Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 13 of 30
Found at i:4499022 original size:12 final size:12
Alignment explanation
Indices: 4499005--4499029 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4498995 AAATCCTTAC
4499005 TACTTACCTCTT
1 TACTTACCTCTT
4499017 TACTTACCTCTT
1 TACTTACCTCTT
4499029 T
1 T
4499030 TCCATTGCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (12 bp):
TACTTACCTCTT
Found at i:4499815 original size:13 final size:13
Alignment explanation
Indices: 4499797--4499822 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4499787 CATCAAATCC
4499797 TTACTTTATCTCT
1 TTACTTTATCTCT
4499810 TTACTTTATCTCT
1 TTACTTTATCTCT
4499823 CAATGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (13 bp):
TTACTTTATCTCT
Found at i:4507956 original size:15 final size:15
Alignment explanation
Indices: 4507936--4507979 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
4507926 CTTAAAACAA
*
4507936 CTTTAAAACCAAAAG
1 CTTTAAAATCAAAAG
*
4507951 CTTTAAAATCTAAAG
1 CTTTAAAATCAAAAG
4507966 CTTTAAAATCAAAA
1 CTTTAAAATCAAAA
4507980 TCTCTAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.27
Consensus pattern (15 bp):
CTTTAAAATCAAAAG
Found at i:4515587 original size:180 final size:179
Alignment explanation
Indices: 4515401--4515727 Score: 392
Period size: 180 Copynumber: 1.8 Consensus size: 179
4515391 AAAGTAAGCC
* * * * * *
4515401 AAAACCGAAAATGCC-TCTACAGATAAAGGTCATGGTTTTGAATTTTTTTTG-ATAGCCCAA-AA
1 AAAACCGAAAATGCCACCAACAGATAAAGGTCACGGTTTTGAA-ATTTTTTGAATAGACAAATAA
* **
4515463 CGTCTCCTAAAATCATGAAAAAATATTATGGAATA-TCTCCATGAGTTATCTATCAGGATAAATT
65 C--CTCCTAAAATCATGAAAAAATATTATAGAATAGT-TCCATGAGTTATCTATCAAAATAAATT
4515527 TTATTAAGAATTAAATTCCTAAGTTTGAGTCACAAAGAATTTCAAGAGTTCTCA
127 TTATT-AGAATTAAATTCCTAAGTTTGAGTCACAAAGAATTTCAAGAGTTCTCA
*** * *
4515581 AAAACCGATTCTGCCACCAATAGATAAAGGTCACGGTTTTTAAATTTTTTGAATAGACAAATAAC
1 AAAACCGAAAATGCCACCAACAGATAAAGGTCACGGTTTTGAAATTTTTTGAATAGACAAATAAC
* ** * *
4515646 CTCCTAAAATCTTGAAAATTTATTCTAGAATAGTTGCATGAGTTATCTATCAAAATAAATTTTAT
66 CTCCTAAAATCATGAAAAAATATTATAGAATAGTTCCATGAGTTATCTATCAAAATAAATTTTAT
* *
4515711 TGGCATTAAATTCCTAA
131 TAGAATTAAATTCCTAA
4515728 AGATACACCA
Statistics
Matches: 122, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
179 14 0.11
180 75 0.61
181 30 0.25
182 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (179 bp):
AAAACCGAAAATGCCACCAACAGATAAAGGTCACGGTTTTGAAATTTTTTGAATAGACAAATAAC
CTCCTAAAATCATGAAAAAATATTATAGAATAGTTCCATGAGTTATCTATCAAAATAAATTTTAT
TAGAATTAAATTCCTAAGTTTGAGTCACAAAGAATTTCAAGAGTTCTCA
Found at i:4531631 original size:20 final size:19
Alignment explanation
Indices: 4531601--4531638 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
4531591 ATAAAGATCT
*
4531601 CATTTTCCAGCAGCTTCTA
1 CATTTTCCAGCAACTTCTA
4531620 CATTTCTCCAGCAACTTCT
1 CATTT-TCCAGCAACTTCT
4531639 TCTTTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (19 bp):
CATTTTCCAGCAACTTCTA
Found at i:4531846 original size:2 final size:2
Alignment explanation
Indices: 4531839--4531887 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
4531829 TGAACTATGT
4531839 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4531881 AG AG AG A
1 AG AG AG A
4531888 TTTCATGATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4535453 original size:21 final size:21
Alignment explanation
Indices: 4535408--4535453 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
4535398 TTACTATAGC
* * *
4535408 TTCTCGTTGCAGGGAGAATCA
1 TTCTCGCTGCAGCGAGAAACA
*
4535429 TTCTCGCTGCAGCGAGAAACT
1 TTCTCGCTGCAGCGAGAAACA
4535450 TTCT
1 TTCT
4535454 GTCCCACTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (21 bp):
TTCTCGCTGCAGCGAGAAACA
Found at i:4544684 original size:36 final size:36
Alignment explanation
Indices: 4544637--4544735 Score: 126
Period size: 36 Copynumber: 2.8 Consensus size: 36
4544627 GAGTGATAAG
*
4544637 GGCCAGATGTGGGGCGTCATACCACATGAATACCTA
1 GGCCAGATGTGGGGCGTCATACCACACGAATACCTA
* * * * *
4544673 GGCCAAATGTGGGGCTTCATACCATACGAATACTTG
1 GGCCAGATGTGGGGCGTCATACCACACGAATACCTA
* *
4544709 GGCTAGATGTGGGGCGTCTTACCACAC
1 GGCCAGATGTGGGGCGTCATACCACAC
4544736 ACTTTATAAA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (36 bp):
GGCCAGATGTGGGGCGTCATACCACACGAATACCTA
Found at i:4550302 original size:80 final size:80
Alignment explanation
Indices: 4550164--4550318 Score: 213
Period size: 80 Copynumber: 1.9 Consensus size: 80
4550154 TTCTTGAGGC
* * * *
4550164 AAACATCAAATTATGATATGTTTTAGAGAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAA
1 AAACATCAAATTATGATATGTATTAGACAAAAATGAAAAAAATTAAACTTAAAATCATTTATAAA
*
4550229 GTTATTAAACTACAT
66 GTTATAAAACTACAT
* * * *
4550244 AAACATCCAATTATGATCTGTATTA-ACCAAAAATGAAGAAAATTAAACTTAAAGTCATTTATAA
1 AAACATCAAATTATGATATGTATTAGA-CAAAAATGAAAAAAATTAAACTTAAAATCATTTATAA
4550308 AGTTATAAAAC
65 AGTTATAAAAC
4550319 CATTTGAAGT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
79 1 0.02
80 64 0.98
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.32
Consensus pattern (80 bp):
AAACATCAAATTATGATATGTATTAGACAAAAATGAAAAAAATTAAACTTAAAATCATTTATAAA
GTTATAAAACTACAT
Found at i:4550534 original size:170 final size:169
Alignment explanation
Indices: 4550244--4550596 Score: 437
Period size: 170 Copynumber: 2.1 Consensus size: 169
4550234 TAAACTACAT
4550244 AAACATCCAATTATGATCTGTATTAACCAAAAATGAAGAAAATTAAACTTAAAGTCATTTATAAA
1 AAACATCCAATTATGATCTGTATTAACCAAAAATGAAGAAAATTAAACTTAAAGTCATTTATAAA
* * * * *
4550309 GTTATAAAACCATTTGAAGTGAGTAACAAGGGTTTCAAAGGCATGAGTCACTATAAATGGACTTT
66 GTTATAAAACCATTTAAAGTAAGTAACAAGGCTTTCAAAGGCATGAATCACTAT-AATAGACTTT
* * *
4550374 TCTTGTTAATGGATGGCTTTTACT-TCACATTTCACAAGGC
130 TCTTATCAATGAATGGCTTTTA-TGTCACATTTCACAAGGC
* * * * * *
4550414 AAACATCCAATTATGATTTGTTTTAAGCAAAGATTAA-AAACATTCAACTTAGAA-TCATTTAT-
1 AAACATCCAATTATGATCTGTATTAACCAAAAATGAAGAAA-ATTAAACTTA-AAGTCATTTATA
* *
4550476 GAGATTATAAAACCATTTAAAGTAAGTAA-ATAGGCTTTCAAAGGCATGAATGACTATAATAGAC
64 AAG-TTATAAAACCATTTAAAGTAAGTAACA-AGGCTTTCAAAGGCATGAATCACTATAATAGAC
* * *
4550540 TTTTCTTATCAATGAATTGCTTTTATGTCACCTTTCTCAAGGC
127 TTTTCTTATCAATGAATGGCTTTTATGTCACATTTCACAAGGC
*
4550583 AAACATCTAATTAT
1 AAACATCCAATTAT
4550597 TGTGAAACCT
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
168 1 0.01
169 60 0.38
170 95 0.60
171 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (169 bp):
AAACATCCAATTATGATCTGTATTAACCAAAAATGAAGAAAATTAAACTTAAAGTCATTTATAAA
GTTATAAAACCATTTAAAGTAAGTAACAAGGCTTTCAAAGGCATGAATCACTATAATAGACTTTT
CTTATCAATGAATGGCTTTTATGTCACATTTCACAAGGC
Found at i:4555460 original size:20 final size:20
Alignment explanation
Indices: 4555435--4555480 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
4555425 TTTTGACCCC
4555435 ATTTGACTTATTAGAGTATA
1 ATTTGACTTATTAGAGTATA
* *
4555455 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTAGAGTATA
4555475 ATTTGA
1 ATTTGA
4555481 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTAGAGTATA
Found at i:4571467 original size:16 final size:17
Alignment explanation
Indices: 4571446--4571477 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4571436 CTAGGTAAGA
4571446 ATGCCACC-TAAGACAC
1 ATGCCACCTTAAGACAC
4571462 ATGCCACCTTAAGACA
1 ATGCCACCTTAAGACA
4571478 AGTGGGGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.34, G:0.12, T:0.16
Consensus pattern (17 bp):
ATGCCACCTTAAGACAC
Found at i:4575638 original size:170 final size:170
Alignment explanation
Indices: 4575257--4576121 Score: 755
Period size: 171 Copynumber: 5.1 Consensus size: 170
4575247 GGCTTTCAAT
* * *
4575257 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACATTTC-CTAAT
1 GGCATGAGTGACTATAAATGGACTTTTCTTGTCCATGGATGGCTTTCGCTTCACATTTCTC-AAT
* * * * * *
4575321 GTAAACGTGAAATTATGATTTGTTTTAACCAAAAGT-GAAAACAAATTTAATTCCAAATCATTTA
65 GTAAACATCAAATTATGATATGTTTTAACCAAAAATGGAAAA-AAA-TCAATTCAAAATCATTTA
* * * **
4575385 TAAAGTTATAAAACCACTTAAAGCGAGTAACTAGCCTTTCAAA
128 TAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
* * * * * * *
4575428 AGTATGAGTAACTATAAAGGGACATTTATTG-CCAATGGATGGCTTTCGCTTCACGTTTCTCAAT
1 GGCATGAGTGACTATAAATGGACTTTTCTTGTCC-ATGGATGGCTTTCGCTTCACATTTCTCAAT
** * * *
4575492 ACAAACATCAAATTATGATATGTTTTAACCTAGAATGGAAAAAAATCAATTCAAAATCATTTGTA
65 GTAAACATCAAATTATGATATGTTTTAACCAAAAATGGAAAAAAATCAATTCAAAATCATTTATA
* * * *
4575557 AAGGTATAAAACCACTTAAAGTGAGTTAGAAGGCTTTTGTA
130 AAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
* * * *
4575598 GGCATAAGTGACTATAAATGTACTTTTCTTGTCCATGGATGGCTTTCGCTTCACGTTTCT-AGTG
1 GGCATGAGTGACTATAAATGGACTTTTCTTGTCCATGGATGGCTTTCGCTTCACATTTCTCAAT-
* * * * *
4575662 GCAAACATCTAATTAT--TCTCTTTTCTACCAAAAATGTGAAAAAAATTCAACTT-AAAATCATT
65 GTAAACATCAAATTATGATATGTTTT-AACCAAAAATG-GAAAAAAA-TCAA-TTCAAAATCATT
* * ** * *
4575724 T-TTAAGATTATAACACCA-TGTAAAGTGAGTAACTTGGC-ATTCAA
126 TATAAAG-TTATAAAACCACT-TAAAGTGAGTAACAAGGCTTTTGAA
* * * * * * * *
4575768 GGGCGTGAGTGATTATAAATGGACTTTTCTCGTCAATGGATGGCTTTTGCTTAATATTTCCCAAT
1 -GGCATGAGTGACTATAAATGGACTTTTCTTGTCCATGGATGGCTTTCGCTTCACATTTCTCAAT
* ** * *
4575833 GTGAACATCAAATTATGATCTAT-TTTTAATGAAAAAT-GAATAAAACTTCAA-TCTAAAATTAT
65 GTAAACATCAAATTATGA--TATGTTTTAACCAAAAATGGAA-AAAA-ATCAATTC-AAAATCAT
* *
4575895 TTATAAAGTTATAAAACCACTTATAGCGAGTAACAAGGCTTTTGAA
125 TTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
* * * * *
4575941 GGCAAT-AGTGGCTATAAATGGACTTTTCTTGTGCAT---CGGCTTTCACTTCACCTTT-TCAAA
1 GGC-ATGAGTGACTATAAATGGACTTTTCTTGTCCATGGATGGCTTTCGCTTCACATTTCTC-AA
* * *
4576001 AGTAAACATCCAATTATGATATG-TTTAACCAAAAATGGAAAAAATTCAACTT-AAAATCATTTA
64 TGTAAACATCAAATTATGATATGTTTTAACCAAAAATGGAAAAAAATCAA-TTCAAAATCATTTA
* *
4576064 T-GAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAA
128 TAAAG-TTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
*
4576107 GACATGAGTGACTAT
1 GGCATGAGTGACTAT
4576122 NNNNNNNNNN
Statistics
Matches: 552, Mismatches: 110, Indels: 69
0.76 0.15 0.09
Matches are distributed among these distances:
165 4 0.01
166 61 0.11
167 18 0.03
168 11 0.02
169 41 0.07
170 130 0.24
171 185 0.34
172 79 0.14
173 17 0.03
174 4 0.01
175 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (170 bp):
GGCATGAGTGACTATAAATGGACTTTTCTTGTCCATGGATGGCTTTCGCTTCACATTTCTCAATG
TAAACATCAAATTATGATATGTTTTAACCAAAAATGGAAAAAAATCAATTCAAAATCATTTATAA
AGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
Found at i:4581289 original size:171 final size:170
Alignment explanation
Indices: 4580767--4584272 Score: 3391
Period size: 171 Copynumber: 20.6 Consensus size: 170
4580757 GTCGTCACAA
* * * * *
4580767 CATGAGTCACTATAAATGGGCTTTTCATGTCAATGGAT-ACATTTTGCTTCATGTTTCTCGATGC
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCTCGATGC
* * * * * * *
4580831 AAACATCAAATTATGATTTGTATTAACGAAAAATTAAAAAAATTTAATTTAAAATTATTTGTAAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAA
*
4580896 GTTATAAAACCA-TTAAAAGCAAGTAACAAGGCTTTTGAAGG
130 GTTATAAAACCACTT-AAAGCAAGTAACAAGGCTTTCGAAGG
* * * * * * ** * *
4580937 CGTGAGTGACTATAAATGAACTTTTTCTTGTCAACGGGTGGCATTCGTTTCACATTTCCCAATGC
1 CATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * * *
4581002 AAACATCAAATTATGATCTATTTTAACAAAAAATAAAAAAAAGAATTCAATTTAAAATAATTGAT
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAT--AAAAAA-AATTCAATTTAAAATCATTTAT
* * * *
4581067 AAAGTTATAAAATCACTAAAAGGAAGTAACAAGGTTTTCGAAGG
127 AAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * *
4581111 TATGAGTGACTATAAATGGACTTTTCTTGCCAAT-GATTGGCTTTTGCTTCACT-TTTCTAGATG
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCA-TGTTTCTCGATG
* * * * * * *
4581174 CAAACATCAAATTATGATCTATTTGAACCAACAATGGAAAAAAATTCATTTTCAAATCATTTCTA
64 CAAACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATTTAAAATCATTTATA
*
4581239 AAGTTATAAAACCACTTAAGGCAAGTAACAAGGCTTTCGAAGG
128 AAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * *
4581282 CATGAGTGACTATAAATAGACTTTTCTTATCAATCGATGGCTTTCGCTTCATGTTTCTCGATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * * *
4581347 AACATCAAATTATGATATGTTTTAACC-AAAATGCAAAACAATTCAATCTAAAATCATTTCTAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATTTAAAATCATTTATAAA
* ** * ** *
4581411 CTTATAAAACCACTTAAAGTGAGTAATAACACTTTCGATGG
130 GTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * * **
4581452 CATGACTAACTATGAATGGACTTTTCCTATCAATGGATGGCTTTCGCTTCACATTTCTCGATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * *
4581517 AACGTCCAATTATGATATGTTTTAACCAAAAATAAAAAAGAATTTCAATTTAAAATCATATAT-A
66 AACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAA-AA-TTCAATTTAAAATCATTTATAA
* * ** * **
4581581 AGATTATAAAACCATTTAAACCAAGTAAGTAGGCTTTTGACTG
129 AG-TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * * *
4581624 CATGAGAGACTATAAATGGACTTTTCTTGACAATGGATGGCTTTTGCTCCATGTTTCCCGAGGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * *
4581689 AACATCAAATTATGATCTGTTTTAACC------AAAAAAAATTGAA-TTAAAGTCATTTATAATG
66 AACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAAG
* **
4581747 TTGTAATTCCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
131 TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* ** * * * * * * **
4581787 TAAAAATGACTATAAATGGACTTTTCCTATTAATGGATGGATTTTGCTTCACATTTCT-GAATGC
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCG-ATGC
* * * * *
4581851 AAACATCAAATGATAATCTGTTTTAATCAAAAATAAAAAAAA-TCAACTTAAAATCATTTATAAG
65 AAACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAA
* * * *
4581915 GTTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCGAAGG
130 GTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * **
4581956 TAAGAGTGACAATAAAAGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTGCT-GATGC
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CTCGATGC
* * * *
4582020 AAACATCCAATTATGATATG-TTTAACCAAGAATAAAAAATAATTCAATTTAAAATCATTTTTAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAA-AATTCAATTTAAAATCATTTATAA
* ** * **
4582084 AGCTGCAAAACCACTAAAAGTGAGTAACAAGGCTTTCGAAGG
129 AGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * *
4582126 CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CTAATGC
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GATGC
* * * * * *
4582190 AAAGATCCAACTATGATCTGTTTTAATCAAAAATGAAAGAAAAATTCAATTTAAAATCACTTGTA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAT-AAA-AAAAATTCAATTTAAAATCATTTATA
** * * *
4582255 AAACTATAAAACCATTTAAAAGCAAGCAACAAGGCTTTCAAAGG
128 AAGTTATAAAACCACTT-AAAGCAAGTAACAAGGCTTTCGAAGG
* * * *
4582299 CATGAGTGACTACAAATGGACATTTCTTGTCAATGGATGGCTTTAGCTTCATGTTGC-CTGATGC
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GATGC
* ** * * *
4582363 AAACATC-AATTATGATTTGTTTCGACCAAAAATAGAAAAAA-TCAATTTGAAATCATGTATAAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAA
* * * *
4582426 GTGATCAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGG
130 GTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * * * * * * *
4582467 CATGAGTTAATATAAGTGCACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTTTTGATTGG
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGA-TGC
* * * * * * *
4582532 AAAAATAAAATTATGATATGGTTTAACCAAAAATGAAAAAAAATT-GATATAAAATCATATATAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATTTAAAATCATTTATAA
* ** * *
4582596 AGTTATAAAACCACTAAAAGTGAGTAACAAGACTTCCGAAGG
129 AGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * * *
4582638 CATGAGAGATTATAAATGAACTTTTCATGTCAATGAATGGCTTTCGCTTCATGTTTCTCGATTCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * *
4582703 AATATCCAATTATGATCTGTTTTAA-C------AAAAAAAA-TCAATTTAAAATCATTTGTAAGG
66 AACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAAG
*
4582760 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGG
131 TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * **
4582800 CATGAGTGACTTATAAATGGATTTTTCTTATCAATGGATGGCTTTTGTTTCCCGTTTCTCGATGC
1 CATGAGTGAC-TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * * *
4582865 AAACATCAAATTATGATATGTTTTAACCAAAAATGAAATAAAAAATCAGTTTAAAATCATTTGTA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAT-AAA-AAAAATTCAATTTAAAATCATTTATA
** * * **
4582930 AAGGCATTAAGCCACTTAAAGTGAGTAACAAGGCTTTC-AATGG
128 AAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAA-GG
* * * *
4582973 CATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCTTGTTTCCCCATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * * * **
4583038 AACATCCAATTATGATTTGGTTTAACAAAAAATGAAAACAAATTCAATTTAATTTCATTTATAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATTTAAAATCATTTATAAA
* * ** * *
4583103 ATTATAAAATCGTTTAAAGAAAGTGACAAGGCTTTCGAAGG
130 GTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * ** * * * *
4583144 TAAT-AATGACTATAAATGGACTTTTCTTGTCAATGGATGACTATCATTTCACGTTTATTGATGT
1 -CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * ** * * * * *
4583208 AAACATAAAACTAAAATCTGATTGAGCTAAAAATAAAAAAAAATTCAATTTAAAATCATTTTTAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATTTAAAATCATTTATAA
* * * * * * * *
4583273 TGTTACAAAATCGCTAAAAGCAAGTAACATGGCTTTTGAAGA
129 AGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * * * * * * *
4583315 CATGACTGACAATAAATGGTCTTTTCTTGACAGTGGATGGCTTTTGCTTTATGTTTCCCAATGTA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * * * *
4583380 AACAACAAATTGTGATATGTTTTAAGCAAAAATTAAAAAAATTCAATTTAAAAACATTTATAAAG
66 AACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAAG
** *
4583445 TTATAAAACCA-TTAAAAGTGAGTAACTAA-GCTTTTTGAAGG
131 TTATAAAACCACTT-AAAGCAAGTAAC-AAGGC-TTTCGAAGG
* * * *
4583486 CATGAGTGACTACAAATGGACTTTTATTGTCAATGGATGGCTTTCGCTTTATGTTTCTTGATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * * * *
4583551 AACATCAAATTATGTTATGTTTTAACCACAAATGAACAAAAATTCAATTTAAAATAATTGATAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATTTAAAATCATTTATAAA
* *
4583616 GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGGAGG
130 GTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * * *
4583657 CATGAGTGACTATGAATGGACTTTTCTTCTTAATGGATGGCTTTCGCTTCATGTTTCCCAATG-A
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * *
4583721 GAACATCAAATTATGATCTATTTTGACCAAAAATGAAAAAACAATT-AACTTAAAATCATATAT-
66 -AACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAAAA-AATTCAATTTAAAATCATTTATA
* * * *
4583784 AAGATTACAAAACCATTTAACGCAAGTAACAAAGCTTTCGAAGG
128 AAG-TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* ** * * * *
4583828 CATGACTGACTGCAAATTGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTGCCCGATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * *
4583893 AACATCTAATTATGATTTGTTTGAACCAAAAATAAAAAAAATTCAATTTGAAATCATTTATAAAG
66 AACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAAG
* * * * *
4583958 TGATCAAACCACTTAAAGCGAGTAACAAGGCTTTTGGAGG
131 TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * * *** * * * ** *
4583998 CATGAGTGAGTATAAATGCACTTTTCTTCTCAGCAGATAGTTTTTGCTTCACATTTCTAGATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* * * * *
4584063 AAAATAAAATTATGATCTGGTTTAACCAAAAATGAAAAGAAAATT-GATGTAAAATCATTTATAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAT-AAAA-AAAATTCAATTTAAAATCATTTATAA
* * * *
4584127 AGTTATAAAACCAGTTAAAGAAAGTAACAAGTCTTTAGAAGG
129 AGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
* * *
4584169 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCA
1 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
* *
4584234 AACATCAAATTA-GAATCTATTTTAACCAAAACTAAAAAA
66 AACATCAAATTATG-ATCTGTTTTAACCAAAAATAAAAAA
4584273 TTATGATCTG
Statistics
Matches: 2711, Mismatches: 557, Indels: 137
0.80 0.16 0.04
Matches are distributed among these distances:
161 1 0.00
162 69 0.03
163 181 0.07
164 7 0.00
165 2 0.00
166 6 0.00
168 92 0.03
169 170 0.06
170 528 0.19
171 1019 0.38
172 343 0.13
173 219 0.08
174 73 0.03
175 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (170 bp):
CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCA
AACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTTAAAATCATTTATAAAG
TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGG
Found at i:4584274 original size:30 final size:31
Alignment explanation
Indices: 4584240--4584303 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
4584230 TGCAAACATC
*
4584240 AAATTA-GAATCTATTTTAACCAAAACT-AAA
1 AAATTATG-ATCTATTTTAACCAAAAATGAAA
* *
4584270 AAATTATGATCTGTTTTAGCCAAAAATGAAA
1 AAATTATGATCTATTTTAACCAAAAATGAAA
4584301 AAA
1 AAA
4584304 ACTTTAATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.52, C:0.11, G:0.08, T:0.30
Consensus pattern (31 bp):
AAATTATGATCTATTTTAACCAAAAATGAAA
Found at i:4587721 original size:42 final size:42
Alignment explanation
Indices: 4587661--4587779 Score: 150
Period size: 42 Copynumber: 2.8 Consensus size: 42
4587651 CATCTCATGT
* ** *
4587661 GCAACGGCTTATGCGCACTTCCACTCGCACATAGCCGTGTTA
1 GCAACGGCTTATGTGCACTTCCACTCGCACATAGCCAAGTCA
* * *
4587703 GCAACGGCTTATGTGCACTCCCAGTCCCACATAGCCAAGTCA
1 GCAACGGCTTATGTGCACTTCCACTCGCACATAGCCAAGTCA
*
4587745 GCAACGGCTTATGTGCAC-TCCTACTCGCATATAGC
1 GCAACGGCTTATGTGCACTTCC-ACTCGCACATAGC
4587780 TGGGTATACA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 2 0.03
42 63 0.97
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.23
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTTCCACTCGCACATAGCCAAGTCA
Found at i:4598535 original size:180 final size:179
Alignment explanation
Indices: 4598233--4598592 Score: 693
Period size: 180 Copynumber: 2.0 Consensus size: 179
4598223 ATGGGACAAT
4598233 TTAGAGCTAAAATGGAGCGCGTTAGCAATTTATCCGGTAAAGTGCCAAAAATAGGTTAATACCGT
1 TTAGAGCTAAAATGGAGCGCGTTAGCAATTTATCCGGTAAAGTGCCAAAAATAGGTTAATACCGT
4598298 GTTTAAGCCGTTTTAGGCTATTGCATTTCATACCATGCATTAGTATAGGATTTAAGTCAATTATA
66 GTTTAAGCCGTTTTAGGCTATTGCATTTCATACCATGCATTAGTATAGGATTTAAGTCAATTATA
* *
4598363 TAGTGATTTAGCATCAATGTGGTGAATTGTGTAATTTTTGCAATGTGTC
131 TAGTGATTTAGCATCAATGAGGTGAATGGTGTAATTTTTGCAATGTGTC
4598412 NTTAGAGCTAAAATGGAGCGCGTTAGCAATTTATCCGGTAAAGTGCCAAAAATAGGTTAATACCG
1 -TTAGAGCTAAAATGGAGCGCGTTAGCAATTTATCCGGTAAAGTGCCAAAAATAGGTTAATACCG
4598477 TGTTTAAGCCGTTTTAGGCTATTGCATTTCATACCATGCATTAGTATAGGATTTAAGTCAATTAT
65 TGTTTAAGCCGTTTTAGGCTATTGCATTTCATACCATGCATTAGTATAGGATTTAAGTCAATTAT
4598542 ATAGTGATTTAGCATCAATGAGGTGAATGGTGTAATTTTTGCAATGTGTC
130 ATAGTGATTTAGCATCAATGAGGTGAATGGTGTAATTTTTGCAATGTGTC
4598592 T
1 T
4598593 AGGAGGAAAG
Statistics
Matches: 178, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
179 1 0.01
180 177 0.99
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.35
Consensus pattern (179 bp):
TTAGAGCTAAAATGGAGCGCGTTAGCAATTTATCCGGTAAAGTGCCAAAAATAGGTTAATACCGT
GTTTAAGCCGTTTTAGGCTATTGCATTTCATACCATGCATTAGTATAGGATTTAAGTCAATTATA
TAGTGATTTAGCATCAATGAGGTGAATGGTGTAATTTTTGCAATGTGTC
Found at i:4600105 original size:42 final size:42
Alignment explanation
Indices: 4600048--4600180 Score: 173
Period size: 42 Copynumber: 3.1 Consensus size: 42
4600038 TTATGTGATA
*
4600048 ATGATGACCCAGCTATGTGCGTGTGGGACTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGCGTGTGGGAATGCACATGAGCTG
*
4600090 ATGATGACCCAGCTATGTGCG-GTGTGGAGTGCAC-TGAGCTG
1 ATGATGACCCAGCTATGTGCGTGTG-GGAATGCACATGAGCTG
* *
4600131 ATGATGACCTAGCTATGTTCAAGTG-GGGAATGCATCATGAGCTG
1 ATGATGACCCAGCTATGTGC--GTGTGGGAATGCA-CATGAGCTG
4600175 ATGATG
1 ATGATG
4600181 GTGGGATGGT
Statistics
Matches: 81, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
41 28 0.35
42 36 0.44
43 3 0.04
44 14 0.17
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (42 bp):
ATGATGACCCAGCTATGTGCGTGTGGGAATGCACATGAGCTG
Found at i:4600341 original size:42 final size:41
Alignment explanation
Indices: 4600284--4600457 Score: 197
Period size: 42 Copynumber: 4.1 Consensus size: 41
4600274 TTATGTGATA
*
4600284 ATGATGACCCAGCTATGTGCTTGTGGGACTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGC-TGTGGGAGTGCACATGAGCTG
*
4600326 ATGATGACCCAGCTATGTGCGTGTGGGAGTGCACATGAGTTG
1 ATGATGACCCAGCTATGTGC-TGTGGGAGTGCACATGAGCTG
** * *
4600368 ATGATGACCCAATTATGTGCGGTGTGGAGTGCAC-TGAGCTA
1 ATGATGACCCAGCTATGTGCTGTG-GGAGTGCACATGAGCTG
* * * * *
4600409 ATGATGACCTAGCTATGTTCAAGTGGGGAATGCACATGAGTTG
1 ATGATGACCCAGCTATGTGC-TGT-GGGAGTGCACATGAGCTG
4600452 ATGATG
1 ATGATG
4600458 GTGGGATGGT
Statistics
Matches: 112, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
41 24 0.21
42 76 0.68
43 12 0.11
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (41 bp):
ATGATGACCCAGCTATGTGCTGTGGGAGTGCACATGAGCTG
Found at i:4600443 original size:84 final size:84
Alignment explanation
Indices: 4600284--4600457 Score: 228
Period size: 84 Copynumber: 2.1 Consensus size: 84
4600274 TTATGTGATA
* * *
4600284 ATGATGACCCAGCTATGTGCTTGTGGGACTGCACATGAGCTGATGATGACCCAGCTATGTGCGTG
1 ATGATGACCCAACTATGTGCGTGTGGGACTGCACATGAGCTAATGATGACCCAGCTATGTGCGTG
*
4600349 TGGGAGTGCACATGAGTTG
66 TGGGAATGCACATGAGTTG
* * * *
4600368 ATGATGACCCAATTATGTGCG-GTGTGGAGTGCAC-TGAGCTAATGATGACCTAGCTATGTTCAA
1 ATGATGACCCAACTATGTGCGTGTG-GGACTGCACATGAGCTAATGATGACCCAGCTATGTGC--
4600431 GTG-GGGAATGCACATGAGTTG
63 GTGTGGGAATGCACATGAGTTG
4600452 ATGATG
1 ATGATG
4600458 GTGGGATGGT
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
83 27 0.34
84 49 0.62
85 3 0.04
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (84 bp):
ATGATGACCCAACTATGTGCGTGTGGGACTGCACATGAGCTAATGATGACCCAGCTATGTGCGTG
TGGGAATGCACATGAGTTG
Found at i:4601978 original size:172 final size:170
Alignment explanation
Indices: 4601683--4602183 Score: 523
Period size: 170 Copynumber: 2.9 Consensus size: 170
4601673 GTCGTGATAT
* *
4601683 TAAGATTATAAAACCATTTAAAGCAAGTAACT-AGGCTTTCAAAGGCATGAGTGACTATAAATGG
1 TAAGATTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCAAAGGCATGAGTAACTATAAATGG
* * * * *
4601747 ACTTTTCTTATAAATGGATGGCTTTTACTTTATGTTTC-CTAATGCTAACAACAAATTATGATAG
65 ACTTTTCTTATTAATGGATGGCTTTCACTTCAAGTTTCTC-AATGCAAACAACAAATTATGATAG
* *
4601811 GTTTTAACTTAA-AATGAAAATGATTTTGAATTTAAAACCATTTA
129 GTTTTAAC-TAATAATGAAAA--ATATTCAATTTAAAACCATTTA
* * * *
4601855 TAAGATTATAAAACCATTTAAAGCGAGTAATAAGGGTTACAAAGGCATGAGTCACTGTAAATGGA
1 TAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTAACTATAAATGGA
* * * * * * **
4601920 CTTTTCTTGTTAATGGA-GGACTTTCGCTTCACGTTTCTCGATGCAAACATCCAATTATGATTTG
66 CTTTTCTTATTAATGGATGG-CTTTCACTTCAAGTTTCTCAATGCAAACAACAAATTATGATAGG
* **
4601984 TTTTAACTAATAATGAAAAATATTCATTTTAAAATTATTTA
130 TTTTAACTAATAATGAAAAATATTCAATTTAAAACCATTTA
* ** * * **
4602025 TAA-ATTTATTAAACCGCTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTAACTATAAATTT
1 TAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTAACTATAAATGG
* * * **
4602089 ACTTTTCTTATTAATGGATGGCTTTCTCTTCAAGTTT-TCCATTGCAAACAATAAATTATGATCT
65 ACTTTTCTTATTAATGGATGGCTTTCACTTCAAGTTTCT-CAATGCAAACAACAAATTATGATAG
* * *
4602153 GTTTT-ACAAAAAATGAAAAAAATT-AATTTAA
129 GTTTTAACTAATAATGAAAAATATTCAATTTAA
4602184 TTCAAAGGCA
Statistics
Matches: 276, Mismatches: 46, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
168 6 0.02
169 18 0.07
170 123 0.45
171 8 0.03
172 120 0.43
173 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.36
Consensus pattern (170 bp):
TAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTAACTATAAATGGA
CTTTTCTTATTAATGGATGGCTTTCACTTCAAGTTTCTCAATGCAAACAACAAATTATGATAGGT
TTTAACTAATAATGAAAAATATTCAATTTAAAACCATTTA
Found at i:4602440 original size:293 final size:294
Alignment explanation
Indices: 4601894--4602482 Score: 685
Period size: 293 Copynumber: 2.0 Consensus size: 294
4601884 ATAAGGGTTA
* * * * *
4601894 CAAAGGCATGAGTCACTGTAAATGGACTTTTCTTGTTAATGGAGGACTTTCGCTTCACGTTTCTC
1 CAAAGGCATGACTCACTGTAAATGGAATTTTCTTGTCAATGGAGGACTTTCACTTCACGTTTCCC
* * * * * * * ** **
4601959 GATGCAAACATCCAATTATGATTTGTTTTAACTAATAATGAAAAATATTCATTTTAAAATTATTT
66 AATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAAAAATTCAACTTAAAACCATTT
* * * * * **
4602024 ATAAATTTATTAAACCGCTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTAACTATAAATTT
131 ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGCAACTATAAATGC
* * *
4602089 ACTTTTCTTATTAATGGATGGCTTTCTCTTCAAGTTTTCCATTGCAAACAATAAATTATGATCTG
196 ACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTTCCAATGCAAACAATAAATTATGATCTG
4602154 TTTT-ACAAAAAATGAAAAAAATT-AATTT-AATT
261 TTTTAACAAAAAA-GAAAAAAATTCAATTTAAATT
* *
4602186 CAAAGGCATGACTGACT-TGAAATGGAATTGTT-TTGTCAATGGATGGA-TTTCACTTCATGTTT
1 CAAAGGCATGACTCACTGT-AAATGGAATT-TTCTTGTCAATGGA-GGACTTTCACTTCACGTTT
**
4602248 CCCAATGTGAACATCAAATTATGATCTATTTTAACCAAAAATGAAATAAAATTCAACTTAAAACC
63 CCCAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAA-AAAATTCAACTTAAAACC
* * * *
4602313 ATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTAAAGGCATGAGCGACTATAG
127 ATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGCAACTATAA
* *
4602378 ATGCACCTTTT-TTGTCAATGGATGGCTTTCGCTT-TA-TATTTCTCAATGCAAA-AATCAAATT
192 ATGCA-CTTTTCTTATCAATGGATGGCTTTCGCTTCAAGT-TTTC-CAATGCAAACAAT-AAATT
* *
4602439 ATGATTTGTTTTAACCAAAAAGAAAAAAATTCAATTTAAATT
253 ATGATCTGTTTTAACAAAAAAGAAAAAAATTCAATTTAAATT
4602481 CA
1 CA
4602483 CTTATAAAGT
Statistics
Matches: 248, Mismatches: 38, Indels: 19
0.81 0.12 0.06
Matches are distributed among these distances:
291 2 0.01
292 92 0.37
293 131 0.53
294 17 0.07
295 6 0.02
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (294 bp):
CAAAGGCATGACTCACTGTAAATGGAATTTTCTTGTCAATGGAGGACTTTCACTTCACGTTTCCC
AATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGAAAAAAATTCAACTTAAAACCATTT
ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGCAACTATAAATGC
ACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTTCCAATGCAAACAATAAATTATGATCTG
TTTTAACAAAAAAGAAAAAAATTCAATTTAAATT
Found at i:4604751 original size:35 final size:35
Alignment explanation
Indices: 4604688--4604758 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
4604678 CTTTAGCTAT
*
4604688 TGATTTTGAAGGCTGGAAAGTGAAGTTTTGGTTGC
1 TGATTTTGAAGGCTGGAAAGTGAAGTTTTAGTTGC
* **
4604723 TGATTTTGAAGG-TTGAAAGGTGCGGTTTTAGTTGC
1 TGATTTTGAAGGCTGGAAA-GTGAAGTTTTAGTTGC
4604758 T
1 T
4604759 AATCTTTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 5 0.16
35 26 0.84
ACGTcount: A:0.21, C:0.06, G:0.34, T:0.39
Consensus pattern (35 bp):
TGATTTTGAAGGCTGGAAAGTGAAGTTTTAGTTGC
Found at i:4604848 original size:33 final size:34
Alignment explanation
Indices: 4604777--4604854 Score: 97
Period size: 33 Copynumber: 2.3 Consensus size: 34
4604767 TAGTTTTGGT
* *
4604777 TGCTGATTTTTGAAGGGAAAGTAGAGCAGCTTAGC
1 TGCTGA-TTTTGAAGGGAAAGTAAAGCAGCTTAAC
4604812 TGCTGATTTTG-AGGAGAAA-TAAAGCAGCTTAAC
1 TGCTGATTTTGAAGG-GAAAGTAAAGCAGCTTAAC
*
4604845 TGCTAATTTT
1 TGCTGATTTT
4604855 TGTGTGGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
33 24 0.62
34 9 0.23
35 6 0.15
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.32
Consensus pattern (34 bp):
TGCTGATTTTGAAGGGAAAGTAAAGCAGCTTAAC
Found at i:4605124 original size:25 final size:25
Alignment explanation
Indices: 4605070--4605126 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
4605060 ATATGCATAT
4605070 AAATGGGCATGGCCCAATAAGGAAAG
1 AAATGGGCATGGCCCAATAA-GAAAG
4605096 -AATGGGCATGGCCCAATTAA-AAAG
1 AAATGGGCATGGCCCAA-TAAGAAAG
4605120 AAATGGG
1 AAATGGG
4605127 AGAAGTCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.14
25 22 0.76
26 3 0.10
ACGTcount: A:0.42, C:0.14, G:0.30, T:0.14
Consensus pattern (25 bp):
AAATGGGCATGGCCCAATAAGAAAG
Found at i:4607361 original size:171 final size:170
Alignment explanation
Indices: 4607092--4607408 Score: 415
Period size: 171 Copynumber: 1.9 Consensus size: 170
4607082 CATTTTAAGT
* * * * *
4607092 GAGTACCAAGGCTTTCCAAGGCTTGAGTGACTATAAGTGGAATTTTCTTGTCAATGGATAGCTTT
1 GAGTAACAAGGCTTTCCAAGGCATGAGTGACTATAAGTAGAACTTTCTTGTCAATGAATAGCTTT
* ** * * *
4607157 TGATTCATGTTTCTTGATGCAAATAAAAAATTATGATAT-ATTTTCACCAAAAATGAAAAAAAAA
66 TGATTCAAGTTTCCCGATGCAAACAAAAAATTATGATATGA-GTTAACCAAAAATG--AAAAAAA
*
4607221 TTCAATTTAAAATCATTTATAAGATTATAAAACTATTTAAAAC
128 TTCAATTTAAAACCATTTATAAGATTATAAAACTATTTAAAAC
* * *
4607264 GAGTAACAAGGCTTTCGAAGGCATGAGTGACTTTAAGTAG-ACTTTCTTGTCAATGAATGGCTTT
1 GAGTAACAAGGCTTTCCAAGGCATGAGTGACTATAAGTAGAACTTTCTTGTCAATGAATAGCTTT
* * *
4607328 TG-CTCTAAGTTTCCCGATGCAAACAACAAATTATGATTTGAGTTAACCAAAAATGAAAAAAATT
66 TGATTC-AAGTTTCCCGATGCAAACAAAAAATTATGATATGAGTTAACCAAAAATGAAAAAAATT
4607392 CAATTTAAAACCATTTA
130 CAATTTAAAACCATTTA
4607409 AAGCGAGTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
169 25 0.20
170 2 0.02
171 62 0.50
172 36 0.29
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (170 bp):
GAGTAACAAGGCTTTCCAAGGCATGAGTGACTATAAGTAGAACTTTCTTGTCAATGAATAGCTTT
TGATTCAAGTTTCCCGATGCAAACAAAAAATTATGATATGAGTTAACCAAAAATGAAAAAAATTC
AATTTAAAACCATTTATAAGATTATAAAACTATTTAAAAC
Found at i:4607529 original size:150 final size:149
Alignment explanation
Indices: 4607248--4607530 Score: 349
Period size: 150 Copynumber: 1.9 Consensus size: 149
4607238 TATAAGATTA
* * * *
4607248 TAAAACTATTTAAAACGAGTAACAAGGCTTTCGAAGGCATGAGTGACTTTAAGTAGACTTTCTTG
1 TAAAACCATTTAAAACGAGTAACAAGGCTTTCAAAGGCATGAGTGACTGTAAATAGACTTTCTTG
* * *
4607313 TCAATGAATGGCTTTTGCTCTAAGTTTCCCGATGCAAACAACAAATTATGATTTGAGTTAACCAA
66 TCAATGAATGGCTTTTGCTCTAAGTTTCCCAATGAAAACAACAAATTATGATTCGAGTTAACCAA
4607378 AAATGAAAAAAATTCAATT
131 AAATGAAAAAAATTCAATT
* * * *
4607397 TAAAACCATTTAAAGCGAGTAACTAGGCTTTTAAAGTG-ATGAGTGACTGTAAATGGACTTTTCT
1 TAAAACCATTTAAAACGAGTAACAAGGCTTTCAAAG-GCATGAGTGACTGTAAATAGAC-TTTCT
* * * * *
4607461 TGTCAATGGATGG-TTTTCGCT-TCATGTTTCTCAATGAAAACATCAAATTATGA-TCGATTTTA
64 TGTCAATGAATGGCTTTT-GCTCT-AAGTTTCCCAATGAAAACAACAAATTATGATTCGA-GTTA
4607523 ACCAAAAA
126 ACCAAAAA
4607531 AAGAAAATAA
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
149 56 0.50
150 57 0.50
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (149 bp):
TAAAACCATTTAAAACGAGTAACAAGGCTTTCAAAGGCATGAGTGACTGTAAATAGACTTTCTTG
TCAATGAATGGCTTTTGCTCTAAGTTTCCCAATGAAAACAACAAATTATGATTCGAGTTAACCAA
AAATGAAAAAAATTCAATT
Found at i:4607768 original size:81 final size:80
Alignment explanation
Indices: 4607633--4607793 Score: 313
Period size: 81 Copynumber: 2.0 Consensus size: 80
4607623 GACTTTTCTT
4607633 TTCAATGGATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAATTCTGATATGTTTTAACAA
1 TTCAATGGATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAATTCTGATATGTTTTAACAA
4607698 AAAAAATTCAATTTA
66 AAAAAATTCAATTTA
4607713 NTTCAATGGATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAATTCTGATATGTTTTAACA
1 -TTCAATGGATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAATTCTGATATGTTTTAACA
4607778 AAAAAAATTCAATTTA
65 AAAAAAATTCAATTTA
4607794 AAATCATTTA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (80 bp):
TTCAATGGATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAATTCTGATATGTTTTAACAA
AAAAAATTCAATTTA
Found at i:4608051 original size:171 final size:168
Alignment explanation
Indices: 4607715--4608229 Score: 516
Period size: 171 Copynumber: 3.1 Consensus size: 168
4607705 TCAATTTANT
** *
4607715 TCAATGGATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAATTCTG-ATATGTTTTAA-C-
1 TCAATGGATGGCTTTCACTTCACGTTTCTCAATGCAAACATCAAATTGTGTATA-GTTTTAACCA
*** * *
4607777 ----AAAAAAAATTCAATTTAAAATCATTTATAAAGTTGTAAAATTGCTTAAAGCGAGTAACAGG
65 AAAAAAAAAAAATTCAATTTAAAATCATTTATAAAGTT-TAAAAGAACTTAAAGTGAGTAACAAG
* * * * * *
4607838 GCTTTTGAAGGTATAAGGGACTATAAATAGACTTTGCTTG
129 GCTTTCGAAGGCATGAGTGACTATAAATAGGCTTTTCTTG
*
4607878 TCAATGGATGGCTTTCACTTCACGTTTCTCAATGCAAACATCAAATTGTGTCTAG-TTTAACCAA
1 TCAATGGATGGCTTTCACTTCACGTTTCTCAATGCAAACATCAAATTGTGTATAGTTTTAACCAA
* * *
4607942 AAGAAAAAGGAAAATTCAATTTGAAATCATTTATAAAGTTATAAAAGAACTTAAATTGAGGT-CC
66 AA-AAAAA--AAAATTCAATTTAAAATCATTTATAAAGTT-TAAAAGAACTTAAAGTGA-GTAAC
4608006 AAGGCTTTCGAAGGCATGAGTGACTATAAATAGGCTTTTCTTG
126 AAGGCTTTCGAAGGCATGAGTGACTATAAATAGGCTTTTCTTG
* * * * * * *
4608049 TCAATAGATGCCTTTCTCTTCACGTCTCCCGATGCAAACATCAAATTGT-TATTGTTTTAACCAA
1 TCAATGGATGGCTTTCACTTCACGTTTCTCAATGCAAACATCAAATTGTGTATAGTTTTAACCAA
* * * * * * *
4608113 GAACAAAAAAAAGTTTAATTTCAAATCATTTAT-AAGTTTATAAAGCCATTTAAAGTAAATAACA
66 -AA-AAAAAAAAATTCAATTTAAAATCATTTATAAAGTTTA-AAAG-AACTTAAAGTGAGTAACA
* * *
4608177 AGGC-TTCGATGGCATGAGTGTCTATAAAT-GGAATTTTCTTG
127 AGGCTTTCGAAGGCATGAGTGACTATAAATAGG-CTTTTCTTG
4608218 TCAATGGATGGC
1 TCAATGGATGGC
4608230 ATCTACTTTA
Statistics
Matches: 293, Mismatches: 42, Indels: 28
0.81 0.12 0.08
Matches are distributed among these distances:
162 5 0.02
163 49 0.17
164 2 0.01
168 4 0.01
169 55 0.19
170 38 0.13
171 131 0.45
172 9 0.03
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (168 bp):
TCAATGGATGGCTTTCACTTCACGTTTCTCAATGCAAACATCAAATTGTGTATAGTTTTAACCAA
AAAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTTAAAAGAACTTAAAGTGAGTAACAAGGC
TTTCGAAGGCATGAGTGACTATAAATAGGCTTTTCTTG
Found at i:4608796 original size:171 final size:170
Alignment explanation
Indices: 4608467--4609849 Score: 1069
Period size: 170 Copynumber: 8.1 Consensus size: 170
4608457 CAATTCGAGT
* * * * * *
4608467 TAAAACCATTTAAAGCAAATAACTAGACTTTTGAAA-GCATGAGCGACTATAAATGGA-TATTTC
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTT-AAAGGCATGAGTGACTATAAATGGACT-TTTC
* * * * *
4608530 TTGTCAATGGATGTCTTTT-GCTTCATGTTTCCTGATGAAAACATCAAATTGTGATA-GTTTTAA
64 TTGTCAATGGATGGCTTTTAG-TTCACGTTTCC-AATGCAAACATCAAATTATGATATGTTTTAA
* * * *
4608593 CCAAAAATGTCAA-AACATTCAACTTAAAATCATTAATATGATTA
127 CCAAAAATG-AAAGAAAATTCAATTTAAAATCATTAATAAGATTA
* *
4608637 TAAAACC-CTCTAAAGCGAGTAACAATGCTTTTAAAGGCATGATTGACTATAAATGGTA-TTTTC
1 TAAAACCACT-TAAAGCGAGTAACAAGGCTTTTAAAGGCATGAGTGACTATAAATGG-ACTTTTC
* * * *
4608700 TAGTCAATGGATGGCTTTTAGTTCACGTTTCCAAATGCAAATATGAAATTATGATATGTTTCAAC
64 TTGTCAATGGATGGCTTTTAGTTCACGTTTCC-AATGCAAACATCAAATTATGATATGTTTTAAC
* *
4608765 CAAAAATGAAAGAACATTCAATTTAAAATCATTTATAA-AGTTA
128 CAAAAATGAAAGAAAATTCAATTTAAAATCATTAATAAGA-TTA
* ** * * ** *
4608808 TAAAAGCCACTTAAAGTGAGT-ACTAAGGCTTTCGAAGGTATAACCGACTATAAATGTACTTTTC
1 TAAAA-CCACTTAAAGCGAGTAAC-AAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * * *
4608872 TTTTTAATGGATGGCTTTCATTTCACGTTTCTCAATGAAAACAACCAATTATGATTTGTTTTAAC
64 TTGTCAATGGATGGCTTTTAGTTCACGTTTC-CAATGCAAACATCAAATTATGATATGTTTTAAC
* *
4608937 C-AAAATGAAAGAAAATACAATTTAAAATCATTTAAAAAG-TTA
128 CAAAAATGAAAGAAAATTCAATTTAAAATCA-TTAATAAGATTA
* * *
4608979 TAAAACCACTTAATA-CGAGTAACAAGAC-TTTACGATGCATGAGTGACTATAAATGGACTTGTT
1 TAAAACCACTTAA-AGCGAGTAACAAGGCTTTTA-AAGGCATGAGTGACTATAAATGGACTT-TT
* ** *
4609042 -TTGCCAATGGATGGCTTTT-GCTTTGCTTTTCCTGAA-GCAAACATCAAATTATGATATGTTTT
63 CTTGTCAATGGATGGCTTTTAG-TTCACGTTTCC--AATGCAAACATCAAATTATGATATGTTTT
* ** * * * *
4609104 AACCCAAAACAAAAG-CAATTAAATTTAAATTCATTTATTAAG-TTA
125 AACCAAAAATGAAAGAAAATTCAATTTAAAATCA-TTAATAAGATTA
* ** * * *
4609149 TAAAACTACTTAAAGTAAGTAACAAGGCTTTCAAAGTCATGAGTGACTATAATTGGACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * *
4609214 GTCAATGGATGGC-TTTCGTTTCACGTTTCCTGATGCAAACATCAAATTATAATCTATTTTAACT
66 GTCAATGGATGGCTTTTAG-TTCACGTTTCC-AATGCAAACATCAAATTATGATATGTTTTAACC
* *
4609278 AAAAATGAAAGAAAATAT-AAGTTAAAATTCTTTACA-AAG-TTA
129 AAAAATGAAAGAAAAT-TCAATTTAAAA-TCATTA-ATAAGATTA
* * ** *
4609320 TAAAACCACTTGAAGTGAGT-ACACAGGCTTTCGAAGGCAT-ATGTGACTATAAATGGAATTTTC
1 TAAAACCACTTAAAGCGAGTAACA-AGGCTTTTAAAGGCATGA-GTGACTATAAATGGACTTTTC
* * * * **
4609383 TTGTCATTGGATGGCTTCTACTTCATGTTTCCCAATGCAAACAAAAAAATTATGACT-TGTTTTA
64 TTGTCAATGGATGGCTTTTAGTTCACGTTT-CCAATGCAAAC-ATCAAATTATGA-TATGTTTTA
* * * *
4609447 ACCAAGAACGAAAAAAATATTCAATTTAAAATTATGT-ATAAGATTA
126 ACCAAAAATGAAAGAAA-ATTCAATTTAAAATCAT-TAATAAGATTA
* * * * * *
4609493 TAAAACCATTTAATGCGAGTAACAAGGCTTTTGAAGGCATGAGTGACTACAAATAGACTTTTTTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * *
4609558 GTCAATGGATGGCTTTCACTTCATGTTTCTCAATGCAAACATCAAATTATGATATGTTTT-----
66 GTCAATGGATGGCTTTTAGTTCACGTTTC-CAATGCAAACATCAAATTATGATATGTTTTAACCA
* * *
4609618 --AATGAAA-AAACTAT-AATTTAGAATCATTTATAA-ACTTA
130 AAAATGAAAGAAAAT-TCAATTTAAAATCATTAATAAGA-TTA
* * * ** *
4609656 TCAAACCACTGAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * * *
4609721 GACAATGAATGGC-TTTCGCTTTACGTTCCCCAATGCAAACATCCAATTATGATCTGTTTTAACT
66 GTCAATGGATGGCTTTTAG-TTCACGTT-TCCAATGCAAACATCAAATTATGATATGTTTTAACC
*** ** * * *
4609785 AAAAATGGAAA-ATTTTTTGATTTAAAAACATTTATAAGATTC
129 AAAAAT-GAAAGAAAATTCAATTTAAAATCATTAATAAGATTA
* *
4609827 TAAAACCATTTAAAAGTGAGTAA
1 TAAAACCACTT-AAAGCGAGTAA
4609850 TGCGGCTTTC
Statistics
Matches: 972, Mismatches: 179, Indels: 122
0.76 0.14 0.10
Matches are distributed among these distances:
162 4 0.00
163 119 0.12
164 5 0.01
165 6 0.01
169 14 0.01
170 312 0.32
171 238 0.24
172 167 0.17
173 103 0.11
174 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
TAAAACCACTTAAAGCGAGTAACAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
GTCAATGGATGGCTTTTAGTTCACGTTTCCAATGCAAACATCAAATTATGATATGTTTTAACCAA
AAATGAAAGAAAATTCAATTTAAAATCATTAATAAGATTA
Found at i:4609436 original size:512 final size:505
Alignment explanation
Indices: 4608486--4609791 Score: 1414
Period size: 512 Copynumber: 2.6 Consensus size: 505
4608476 TTAAAGCAAA
* * * * *
4608486 TAACTAGACTTTTGAAAGCATGAGCGACTATAAATGGA-TATTTCTTGTCAATGGATGTCTTTTG
1 TAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACT-TTT-TTGTCAATGGATGGCTTTTG
* * *
4608550 CTTCATGTTTCCTGATGAAAACATCAAATTGTGATA-GTTTTAACCAAAAATGTCAAAACATTCA
64 CTTCATGTTTCCTGAAGCAAACATCAAATTATGATATGTTTTAACC-AAAA---CAAAACATT-A
* * * * * * *
4608614 ACTTAAAATCA-TTAATATGATTATAAAACCCTCTAAAGCGAGTAACAATGCTTTTAAAGGCATG
124 A-TTTAAATCATTTATTAAG-TTATAAAACACT-TAAAG-AAGTAACAAGGCTTTCAAAGGCATG
* * *
4608678 ATTGACTATAAATGGTA-TTTTCTAGTCAATGGATGGCTTTTAG-TTCACGTTTCCAAATGCAAA
185 AGTGACTATAAATGG-ACTTTTCTTGTCAATGGATGGC-TTTCGTTTCACGTTTCCAAATGCAAA
* * * * * * * *
4608741 TATGAAATTATGATATGTTTCAACCAAAAATGAAAGAACATTCAATTTAAAATCATTTATAAAGT
248 CATCAAATTATGATCTGTTTTAACTAAAAATGAAAGAAAATTCAAGTTAAAATCATTTACAAAGT
* * *
4608806 TATAAAAGCCACTTAAAGTGAGTACTAAGGCTTTCGAAGGTATAACCGACTATAAATGTACTTTT
313 TATAAAAGCCACTTAAAGTGAGTACTAAGGCTTTCGAAGGCATAACCGACTATAAATGGAATTTT
* * * * ** *
4608871 CTTTTTAATGGATGGCTTTCATTTCACGTTTCTCAATGAAAACAACCAATTATGATTTGTTTTAA
378 CTTGTCAATGGATGGCTTTCACTTCACGTTTCCCAATGAAAACAAAAAATTATGACTTGTTTTAA
* *
4608936 CCAA-AATGAAAGAAAATA-CAATTTAAAATCATTTAAAA-AGTTATAAAACCACTTAATACGAG
443 CCAAGAACGAAA-AAAATATCAATTTAAAATCATGTAAAAGA-TTATAAAACCACTTAATACGAG
* *
4608998 TAACAAGACTTTACG-ATGCATGAGTGACTATAAATGGACTTGTTTTGCCAATGGATGGCTTTTG
1 TAACAAGACTTT-CGAAGGCATGAGTGACTATAAATGGACTT-TTTTGTCAATGGATGGCTTTTG
4609062 CTT--TGCTTTTCCTGAAGCAAACATCAAATTATGATATGTTTTAACCCAAAACAAAAGCAATTA
64 CTTCATG--TTTCCTGAAGCAAACATCAAATTATGATATGTTTTAA-CCAAAACAAAA-C-ATT-
*
4609125 AATTTAAATTCATTTATTAAGTTATAAAACTACTTAAAGTAAGTAACAAGGCTTTCAAAGTCATG
123 AATTTAAA-TCATTTATTAAGTTATAAAAC-ACTTAAAG-AAGTAACAAGGCTTTCAAAGGCATG
* **
4609190 AGTGACTATAATTGGACTTTTCTTGTCAATGGATGGCTTTCGTTTCACGTTTCCTGATGCAAACA
185 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGTTTCACGTTTCCAAATGCAAACA
* *
4609255 TCAAATTATAATCTATTTTAACTAAAAATGAAAGAAAATAT-AAGTTAAAATTC-TTTACAAAGT
250 TCAAATTATGATCTGTTTTAACTAAAAATGAAAGAAAAT-TCAAGTTAAAA-TCATTTACAAAGT
* ***
4609318 TATAAAA-CCACTTGAAGTGAGTAC-ACAGGCTTTCGAAGGCATATGTGACTATAAATGGAATTT
313 TATAAAAGCCACTTAAAGTGAGTACTA-AGGCTTTCGAAGGCATAACCGACTATAAATGGAATTT
* * *
4609381 TCTTGTCATTGGATGGC-TTCTACTTCATGTTTCCCAATGCAAACAAAAAAATTATGACTTGTTT
377 TCTTGTCAATGGATGGCTTTC-ACTTCACGTTTCCCAATGAAAAC-AAAAAATTATGACTTGTTT
* * * *
4609445 TAACCAAGAACGAAAAAAATATTCAATTTAAAATTATGTATAAGATTATAAAACCATTTAATGCG
440 TAACCAAGAACGAAAAAAATA-TCAATTTAAAATCATGTAAAAGATTATAAAACCACTTAATACG
4609510 AG
504 AG
* * * * **
4609512 TAACAAGGCTTTTGAAGGCATGAGTGACTACAAATAGACTTTTTTTGTCAATGGATGGCTTTCAC
1 TAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGAC-TTTTTTGTCAATGGATGGCTTTTGC
* **
4609577 TTCATGTTT-CTCAATGCAAACATCAAATTATGATATGTTTTAA--TGAA-AAAAC-TATAATTT
65 TTCATGTTTCCTGAA-GCAAACATCAAATTATGATATGTTTTAACCAAAACAAAACAT-TAATTT
* * * * *
4609637 AGAATCATTTATAAACTTATCAAACCACTGAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTGA
128 A-AATCATTTATTAAGTTAT-AAAACACTTAAAGA-AGTAACAAGGCTTTCAAAGGCATGAGTGA
* * * * * *
4609702 CTATAAATGAACTTTTCTTGACAATGAATGGCTTTCGCTTT-ACGTTCCCCAATGCAAACATCCA
190 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-TTTCACGTTTCCAAATGCAAACATCAA
4609766 ATTATGATCTGTTTTAACTAAAAATG
254 ATTATGATCTGTTTTAACTAAAAATG
4609792 GAAAATTTTT
Statistics
Matches: 676, Mismatches: 85, Indels: 71
0.81 0.10 0.09
Matches are distributed among these distances:
506 1 0.00
507 131 0.19
508 10 0.01
509 1 0.00
510 15 0.02
511 93 0.14
512 259 0.38
513 37 0.05
514 124 0.18
515 3 0.00
516 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34
Consensus pattern (505 bp):
TAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTTTGTCAATGGATGGCTTTTGCT
TCATGTTTCCTGAAGCAAACATCAAATTATGATATGTTTTAACCAAAACAAAACATTAATTTAAA
TCATTTATTAAGTTATAAAACACTTAAAGAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAA
ATGGACTTTTCTTGTCAATGGATGGCTTTCGTTTCACGTTTCCAAATGCAAACATCAAATTATGA
TCTGTTTTAACTAAAAATGAAAGAAAATTCAAGTTAAAATCATTTACAAAGTTATAAAAGCCACT
TAAAGTGAGTACTAAGGCTTTCGAAGGCATAACCGACTATAAATGGAATTTTCTTGTCAATGGAT
GGCTTTCACTTCACGTTTCCCAATGAAAACAAAAAATTATGACTTGTTTTAACCAAGAACGAAAA
AAATATCAATTTAAAATCATGTAAAAGATTATAAAACCACTTAATACGAG
Found at i:4609922 original size:55 final size:56
Alignment explanation
Indices: 4609819--4609931 Score: 185
Period size: 55 Copynumber: 2.0 Consensus size: 56
4609809 AAAACATTTA
* *
4609819 TAAGATTCTAAAACCATTTAAAAGTGAGTAATGCGGCTTTCATGGTCATGAGTGAC
1 TAAGATTCTAAAACCATTTAAAAGTGAGTAATGAGGCTTTCATAGTCATGAGTGAC
4609875 TAAGATTCTAAAACCATTT-AAAGTGAGTAACT-AGGCTTTCATAGTCATGAGTGAC
1 TAAGATTCTAAAACCATTTAAAAGTGAGTAA-TGAGGCTTTCATAGTCATGAGTGAC
4609930 TA
1 TA
4609932 TAAATGGACT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
55 34 0.63
56 20 0.37
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (56 bp):
TAAGATTCTAAAACCATTTAAAAGTGAGTAATGAGGCTTTCATAGTCATGAGTGAC
Found at i:4610067 original size:227 final size:227
Alignment explanation
Indices: 4609658--4610068 Score: 546
Period size: 227 Copynumber: 1.8 Consensus size: 227
4609648 TAAACTTATC
4609658 AAACCACTGAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGA
1 AAACCACTGAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGA
* * *
4609723 CAATGAATGGCTTTCGCTTTACGTTCCCCAATGCAAACATCCAATTATGATCTGTTTTAACTAAA
66 CAATGAATGGCTTTCGCTTCACGTTCCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
*** * * * **
4609788 AATGGAAAATTTTTTGATTTAAAAACATTTATAAGATTCTAAAACCATTTAAAAGTGAGTAATGC
131 AATGGAAAATAAATTCAATTAAAAACATTGATAAGATTAAAAAACCATTTAAAAGTGAGTAATGC
4609853 GGCTTTCATGGTCATGAGTGACTAAGATTCTA
196 GGCTTTCATGGTCATGAGTGACTAAGATTCTA
* * * * * *
4609885 AAACCATTTAAAGTGAGTAACTAGGCTTTC-ATAGTCATGAGTGACTATAAATGGACTTTTCTT-
1 AAACCACTGAAAGAGAGTAACAAGGCTTTCGA-AGGCATGAGTGACTATAAATGAACTTTTCTTG
* * *
4609948 ATCAATGGATGGCTTTTGCTTCACGTTTCCCC-ATGCAAACATCAAATTATTATCTGTTTTAACC
65 A-CAATGAATGGCTTTCGCTTCACG-TTCCCCAATGCAAACATCAAATTATGATCTGTTTTAACC
4610012 AAAAAT-GAAAGA-AAATTCAATTAAAAATCATTGATAA-AGTTAAAAAACCATTTAAAA
128 AAAAATGGAAA-ATAAATTCAATTAAAAA-CATTGATAAGA-TTAAAAAACCATTTAAAA
4610069 CGAGTACCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
226 17 0.11
227 135 0.85
228 6 0.04
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (227 bp):
AAACCACTGAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGA
CAATGAATGGCTTTCGCTTCACGTTCCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
AATGGAAAATAAATTCAATTAAAAACATTGATAAGATTAAAAAACCATTTAAAAGTGAGTAATGC
GGCTTTCATGGTCATGAGTGACTAAGATTCTA
Found at i:4610216 original size:170 final size:171
Alignment explanation
Indices: 4609883--4610553 Score: 678
Period size: 170 Copynumber: 3.9 Consensus size: 171
4609873 ACTAAGATTC
* * * * * *
4609883 TAAAACCATTTAAAGTGAGTAACTAGGC-TTTCATAGTCATGAGTGACTATAAATGGACTTTTCT
1 TAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGACATGAGTGACTATAAATGGACTATTCT
* * *
4609947 TATCAATGGATGGCTTTTGCTTCACGTTTCCCCATGCAAACATCAAATTATTATCTGTTTTAACC
66 TATCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACC
* *
4610012 AAAAATGAAAGAAAATTCAATTAAAAATCATTGATAAAGTTA
131 AAAAATGAAA-AAAATTCAATTTAAAACCATTGATAAAGTTA
* * * * *
4610054 AAAAACCATTTAAAACGAGTACCAAGGCTTAT-AAAG-CATGAGTGACTAAAAATGGACTATTCT
1 TAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGACATGAGTGACTATAAATGGACTATTCT
* * ** *
4610117 TGTCAATGGATGGCTTTTGCTTCATGTTTCCTGATGCAAACAACAAATTATGATATGTTTTAACC
66 TATCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACC
*
4610182 AAAAATGAAAAAAATTTCTATTTAAAACCATTGAT-AAGATTA
131 AAAAATGAAAAAAA-TTCAATTTAAAACCATTGATAAAG-TTA
* * * *
4610224 TAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAG-CATTAATGATTGTAAATGGAC-ATTTC
1 TAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGACATGAGTGACTATAAATGGACTA-TTC
* ** * *
4610287 TTGTCAATGGATGGCTTTCACTTCACGTTTCCCAATGCAAACATGC-AATTATGATTTGTTTTAA
65 TTATCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAACA-ACAAATTATGATCTGTTTTAA
** * **
4610351 CC-AAAATGAAAAAAATTCAATTCGAAATCATTTTTAAAGTTA
129 CCAAAAATGAAAAAAATTCAATTTAAAACCATTGATAAAGTTA
* * * * * * * * *
4610393 TAAAATCACTTATAGTGAGTAATAAGGCTTTT-GAAGACTTGCA-TGACTAGAAATGGACTTTTC
1 TAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGACATG-AGTGACTATAAATGGACTATTC
* * * * ** ** * * * *
4610456 TTATTAATGAATGGCTTCTGCTTCAAGTTTTTCAATGGTAACAACAAATTTTAATCTATTTTAAT
65 TTATCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAAC
* *
4610521 CAAAAATGAAAACAATTTGAATTTAAAACCATT
130 CAAAAATGAAAA-AAATTCAATTTAAAACCATT
4610554 TAAAGCAAGT
Statistics
Matches: 412, Mismatches: 75, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
168 4 0.01
169 115 0.28
170 169 0.41
171 121 0.29
172 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
TAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGACATGAGTGACTATAAATGGACTATTCT
TATCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACC
AAAAATGAAAAAAATTCAATTTAAAACCATTGATAAAGTTA
Found at i:4611313 original size:342 final size:341
Alignment explanation
Indices: 4610585--4611370 Score: 828
Period size: 342 Copynumber: 2.3 Consensus size: 341
4610575 CAAAATCATA
* * *
4610585 AGTGACTATGAATGGACTTTTCTTGTCAATGGATGGCTTTTGTTTCACGTTTTCCGATGCAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCCGATGCAAACA
* * * * *
4610650 TCAAATTT-TGATATGTTTT-----AATCAAAAAAATTCAATTTAAAATCATTTATAAACTTATA
66 -AAAATTTATGATCTGTTTTAAAAAAATGAAAAAAATTCAATCTAAAACCATTTATAAACTTATA
* *
4610709 AAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATAAGTTACTATAAATGGTCTTTTCTTGT
130 AAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
** *
4610774 CAATGGATGCCCTTCACTTCATGTTTCTTAACGCAAACAACAAATTATGATATGTTTTACCCAAA
195 CAATGGATGCCCTTCACTTCATGTTTCCCAACGCAAACAACAAATTATGATATGTTTTACCAAAA
* * * *
4610839 ATGAAAAAAAAAATTCAATGTAAAATCATTTATAAAGTTAAAAAAGCCACTTAAAGTGAGTACCA
260 ATGAAAAAAAAAACTCAATGTAAAATCACTTATAAAGTTAAAAAAGCCACTGAAAATGAGTACCA
4610904 AGGCTTTCAAAGTCACG
325 AGGCTTTCAAAGTCACG
* ** * * * * *
4610921 TGCAACAACAAATAGACTTTTCTTGTCAAT-GATGGCTTTTGCTTCATGTTTCCCTATGCAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCCGATGCAAACA
4610985 AAAATTTATGATCTGTTTTAAAAAAAAATGAAAAAAATTCAATCTAAAACCATTTAT-AACATTA
66 AAAATTTATGATCTGTTTT--AAAAAAATGAAAAAAATTCAATCTAAAACCATTTATAAAC-TTA
* * * ** *
4611049 TAAAATCATTTAAAGTGAGTAACAAGGTTTTTGAAGGCATTAA-TGAGTATAAATGGACTTTTCT
128 TAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCA-TAAGTGACTATAAATGGACTTTTCT
* * ** * * * *
4611113 TGTCAGTGGATAG-CTTTTGCTTCATGTTTCCCAATGCAAGCATTC-AATTATGATCTGTTTTGA
192 TGTCAATGGAT-GCCCTTCACTTCATGTTTCCCAACGCAAACA-ACAAATTATGATATGTTTT-A
** * * ** *
4611176 CCAAAAATG-AAAACTAAACTCAATTTAAAATCACTTATAAAGTTATAAAA-TTAGTGAAAATGA
254 CCAAAAATGAAAAAAAAAACTCAATGTAAAATCACTTATAAAGTTAAAAAAGCCACTGAAAATGA
** * *
4611239 GTACCAA-GCTTTTCGTAGTGATG
319 GTACCAAGGC-TTTCAAAGTCACG
* * * * ** *
4611262 AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTACATGTTTTTGGAGGCAAACA
1 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCCGATGCAAACA
*
4611327 ACAAA-TTATGATCTGTTTGAACTAAAAATGAAAAACAATTCAAT
66 A-AAATTTATGATCTGTTTTAA--AAAAATGAAAAA-AATTCAAT
4611371 TTNNNNNNNN
Statistics
Matches: 365, Mismatches: 66, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
334 6 0.02
335 40 0.11
336 23 0.06
340 4 0.01
341 50 0.14
342 217 0.59
343 25 0.07
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (341 bp):
AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCCGATGCAAACA
AAAATTTATGATCTGTTTTAAAAAAATGAAAAAAATTCAATCTAAAACCATTTATAAACTTATAA
AACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGTC
AATGGATGCCCTTCACTTCATGTTTCCCAACGCAAACAACAAATTATGATATGTTTTACCAAAAA
TGAAAAAAAAAACTCAATGTAAAATCACTTATAAAGTTAAAAAAGCCACTGAAAATGAGTACCAA
GGCTTTCAAAGTCACG
Found at i:4611356 original size:172 final size:170
Alignment explanation
Indices: 4610585--4611370 Score: 609
Period size: 172 Copynumber: 4.6 Consensus size: 170
4610575 CAAAATCATA
* * * * * * * *
4610585 AGTGACTATGAATGGACTTTTCTTGTCAATGGATGGCTTTTGTTTCACGTTTTCCGATGCAAACA
1 AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTTCATGTTTCCCAATGCAAACA
* * * * * * *
4610650 TCAAATTTTGATATGTTT-------TAATCAAAAAAATTCAATTTAAAATCATTTATAAACTTAT
66 ACAAATTATGATCTGTTTGAACCAAAAATGAAAAAAATTCAATCTAAAATCATTTATAAAGTTAT
* * * *
4610708 AAAACCACTTAAAGTGAGTAACAAGGC-TTTCAAAG-GCATA
131 AAAATCACTTAAAGTGAGTACCAA-GCTTTTCGAAGTG-ATG
** * * * ** *
4610748 AGTTACTATAAATGGTCTTTTCTTGTCAATGGATGCCCTTCACTTCATGTTTCTTAACGCAAACA
1 AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTTCATGTTTCCCAATGCAAACA
* * * *
4610813 ACAAATTATGATATGTTT-TACCCAAAATGAAAAAAAAAATTCAATGTAAAATCATTTATAAAGT
66 ACAAATTATGATCTGTTTGAACCAAAAATG---AAAAAAATTCAATCTAAAATCATTTATAAAGT
* * * * *
4610877 TAAAAAAGCCACTTAAAGTGAGTACCAAGGC-TTTCAAAGTCACG
128 TATAAAA-TCACTTAAAGTGAGTACCAA-GCTTTTCGAAGTGATG
* *** * * * * * *
4610921 TGCAACAACAAATAGACTTTTCTTGTCAAT-GATGGCTTTTGCTTCATGTTTCCCTATGCAAACA
1 AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTTCATGTTTCCCAATGCAAACA
* ** *
4610985 A-AAATTTATGATCTGTTTTAAAAAAAAATGAAAAAAATTCAATCTAAAACCATTTATAACA-TT
66 ACAAA-TTATGATCTGTTTGAACCAAAAATGAAAAAAATTCAATCTAAAATCATTTATAA-AGTT
* * * * *
4611048 ATAAAATCATTTAAAGTGAGTAACAAGGTTTTTGAAG-GCATT
129 ATAAAATCACTTAAAGTGAGTACCAAGCTTTTCGAAGTG-ATG
* * * * * *
4611090 AATGAG-TATAAATGGACTTTTCTTGTCAGTGGATAGCTTTTGCTTCATGTTTCCCAATGCAAGC
1 AGTG-GCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTTCATGTTTCCCAATGCAAAC
* * * *
4611154 ATTC-AATTATGATCTGTTTTG-ACCAAAAATGAAAACTAAACTCAATTTAAAATCACTTATAAA
65 A-ACAAATTATGATCTG-TTTGAACCAAAAATGAAAA--AAATTCAATCTAAAATCATTTATAAA
* * * * *
4611217 GTTATAAAATTAGTGAAAATGAGTACCAAGCTTTTCGTAGTGATG
126 GTTATAAAATCACTTAAAGTGAGTACCAAGCTTTTCGAAGTGATG
* **** *
4611262 AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTACATGTTTTTGGAGGCAAACA
1 AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTTCATGTTTCCCAATGCAAACA
*
4611327 ACAAATTATGATCTGTTTGAACTAAAAATGAAAAACAATTCAAT
66 ACAAATTATGATCTGTTTGAACCAAAAATGAAAAA-AATTCAAT
4611371 TTNNNNNNNN
Statistics
Matches: 493, Mismatches: 101, Indels: 50
0.77 0.16 0.08
Matches are distributed among these distances:
163 67 0.14
168 1 0.00
169 47 0.10
170 88 0.18
171 23 0.05
172 205 0.42
173 62 0.13
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (170 bp):
AGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCCTTCGCTTCATGTTTCCCAATGCAAACA
ACAAATTATGATCTGTTTGAACCAAAAATGAAAAAAATTCAATCTAAAATCATTTATAAAGTTAT
AAAATCACTTAAAGTGAGTACCAAGCTTTTCGAAGTGATG
Found at i:4614522 original size:79 final size:79
Alignment explanation
Indices: 4614429--4614588 Score: 232
Period size: 79 Copynumber: 2.0 Consensus size: 79
4614419 TTTTTAAAAC
* *
4614429 TCAAATTTTCTATTTATAACATTTTCAAAATATTATAAATTTCTCAATT-TCATTAATTGTCACT
1 TCAAATTTTATATTTATAACATTTTAAAAATATTATAAATTTCTCAATTCT-ATTAATTGTCACT
* * *
4614493 AACATTTTGATAGAA
65 AAAATTCTAATAGAA
** *
4614508 TCAAATTTTATATTTATAAGTTTTTAAAAATATTTTAAATTTCTCAATTCTATTAATTGTCACTA
1 TCAAATTTTATATTTATAACATTTTAAAAATATTATAAATTTCTCAATTCTATTAATTGTCACTA
4614573 AAATTCTAATAGAA
66 AAATTCTAATAGAA
4614587 TC
1 TC
4614589 TAATACCTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 71 0.99
80 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (79 bp):
TCAAATTTTATATTTATAACATTTTAAAAATATTATAAATTTCTCAATTCTATTAATTGTCACTA
AAATTCTAATAGAA
Found at i:4615237 original size:19 final size:19
Alignment explanation
Indices: 4615213--4615250 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4615203 CCATTTAACT
*
4615213 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
4615232 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
4615251 GGTTTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:4616627 original size:15 final size:16
Alignment explanation
Indices: 4616597--4616631 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4616587 ATAAAATATT
4616597 ATGTTTTTCAATTAAA
1 ATGTTTTTCAATTAAA
* *
4616613 ATGTTTTTTAATAAAA
1 ATGTTTTTCAATTAAA
4616629 ATG
1 ATG
4616632 AGATTTATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (16 bp):
ATGTTTTTCAATTAAA
Found at i:4624298 original size:25 final size:27
Alignment explanation
Indices: 4624251--4624304 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
4624241 AAATTATAAA
*
4624251 AAATTAATATTTTTAATTTAAAA-ATT
1 AAATTAATATTTTTAATTGAAAATATT
4624277 AAATTAA-ATTTTT-ATTAGAAAATATT
1 AAATTAATATTTTTAATT-GAAAATATT
4624303 AA
1 AA
4624305 TATTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 3 0.12
25 10 0.40
26 12 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (27 bp):
AAATTAATATTTTTAATTGAAAATATT
Found at i:4624320 original size:21 final size:21
Alignment explanation
Indices: 4624242--4624355 Score: 56
Period size: 22 Copynumber: 5.1 Consensus size: 21
4624232 TTTAATTAAA
*
4624242 AATTATAAAAAATTAATATTTTT
1 AATTAT-AAATATTAATA-TTTT
*
4624265 AATT-TAAAAATTAAATTAAATTTT
1 AATTATAAATATT-AA-T--ATTTT
* *
4624289 TATTAGAAAATATTAATATTTT
1 AATTA-TAAATATTAATATTTT
*
4624311 AATTATAAATGATGTTTAA-ATTAT
1 AATTATAAAT-A---TTAATATTTT
4624335 AA-TA-AAATATTAATATTTT
1 AATTATAAATATTAATATTTT
4624354 AA
1 AA
4624356 AAAATGTCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 26
0.69 0.07 0.25
Matches are distributed among these distances:
18 4 0.05
19 6 0.08
21 12 0.16
22 17 0.23
23 7 0.10
24 14 0.19
25 7 0.10
26 6 0.08
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (21 bp):
AATTATAAATATTAATATTTT
Found at i:4627512 original size:26 final size:26
Alignment explanation
Indices: 4627451--4627514 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
4627441 CTTCTTTCTT
4627451 TTTTATTTTATTTATTTTTTATTTTTA
1 TTTT-TTTTATTTATTTTTTATTTTTA
***
4627478 TTGGATTTATTTA-TTTTTATTTTTTA
1 TTTTTTTTATTTATTTTTTA-TTTTTA
4627504 TTTTTTTTATT
1 TTTTTTTTATT
4627515 GAATGGGTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 6 0.20
26 22 0.73
27 2 0.07
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (26 bp):
TTTTTTTTATTTATTTTTTATTTTTA
Found at i:4627730 original size:51 final size:52
Alignment explanation
Indices: 4627657--4627880 Score: 144
Period size: 59 Copynumber: 4.1 Consensus size: 52
4627647 AACAAAATTG
* * * * *
4627657 AAATTCCTAGACTTGATCTAGGCTTGACCCATATTAGAACAAGTTCGA-TTA
1 AAATTCCTAAACTTAATATAGGCTCGACCCATATTACAACAAGTTCGATTTA
* * *
4627708 AAATTCCTAAACTTAATATAGGCTCGACCTATCTTACAACAGGTTCGATTTAAAAA
1 AAATTCCTAAACTTAATATAGGCTCGACCCATATTACAACAAGTTCGATTT----A
* * * * * *
4627764 TTCAAATTCCTAAACTTAATTTAGGCTCGACCTATCTCACAATAGGTTCGATTTAAAAA
1 ---AAATTCCTAAACTTAATATAGGCTCGACCCATATTACAACAAGTTCGATTT----A
* * * * *
4627823 TTCAAATTCCTAAACTTAATTTAGGCTCGACCTATCTCACAACAGGTTCGATTTA
1 ---AAATTCCTAAACTTAATATAGGCTCGACCCATATTACAACAAGTTCGATTTA
4627878 AAA
1 AAA
4627881 ATTCAAATTC
Statistics
Matches: 153, Mismatches: 12, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
51 40 0.26
52 5 0.03
55 1 0.01
56 1 0.01
59 106 0.69
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (52 bp):
AAATTCCTAAACTTAATATAGGCTCGACCCATATTACAACAAGTTCGATTTA
Found at i:4628205 original size:60 final size:59
Alignment explanation
Indices: 4627708--4628243 Score: 630
Period size: 59 Copynumber: 9.1 Consensus size: 59
4627698 AGTTCGATTA
* * * *
4627708 AAATTCCTAAACTTAATATAGGCTCGACCTATCTTACAACAGGTTCGATTTAAAAATTC
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
* * * *
4627767 AAATTCCTAAACTTAATTTAGGCTCGACCTATCTCACAATAGGTTCGATTTAAAAATTC
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
* * *
4627826 AAATTCCTAAACTTAATTTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTC
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
* * * * *
4627885 AAATTCTTAGACTTAATCTAAGCTCAACCTATCTCAAAACAGGTTCGATTTAAAAGTTG
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
* * * * * *
4627944 AAATTCCTAGACTTAATCTAAGCTTGACTTATCTTAAAATAGGTTC-A---AAAAATTG
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
* * * * *
4627999 AAATTCTTAGACTTAATCTAAGCTTGACCTATCTCACAACAAGTTCGATTTAAAAAATTA
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT-AAAAATTG
** * * * * * *
4628059 AAATTCCTAGGTTTGACCTGGGCTCGACTTATCTCACAACAGGTACGATTTAGAAATTG
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
* * *
4628118 AAATTCCTAGACTTGATCTAGGTTCGACCTATCTCACAATAGGTTCGATTTAAAAAATTG
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT-AAAAATTG
* * * * *
4628178 AAATTCCTAAACTTAATTTAGACTCGACCTATCTCACAATAGGTTTGATTTAAAAATTTG
1 AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAA-TTG
4628238 AAATTC
1 AAATTC
4628244 TTGCTTTCGA
Statistics
Matches: 416, Mismatches: 54, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
55 47 0.11
56 1 0.00
58 1 0.00
59 259 0.62
60 108 0.26
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (59 bp):
AAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTG
Found at i:4634262 original size:129 final size:128
Alignment explanation
Indices: 4634084--4634346 Score: 481
Period size: 129 Copynumber: 2.0 Consensus size: 128
4634074 GAAAATTCCA
* * *
4634084 ATTTGACTCCAAATCGGTCTTCGAACTCCGAATCACCATTTTAAGTCATTTTGGAGTTTTAAAAT
1 ATTTGGCTCCAAATCGGTCCTCGAACTCCGAATCACCATTTTAAGTCATTCTGGAGTTTTAAAAT
4634149 TCTCAATTTTAGCTTAAAATCTCTATTTGGACTAGTTCAAGGCTTAATTCAACTTAATTGTACC
66 TCTCAATTTTAGCTT-AAATCTCTATTTGGACTAGTTCAAGGCTTAATTCAACTTAATTGTACC
4634213 ATTTGGCTCCAAATCGGTCCTCGAACTCCGAATCACCATTTTAAGTCATTCTGGAGTTTTAAAAT
1 ATTTGGCTCCAAATCGGTCCTCGAACTCCGAATCACCATTTTAAGTCATTCTGGAGTTTTAAAAT
*
4634278 TCTCAATTTTAGCTTAAATCTCTATTTGGACTAGTTCGAGGCTTAATTCAACTTAATTGTACC
66 TCTCAATTTTAGCTTAAATCTCTATTTGGACTAGTTCAAGGCTTAATTCAACTTAATTGTACC
4634341 ATTTGG
1 ATTTGG
4634347 TACATTGCCA
Statistics
Matches: 130, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
128 53 0.41
129 77 0.59
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (128 bp):
ATTTGGCTCCAAATCGGTCCTCGAACTCCGAATCACCATTTTAAGTCATTCTGGAGTTTTAAAAT
TCTCAATTTTAGCTTAAATCTCTATTTGGACTAGTTCAAGGCTTAATTCAACTTAATTGTACC
Found at i:4637126 original size:26 final size:26
Alignment explanation
Indices: 4637097--4637158 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
4637087 ACCATATATC
4637097 CATCATCATCATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
4637123 CATCATCATCATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
4637149 CATCATCATC
1 CATCATCATC
4637159 TCATATGCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.31, C:0.42, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:4637246 original size:42 final size:42
Alignment explanation
Indices: 4637178--4637315 Score: 204
Period size: 42 Copynumber: 3.3 Consensus size: 42
4637168 ACGGCTTATG
* * *
4637178 CGCATATAACCGGGTCAGCAACGGCTTATGTGCACTCCCACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
* * *
4637220 CACACATAGCCGGGTTAGCAACGGCTTATGTGCAATCCTACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
* *
4637262 CGCACATAGCCGGGTCAGCAACGGCTTCTGTGCACTCTTACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
4637304 CGCACATAGCCG
1 CGCACATAGCCG
4637316 AGTCCAAATC
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.23, C:0.33, G:0.22, T:0.22
Consensus pattern (42 bp):
CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
Found at i:4640744 original size:300 final size:303
Alignment explanation
Indices: 4640158--4640761 Score: 1090
Period size: 300 Copynumber: 2.0 Consensus size: 303
4640148 TGCCAATTCC
* **
4640158 ACATCTAGTCCTTTAAATCCTTTGGCTCCTCTTTACTATGCATAGCAAAGTTCAAGCTCAACCTT
1 ACATCTAGTCCTTTAAATCCCTTGGCTCCTCCCTACTATGCATAGCAAAGTTCAAGCTCAACCTT
*
4640223 AGAGCAGATTTGTTTACTAACCTTCTTACTTCATGACCACACATCAGTTATAGTAATCATTGATA
66 AGAGCAGATTTGTTTACTAACCTTCTTACTTCATGACCACACATCAATTATAGTAATCATTGATA
4640288 CTCACTCTCAAGTTAATTCACATGCTTATATCCATGAACGATAATAGGTCTAAAATCAATTCTTG
131 CTCACTCTCAAGTTAATTCACATGCTTATATCCATGAACGATAATAGGTCT-AAATCAATTCTTG
*
4640353 AGATCTCAAAATCACTTAATTGAAATCAACACCAGTTCCCTCTAAGTTGCTATACCTATTCAACA
195 AAATCTCAAAATCACTTAATTGAAATCAACACCAGTTCCCTCTAAGTTGCTATACCTATTCAACA
4640418 CATTTTCACATATAAAATATTTCAAAATCCCAACACCAATTTTA
260 CATTTTCACATATAAAATATTTCAAAATCCCAACACCAATTTTA
*
4640462 NACATCTAGTCCTTT-AATCCCTTGGCTCC-CCCTACTATGCATAGCAAAGTTCAAGCTCATCCT
1 -ACATCTAGTCCTTTAAATCCCTTGGCTCCTCCCTACTATGCATAGCAAAGTTCAAGCTCAACCT
4640525 TAGAGCAGATTTGTTTACTAA-CTTCTTACTTCATGACCACACATCAATTATAGTAATCATTGAT
65 TAGAGCAGATTTGTTTACTAACCTTCTTACTTCATGACCACACATCAATTATAGTAATCATTGAT
4640589 ACTCACTCTCAAGTTAATTCACATGCTTATATCCATGAACGATAATAGGTCT-AATCAATTCTTG
130 ACTCACTCTCAAGTTAATTCACATGCTTATATCCATGAACGATAATAGGTCTAAATCAATTCTTG
*
4640653 AAATCTCACAATCACTTAATTGAAATCAACACCAGTTCCCTCTAAGTTGCTATACCTATTCAACA
195 AAATCTCAAAATCACTTAATTGAAATCAACACCAGTTCCCTCTAAGTTGCTATACCTATTCAACA
*
4640718 CATTTTCACATATAAAATATTTCAAAATCCCAACACCACTTTTA
260 CATTTTCACATATAAAATATTTCAAAATCCCAACACCAATTTTA
4640762 TATGGGCATA
Statistics
Matches: 291, Mismatches: 8, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
300 118 0.41
302 94 0.32
303 52 0.18
304 13 0.04
305 14 0.05
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.33
Consensus pattern (303 bp):
ACATCTAGTCCTTTAAATCCCTTGGCTCCTCCCTACTATGCATAGCAAAGTTCAAGCTCAACCTT
AGAGCAGATTTGTTTACTAACCTTCTTACTTCATGACCACACATCAATTATAGTAATCATTGATA
CTCACTCTCAAGTTAATTCACATGCTTATATCCATGAACGATAATAGGTCTAAATCAATTCTTGA
AATCTCAAAATCACTTAATTGAAATCAACACCAGTTCCCTCTAAGTTGCTATACCTATTCAACAC
ATTTTCACATATAAAATATTTCAAAATCCCAACACCAATTTTA
Found at i:4641399 original size:11 final size:11
Alignment explanation
Indices: 4641383--4641410 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
4641373 CACTATAGTT
4641383 TTTAAAACAAC
1 TTTAAAACAAC
4641394 TTTAAAACAAC
1 TTTAAAACAAC
4641405 TTTAAA
1 TTTAAA
4641411 CCCAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (11 bp):
TTTAAAACAAC
Found at i:4648512 original size:58 final size:58
Alignment explanation
Indices: 4648422--4648533 Score: 197
Period size: 58 Copynumber: 1.9 Consensus size: 58
4648412 ATAATCATCT
* *
4648422 AAAGTAGTTTGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCTATGCAATGC
1 AAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCCATGCAATGC
*
4648480 AAAGTAGTATGCATGTGATAGATTTATTTTATGCGATTTAATAAATGCCATGCA
1 AAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCCATGCA
4648534 TACAAAGATG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (58 bp):
AAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCCATGCAATGC
Found at i:4652913 original size:28 final size:29
Alignment explanation
Indices: 4652872--4652927 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
4652862 CAAGTGTCCT
** *
4652872 GGTGGTGAAAATTATGATTTTGCCCCTAG
1 GGTGGTGAAAATTACCATTTTACCCCTAG
4652901 GGTGGT-AAAATTACCATTTTACCCCTA
1 GGTGGTGAAAATTACCATTTTACCCCTA
4652928 TGCTCCGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (29 bp):
GGTGGTGAAAATTACCATTTTACCCCTAG
Found at i:4653166 original size:19 final size:20
Alignment explanation
Indices: 4653136--4653173 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
4653126 TCATTCTAGG
4653136 ACCTTAAAATTCTCAATTTC
1 ACCTTAAAATTCTCAATTTC
*
4653156 ACCTT-AAATTCTCTATTT
1 ACCTTAAAATTCTCAATTT
4653174 GATCTAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.45
Consensus pattern (20 bp):
ACCTTAAAATTCTCAATTTC
Found at i:4655912 original size:20 final size:20
Alignment explanation
Indices: 4655887--4655932 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
4655877 TTTTGACCCC
4655887 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
4655907 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
4655927 ATTTGA
1 ATTTGA
4655933 GGTTTAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:4664532 original size:10 final size:10
Alignment explanation
Indices: 4664504--4664542 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
4664494 CCTCACCAAA
4664504 CATCAAATAT
1 CATCAAATAT
*
4664514 CACCAAAATAT
1 CATC-AAATAT
*
4664525 CATGAAATAT
1 CATCAAATAT
4664535 CATCAAAT
1 CATCAAAT
4664543 TCAGCCACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.51, C:0.21, G:0.03, T:0.26
Consensus pattern (10 bp):
CATCAAATAT
Found at i:4668166 original size:28 final size:29
Alignment explanation
Indices: 4668108--4668167 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
4668098 TTTTTGAAAT
*
4668108 TTACACTTTTACCCCCGTAAAAGTCAAAAA
1 TTACACTTTTACCCCCG-AAAACTCAAAAA
* *
4668138 TTACATTTTTACCCCC-AAAACTGAAAAA
1 TTACACTTTTACCCCCGAAAACTCAAAAA
4668166 TT
1 TT
4668168 GCCCATAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
30 15 0.56
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (29 bp):
TTACACTTTTACCCCCGAAAACTCAAAAA
Found at i:4670501 original size:12 final size:11
Alignment explanation
Indices: 4670484--4670573 Score: 59
Period size: 9 Copynumber: 8.4 Consensus size: 11
4670474 ATTTAAGGTG
4670484 ATTTATTATCTT
1 ATTTATTAT-TT
4670496 ATTTATATATTT
1 ATTTAT-TATTT
4670508 A-TTATTA-TT
1 ATTTATTATTT
4670517 A-TTATTATTT
1 ATTTATTATTT
*
4670527 -GTTATTA-TT
1 ATTTATTATTT
4670536 A-TTATTA-TT
1 ATTTATTATTT
*
4670545 ATTATTTTATTT
1 ATT-TATTATTT
*
4670557 TTTTATGTATATT
1 ATTTAT-TAT-TT
4670570 ATTT
1 ATTT
4670574 TAAACAACAA
Statistics
Matches: 65, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
9 20 0.31
10 11 0.17
11 10 0.15
12 16 0.25
13 8 0.12
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.69
Consensus pattern (11 bp):
ATTTATTATTT
Found at i:4670506 original size:8 final size:7
Alignment explanation
Indices: 4670494--4670573 Score: 66
Period size: 6 Copynumber: 11.9 Consensus size: 7
4670484 ATTTATTATC
4670494 TTATTTA
1 TTATTTA
4670501 TATATTTA
1 T-TATTTA
4670509 TTA-TTA
1 TTATTTA
4670515 TTA-TTA
1 TTATTTA
*
4670521 TTATTTG
1 TTATTTA
4670528 TTA-TTA
1 TTATTTA
4670534 TTA-TTA
1 TTATTTA
4670540 TTA-TTA
1 TTATTTA
4670546 TTATTTTA
1 TTA-TTTA
4670554 TT-TTT-
1 TTATTTA
4670559 TTATGTATA
1 TTAT-T-TA
4670568 TTATTT
1 TTATTT
4670574 TAAACAACAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
5 2 0.03
6 33 0.52
7 10 0.16
8 14 0.22
9 4 0.06
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (7 bp):
TTATTTA
Found at i:4670514 original size:3 final size:3
Alignment explanation
Indices: 4670506--4670572 Score: 77
Period size: 3 Copynumber: 22.7 Consensus size: 3
4670496 ATTTATATAT
*
4670506 TTA TTA TTA TTA TTA TTA TTTG TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
4670551 TTA TT- TTT TTA TGTA -TA TTA TT
1 TTA TTA TTA TTA T-TA TTA TTA TT
4670573 TTAAACAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
2 6 0.11
3 46 0.82
4 4 0.07
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:4670531 original size:19 final size:19
Alignment explanation
Indices: 4670484--4670572 Score: 91
Period size: 19 Copynumber: 4.8 Consensus size: 19
4670474 ATTTAAGGTG
*
4670484 ATTTATTA-TCTTATTTATAT
1 ATTTATTATTATTA-TTAT-T
4670504 ATTTATTATTATTATTATT
1 ATTTATTATTATTATTATT
*
4670523 ATTTGTTATTATTATTATT
1 ATTTATTATTATTATTATT
4670542 A-TTATTATT-TTATT-TT
1 ATTTATTATTATTATTATT
4670558 -TTTATGTA-TATTATT
1 ATTTAT-TATTATTATT
4670573 TTAAACAACA
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.11
17 12 0.19
18 7 0.11
19 20 0.32
20 12 0.19
21 4 0.06
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.69
Consensus pattern (19 bp):
ATTTATTATTATTATTATT
Found at i:4670534 original size:22 final size:22
Alignment explanation
Indices: 4670506--4670547 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
4670496 ATTTATATAT
4670506 TTATTATTATTATTATTATTTG
1 TTATTATTATTATTATTATTTG
4670528 TTATTATTATTATTATTATT
1 TTATTATTATTATTATTATT
4670548 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
TTATTATTATTATTATTATTTG
Found at i:4670562 original size:22 final size:25
Alignment explanation
Indices: 4670486--4670575 Score: 93
Period size: 25 Copynumber: 3.7 Consensus size: 25
4670476 TTAAGGTGAT
*
4670486 TTATTA-TCTTATTTATATATTTATTA
1 TTATTATTATTATTT-TATA-TTATTA
4670512 TTATTATTATTATTTGT-TATTATTA
1 TTATTATTATTATTT-TATATTATTA
4670537 TTATTATTATTATTTTAT-TT-TT-
1 TTATTATTATTATTTTATATTATTA
4670559 TTATGTA-TATTATTTTA
1 TTAT-TATTATTATTTTA
4670576 AACAACAATT
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
22 14 0.24
23 4 0.07
24 3 0.05
25 22 0.37
26 8 0.14
27 8 0.14
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.69
Consensus pattern (25 bp):
TTATTATTATTATTTTATATTATTA
Found at i:4672095 original size:9 final size:9
Alignment explanation
Indices: 4672084--4672137 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
4672074 ACTCTTCTTT
*
4672084 TTTTTATTT
1 TTTTTATTA
4672093 TTTTGTATTA
1 TTTT-TATTA
**
4672103 GATTTATTA
1 TTTTTATTA
**
4672112 GATTTATTA
1 TTTTTATTA
4672121 TTTTTATTA
1 TTTTTATTA
4672130 TTTTTATT
1 TTTTTATT
4672138 TTTATTGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
9 33 0.85
10 6 0.15
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (9 bp):
TTTTTATTA
Found at i:4672138 original size:15 final size:16
Alignment explanation
Indices: 4672113--4672143 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
4672103 GATTTATTAG
4672113 ATTTATTATTTTTATT
1 ATTTATTATTTTTATT
4672129 ATTT-TTATTTTTATT
1 ATTTATTATTTTTATT
4672144 GAATGGGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTATTATTTTTATT
Found at i:4672695 original size:26 final size:27
Alignment explanation
Indices: 4672666--4672747 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 27
4672656 TTAATCATAA
4672666 TAATGTTTAAATTATAAATAA-AAAAT
1 TAATGTTTAAATTATAAATAATAAAAT
* *
4672692 TAATGTTTCAAATTAAATGAAATAATCATAT
1 TAATGTTT-AAATT--AT-AAATAATAAAAT
*
4672723 TAATGTTTAAATTATAAATCATAAA
1 TAATGTTTAAATTATAAATAATAAA
4672748 TATTTTAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
26 8 0.17
27 12 0.26
28 2 0.04
29 2 0.04
30 11 0.24
31 11 0.24
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (27 bp):
TAATGTTTAAATTATAAATAATAAAAT
Found at i:4672760 original size:27 final size:26
Alignment explanation
Indices: 4672730--4672786 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
4672720 TATTAATGTT
4672730 TAAATTATAAATCATAAATATTTTAAA
1 TAAATTATAAATCATAAATA-TTTAAA
* *
4672757 TAAATTATAAATTATTAATATTTAAA
1 TAAATTATAAATCATAAATATTTAAA
4672783 -AAAT
1 TAAAT
4672787 AAAATAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 4 0.14
26 6 0.21
27 18 0.64
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
TAAATTATAAATCATAAATATTTAAA
Found at i:4679334 original size:22 final size:22
Alignment explanation
Indices: 4679309--4679350 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4679299 ATTAGAATGG
*
4679309 TTTTTAAGTATTACGAGACTGA
1 TTTTTAAGCATTACGAGACTGA
* *
4679331 TTTTTAGGCATTACGTGACT
1 TTTTTAAGCATTACGAGACT
4679351 TAATCACTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (22 bp):
TTTTTAAGCATTACGAGACTGA
Found at i:4679394 original size:22 final size:22
Alignment explanation
Indices: 4679369--4679441 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 22
4679359 GCATGACTGA
*
4679369 TTTTTAAGCATTACGTGATTGG
1 TTTTTAAGCATTGCGTGATTGG
* *
4679391 -TTTTAGGCATTGCGTGACTGG
1 TTTTTAAGCATTGCGTGATTGG
* * **
4679412 TTTTTAGGCATTGTGTGATTAA
1 TTTTTAAGCATTGCGTGATTGG
4679434 TTTTTAAG
1 TTTTTAAG
4679442 TAATGCCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 18 0.43
22 24 0.57
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.47
Consensus pattern (22 bp):
TTTTTAAGCATTGCGTGATTGG
Found at i:4679400 original size:21 final size:22
Alignment explanation
Indices: 4679362--4679423 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 22
4679352 AATCACTGCA
* *
4679362 TGACTGATTTTTAAGCATTACG
1 TGACTGGTTTTTAGGCATTACG
* *
4679384 TGATTGG-TTTTAGGCATTGCG
1 TGACTGGTTTTTAGGCATTACG
4679405 TGACTGGTTTTTAGGCATT
1 TGACTGGTTTTTAGGCATT
4679424 GTGTGATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 18 0.53
22 16 0.47
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.44
Consensus pattern (22 bp):
TGACTGGTTTTTAGGCATTACG
Found at i:4679476 original size:23 final size:22
Alignment explanation
Indices: 4679450--4679534 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 22
4679440 AGTAATGCCT
*
4679450 AAGTCACACAATGTCTTACTAAC
1 AAGTCA-ACAATGCCTTACTAAC
4679473 AAGTCAAGCAATGCCTTACTAAC
1 AAGTCAA-CAATGCCTTACTAAC
* * * *
4679496 TAGTTATGCAATGCCTTACTAAT
1 AAGTCA-ACAATGCCTTACTAAC
*
4679519 AAGTCATGCAATGCCT
1 AAGTCA-ACAATGCCT
4679535 ATCAATTAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
22 1 0.02
23 52 0.98
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (22 bp):
AAGTCAACAATGCCTTACTAAC
Found at i:4679600 original size:21 final size:21
Alignment explanation
Indices: 4679576--4679689 Score: 84
Period size: 21 Copynumber: 5.2 Consensus size: 21
4679566 CTAGTCAAGT
*
4679576 AATGCCCAAAGTCAGTTACGC
1 AATGCCCAAAGTCAGTCACGC
* *
4679597 AATGTCCAAAGTCAGTCACGT
1 AATGCCCAAAGTCAGTCACGC
* **
4679618 AATACCTTATCAAAAACTAGTCACGC
1 AATGCC----CAAAGTC-AGTCACGC
* * *
4679644 AATGCCTAAAGTCAGTTATGC
1 AATGCCCAAAGTCAGTCACGC
* *
4679665 AATGTCCAAAGTCAGTCATGC
1 AATGCCCAAAGTCAGTCACGC
4679686 AATG
1 AATG
4679690 TCTAAAAACT
Statistics
Matches: 71, Mismatches: 17, Indels: 10
0.72 0.17 0.10
Matches are distributed among these distances:
21 50 0.70
22 4 0.06
25 5 0.07
26 12 0.17
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (21 bp):
AATGCCCAAAGTCAGTCACGC
Found at i:4679614 original size:68 final size:68
Alignment explanation
Indices: 4679542--4679682 Score: 237
Period size: 68 Copynumber: 2.1 Consensus size: 68
4679532 CCTATCAATT
* *
4679542 AGTCACGTAATGCCTTATCAAAAACTAGTCAAGTAATGCCCAAAGTCAGTTACGCAATGTCCAAA
1 AGTCACGTAATACCTTATCAAAAACTAGTCAAGCAATGCCCAAAGTCAGTTACGCAATGTCCAAA
4679607 GTC
66 GTC
* * *
4679610 AGTCACGTAATACCTTATCAAAAACTAGTCACGCAATGCCTAAAGTCAGTTATGCAATGTCCAAA
1 AGTCACGTAATACCTTATCAAAAACTAGTCAAGCAATGCCCAAAGTCAGTTACGCAATGTCCAAA
4679675 GTC
66 GTC
4679678 AGTCA
1 AGTCA
4679683 TGCAATGTCT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (68 bp):
AGTCACGTAATACCTTATCAAAAACTAGTCAAGCAATGCCCAAAGTCAGTTACGCAATGTCCAAA
GTC
Found at i:4679882 original size:61 final size:60
Alignment explanation
Indices: 4679810--4679926 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 60
4679800 CTACTTGACA
* * *
4679810 AAAAATGCTCAAAATGTTCAAAAGTTTTTCTTCATATATCAAAAA-TCACTCCAAAATGCTT
1 AAAAATACTCAAAATATT-AAAAGGTTTTCTTCATATATCAAAAACT-ACTCCAAAATGCTT
* * * *
4679871 AAAAATACTCAAAATATTTACAGGTTTTCTTCGTGTATCAAAAACTACTCCAAAAT
1 AAAAATACTCAAAATATTAAAAGGTTTTCTTCATATATCAAAAACTACTCCAAAAT
4679927 ACTCAAAATG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
60 31 0.65
61 17 0.35
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (60 bp):
AAAAATACTCAAAATATTAAAAGGTTTTCTTCATATATCAAAAACTACTCCAAAATGCTT
Found at i:4685010 original size:24 final size:26
Alignment explanation
Indices: 4684968--4685029 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
4684958 TAAAATTATG
4684968 TTTTTTTAATATTCAATA-TTTTTAC
1 TTTTTTTAATATTCAATATTTTTTAC
* * *
4684993 TTTTTTTATTTTTC-ATATTTTTTAT
1 TTTTTTTAATATTCAATATTTTTTAC
*
4685018 TTTTTTTTATAT
1 TTTTTTTAATAT
4685030 AAAGTAAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 3 0.10
25 27 0.90
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (26 bp):
TTTTTTTAATATTCAATATTTTTTAC
Found at i:4686102 original size:2 final size:2
Alignment explanation
Indices: 4686095--4686192 Score: 74
Period size: 2 Copynumber: 49.5 Consensus size: 2
4686085 AATTATTTTA
* * *
4686095 AT AT AT AT AC AC AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* ** * * * * *
4686137 ANN NN NT -T TT AT -T AT AT AT AC AC AC AT AT AT AT AT AT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4686178 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
4686193 CACACAAAAG
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
1 2 0.02
2 83 0.98
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:4686170 original size:53 final size:48
Alignment explanation
Indices: 4686088--4686191 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 48
4686078 TGGATCAAAT
4686088 TATTTTAATATATATACACACATATATATATATATATATATATATATA
1 TATTTTAATATATATACACACATATATATATATATATATATATATATA
*
4686136 TANNNNNTTTTATTATATATACACACATATATATATATATATATATATATATA
1 TA-----TTTTAATATATATACACACATATATATATATATATATATATATATA
4686189 TAT
1 TAT
4686192 ACACACAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
48 3 0.06
53 47 0.94
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.45
Consensus pattern (48 bp):
TATTTTAATATATATACACACATATATATATATATATATATATATATA
Found at i:4687057 original size:63 final size:63
Alignment explanation
Indices: 4686985--4687108 Score: 185
Period size: 63 Copynumber: 2.0 Consensus size: 63
4686975 GCTCATCTTT
* * *
4686985 CTCTCTCAGCTCTCTGAACTGTCTCAACTCTGTCAACTCTTTGTTAAGTACCAGCGTCATCAG
1 CTCTCTCAGCTCTCTAAACTGTATCAACTCTGTCAACTCTTTGTTAAGCACCAGCGTCATCAG
* * * *
4687048 CTCTCTCAGCTCTCTAAACTGTATGAGCTCTGTCAACTCTTTGTTGAGCACCATCGTCATC
1 CTCTCTCAGCTCTCTAAACTGTATCAACTCTGTCAACTCTTTGTTAAGCACCAGCGTCATC
4687109 GGCCTGTGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.34
Consensus pattern (63 bp):
CTCTCTCAGCTCTCTAAACTGTATCAACTCTGTCAACTCTTTGTTAAGCACCAGCGTCATCAG
Found at i:4687496 original size:31 final size:31
Alignment explanation
Indices: 4687458--4687689 Score: 324
Period size: 31 Copynumber: 7.5 Consensus size: 31
4687448 GTGTCAACGT
* *
4687458 TGGCGTGTTACCACAATTTACATTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
* *
4687489 TGGCGTGTTAGCACAGTTTACGTTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
4687520 T-GCTGTGTTACCACATTTTACGTTATATGCA
1 TGGC-GTGTTACCACATTTTACGTTATATGCA
* *
4687551 TGACGTGTTACCACA-TTTATGTTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
* *
4687581 TGGCGTGTTACCACATTTTACATTACATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
* * *
4687612 TGGCATGTTACCACATTTTATGTTACATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
*
4687643 TGGTGTGTTACCACATTTTACGTTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
*
4687674 TGGCGTGTTACAACAT
1 TGGCGTGTTACCACAT
4687690 GACTGACAAA
Statistics
Matches: 178, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
30 30 0.17
31 147 0.83
32 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (31 bp):
TGGCGTGTTACCACATTTTACGTTATATGCA
Found at i:4687681 original size:123 final size:123
Alignment explanation
Indices: 4687458--4687689 Score: 374
Period size: 123 Copynumber: 1.9 Consensus size: 123
4687448 GTGTCAACGT
* * * *
4687458 TGGCGTGTTACCACAATTTACATTATATGCATGGCGTGTTAGCACAGTTTACGTTATATGCATGC
1 TGGCGTGTTACCACAATTTACATTACATGCATGGCATGTTACCACAGTTTACGTTACATGCATGC
*
4687523 TGTGTTACCACATTTTACGTTATATGCATGACGTGTTACCACATTTATGTTATATGCA
66 TGTGTTACCACATTTTACGTTATATGCATGACGTGTTACAACATTTATGTTATATGCA
* * * *
4687581 TGGCGTGTTACCACATTTTACATTACATGCATGGCATGTTACCACATTTTATGTTACATGCATGG
1 TGGCGTGTTACCACAATTTACATTACATGCATGGCATGTTACCACAGTTTACGTTACATGCATGC
*
4687646 TGTGTTACCACATTTTACGTTATATGCATGGCGTGTTACAACAT
66 TGTGTTACCACATTTTACGTTATATGCATGACGTGTTACAACAT
4687690 GACTGACAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 99 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (123 bp):
TGGCGTGTTACCACAATTTACATTACATGCATGGCATGTTACCACAGTTTACGTTACATGCATGC
TGTGTTACCACATTTTACGTTATATGCATGACGTGTTACAACATTTATGTTATATGCA
Found at i:4691599 original size:118 final size:118
Alignment explanation
Indices: 4691390--4691786 Score: 551
Period size: 118 Copynumber: 3.4 Consensus size: 118
4691380 TCATATTGCA
* * * *
4691390 GTGACACGCTGAGTAGAAGTAGATAGTTGGCGTGACACGTTGAGTGCATGTAGATTTTGGTGATG
1 GTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGTAGATTTTGGTGGTG
* * * *
4691455 ACATGCTGACTTCTTACAATATTGTGGGGTGATACGGCACGCCCCATCTTGTG
66 ACATGCTGACTTCTTGCAGTATTGTGGGGTGACACGACACGCCCCATCTTGTG
* * * * *
4691508 CTGACACGCTGAGTGGAAGCAGATAGTTGGCATGACACGCTGAATGCATATAGATTTTGGTGGTA
1 GTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGTAGATTTTGGTGGTG
* * * *
4691573 ACACGCTGACTTCGTGCAGTATTGTGGGATGACACGACACGCCCCATTTTGTG
66 ACATGCTGACTTCTTGCAGTATTGTGGGGTGACACGACACGCCCCATCTTGTG
* * * * * * *
4691626 GTGACACACTGAGTGGAAGTAGATAGTTGGCTTGACACACTGAGTGCATGCAAATTTCGGTGGTG
1 GTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGTAGATTTTGGTGGTG
*
4691691 ACATGCTGACTTCTTGCAGTATTGTGGGGTGACACGACACTCCCCATCTTGTG
66 ACATGCTGACTTCTTGCAGTATTGTGGGGTGACACGACACGCCCCATCTTGTG
* *
4691744 GTGACACGCTGAGTGGAACCAGATACTTGGCGTGACACGCTGA
1 GTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGA
4691787 CTTGTTTTAG
Statistics
Matches: 240, Mismatches: 39, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
118 240 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (118 bp):
GTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGTAGATTTTGGTGGTG
ACATGCTGACTTCTTGCAGTATTGTGGGGTGACACGACACGCCCCATCTTGTG
Found at i:4693446 original size:9 final size:9
Alignment explanation
Indices: 4693398--4693456 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
4693388 CAAAAAATAA
4693398 AAAATAAAT
1 AAAATAAAT
4693407 --AAT-AAT
1 AAAATAAAT
*
4693413 GAAATATAATT
1 -AAA-ATAAAT
*
4693424 AAAA-AAAC
1 AAAATAAAT
4693432 AAAATAAAT
1 AAAATAAAT
4693441 AAAATAAAT
1 AAAATAAAT
4693450 AAAATAA
1 AAAATAA
4693457 GAAATAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
6 3 0.08
7 3 0.08
8 6 0.15
9 21 0.52
10 5 0.12
11 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAATAAAT
Found at i:4693449 original size:43 final size:40
Alignment explanation
Indices: 4693391--4693472 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 40
4693381 CCTATTTCAA
4693391 AAAATAAAAAATAAATAATAAT-GAAATATAATTAAAAAAAC
1 AAAATAAAAAATAAATAA-AATAGAAATA-AATTAAAAAAAC
4693432 AAAATAAATAAAATAAATAAAATAAGAAATAAATTAAAAAA
1 AAAAT-AA-AAAATAAATAAAAT-AGAAATAAATTAAAAAA
4693473 TGAAAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
41 5 0.14
42 5 0.14
43 21 0.57
44 6 0.16
ACGTcount: A:0.76, C:0.01, G:0.02, T:0.21
Consensus pattern (40 bp):
AAAATAAAAAATAAATAAAATAGAAATAAATTAAAAAAAC
Found at i:4693463 original size:12 final size:12
Alignment explanation
Indices: 4693391--4693482 Score: 50
Period size: 12 Copynumber: 7.8 Consensus size: 12
4693381 CCTATTTCAA
4693391 AAAATAAAAAAT
1 AAAATAAAAAAT
*
4693403 -AAAT-AATAAT
1 AAAATAAAAAAT
* * *
4693413 GAAAT-ATAATT
1 AAAATAAAAAAT
*
4693424 AAAAAAACAAAAT
1 AAAATAA-AAAAT
4693437 -AAATAAAATAAAT
1 AAAAT-AAA-AAAT
*
4693450 AAAATAAGAAAT
1 AAAATAAAAAAT
*
4693462 AAATTAAAAAAT
1 AAAATAAAAAAT
4693474 GAAAA-AAAA
1 -AAAATAAAA
4693483 GGAATGAACA
Statistics
Matches: 60, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
10 5 0.08
11 14 0.23
12 23 0.38
13 14 0.23
14 4 0.07
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.20
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:4698623 original size:31 final size:31
Alignment explanation
Indices: 4698581--4698878 Score: 452
Period size: 31 Copynumber: 9.5 Consensus size: 31
4698571 GTTAACCCAT
*
4698581 AATGTGGTAACACGACATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
4698612 AATGTGATAACACGCCATGCATATAACATAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
*
4698643 AATGTGGTAACATGCCATGCATATAACGTAAA
1 AATGTGGTAACACGCCATGCATATAACGT-AA
* * *
4698675 AATGTGGTAACAGGCTATGCATATAACGAAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
*
4698706 AATGTGGTAACACGCCATGTATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
*
4698737 AATGTGGTAACACGCCATACATATAACGTAAA
1 AATGTGGTAACACGCCATGCATATAACGT-AA
* *
4698769 AATGTAGTAACACGCCATGCATATAACGAAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
4698800 AATGTGGTAACACGCCATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
4698831 AATGTGATAACACGTCATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
*
4698862 AATGTGATAACACGCCA
1 AATGTGGTAACACGCCA
4698879 ATGCTGACAC
Statistics
Matches: 242, Mismatches: 23, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
31 186 0.77
32 56 0.23
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (31 bp):
AATGTGGTAACACGCCATGCATATAACGTAA
Found at i:4698695 original size:94 final size:93
Alignment explanation
Indices: 4698581--4698873 Score: 444
Period size: 94 Copynumber: 3.1 Consensus size: 93
4698571 GTTAACCCAT
* * * *
4698581 AATGTGGTAACACGACATGCATATAACGTAAAATGTGATAACACGCCATGCATATAACATAAAAT
1 AATGTGGTAACA-GGCATGCATATAACGAAAAATGTGGTAACACGCCATGCATATAACGTAAAAT
*
4698646 GTGGTAACATGCCATGCATATAACGTAAA
65 GTGGTAACACGCCATGCATATAACGTAAA
*
4698675 AATGTGGTAACAGGCTATGCATATAACGAAAAATGTGGTAACACGCCATGTATATAACGTAAAAT
1 AATGTGGTAACAGGC-ATGCATATAACGAAAAATGTGGTAACACGCCATGCATATAACGTAAAAT
*
4698740 GTGGTAACACGCCATACATATAACGTAAA
65 GTGGTAACACGCCATGCATATAACGTAAA
* *
4698769 AATGTAGTAACACGCCATGCATATAACGAAAAATGTGGTAACACGCCATGCATATAACGTAAAAT
1 AATGTGGTAACA-GGCATGCATATAACGAAAAATGTGGTAACACGCCATGCATATAACGTAAAAT
* *
4698834 GTGATAACACGTCATGCATATAACGT-AA
65 GTGGTAACACGCCATGCATATAACGTAAA
*
4698862 AATGTGATAACA
1 AATGTGGTAACA
4698874 CGCCAATGCT
Statistics
Matches: 182, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
93 14 0.08
94 166 0.91
95 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (93 bp):
AATGTGGTAACAGGCATGCATATAACGAAAAATGTGGTAACACGCCATGCATATAACGTAAAATG
TGGTAACACGCCATGCATATAACGTAAA
Found at i:4698803 original size:125 final size:125
Alignment explanation
Indices: 4698581--4698878 Score: 472
Period size: 125 Copynumber: 2.4 Consensus size: 125
4698571 GTTAACCCAT
*
4698581 AATGTGGTAACACGACATGCATATAACGTAAAATGTGATAACACGCCATGCATATAACATAAAAT
1 AATGTGGTAACACGACATGCATATAACGTAAAATGTGATAACACGCCATACATATAACATAAAAT
* * * *
4698646 GTGGTAACATGCCATGCATATAACGTAAAAATGTGGTAACAGGCTATGCATATAACGAAA
66 GTAGTAACACGCCATGCATATAACGTAAAAATGTGGTAACACGCCATGCATATAACGAAA
* * * *
4698706 AATGTGGTAACACGCCATGTATATAACGTAAAATGTGGTAACACGCCATACATATAACGTAAAAA
1 AATGTGGTAACACGACATGCATATAACGTAAAATGTGATAACACGCCATACATATAACAT-AAAA
*
4698771 TGTAGTAACACGCCATGCATATAACG-AAAAATGTGGTAACACGCCATGCATATAACGTAA
65 TGTAGTAACACGCCATGCATATAACGTAAAAATGTGGTAACACGCCATGCATATAACGAAA
* *
4698831 AATGTGATAACACGTCATGCATATAACGTAAAATGTGATAACACGCCA
1 AATGTGGTAACACGACATGCATATAACGTAAAATGTGATAACACGCCA
4698879 ATGCTGACAC
Statistics
Matches: 158, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
125 130 0.82
126 28 0.18
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (125 bp):
AATGTGGTAACACGACATGCATATAACGTAAAATGTGATAACACGCCATACATATAACATAAAAT
GTAGTAACACGCCATGCATATAACGTAAAAATGTGGTAACACGCCATGCATATAACGAAA
Found at i:4699625 original size:47 final size:47
Alignment explanation
Indices: 4699571--4699951 Score: 239
Period size: 47 Copynumber: 7.9 Consensus size: 47
4699561 TGAACCTTAC
* *
4699571 CATGTCACAGATTCCCTCTATGGCGTGTCACGAACTCTAAACGCTGG
1 CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCTGG
* * **
4699618 CATGTCACAGATTCTCTCCATGGCGTGTCACAAACTCTGAA-TATAGG
1 CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCT-GG
* * * * *
4699665 -AGTGTCACAGATTCCCTCCATGCCGTGTCACAAACTTTGAATGCTAG
1 CA-TGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCTGG
* * * *
4699712 CGTGTAACAGATTCCCTCCATGGCATGTCACAAACTCT-AACCCT-G
1 CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCTGG
* * * **
4699757 CTGTGTCACACATTCCCACCATATCGTGTCACAAACTCTAAACCCTGTCGTGTTACAG
1 C-ATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAA--C-G-C-TG-----G
* * * * * * **
4699815 CCGTGTCACACATTCCCACCATGTCGTGTCACAAACTTTAAACCCTAT
1 -CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCTGG
* * * * * * * *
4699863 CGTGTCACACATGCCCACCATGCCATGTCACAAACTCTAAACCCTGC
1 CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCTGG
* * * * *
4699910 CGTGTCACACATTCCCACCATGCCATGTCACAAACTCTAAAC
1 CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAAC
4699952 CCTGTTGTGT
Statistics
Matches: 278, Mismatches: 38, Indels: 36
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 37 0.13
47 192 0.69
48 1 0.00
49 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
54 1 0.00
56 1 0.00
58 39 0.14
59 1 0.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (47 bp):
CATGTCACAGATTCCCTCCATGGCGTGTCACAAACTCTAAACGCTGG
Found at i:4699646 original size:23 final size:23
Alignment explanation
Indices: 4699573--4699696 Score: 65
Period size: 23 Copynumber: 5.3 Consensus size: 23
4699563 AACCTTACCA
* *
4699573 TGTCACAGATTCCCTCTATGGCG
1 TGTCACAGATTCTCTCCATGGCG
* *
4699596 TGTCAC-GA-ACTCTAAACGC-TGGCA
1 TGTCACAGATTCTCT---C-CATGGCG
4699620 TGTCACAGATTCTCTCCATGGCG
1 TGTCACAGATTCTCTCCATGGCG
* * **** *
4699643 TGTCACAAACTCTGAATATAGGAG
1 TGTCACAGATTCTCTCCAT-GGCG
* *
4699667 TGTCACAGATTCCCTCCATGCCG
1 TGTCACAGATTCTCTCCATGGCG
4699690 TGTCACA
1 TGTCACA
4699697 AACTTTGAAT
Statistics
Matches: 71, Mismatches: 22, Indels: 16
0.65 0.20 0.15
Matches are distributed among these distances:
21 3 0.04
22 3 0.04
23 33 0.46
24 26 0.37
25 2 0.03
26 4 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (23 bp):
TGTCACAGATTCTCTCCATGGCG
Found at i:4699846 original size:23 final size:23
Alignment explanation
Indices: 4699814--4699941 Score: 94
Period size: 23 Copynumber: 5.5 Consensus size: 23
4699804 TCGTGTTACA
4699814 GCCGTGTCACACATTCCCACCAT
1 GCCGTGTCACACATTCCCACCAT
* * *** *
4699837 GTCGTGTCACAAACTTTAAACCCT
1 GCCGTGTCACACA-TTCCCACCAT
** *
4699861 ATCGTGTCACACATGCCCACCAT
1 GCCGTGTCACACATTCCCACCAT
* * * ** *
4699884 GCCATGTCACAAACTCTAAACCCT
1 GCCGTGTCACACATTC-CCACCAT
4699908 GCCGTGTCACACATTCCCACCAT
1 GCCGTGTCACACATTCCCACCAT
*
4699931 GCCATGTCACA
1 GCCGTGTCACA
4699942 AACTCTAAAC
Statistics
Matches: 74, Mismatches: 29, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
23 40 0.54
24 34 0.46
ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23
Consensus pattern (23 bp):
GCCGTGTCACACATTCCCACCAT
Found at i:4699893 original size:105 final size:104
Alignment explanation
Indices: 4699712--4699914 Score: 273
Period size: 105 Copynumber: 1.9 Consensus size: 104
4699702 TGAATGCTAG
* * *
4699712 CGTGTAACAGATTCCCTCCATGGCATGTCACAAACTCTAACCCTGCTGTGTCACACATTCCCACC
1 CGTGTAACACATTCCCACCATGGCATGTCACAAACTCTAACCCTGCTGTGTCACACATGCCCACC
* * *
4699777 ATATCGTGTCACAAACTCTAAACCCTGTCGTGTTACAGC
66 ATACCATGTCACAAACTCTAAACCCTGCCGTGTTACAGC
* * * * *
4699816 CGTGTCACACATTCCCACCATGTCGTGTCACAAACTTTAAACCCT-ATCGTGTCACACATGCCCA
1 CGTGTAACACATTCCCACCATGGCATGTCACAAACTCT-AACCCTGCT-GTGTCACACATGCCCA
*
4699880 CCATGCCATGTCACAAACTCTAAACCCTGCCGTGT
64 CCATACCATGTCACAAACTCTAAACCCTGCCGTGT
4699915 CACACATTCC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
104 33 0.39
105 52 0.61
ACGTcount: A:0.26, C:0.35, G:0.14, T:0.25
Consensus pattern (104 bp):
CGTGTAACACATTCCCACCATGGCATGTCACAAACTCTAACCCTGCTGTGTCACACATGCCCACC
ATACCATGTCACAAACTCTAAACCCTGCCGTGTTACAGC
Found at i:4699915 original size:24 final size:24
Alignment explanation
Indices: 4699839--4699965 Score: 80
Period size: 24 Copynumber: 5.4 Consensus size: 24
4699829 CCCACCATGT
* **
4699839 CGTGTCACAAACTTTAAACCCTAT
1 CGTGTCACAAACTCTAAACCCTGC
* ** *
4699863 CGTGTCACACA-TGC-CCACCATGC
1 CGTGTCACAAACT-CTAAACCCTGC
*
4699886 CATGTCACAAACTCTAAACCCTGC
1 CGTGTCACAAACTCTAAACCCTGC
* * ** *
4699910 CGTGTCACACATTC-CCACCATGC
1 CGTGTCACAAACTCTAAACCCTGC
* *
4699933 CATGTCACAAACTCTAAACCCTGT
1 CGTGTCACAAACTCTAAACCCTGC
*
4699957 TGTGTCACA
1 CGTGTCACA
4699966 GTCGTGTCAC
Statistics
Matches: 72, Mismatches: 27, Indels: 8
0.67 0.25 0.07
Matches are distributed among these distances:
23 32 0.44
24 40 0.56
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.24
Consensus pattern (24 bp):
CGTGTCACAAACTCTAAACCCTGC
Found at i:4699975 original size:152 final size:151
Alignment explanation
Indices: 4699666--4699999 Score: 479
Period size: 152 Copynumber: 2.2 Consensus size: 151
4699656 GAATATAGGA
* * * * ** * * *
4699666 GTGTCACAGATTCCCTCCATGCCGTGTCACAAACTTTGAATGCTAGCGTGTAACAGATTCCCTCC
1 GTGTCACACATTCCCACCATGTCGTGTCACAAACTTTAAACCCTAGCGTGTAACACATGCCCACC
* * * *
4699731 ATGGCATGTCACAAACTCTAACCCTGCTGTGTCACACATTCCCACCATATCGTGTCACAAACTCT
66 ATGCCATGTCACAAACTCTAACCCTGCCGTGTCACACATTCCCACCATACCATGTCACAAACTCT
*
4699796 AAACCCTGTCGTGTTACAGCC
131 AAACCCTGTCGTGTCACAGCC
* *
4699817 GTGTCACACATTCCCACCATGTCGTGTCACAAACTTTAAACCCTATCGTGTCACACATGCCCACC
1 GTGTCACACATTCCCACCATGTCGTGTCACAAACTTTAAACCCTAGCGTGTAACACATGCCCACC
*
4699882 ATGCCATGTCACAAACTCTAAACCCTGCCGTGTCACACATTCCCACCATGCCATGTCACAAACTC
66 ATGCCATGTCACAAACTCT-AACCCTGCCGTGTCACACATTCCCACCATACCATGTCACAAACTC
* *
4699947 TAAACCCTGTTGTGTCACAGTC
130 TAAACCCTGTCGTGTCACAGCC
*
4699969 GTGTCACACATTCGCACCATGTCGTGTCACA
1 GTGTCACACATTCCCACCATGTCGTGTCACA
4700000 CATTCCCAAC
Statistics
Matches: 162, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
151 72 0.44
152 90 0.56
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (151 bp):
GTGTCACACATTCCCACCATGTCGTGTCACAAACTTTAAACCCTAGCGTGTAACACATGCCCACC
ATGCCATGTCACAAACTCTAACCCTGCCGTGTCACACATTCCCACCATACCATGTCACAAACTCT
AAACCCTGTCGTGTCACAGCC
Found at i:4700012 original size:23 final size:23
Alignment explanation
Indices: 4699966--4700012 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
4699956 TTGTGTCACA
* *
4699966 GTCGTGTCACACATTCGCACCAT
1 GTCGTGTCACACATTCCCAACAT
4699989 GTCGTGTCACACATTCCCAACAT
1 GTCGTGTCACACATTCCCAACAT
4700012 G
1 G
4700013 CCATTTCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.26
Consensus pattern (23 bp):
GTCGTGTCACACATTCCCAACAT
Found at i:4700021 original size:23 final size:23
Alignment explanation
Indices: 4699970--4700022 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
4699960 GTCACAGTCG
* * * *
4699970 TGTCACACATTCGCACCATGTCG
1 TGTCACACATTCCCAACATGCCA
4699993 TGTCACACATTCCCAACATGCCA
1 TGTCACACATTCCCAACATGCCA
*
4700016 TTTCACA
1 TGTCACA
4700023 AACTCTAAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.36, G:0.11, T:0.26
Consensus pattern (23 bp):
TGTCACACATTCCCAACATGCCA
Found at i:4700112 original size:21 final size:21
Alignment explanation
Indices: 4700088--4700141 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
4700078 CCATTTTGTG
*
4700088 CTTTGGATTCACATCTTTCTC
1 CTTTCGATTCACATCTTTCTC
4700109 CTTTCGATTCACATCTTTCTC
1 CTTTCGATTCACATCTTTCTC
4700130 CTTTCGATTCAC
1 CTTTCGATTCAC
4700142 CACCGTATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.31, G:0.07, T:0.46
Consensus pattern (21 bp):
CTTTCGATTCACATCTTTCTC
Found at i:4713458 original size:2 final size:2
Alignment explanation
Indices: 4713445--4713481 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
4713435 GATTTTGTGG
*
4713445 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4713482 TAGTTTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:4713565 original size:2 final size:2
Alignment explanation
Indices: 4713548--4713589 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
4713538 TTAATTAATA
*
4713548 AT AT AN AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4713589 A
1 A
4713590 GTATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4717296 original size:22 final size:23
Alignment explanation
Indices: 4717270--4717333 Score: 60
Period size: 27 Copynumber: 2.7 Consensus size: 23
4717260 TTATTAATTT
4717270 TTTTAAATATTAATAATCT-AGAA
1 TTTTAAATATTAATAAT-TAAGAA
*
4717293 TTTAATTAAAATATTAATAATTAATAA
1 -TT--TT-AAATATTAATAATTAAGAA
4717320 -TTTAAATATTAATA
1 TTTTAAATATTAATA
4717334 TTTTATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
22 11 0.31
23 2 0.06
24 2 0.06
25 1 0.03
26 3 0.09
27 16 0.46
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTTAAATATTAATAATTAAGAA
Found at i:4717349 original size:24 final size:23
Alignment explanation
Indices: 4717271--4717354 Score: 89
Period size: 22 Copynumber: 3.5 Consensus size: 23
4717261 TATTAATTTT
4717271 TTTAAATATTAATAATCTAGAATTTAA
1 TTTAAATATTAATAAT-T---ATTTAA
* *
4717298 TTAAAATATTAATAATTA-ATAA
1 TTTAAATATTAATAATTATTTAA
*
4717320 TTTAAATATTAATATTTTATTTAA
1 TTTAAATATTAATA-ATTATTTAA
4717344 TTTAAATATTA
1 TTTAAATATTA
4717355 TTATGATTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
22 16 0.32
23 4 0.08
24 14 0.28
26 1 0.02
27 15 0.30
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (23 bp):
TTTAAATATTAATAATTATTTAA
Found at i:4717815 original size:19 final size:19
Alignment explanation
Indices: 4717769--4717815 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
4717759 ATAATTGATA
*
4717769 ATTTA-AATATTAATATTTT
1 ATTTATAAT-TTAATATTAT
4717788 ATTTATAATTTAATATTAAT
1 ATTTATAATTTAATATT-AT
4717808 ATTT-TAAT
1 ATTTATAAT
4717816 AAAAATTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTATAATTTAATATTAT
Found at i:4717822 original size:25 final size:26
Alignment explanation
Indices: 4717768--4717822 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
4717758 AATAATTGAT
* * *
4717768 AATTTAAATATTAATATTTTATTTAT
1 AATTTAAATATTAATATTTTAATAAA
4717794 AATTT-AATATTAATATTTTAATAAA
1 AATTTAAATATTAATATTTTAATAAA
4717819 AATT
1 AATT
4717823 AGAATCAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
AATTTAAATATTAATATTTTAATAAA
Found at i:4722832 original size:22 final size:22
Alignment explanation
Indices: 4722774--4722832 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
4722764 TGATTTGTGA
*
4722774 TTTTTTTGGTTGTTTGAACTTGG
1 TTTTTTTGGTT-TTTCAACTTGG
* *
4722797 TTTTTCTTTGTTTTCCAA-TTGG
1 TTTTT-TTGGTTTTTCAACTTGG
4722819 TTTTTTTGGTTTTT
1 TTTTTTTGGTTTTT
4722833 TGGTTCTTGC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 7 0.23
22 9 0.30
23 9 0.30
24 5 0.17
ACGTcount: A:0.07, C:0.07, G:0.19, T:0.68
Consensus pattern (22 bp):
TTTTTTTGGTTTTTCAACTTGG
Found at i:4723057 original size:17 final size:18
Alignment explanation
Indices: 4723025--4723064 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
4723015 TCCTTTTTTT
4723025 TTATTATTATTATATATA
1 TTATTATTATTATATATA
* *
4723043 TTATT-TTATTTTATATT
1 TTATTATTATTATATATA
4723060 TTATT
1 TTATT
4723065 CTGTTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTATTATTATATATA
Found at i:4724912 original size:29 final size:29
Alignment explanation
Indices: 4724880--4725006 Score: 157
Period size: 29 Copynumber: 4.4 Consensus size: 29
4724870 TCTTTTTGTA
* *
4724880 TACCTATTCATATACAGCTTCCTCTCTTG
1 TACCTGTTCATATACAGCTTCTTCTCTTG
* *
4724909 TACCTGTTC-TCGTATAGCTTCTTCTCTTG
1 TACCTGTTCAT-ATACAGCTTCTTCTCTTG
* *
4724938 TACTTGTTCACATACAGCTTCTTCTCTTG
1 TACCTGTTCATATACAGCTTCTTCTCTTG
* *
4724967 TACTTGTTCACATACAGCTTCTTCTCTTG
1 TACCTGTTCATATACAGCTTCTTCTCTTG
*
4724996 TACCTTTTCAT
1 TACCTGTTCAT
4725007 GTATACCTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.01
29 84 0.99
ACGTcount: A:0.17, C:0.28, G:0.09, T:0.46
Consensus pattern (29 bp):
TACCTGTTCATATACAGCTTCTTCTCTTG
Found at i:4724996 original size:23 final size:27
Alignment explanation
Indices: 4724851--4724994 Score: 110
Period size: 29 Copynumber: 5.0 Consensus size: 27
4724841 TATTCTTGTA
* *
4724851 TACTTGTTCACATACA-CTTTCTTTTTGT
1 TACTTGTTCACATACAGC-TTC-TTCTCT
* * * *
4724879 ATACCTATTCATATACAGCTTCCTCTCTT
1 -TACTTGTTCACATACAGCTTCTTCTC-T
* * * *
4724908 GTACCTGTTCTCGTATAGCTTCTTCTCTT
1 -TACTTGTTCACATACAGCTTCTTCTC-T
4724937 GTACTTGTTCACATACAGCTTCTTCTCTT
1 -TACTTGTTCACATACAGCTTCTTCTC-T
4724966 GTACTTGTTCACATACAGCTTCTTCTCT
1 -TACTTGTTCACATACAGCTTCTTCTCT
4724994 T
1 T
4724995 GTACCTTTTC
Statistics
Matches: 96, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 1 0.01
28 3 0.03
29 91 0.95
30 1 0.01
ACGTcount: A:0.17, C:0.27, G:0.09, T:0.47
Consensus pattern (27 bp):
TACTTGTTCACATACAGCTTCTTCTCT
Found at i:4726307 original size:33 final size:34
Alignment explanation
Indices: 4726244--4726307 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
4726234 AATATAACTC
* * *
4726244 TTTGAATAGTTATACTATTGAAAGGTAACAATTG
1 TTTGAAAAGTTATACTATTAAAAGGAAACAATTG
*
4726278 TTTGAAAAGTTATATTA-TAAAAGGAAACAA
1 TTTGAAAAGTTATACTATTAAAAGGAAACAA
4726308 CTCTTTACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 11 0.42
34 15 0.58
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (34 bp):
TTTGAAAAGTTATACTATTAAAAGGAAACAATTG
Found at i:4727841 original size:34 final size:34
Alignment explanation
Indices: 4727796--4727863 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
4727786 TTGCTTATAC
*
4727796 TGTTGAATATTCTTCTGATTTATAGCACGCTAGA
1 TGTTGAATATTCTTCTGATATATAGCACGCTAGA
* *
4727830 TGTTGAGTATTCTTTTGATATATAGCACGCTAGA
1 TGTTGAATATTCTTCTGATATATAGCACGCTAGA
4727864 CTAGGTCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (34 bp):
TGTTGAATATTCTTCTGATATATAGCACGCTAGA
Found at i:4734173 original size:28 final size:27
Alignment explanation
Indices: 4734120--4734173 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
4734110 ATGTCCTGGT
** *
4734120 GGTGGAAAATTACTGTTTTGCCCCTAG
1 GGTGGAAAATTACCATTTTACCCCTAG
*
4734147 GGTGGTAAAATTACCATTTTACTCCTA
1 GGTGG-AAAATTACCATTTTACCCCTA
4734174 TGCTCTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTGGAAAATTACCATTTTACCCCTAG
Found at i:4738914 original size:17 final size:17
Alignment explanation
Indices: 4738881--4738914 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4738871 TTAAAATCAT
*
4738881 TAATATTTTAATCATAA
1 TAATATTTGAATCATAA
*
4738898 TAATATTTGAATTATAA
1 TAATATTTGAATCATAA
4738915 ATAAAATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (17 bp):
TAATATTTGAATCATAA
Found at i:4738927 original size:26 final size:28
Alignment explanation
Indices: 4738898--4738952 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
4738888 TTAATCATAA
*
4738898 TAATATTTGAATTAT-AAATA-AAATAT
1 TAATATTTAAATTATCAAATATAAATAT
*
4738924 TAATATTTAAATTATCAATTATAAATAT
1 TAATATTTAAATTATCAAATATAAATAT
4738952 T
1 T
4738953 TTAAATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 14 0.56
27 4 0.16
28 7 0.28
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (28 bp):
TAATATTTAAATTATCAAATATAAATAT
Found at i:4738964 original size:27 final size:28
Alignment explanation
Indices: 4738931--4738986 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
4738921 TATTAATATT
*
4738931 TAAATTATCAATTATAAATA-TTTTAAA
1 TAAATTATAAATTATAAATATTTTTAAA
*
4738958 TAAATTATAAATTATTAATATTTTTAAA
1 TAAATTATAAATTATAAATATTTTTAAA
4738986 T
1 T
4738987 TTAAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
TAAATTATAAATTATAAATATTTTTAAA
Found at i:4739741 original size:14 final size:14
Alignment explanation
Indices: 4739706--4739741 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
4739696 AGATATAAAA
4739706 TTTTTAATTAAATT
1 TTTTTAATTAAATT
* *
4739720 TTTATAATTAAGTT
1 TTTTTAATTAAATT
4739734 TTTTTAAT
1 TTTTTAAT
4739742 ATTTTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (14 bp):
TTTTTAATTAAATT
Found at i:4741468 original size:18 final size:18
Alignment explanation
Indices: 4741432--4741470 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
4741422 ATGTAAAATC
*
4741432 ATATTTTATTTAATTCTA
1 ATATTTTATTTAATACTA
4741450 ATATTTTAATTT-ATACTA
1 ATATTTT-ATTTAATACTA
4741468 ATA
1 ATA
4741471 AGTAAGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
ATATTTTATTTAATACTA
Found at i:4746027 original size:30 final size:30
Alignment explanation
Indices: 4745991--4746052 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
4745981 ATACATAAGC
* * *
4745991 ATGTTTAAAATAGCTTTGTGAATGCTTTTG
1 ATGTTTAAAATAGCATAGGGAATGCTTTTG
*
4746021 ATGTTTAGAATAGCATAGGGAATGCTTTTG
1 ATGTTTAAAATAGCATAGGGAATGCTTTTG
4746051 AT
1 AT
4746053 AAAAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (30 bp):
ATGTTTAAAATAGCATAGGGAATGCTTTTG
Found at i:4747575 original size:45 final size:45
Alignment explanation
Indices: 4747512--4747605 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 45
4747502 AATATATTAA
* * * * *
4747512 TATTATTTCACTATAATAAGTATTATAAAGCATATTACTTAATAT
1 TATTATTTCAATACAATAAATATGATAAAGAATATTACTTAATAT
* * * *
4747557 TATTATTTGAATACAATAAATGTGATAAAGAATATTATTTAGTAT
1 TATTATTTCAATACAATAAATATGATAAAGAATATTACTTAATAT
4747602 TATT
1 TATT
4747606 TAAATTTAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (45 bp):
TATTATTTCAATACAATAAATATGATAAAGAATATTACTTAATAT
Found at i:4747861 original size:51 final size:50
Alignment explanation
Indices: 4747804--4747904 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 50
4747794 TATCTTTTAA
4747804 CAAAATAAATTCTTTAATTTTAATAAAAAGTATTTATTTCTCATCATAGT
1 CAAAATAAATTCTTTAATTTTAATAAAAAGTATTTATTTCTCATCATAGT
4747854 NCAAAATAAATTCTTTAATTTTAATAAAAAGTATTTATTTCTCATCATAGT
1 -CAAAATAAATTCTTTAATTTTAATAAAAAGTATTTATTTCTCATCATAGT
4747905 TTTTTTGTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (50 bp):
CAAAATAAATTCTTTAATTTTAATAAAAAGTATTTATTTCTCATCATAGT
Found at i:4751640 original size:36 final size:37
Alignment explanation
Indices: 4751600--4751669 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
4751590 AGCATAACCT
*
4751600 TTACAAACCACTA-TTTTCATGGATTAAGCATAATTA
1 TTACAAACCACTACCTTTCATGGATTAAGCATAATTA
* *
4751636 TTACAATCCATTACCTTTCATGGATTAAGCATAA
1 TTACAAACCACTACCTTTCATGGATTAAGCATAA
4751670 CCTTTACCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 11 0.37
37 19 0.63
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.36
Consensus pattern (37 bp):
TTACAAACCACTACCTTTCATGGATTAAGCATAATTA
Found at i:4751724 original size:30 final size:30
Alignment explanation
Indices: 4751644--4751762 Score: 122
Period size: 30 Copynumber: 4.1 Consensus size: 30
4751634 TATTACAATC
* * *
4751644 CATTACCTTTC-ATGGATTAAGCATAACCT
1 CATTACTTTTCAAAGGATCAAGCATAACCT
*
4751673 --TTACCTTTTTAAAGG-TCAAGCATAACCT
1 CATTA-CTTTTCAAAGGATCAAGCATAACCT
* * *
4751701 CACTACTTTTCAATGGATCAAGCATAAGCT
1 CATTACTTTTCAAAGGATCAAGCATAACCT
4751731 CATTACTATTT-AAAGGATCAAGCATAACCT
1 CATTACT-TTTCAAAGGATCAAGCATAACCT
4751761 CA
1 CA
4751763 ACCCTTTCAA
Statistics
Matches: 73, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
27 3 0.04
28 16 0.22
29 12 0.16
30 39 0.53
31 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (30 bp):
CATTACTTTTCAAAGGATCAAGCATAACCT
Found at i:4751761 original size:60 final size:57
Alignment explanation
Indices: 4751651--4751762 Score: 154
Period size: 60 Copynumber: 1.9 Consensus size: 57
4751641 ATCCATTACC
* * *
4751651 TTTCATGGATTAAGCATAACCTTTACCTTTTTAAAGGTCAAGCATAACCTCACTACT
1 TTTCATGGATCAAGCATAACCATTACCTATTTAAAGGTCAAGCATAACCTCACTACT
4751708 TTTCAATGGATCAAGCATAAGCTCATTA-CTATTTAAAGGATCAAGCATAACCTCA
1 TTTC-ATGGATCAAGCATAA-C-CATTACCTATTTAAAGG-TCAAGCATAACCTCA
4751763 ACCCTTTCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
57 4 0.08
58 14 0.29
59 11 0.23
60 19 0.40
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (57 bp):
TTTCATGGATCAAGCATAACCATTACCTATTTAAAGGTCAAGCATAACCTCACTACT
Found at i:4752407 original size:17 final size:18
Alignment explanation
Indices: 4752374--4752407 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4752364 AATCAACATT
4752374 TTCTTCACCAGGTGTTGA
1 TTCTTCACCAGGTGTTGA
*
4752392 TTCTTCATCA-GTGTTG
1 TTCTTCACCAGGTGTTG
4752408 GGTGCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.44
Consensus pattern (18 bp):
TTCTTCACCAGGTGTTGA
Found at i:4756559 original size:75 final size:76
Alignment explanation
Indices: 4756466--4756626 Score: 252
Period size: 75 Copynumber: 2.1 Consensus size: 76
4756456 AATACCATCT
* *
4756466 ATTTTAATTTTGGGTGATTGATAAAAATAGAAAATTGTTTCCTACTTTAAAAGCAATTC-TAAAA
1 ATTTTAATTTTGGGTGATTCATAAAAATAGAAAATTGTTTCCTACTTTAAAAGAAATTCTTAAAA
4756530 TTAAGGACAGA
66 TTAAGGACAGA
* *
4756541 ATTTTAATTTTGGGTGATTCATAAAAGTAGGAAATTGTTTCCTACTTTAAAAGAAATTCTTAAAA
1 ATTTTAATTTTGGGTGATTCATAAAAATAGAAAATTGTTTCCTACTTTAAAAGAAATTCTTAAAA
* * *
4756606 TTAGGGATAGT
66 TTAAGGACAGA
4756617 ATTTTAATTT
1 ATTTTAATTT
4756627 GAAAAATTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
75 55 0.71
76 23 0.29
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.40
Consensus pattern (76 bp):
ATTTTAATTTTGGGTGATTCATAAAAATAGAAAATTGTTTCCTACTTTAAAAGAAATTCTTAAAA
TTAAGGACAGA
Done.