGTCAAAATAATTT
Found at i:4376400 original size:93 final size:93
Alignment explanation
Indices: 4376105--4376400 Score: 332
Period size: 93 Copynumber: 3.2 Consensus size: 93
4376095 TGAGTGTTTA
* * *
4376105 ACTTGTTATGCAT--AGTGTCAGAACAATTTACTTGTTATGCATGGTGTGTCAAAATAATTTAAT
1 ACTTGTTATGCATGGTGTGTCAGAACAATTTACTTGTTATGCATGGCGTGTCAAAATAATTTACT
* *
4376168 TGTTATGCATGGCGTGT--CAACGTTTA
66 TGTTATGCATGGCGTGTCACAACATTTT
* * * * *
4376194 ACTTGTTATGCATGGTGTGTCAGAACAATTTACTTATTATGCATGGCGTGTCAGAACATTTTGCT
1 ACTTGTTATGCATGGTGTGTCAGAACAATTTACTTGTTATGCATGGCGTGTCAAAATAATTTACT
* * *
4376259 TGTTATCCATGGCGTGTCAAAATATTTT
66 TGTTATGCATGGCGTGTCACAACATTTT
* *** * * * * *
4376287 GCTTGTTATGCATAACGTGTCATAA-AATTTTACTGGTTATGCATGACGTGTCACAATACTTTAC
1 ACTTGTTATGCATGGTGTGTCAGAACAA-TTTACTTGTTATGCATGGCGTGTCAAAATAATTTAC
*
4376351 TTGATATGCATGGCGTGTCACAACATTTT
65 TTGTTATGCATGGCGTGTCACAACATTTT
*
4376380 ACTTGTTTTGCATGGTGTGTC
1 ACTTGTTATGCATGGTGTGTC
4376401 TCACATTTAT
Statistics
Matches: 168, Mismatches: 34, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
89 13 0.08
91 58 0.35
92 2 0.01
93 95 0.57
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (93 bp):
ACTTGTTATGCATGGTGTGTCAGAACAATTTACTTGTTATGCATGGCGTGTCAAAATAATTTACT
TGTTATGCATGGCGTGTCACAACATTTT
Found at i:4380978 original size:31 final size:31
Alignment explanation
Indices: 4380915--4380996 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
4380905 TTGTCAGTCG
*
4380915 TGTTGTTACACGCCATGCATATAACGTAAAA
1 TGTTGTAACACGCCATGCATATAACGTAAAA
* * *
4380946 TGTTGTAACAGGCTATGCATATCAA-GTCAAA
1 TGTTGTAACACGCCATGCATAT-AACGTAAAA
* * *
4380977 TGTCGTGACACTCCATGCAT
1 TGTTGTAACACGCCATGCAT
4380997 CAGTATCGTG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 39 0.95
32 2 0.05
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (31 bp):
TGTTGTAACACGCCATGCATATAACGTAAAA
Found at i:4381009 original size:23 final size:23
Alignment explanation
Indices: 4380977--4381083 Score: 169
Period size: 23 Copynumber: 4.7 Consensus size: 23
4380967 TCAAGTCAAA
* *
4380977 TGTCGTGACACTCCATGCATCAG
1 TGTCGTGACACACCATGCATCAC
* *
4381000 TATCGTGACACGCCATGCATCAC
1 TGTCGTGACACACCATGCATCAC
4381023 TGTCGTGACACACCATGCATCAC
1 TGTCGTGACACACCATGCATCAC
*
4381046 TGTCGTGACACACCATGCATCAT
1 TGTCGTGACACACCATGCATCAC
4381069 TGTCGTGACACACCA
1 TGTCGTGACACACCA
4381084 ATCACTGTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 78 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (23 bp):
TGTCGTGACACACCATGCATCAC
Found at i:4381314 original size:55 final size:55
Alignment explanation
Indices: 4381185--4381316 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
4381175 TAACACGTCC
* * * **
4381185 AAAACCCAAAAAACCAATTAACCCACGACAAGCCAAGAACAGCCGTGACACTCTA
1 AAAACCCAAAAAACTAGTTAACCCACGACAAGCCAAGAACAACCGTGACAAGCTA
* * *
4381240 AAAACCC-ATAAATTCAGTTAACCCATGACACA-CCAAGAACAACCGTGACAAGCTA
1 AAAACCCAAAAAACT-AGTTAACCCACGACA-AGCCAAGAACAACCGTGACAAGCTA
*
4381295 ACAACCCAAAAAACTAGTTAAC
1 AAAACCCAAAAAACTAGTTAAC
4381317 TCACAACACG
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
54 4 0.06
55 53 0.84
56 6 0.10
ACGTcount: A:0.48, C:0.30, G:0.10, T:0.12
Consensus pattern (55 bp):
AAAACCCAAAAAACTAGTTAACCCACGACAAGCCAAGAACAACCGTGACAAGCTA
Found at i:4383914 original size:19 final size:19
Alignment explanation
Indices: 4383886--4383922 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4383876 GTCCGCAATC
*
4383886 AAAGAATACAGAGTGGTCT
1 AAAGAATACAAAGTGGTCT
*
4383905 AAAGATTACAAAGTGGTC
1 AAAGAATACAAAGTGGTC
4383923 ATGGCACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (19 bp):
AAAGAATACAAAGTGGTCT
Found at i:4387342 original size:20 final size:20
Alignment explanation
Indices: 4387285--4387342 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
4387275 CTCTTGCAAA
*
4387285 AACATAAAAATAAACATAAAT
1 AACAT-AAAATAAACATTAAT
*
4387306 AACATAAAACT-AACATTATT
1 AACATAAAA-TAAACATTAAT
*
4387326 AACTTAAAATAAACATT
1 AACATAAAATAAACATT
4387343 TAAATATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 1 0.03
20 25 0.78
21 6 0.19
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.26
Consensus pattern (20 bp):
AACATAAAATAAACATTAAT
Found at i:4387811 original size:14 final size:14
Alignment explanation
Indices: 4387794--4387820 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4387784 CAAAATTAAT
4387794 TAATTAACTAAAAC
1 TAATTAACTAAAAC
4387808 TAATTAACTAAAA
1 TAATTAACTAAAA
4387821 TTAAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATTAACTAAAAC
Found at i:4392798 original size:16 final size:16
Alignment explanation
Indices: 4392777--4392809 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4392767 ACATATAATG
*
4392777 AAAGAATATGGAACTT
1 AAAGAATATGCAACTT
4392793 AAAGAATATGCAACTT
1 AAAGAATATGCAACTT
4392809 A
1 A
4392810 TTCCCTAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (16 bp):
AAAGAATATGCAACTT
Found at i:4393367 original size:21 final size:22
Alignment explanation
Indices: 4393321--4393361 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
4393311 CCTTTAATTT
* *
4393321 TAAAACAAATATTTAAATAATA
1 TAAAACAAAGATTTAAAGAATA
4393343 TAAAA-AAAGATTTAAAGAA
1 TAAAACAAAGATTTAAAGAA
4393362 AGTAAAGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (22 bp):
TAAAACAAAGATTTAAAGAATA
Found at i:4394758 original size:27 final size:27
Alignment explanation
Indices: 4394717--4394837 Score: 145
Period size: 27 Copynumber: 4.5 Consensus size: 27
4394707 GAACATCACA
* * *
4394717 TGTAACAACA-GTTTTTCAAGATGGTG
1 TGTAACAACATTTTTTTCAATATGGCG
* * *
4394743 TCTAACAACTTTTTTTTCAATATGACG
1 TGTAACAACATTTTTTTCAATATGGCG
*
4394770 TGTAACAACATTTTTTTCAATATGGTG
1 TGTAACAACATTTTTTTCAATATGGCG
* * *
4394797 TTTAACAACTTTTTTTTCAACATGGCG
1 TGTAACAACATTTTTTTCAATATGGCG
4394824 TGTAACAACATTTT
1 TGTAACAACATTTT
4394838 AGAACATGGC
Statistics
Matches: 78, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 8 0.10
27 70 0.90
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (27 bp):
TGTAACAACATTTTTTTCAATATGGCG
Found at i:4394795 original size:54 final size:54
Alignment explanation
Indices: 4394700--4394837 Score: 197
Period size: 54 Copynumber: 2.6 Consensus size: 54
4394690 TGTAGTAAAA
* * * *
4394700 TTTTTTTGAACATCACATGTAACAACA-GTTTTTCAAGATGGTGTCTAACAACT
1 TTTTTTTCAACATGACGTGTAACAACATTTTTTTCAAGATGGTGTCTAACAACT
* * *
4394753 TTTTTTTCAATATGACGTGTAACAACATTTTTTTCAATATGGTGTTTAACAACT
1 TTTTTTTCAACATGACGTGTAACAACATTTTTTTCAAGATGGTGTCTAACAACT
*
4394807 TTTTTTTCAACATGGCGTGTAACAACATTTT
1 TTTTTTTCAACATGACGTGTAACAACATTTT
4394838 AGAACATGGC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 23 0.31
54 52 0.69
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (54 bp):
TTTTTTTCAACATGACGTGTAACAACATTTTTTTCAAGATGGTGTCTAACAACT
Found at i:4399498 original size:42 final size:42
Alignment explanation
Indices: 4399438--4399603 Score: 206
Period size: 42 Copynumber: 4.0 Consensus size: 42
4399428 TGTTGATGTG
* *
4399438 GACCCGACTATGTGCGAGTAGAAGTGTACATAAGCCGTTGCT
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
*
4399480 GACCCGACTATGTACGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * * * *
4399522 GACCCGGCTATATGTGAGTGGGAGTGCACATAAGCCATTGCT
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * * * * *
4399564 GACCCGGCTATATGCGAGTGGGAGTACGCATAAGCAGTTG
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
4399604 TATATGAGAT
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 110 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (42 bp):
GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
Found at i:4401567 original size:31 final size:29
Alignment explanation
Indices: 4401532--4401604 Score: 103
Period size: 29 Copynumber: 2.4 Consensus size: 29
4401522 TGCTAGTTAT
4401532 TATGGATATTCAATATATCTTGCTTAGCTAC
1 TATGGATATT--ATATATCTTGCTTAGCTAC
*
4401563 TATGGATATTGTATATCTTGCTTAGCTAC
1 TATGGATATTATATATCTTGCTTAGCTAC
4401592 -AGTGGATATTATA
1 TA-TGGATATTATA
4401605 ACTATTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 1 0.03
29 28 0.72
31 10 0.26
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.42
Consensus pattern (29 bp):
TATGGATATTATATATCTTGCTTAGCTAC
Found at i:4405892 original size:187 final size:187
Alignment explanation
Indices: 4405573--4405946 Score: 678
Period size: 187 Copynumber: 2.0 Consensus size: 187
4405563 CAATTTTACA
** *
4405573 TATTCATGAGTTGAGTGCTTTATTTTCAATATTTTATAACAATTGATATCACTCATGAATAATGA
1 TATTCATGAGTTGAGTGCTTTATTTTCAATATTCCATAACAATTGATATAACTCATGAATAATGA
4405638 ATTATTGAGAAAATAGTATGTACCTTGAATTTCAATGCTTGCATATTTTTGATTGGTATATGTCT
66 ATTATTGAGAAAATAGTATGTACCTTGAATTTCAATGCTTGCATATTTTTGATTGGTATATGTCT
4405703 ATATAATTTTTTTAAAAATTATTATACTCATGCTTGCATTTCGATAAACAAAATTGG
131 ATATAATTTTTTTAAAAATTATTATACTCATGCTTGCATTTCGATAAACAAAATTGG
* * *
4405760 NTATTCATGAGTTGAGTGCTTTATTTTCAATATTCCATAATAATTGATATAACTCATTAATCATG
1 -TATTCATGAGTTGAGTGCTTTATTTTCAATATTCCATAACAATTGATATAACTCATGAATAATG
4405825 AATTATTGAG-AAATAGTATGTACCTTGAATTTCAATGCTTGCATATTTTTGATTGGTATATGTC
65 AATTATTGAGAAAATAGTATGTACCTTGAATTTCAATGCTTGCATATTTTTGATTGGTATATGTC
4405889 TATATAATTTTTTTAAAAATTATTATACTCATGCTTGCATTTCGATAAACAAAATTGG
130 TATATAATTTTTTTAAAAATTATTATACTCATGCTTGCATTTCGATAAACAAAATTGG
4405947 CATCATAGCC
Statistics
Matches: 180, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
187 112 0.62
188 68 0.38
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (187 bp):
TATTCATGAGTTGAGTGCTTTATTTTCAATATTCCATAACAATTGATATAACTCATGAATAATGA
ATTATTGAGAAAATAGTATGTACCTTGAATTTCAATGCTTGCATATTTTTGATTGGTATATGTCT
ATATAATTTTTTTAAAAATTATTATACTCATGCTTGCATTTCGATAAACAAAATTGG
Found at i:4407905 original size:31 final size:31
Alignment explanation
Indices: 4407870--4407942 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 31
4407860 GTTATTATAT
4407870 ATATTCAATATATCTTACTTAGCTACTATGG
1 ATATTCAATATATCTTACTTAGCTACTATGG
* **
4407901 ATATT--GTATATCTTGTTTAGCTACTATGG
1 ATATTCAATATATCTTACTTAGCTACTATGG
4407930 ATATTACAA-ATAT
1 ATATT-CAATATAT
4407943 TTTATTGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
29 26 0.74
31 9 0.26
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (31 bp):
ATATTCAATATATCTTACTTAGCTACTATGG
Found at i:4407914 original size:29 final size:29
Alignment explanation
Indices: 4407878--4407934 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
4407868 ATATATTCAA
4407878 TATATCTTACTTAGCTACTATGGATATTG
1 TATATCTTACTTAGCTACTATGGATATTG
**
4407907 TATATCTTGTTTAGCTACTATGGATATT
1 TATATCTTACTTAGCTACTATGGATATT
4407935 ACAAATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.47
Consensus pattern (29 bp):
TATATCTTACTTAGCTACTATGGATATTG
Found at i:4410262 original size:216 final size:215
Alignment explanation
Indices: 4409884--4410312 Score: 788
Period size: 216 Copynumber: 2.0 Consensus size: 215
4409874 TTTGTTGGTT
*
4409884 CTAAATAAATGTGCTAAAATGAGGGTGAATAGCACTTTTTGGCTCTTACTAAAATTGACTTCTAA
1 CTAAGTAAATGTGCTAAAATGAGGGTGAATAGCACTTTTTGGCTCTTACTAAAATTGACTTCTAA
4409949 TTGGGACAAATGCAAAATAAAAGAAAGATTTAAAGATGAATGAAAAATTAAAAACAGAGCAAACA
66 TTGGGACAAATGCAAAATAAAAGAAAGATTTAAAGATGAATGAAAAATTAAAAACAGAGCAAACA
*
4410014 ATCACACAAGAATTTATAATGGTTCAATCCAAGACCTACATCCACTACCTTCATTATCCAACCAA
131 ATCACACAAGAATTTATAATGGTTCAATCCAAGACCTACATCCACTACCTTCATTATCCAAACAA
4410079 AGATTTTCCAAA-CAATCCA
196 AGATTTTCCAAACCAATCCA
4410098 CTAAGNTAAATGTGCTAAAATGAGGGTGAATAGCACTTTTTGGCTCTTACTAAAATTGACTTCTA
1 CTAAG-TAAATGTGCTAAAATGAGGGTGAATAGCACTTTTTGGCTCTTACTAAAATTGACTTCTA
4410163 ATTGGGGACAAATGCAAAATAAAAGAAAGATTTAAAGATGAATGAAAAATTAAAAACAGAGCAAA
65 ATT-GGGACAAATGCAAAATAAAAGAAAGATTTAAAGATGAATGAAAAATTAAAAACAGAGCAAA
* *
4410228 CAATCACACAAGAATTTATAATGGTTCAATCCAAGACCTACATCCACTACCTTGATTATTCAAAC
129 CAATCACACAAGAATTTATAATGGTTCAATCCAAGACCTACATCCACTACCTTCATTATCCAAAC
*
4410293 AAGGATTTTCCAAACCAATC
194 AAAGATTTTCCAAACCAATC
4410313 ACAAGCTCAG
Statistics
Matches: 207, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
214 4 0.02
215 62 0.30
216 136 0.66
217 5 0.02
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (215 bp):
CTAAGTAAATGTGCTAAAATGAGGGTGAATAGCACTTTTTGGCTCTTACTAAAATTGACTTCTAA
TTGGGACAAATGCAAAATAAAAGAAAGATTTAAAGATGAATGAAAAATTAAAAACAGAGCAAACA
ATCACACAAGAATTTATAATGGTTCAATCCAAGACCTACATCCACTACCTTCATTATCCAAACAA
AGATTTTCCAAACCAATCCA
Found at i:4411830 original size:32 final size:33
Alignment explanation
Indices: 4411763--4411831 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
4411753 TCATAATTGG
* *
4411763 ACTTGAACGATCAATGGTTAGGGCCTACGTTGC
1 ACTTGAACGATCAATGGTTAGGGCCTACATGGC
* *
4411796 ACTTGAATGATCAATGGTTA-GGCCTTCATGGC
1 ACTTGAACGATCAATGGTTAGGGCCTACATGGC
4411828 ACTT
1 ACTT
4411832 ACACAGGACG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (33 bp):
ACTTGAACGATCAATGGTTAGGGCCTACATGGC
Found at i:4412481 original size:21 final size:20
Alignment explanation
Indices: 4412457--4412520 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 20
4412447 GCTTGCTCCA
*
4412457 CATCCTCATCGCCACCACTAT
1 CATCGTCATC-CCACCACTAT
*
4412478 CATCGTC-T-CCACCACCAT
1 CATCGTCATCCCACCACTAT
*
4412496 CATCGTCATCACCACCACTAA
1 CATCGTCATC-CCACCACTAT
4412517 CATC
1 CATC
4412521 ATCCCTGTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 16 0.44
19 1 0.03
20 1 0.03
21 18 0.50
ACGTcount: A:0.27, C:0.47, G:0.05, T:0.22
Consensus pattern (20 bp):
CATCGTCATCCCACCACTAT
Found at i:4412491 original size:18 final size:18
Alignment explanation
Indices: 4412468--4412512 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
4412458 ATCCTCATCG
*
4412468 CCACCACTATCATCGTCT
1 CCACCACCATCATCGTCT
4412486 CCACCACCATCATCGTCAT
1 CCACCACCATCATCGTC-T
4412505 -CACCACCA
1 CCACCACCA
4412513 CTAACATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.27, C:0.49, G:0.04, T:0.20
Consensus pattern (18 bp):
CCACCACCATCATCGTCT
Found at i:4415629 original size:31 final size:32
Alignment explanation
Indices: 4415591--4415662 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
4415581 TCAGAGACGC
*
4415591 TACATGCCATTTACAAAA-AA-TTTAATGTTGT
1 TACATGCCA-TTACAAAACAAGTTAAATGTTGT
*
4415622 TACATGCCA-TGCAAAACAAGTTAAATGTTGT
1 TACATGCCATTACAAAACAAGTTAAATGTTGT
*
4415653 TACACGCCAT
1 TACATGCCAT
4415663 GCCAAATAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 6 0.17
30 2 0.06
31 27 0.77
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (32 bp):
TACATGCCATTACAAAACAAGTTAAATGTTGT
Found at i:4415809 original size:28 final size:28
Alignment explanation
Indices: 4415716--4415801 Score: 145
Period size: 28 Copynumber: 3.1 Consensus size: 28
4415706 TTGCTTTATG
4415716 CCATGCCTAATGACTAAGTTGTTACACA
1 CCATGCCTAATGACTAAGTTGTTACACA
*
4415744 CCATGCCTAATGACTAAGTTGTTACACG
1 CCATGCCTAATGACTAAGTTGTTACACA
* *
4415772 CCATGCCTAATGACTAAGCTATTACACA
1 CCATGCCTAATGACTAAGTTGTTACACA
4415800 CC
1 CC
4415802 TTACCTAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (28 bp):
CCATGCCTAATGACTAAGTTGTTACACA
Found at i:4416032 original size:148 final size:147
Alignment explanation
Indices: 4415805--4416122 Score: 420
Period size: 147 Copynumber: 2.2 Consensus size: 147
4415795 ACACACCTTA
** * * *
4415805 CCTAAAATTCCTAAGATGCTACATTTCATGCCTAAAATTCTTAGGTTACTACACACCAAGCCTAA
1 CCTAAAATTCCTAAGATGCTACACATCAGGCCTAAAATTCCTAGGCTACTACACACCAAGCCTAA
* *
4415870 AAATCTTTGATTGCTAAACGTCATACCTACAAATTCTTAGTTGCTACACACCATGCCTAATAACT
66 AAATCCTTGATTGCTAAA-GCCATACCTACAAATTCTTAGTTGCTACACACCATGCCTAATAACT
* * *
4415935 AAGTTGTTACATGCTATG
130 AAGTTGGTACATGCCACG
** ** **
4415953 GTTAAAATTCCTAAGATGCTACACATCAGGCCTAAAATTCCTAGGCTGTTACACGTCAAGCCTAA
1 CCTAAAATTCCTAAGATGCTACACATCAGGCCTAAAATTCCTAGGCTACTACACACCAAGCCTAA
* * * * * *
4416018 AAATCCTTGCTTGCTACAGCCATACCTATAAATTCTTGGTTGCTACACGCCATGCCTAATGACTA
66 AAATCCTTGATTGCTAAAGCCATACCTACAAATTCTTAGTTGCTACACACCATGCCTAATAACTA
4416083 AGTTGGTACATGCCACG
131 AGTTGGTACATGCCACG
*
4416100 CCTAAAATTCCTAAGATGGTACA
1 CCTAAAATTCCTAAGATGCTACA
4416123 TGCCATGCCT
Statistics
Matches: 145, Mismatches: 25, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
147 76 0.52
148 69 0.48
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (147 bp):
CCTAAAATTCCTAAGATGCTACACATCAGGCCTAAAATTCCTAGGCTACTACACACCAAGCCTAA
AAATCCTTGATTGCTAAAGCCATACCTACAAATTCTTAGTTGCTACACACCATGCCTAATAACTA
AGTTGGTACATGCCACG
Found at i:4416050 original size:29 final size:30
Alignment explanation
Indices: 4416013--4416076 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
4416003 ACACGTCAAG
4416013 CCTAAAAATCCTTGCTTGCTACA-GCCATA
1 CCTAAAAATCCTTGCTTGCTACACGCCATA
* * * *
4416042 CCTATAAATTCTTGGTTGCTACACGCCATG
1 CCTAAAAATCCTTGCTTGCTACACGCCATA
4416072 CCTAA
1 CCTAA
4416077 TGACTAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.69
30 9 0.31
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (30 bp):
CCTAAAAATCCTTGCTTGCTACACGCCATA
Found at i:4416153 original size:147 final size:148
Alignment explanation
Indices: 4415760--4416157 Score: 483
Period size: 148 Copynumber: 2.7 Consensus size: 148
4415750 CTAATGACTA
* * * ** * *
4415760 AGTTGTTACACGCCATGCCTAATGACTAAGCTATTACACACCTTACCTAAAATTCCTAAGATGCT
1 AGTTGCTACACGCCATGCCTAATGACTAAGTTGTTACATGCCATGCCTAAAATTCCTAAGATGCT
* * * * *
4415825 ACATTTCATGCCTAAAATTCTTAGGTTACTACACACCAAGCCTAAAAATCTTTGATTGCTAAACG
66 ACATATCATGCCTAAAATTCCTAGGTTGCTACACGCCAAGCCTAAAAATCCTTGATTGCTAAACG
*
4415890 TCATACCTACAAATTCTT
131 CCATACCTACAAATTCTT
* * * **
4415908 AGTTGCTACACACCATGCCTAATAACTAAGTTGTTACATGCTATGGTTAAAATTCCTAAGATGCT
1 AGTTGCTACACGCCATGCCTAATGACTAAGTTGTTACATGCCATGCCTAAAATTCCTAAGATGCT
* * * * * * *
4415973 ACACATCAGGCCTAAAATTCCTAGGCTGTTACACGTCAAGCCTAAAAATCCTTGCTTGCTACA-G
66 ACATATCATGCCTAAAATTCCTAGGTTGCTACACGCCAAGCCTAAAAATCCTTGATTGCTAAACG
*
4416037 CCATACCTATAAATTCTT
131 CCATACCTACAAATTCTT
* * * *
4416055 GGTTGCTACACGCCATGCCTAATGACTAAGTTGGTACATGCCACGCCTAAAATTCCTAAGATGGT
1 AGTTGCTACACGCCATGCCTAATGACTAAGTTGTTACATGCCATGCCTAAAATTCCTAAGATGCT
** * *
4416120 ACATGCCATGCCTAAAAATCCTAAGTTGCTACACGCCA
66 ACATATCATGCCTAAAATTCCTAGGTTGCTACACGCCA
4416158 TGCTTAACAA
Statistics
Matches: 206, Mismatches: 44, Indels: 1
0.82 0.18 0.00
Matches are distributed among these distances:
147 102 0.50
148 104 0.50
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (148 bp):
AGTTGCTACACGCCATGCCTAATGACTAAGTTGTTACATGCCATGCCTAAAATTCCTAAGATGCT
ACATATCATGCCTAAAATTCCTAGGTTGCTACACGCCAAGCCTAAAAATCCTTGATTGCTAAACG
CCATACCTACAAATTCTT
Found at i:4416158 original size:30 final size:30
Alignment explanation
Indices: 4415729--4416188 Score: 206
Period size: 30 Copynumber: 15.7 Consensus size: 30
4415719 TGCCTAATGA
* * **
4415729 CTAAGTTGTTACACACCATGCCTAATGA--
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* **
4415757 CTAAGTTGTTACACGCCATGCCTAATGA--
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* ** * * * *
4415785 CTAAGCTATTACACACCTTACCTAAAATTC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* *** *
4415815 CTAAGATGCTACATTTCATGCCTAAAATTC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* * * * *
4415845 TTAGGTTACTACACACCAAGCCTAAAAAT-
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
** * * * * *
4415874 CTTTGATTGCTAAACGTCATACCTACAAATT
1 CTAAG-TTGCTACACGCCATGCCTAAAAATC
* * *
4415905 CTTAGTTGCTACACACCATGCCTAATAA--
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* * * ** *
4415933 CTAAGTTGTTACATGCTATGGTTAAAATTC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* ** * *
4415963 CTAAGATGCTACACATCAGGCCTAAAATTC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* * * * *
4415993 CTAGGCTGTTACACGTCAAGCCTAAAAATC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* * * *
4416023 CT-TGCTTGCTACA-GCCATACCTATAAATT
1 CTAAG-TTGCTACACGCCATGCCTAAAAATC
** **
4416052 CTTGGTTGCTACACGCCATGCCTAATGA--
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* * * *
4416080 CTAAGTTGGTACATGCCACGCCTAAAATTC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* * *
4416110 CTAAGATGGTACATGCCATGCCTAAAAATC
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
* *
4416140 CTAAGTTGCTACACGCCATGCTTAACAAT-
1 CTAAGTTGCTACACGCCATGCCTAAAAATC
*
4416169 CTAAGTTGCCACACGCCATG
1 CTAAGTTGCTACACGCCATG
4416189 TTGAAATTCA
Statistics
Matches: 324, Mismatches: 97, Indels: 21
0.73 0.22 0.05
Matches are distributed among these distances:
28 86 0.27
29 43 0.13
30 191 0.59
31 4 0.01
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (30 bp):
CTAAGTTGCTACACGCCATGCCTAAAAATC
Found at i:4416379 original size:79 final size:79
Alignment explanation
Indices: 4416209--4416379 Score: 252
Period size: 79 Copynumber: 2.2 Consensus size: 79
4416199 TAAATGATGC
* * *
4416209 TACATGCCATGCCTATATTCATGCACTTAGGGAAATCCTTAAAGTTGTCACACACCGCACCCATT
1 TACATGCCATGCTTATATTCATGCACTTAGGGAAATCCCTAAAGTTGTCACACACCACACCCATT
*
4416274 TTGTCTCAATATGT
66 TTGTCTCAACATGT
* ** **
4416288 TACATGCCATGCTTATATTCATGTACTTAGGGAAATCCCTGGAGTTGTCACACACCATGCCCATT
1 TACATGCCATGCTTATATTCATGCACTTAGGGAAATCCCTAAAGTTGTCACACACCACACCCATT
*
4416353 TTGTCTCGACATGT
66 TTGTCTCAACATGT
4416367 TACATGCCATGCT
1 TACATGCCATGCT
4416380 AACAACATTC
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (79 bp):
TACATGCCATGCTTATATTCATGCACTTAGGGAAATCCCTAAAGTTGTCACACACCACACCCATT
TTGTCTCAACATGT
Found at i:4418671 original size:21 final size:21
Alignment explanation
Indices: 4418627--4418678 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
4418617 GGATATGTTT
* *
4418627 ATGCTTTCATGACAAAGATAG
1 ATGCCTTCATGACAAAAATAG
4418648 ATGCCTTCATGACAAAAACT-G
1 ATGCCTTCATGACAAAAA-TAG
*
4418669 ATGCCATCAT
1 ATGCCTTCAT
4418679 TCAAAGTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (21 bp):
ATGCCTTCATGACAAAAATAG
Found at i:4421180 original size:22 final size:23
Alignment explanation
Indices: 4421150--4421196 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
4421140 ATATAAAGTT
4421150 ATTTGAGCTTAATT-TTAATAGTA
1 ATTTGAGCTTAATTCTT-ATAGTA
*
4421173 ATTT-AGCTTAGTTCTTATAGTA
1 ATTTGAGCTTAATTCTTATAGTA
4421195 AT
1 AT
4421197 GCATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49
Consensus pattern (23 bp):
ATTTGAGCTTAATTCTTATAGTA
Found at i:4423448 original size:2 final size:2
Alignment explanation
Indices: 4423441--4423465 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4423431 TTCCCTATAT
4423441 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
4423466 ATACATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:4424904 original size:72 final size:72
Alignment explanation
Indices: 4424813--4424987 Score: 253
Period size: 72 Copynumber: 2.4 Consensus size: 72
4424803 GTAGATTGTG
* *
4424813 GATGGGATTAGGCAATGCTCCAGAGAGATT-AGTAAAACTTAGATCCAAATATTCCAAAGAAACT
1 GATGGAATTAGGCAATGCTCCAGAGAGATTCA-AAAAACTTAGATCCAAATATTCCAAAGAAACT
4424877 AAATTGCC
65 AAATTGCC
* * * *
4424885 GATGGAATTAAGCAATGCTCCAGAGAGATTCAAAAAACTTAGATCCAAATGTTTCAATGAAACTA
1 GATGGAATTAGGCAATGCTCCAGAGAGATTCAAAAAACTTAGATCCAAATATTCCAAAGAAACTA
4424950 AATTGCC
66 AATTGCC
* * *
4424957 AATGAAATTAGGCAATGGTCCAGAGAGATTC
1 GATGGAATTAGGCAATGCTCCAGAGAGATTC
4424988 GCATGACTTA
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
72 91 0.99
73 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (72 bp):
GATGGAATTAGGCAATGCTCCAGAGAGATTCAAAAAACTTAGATCCAAATATTCCAAAGAAACTA
AATTGCC
Found at i:4433802 original size:16 final size:16
Alignment explanation
Indices: 4433781--4433835 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
4433771 TTATTTAATT
4433781 ATAATTTAACTCCTAA
1 ATAATTTAACTCCTAA
4433797 ATAATTTAACTCCTAA
1 ATAATTTAACTCCTAA
* *
4433813 ACAGTTTAACTCCTAA
1 ATAATTTAACTCCTAA
4433829 ATAATTT
1 ATAATTT
4433836 TTAGTTCTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (16 bp):
ATAATTTAACTCCTAA
Found at i:4434809 original size:29 final size:28
Alignment explanation
Indices: 4434750--4434811 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
4434740 ATGTCTATGG
* **
4434750 GTAATTTTTCAGTTTTTGGGGCAAAAAT
1 GTAATTTTTCACTTTACGGGGCAAAAAT
* *
4434778 GTAATTTTTCACTTTACGGGAGTAAAAGT
1 GTAATTTTTCACTTTACGGG-GCAAAAAT
4434807 GTAAT
1 GTAAT
4434812 ATTTAAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (28 bp):
GTAATTTTTCACTTTACGGGGCAAAAAT
Found at i:4435989 original size:13 final size:13
Alignment explanation
Indices: 4435971--4435995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4435961 GGAAAATGGG
4435971 ATTTTATAAAATA
1 ATTTTATAAAATA
4435984 ATTTTATAAAAT
1 ATTTTATAAAAT
4435996 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:4454933 original size:14 final size:14
Alignment explanation
Indices: 4454914--4454941 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4454904 TTGTAATGTT
4454914 GACCACAAAGCGAA
1 GACCACAAAGCGAA
4454928 GACCACAAAGCGAA
1 GACCACAAAGCGAA
4454942 AGATTGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.29, G:0.21, T:0.00
Consensus pattern (14 bp):
GACCACAAAGCGAA
Found at i:4466292 original size:4 final size:4
Alignment explanation
Indices: 4466283--4466384 Score: 51
Period size: 4 Copynumber: 25.5 Consensus size: 4
4466273 AGGGTGTAGG
* * * * ** *
4466283 ATAT ATAT ATAC ATAC ATAT ATAT ATAC ATAC ATAT ACGT ATAT ACAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * ** * * * * *
4466331 ATAT GTAT GTAT ACGT ATAT AAAT ATAT GTAT GTAT ACAT ATAT GTAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
*
4466379 GTAT AT
1 ATAT AT
4466385 GTATTGAAAT
Statistics
Matches: 74, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (4 bp):
ATAT
Found at i:4466304 original size:14 final size:14
Alignment explanation
Indices: 4466285--4466334 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
4466275 GGTGTAGGAT
4466285 ATATATATACATAC
1 ATATATATACATAC
4466299 ATATATATATACATAC
1 --ATATATATACATAC
** *
4466315 ATATACGTATATAC
1 ATATATATACATAC
4466329 ATATAT
1 ATATAT
4466335 GTATGTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 16 0.53
16 14 0.47
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (14 bp):
ATATATATACATAC
Found at i:4466304 original size:16 final size:16
Alignment explanation
Indices: 4466283--4466331 Score: 80
Period size: 16 Copynumber: 2.9 Consensus size: 16
4466273 AGGGTGTAGG
4466283 ATATATATATACATAC
1 ATATATATATACATAC
4466299 ATATATATATACATAC
1 ATATATATATACATAC
4466315 ATATACGTATATACATA
1 ATATA--TATATACATA
4466332 TATGTATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 21 0.68
18 10 0.32
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (16 bp):
ATATATATATACATAC
Found at i:4466332 original size:24 final size:24
Alignment explanation
Indices: 4466299--4466357 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
4466289 ATATACATAC
*
4466299 ATATATATATACATACATATACGT
1 ATATAAATATACATACATATACGT
* ** **
4466323 ATATACATATATGTATGTATACGT
1 ATATAAATATACATACATATACGT
4466347 ATATAAATATA
1 ATATAAATATA
4466358 TGTATGTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (24 bp):
ATATAAATATACATACATATACGT
Found at i:4466334 original size:16 final size:16
Alignment explanation
Indices: 4466287--4466374 Score: 59
Period size: 16 Copynumber: 5.4 Consensus size: 16
4466277 TGTAGGATAT
* *
4466287 ATATATACATACATAT
1 ATATATACATATATAC
4466303 ATATATACATACATATAC
1 ATATATACAT--ATATAC
* **
4466321 GTATATACATATATGT
1 ATATATACATATATAC
* * *
4466337 ATGTATACGTATATAA
1 ATATATACATATATAC
** *
4466353 ATATATGTATGTATAC
1 ATATATACATATATAC
4466369 ATATAT
1 ATATAT
4466375 GTATGTATAT
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
16 41 0.76
18 13 0.24
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (16 bp):
ATATATACATATATAC
Found at i:4466358 original size:24 final size:24
Alignment explanation
Indices: 4466316--4466374 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
4466306 TATACATACA
*
4466316 TATACGTATATACATATATGTATG
1 TATACGTATATAAATATATGTATG
4466340 TATACGTATATAAATATATGTATG
1 TATACGTATATAAATATATGTATG
*
4466364 TATACATATAT
1 TATACGTATAT
4466375 GTATGTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (24 bp):
TATACGTATATAAATATATGTATG
Found at i:4466375 original size:16 final size:16
Alignment explanation
Indices: 4466348--4466383 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
4466338 TGTATACGTA
4466348 TATAAATATATGTATG
1 TATAAATATATGTATG
*
4466364 TATACATATATGTATG
1 TATAAATATATGTATG
4466380 TATA
1 TATA
4466384 TGTATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (16 bp):
TATAAATATATGTATG
Found at i:4466597 original size:25 final size:23
Alignment explanation
Indices: 4466569--4466636 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 23
4466559 TATAAAAACT
4466569 AATAAATAATAACTAAATTAAGATA
1 AATAAATAA-AACTAAATTAA-ATA
* *
4466594 AATAAACATAAAATTAAATTAATTA
1 AAT-AA-ATAAAACTAAATTAAATA
*
4466619 AATAAAAACAAACTAAAT
1 AATAAATA-AAACTAAAT
4466637 GGAAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
23 2 0.06
24 10 0.28
25 8 0.22
26 12 0.33
27 4 0.11
ACGTcount: A:0.66, C:0.06, G:0.01, T:0.26
Consensus pattern (23 bp):
AATAAATAAAACTAAATTAAATA
Found at i:4468510 original size:12 final size:12
Alignment explanation
Indices: 4468493--4468527 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
4468483 CCCACCAAAT
4468493 TTTCCAATGGAA
1 TTTCCAATGGAA
*
4468505 TTTCCAACGG-A
1 TTTCCAATGGAA
4468516 TTTCCAATGGAA
1 TTTCCAATGGAA
4468528 AATTTTCCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (12 bp):
TTTCCAATGGAA
Found at i:4468838 original size:192 final size:192
Alignment explanation
Indices: 4468585--4468936 Score: 668
Period size: 192 Copynumber: 1.8 Consensus size: 192
4468575 TGAAAGCCCG
*
4468585 CCAAAGTTTCCAACAAAAATTTCCGTTGGAAAAATCTATTACCAACGAAAATTTTTCAACGGATT
1 CCAAAGTTTCCAACAAAAATTTCCATTGGAAAAATCTATTACCAACGAAAATTTTTCAACGGATT
4468650 TCCAACGGATATGAATAAAAAAATTTAATTATTTTTTTCAACGGATTTCTAACGAATTTCCAACG
66 TCCAACGGATATGAATAAAAAAATTTAATTATTTTTTTCAACGGATTTCTAACGAATTTCCAACG
* *
4468715 GAAGATTTTTCGTTGGAAATTCGTTGGAAAATGTCTTGGTGCCAACAAATAATTCCTTCCCA
131 GAAGATTTTTCGTTGAAAATCCGTTGGAAAATGTCTTGGTGCCAACAAATAATTCCTTCCCA
*
4468777 CCAAATTTTCCAACAAAAATTTCCATTGGAAAAATCTATTACCAACGAAAATTTTTCAACGGATT
1 CCAAAGTTTCCAACAAAAATTTCCATTGGAAAAATCTATTACCAACGAAAATTTTTCAACGGATT
4468842 TCCAACGGATATGAATAAAAAAATTTAATTATTTTTTTCAACGGATTTCTAACGAATTTCCAACG
66 TCCAACGGATATGAATAAAAAAATTTAATTATTTTTTTCAACGGATTTCTAACGAATTTCCAACG
4468907 GAAGATTTTTCGTTGAAAATCCGTTGGAAA
131 GAAGATTTTTCGTTGAAAATCCGTTGGAAA
4468937 GTTGAGGAAA
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
192 156 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (192 bp):
CCAAAGTTTCCAACAAAAATTTCCATTGGAAAAATCTATTACCAACGAAAATTTTTCAACGGATT
TCCAACGGATATGAATAAAAAAATTTAATTATTTTTTTCAACGGATTTCTAACGAATTTCCAACG
GAAGATTTTTCGTTGAAAATCCGTTGGAAAATGTCTTGGTGCCAACAAATAATTCCTTCCCA
Found at i:4469316 original size:147 final size:146
Alignment explanation
Indices: 4469048--4469341 Score: 570
Period size: 147 Copynumber: 2.0 Consensus size: 146
4469038 TGGAAAATTC
*
4469048 TGTTGGTAATAGTTTTTTTAAATTTTTATGCTTCAAATATGTTAAACTTTTTATAAATTTTATTA
1 TGTTGGTAATAGTTTTTTAAAATTTTTATGCTTCAAATATGTTAAACTTTTTATAAATTTTATTA
4469113 ATCCTTTATAAAAAATAGATATTAATAAAAGGAAATATATTAATATGTGAAGTTTATAATATTTA
66 ATCCTTTATAAAAAATAGATATTAATAAAAGGAAATATATTAATATGTGAAGTTTATAATATTTA
4469178 AAAGTTTAATTATGTT
131 AAAGTTTAATTATGTT
4469194 TNGTTGGTAATAGTTTTTTAAAATTTTTATGCTTCAAATATGTTAAACTTTTTATAAATTTTATT
1 T-GTTGGTAATAGTTTTTTAAAATTTTTATGCTTCAAATATGTTAAACTTTTTATAAATTTTATT
4469259 AATCCTTTATAAAAAATAGATATTAATAAAAGGAAATATATTAATATGTGAAGTTTATAATATTT
65 AATCCTTTATAAAAAATAGATATTAATAAAAGGAAATATATTAATATGTGAAGTTTATAATATTT
4469324 AAAAGTTTAATTATGTT
130 AAAAGTTTAATTATGTT
4469341 T
1 T
4469342 TCTTATGCTA
Statistics
Matches: 146, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
146 1 0.01
147 145 0.99
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (146 bp):
TGTTGGTAATAGTTTTTTAAAATTTTTATGCTTCAAATATGTTAAACTTTTTATAAATTTTATTA
ATCCTTTATAAAAAATAGATATTAATAAAAGGAAATATATTAATATGTGAAGTTTATAATATTTA
AAAGTTTAATTATGTT
Found at i:4470403 original size:135 final size:134
Alignment explanation
Indices: 4470225--4470582 Score: 592
Period size: 135 Copynumber: 2.6 Consensus size: 134
4470215 GTTGCTCACT
* * ** *
4470225 TTCCCCAAATCTCCTTTCTTGTGCGGAGAGCA-GAGGCTTGTTGCTGCCTCTTCAAGCTACCCGG
1 TTCCCCAAATCTCC-TTGTTGTGCCGAGAGCATTTGG-TTGTTGCTGCCTCTTCAAGCTACCTGG
* *
4470289 GTTCCCCATGTTTTGCCGACCGTACAGTGTTGTTGCTGCCGATCTCCGAGCGTAGAGTCAAGCTA
64 GTTCCCCTTGTTTTGCCGACCGTACAGTGTTGTTGCTGCCAATCTCCGAGCGTAGAGTCAAGCTA
4470354 CCTGGG
129 CCTGGG
4470360 TTCCCCAAATCTCGCTTGTTGTGCCGAGAGCATTTGGTTGTTGCTGCCTCTTCAAGCTACCTGGG
1 TTCCCCAAATCTC-CTTGTTGTGCCGAGAGCATTTGGTTGTTGCTGCCTCTTCAAGCTACCTGGG
* *
4470425 TTCCCCTTGTTTTGCCGTCTGTACAGTGTTGTTGCTGCCAATCTCCGAGCGTAGAGTCAAGCTAC
65 TTCCCCTTGTTTTGCCGACCGTACAGTGTTGTTGCTGCCAATCTCCGAGCGTAGAGTCAAGCTAC
4470490 CTGGG
130 CTGGG
4470495 TTCCCCAAATCTCCCTTGTTGTGCCGAGAGCATTTGGTTGTTGCTGCCTCTTCAAGCTACCTGGG
1 TTCCCCAAATCT-CCTTGTTGTGCCGAGAGCATTTGGTTGTTGCTGCCTCTTCAAGCTACCTGGG
4470560 TTCCCCTTGTTTTGCCGACCGTA
65 TTCCCCTTGTTTTGCCGACCGTA
4470583 GAGTCAAGGT
Statistics
Matches: 209, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
135 205 0.98
136 4 0.02
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (134 bp):
TTCCCCAAATCTCCTTGTTGTGCCGAGAGCATTTGGTTGTTGCTGCCTCTTCAAGCTACCTGGGT
TCCCCTTGTTTTGCCGACCGTACAGTGTTGTTGCTGCCAATCTCCGAGCGTAGAGTCAAGCTACC
TGGG
Found at i:4471475 original size:21 final size:20
Alignment explanation
Indices: 4471406--4471475 Score: 51
Period size: 20 Copynumber: 3.6 Consensus size: 20
4471396 TAAATATTTT
4471406 AAATATTTT-AA-AT-TA-A
1 AAATATTTTAAATATATATA
*
4471422 AAATATTTTAAAGTATATGT-
1 AAATATTTTAAA-TATATATA
** *
4471442 AAATATTAAAAATACTGTATA
1 AAATATTTTAAATA-TATATA
4471463 AAATATTTTAAAT
1 AAATATTTTAAAT
4471476 TTAAATTTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
16 9 0.22
17 2 0.05
19 4 0.10
20 14 0.35
21 11 0.28
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.41
Consensus pattern (20 bp):
AAATATTTTAAATATATATA
Found at i:4471479 original size:29 final size:27
Alignment explanation
Indices: 4471397--4471480 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 27
4471387 TAATAAATAT
*
4471397 AAATATT-TTAAATATTTTAAA-TTAA
1 AAATATTATAAAATATTTTAAATTTAA
* * *
4471422 AAATATTTTAAAGTATATGTAAATATTAA
1 AAATATTATAAAATAT-TTTAAAT-TTAA
4471451 AAATACTGTATAAAATATTTTAAATTTAA
1 AAATA-T-TATAAAATATTTTAAATTTAA
4471480 A
1 A
4471481 TTTTATTTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
25 7 0.15
26 6 0.13
27 5 0.11
29 14 0.30
30 7 0.15
31 8 0.17
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (27 bp):
AAATATTATAAAATATTTTAAATTTAA
Found at i:4471732 original size:158 final size:157
Alignment explanation
Indices: 4471444--4471758 Score: 576
Period size: 158 Copynumber: 2.0 Consensus size: 157
4471434 GTATATGTAA
*
4471444 ATATTAAAAATACTGTATAAAATATTTTAAATTTAAATTTTATTTAAAGTATATTATTTATTAAT
1 ATATTAAAAATACTGTATAAAATATTTTAAAATTAAATTTTATTTAAAGTATATTATTTATTAAT
4471509 AATATATGTTATCAAGTTGAGTGACACCTTAAATATATAGTTGAGAGCTTAATTAGACCTAACAA
66 AATATATGTTATCAAGTTGAGTGACACCTTAAATATATAGTTGAGAGCTTAATTAGACCTAACAA
4471574 TTTGTATTTTCGTTTTTTAACTATTTT
131 TTTGTATTTTCGTTTTTTAACTATTTT
* * * *
4471601 NATATTAAAAATGCTTTTTAAAATATTTTAAAATTAAATTTTATTTAAATTATATTATTTATTAA
1 -ATATTAAAAATACTGTATAAAATATTTTAAAATTAAATTTTATTTAAAGTATATTATTTATTAA
4471666 TAATATATGTTATCAAGTTGAGTGACACCTTAAATATATAGTTGAGAGCTTAATTAGACCTAACA
65 TAATATATGTTATCAAGTTGAGTGACACCTTAAATATATAGTTGAGAGCTTAATTAGACCTAACA
4471731 ATTTGTATTTTCGTTTTTTAACTATTTT
130 ATTTGTATTTTCGTTTTTTAACTATTTT
4471759 GTGTAAACAT
Statistics
Matches: 152, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
158 152 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.46
Consensus pattern (157 bp):
ATATTAAAAATACTGTATAAAATATTTTAAAATTAAATTTTATTTAAAGTATATTATTTATTAAT
AATATATGTTATCAAGTTGAGTGACACCTTAAATATATAGTTGAGAGCTTAATTAGACCTAACAA
TTTGTATTTTCGTTTTTTAACTATTTT
Found at i:4482167 original size:15 final size:15
Alignment explanation
Indices: 4482149--4482205 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
4482139 ACATGCAAAG
4482149 AGATGAAGATGAAGA
1 AGATGAAGATGAAGA
*
4482164 AGATG-ACATGGAAGA
1 AGATGAAGAT-GAAGA
*
4482179 AGATGAAAAT--A-A
1 AGATGAAGATGAAGA
4482191 AGATGAAGATGAAGA
1 AGATGAAGATGAAGA
4482206 TGCAATTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
12 10 0.29
13 1 0.03
14 4 0.12
15 16 0.47
16 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.30, T:0.14
Consensus pattern (15 bp):
AGATGAAGATGAAGA
Found at i:4489756 original size:16 final size:16
Alignment explanation
Indices: 4489729--4489768 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
4489719 CCTCTCCACA
4489729 AATTTTTTATTTCTTT
1 AATTTTTTATTTCTTT
*
4489745 -ATTTTTTCATTTTTTT
1 AATTTTTT-ATTTCTTT
4489761 AATTTTTT
1 AATTTTTT
4489769 TATGTTCCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 7 0.33
16 7 0.33
17 7 0.33
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
AATTTTTTATTTCTTT
Found at i:4495086 original size:32 final size:32
Alignment explanation
Indices: 4494973--4495096 Score: 115
Period size: 32 Copynumber: 3.8 Consensus size: 32
4494963 TTTTACACTA
* * * *
4494973 GTTTTTCATAGGTTAAACTAAAACCCAAAGTG
1 GTTTTTCAAAGGCTCAACCAAAACCCAAAGTG
* *
4495005 ATTTTTCAAAGGCTCAACCACAACCTTTCACAA-TG
1 GTTTTTCAAAGGCTCAACCAAAACC---CA-AAGTG
* **
4495040 GCTTTTCACGGGCTCAACCAAAACCCAAAGTG
1 GTTTTTCAAAGGCTCAACCAAAACCCAAAGTG
*
4495072 GTTTTTCAAAGGCTCAACCACAACC
1 GTTTTTCAAAGGCTCAACCAAAACC
4495097 TACAACAATC
Statistics
Matches: 72, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
31 2 0.03
32 44 0.61
35 24 0.33
36 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (32 bp):
GTTTTTCAAAGGCTCAACCAAAACCCAAAGTG
Done.