Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 20 of 30
Found at i:7101405 original size:13 final size:13
Alignment explanation
Indices: 7101387--7101411 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7101377 TTTCAGAAAA
7101387 TTTATAAAATCAT
1 TTTATAAAATCAT
7101400 TTTATAAAATCA
1 TTTATAAAATCA
7101412 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7110877 original size:172 final size:171
Alignment explanation
Indices: 7110517--7111242 Score: 763
Period size: 172 Copynumber: 4.3 Consensus size: 171
7110507 AGGTGTGAAC
* * * * *
7110517 GACTATAAGTGAACTTTTCTAGTCAATGGATGGCTTTCGCTTCAAGTTTCTCGAGGCAAACACTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTC
* * * * * *
7110582 AATCATAATGTGTTTTAACAAAAAATGTAAAACAATTTAAGTTAAGATCAATAATGAGATTATAA
66 AATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
* * * ** *
7110647 TACCATTTAAAGTGAGTAATAAGGCTTTCAAAGATATAAGT
131 AACCATTTAAAATGAATAATAAGGCTTTCAAAGGCATTAGT
* * * * * * * *
7110688 GGCTATAAATAGACTTTTCTTGTCAATGGATGACTTTCGATTCATGTTTCCCAAGGGAAACATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTC
* * * * *
7110753 AATTATAATCTATTTTAACAAAAAAAAGTAAAAAAATTCAACTTAAAATCAGTAATGAAAGTATA
66 AATTATAATCTGTTTTAAC-AAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* **
7110818 AAATCATTTAAAATGAATAATAAGGCTTTTGAAGGCATTAGT
130 AAACCATTTAAAATGAATAATAAGGCTTTCAAAGGCATTAGT
* *
7110860 GAGTATAAATGGACTTTTCTTGT-ATATTGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATT
1 GACTATAAATGGACTTTTCTTGTCA-ATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATT
* * * * * *
7110924 CAACTATAATATGTTTTAACCAAAAATCTAAAAAAAATTCAACTTAAAATAAATTATGAGATTAT
65 CAATTATAATCTGTTTTAACAAAAAATGT-AAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* ** *
7110989 AAAACCATTT-AAA-GCAAGCAATAAGAATTTCAAAGCCATTAGT
129 AAAACCATTTAAAATG-AA-TAATAAGGCTTTCAAAGGCATTAGT
* * * * * * *
7111032 GACTATAACTGAACTTTTCTTCTCAATTGTTGGCTTTCGCATCACGTTT-T------AAACAATC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTC
* * * * *
7111090 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAAGTTAATAGCAATAATGAGATTAGAA
66 AATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
** * *
7111155 AACCATTTAAAGCGAGTAATAAGGCTTTCAAA-GCATGAGT
131 AACCATTTAAAATGAATAATAAGGCTTTCAAAGGCATTAGT
**
7111195 GACTATAAATGGACTTTTCTTGTCAATGGATATCTTTCGCTTCACGTT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
7111243 CAATGGATGG
Statistics
Matches: 456, Mismatches: 91, Indels: 24
0.80 0.16 0.04
Matches are distributed among these distances:
163 46 0.10
164 52 0.11
165 35 0.08
166 1 0.00
170 1 0.00
171 82 0.18
172 238 0.52
173 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTC
AATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
AACCATTTAAAATGAATAATAAGGCTTTCAAAGGCATTAGT
Found at i:7111256 original size:25 final size:25
Alignment explanation
Indices: 7111217--7111267 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7111207 ACTTTTCTTG
* * *
7111217 TCAATGGATATCTTTCGCTTCACGT
1 TCAATGGATAGCTTTCACATCACGT
*
7111242 TCAATGGATGGCTTTCACATCACGT
1 TCAATGGATAGCTTTCACATCACGT
7111267 T
1 T
7111268 TCTCAAGGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (25 bp):
TCAATGGATAGCTTTCACATCACGT
Found at i:7111562 original size:171 final size:171
Alignment explanation
Indices: 7111242--7115286 Score: 5621
Period size: 171 Copynumber: 23.6 Consensus size: 171
7111232 CGCTTCACGT
** * * * * **
7111242 TCAATGGATGGCTTTCACATCACGTTTCTCAAGGCAAACATTTAATTATAACCTTTGTTAATTGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
** * * *
7111307 AAATGTAAAAAAATTCAACTTAAAGTCAATAATGAGATTATAAAACCATTTAAAGCGAATAATTA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* ** *
7111372 GGATTTTGAAGGCAT-GAGTGACTATAAGTGGACTTTTCTTG
131 GGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * * * ** *
7111413 TCAATGGATGGCTTTCGTTTCACGTTTCTTGAGGCAAACATTCAATTATAATATGTT-TTAACCA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCT-TTCTTAACCG
** * * * * *
7111477 AAAATGTAAAAAAATTCAACTTAAAACCAATTATGAGATTATAAAATCATTTTAAGTGAGTAATA
65 AAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
7111542 AGGCTTCCGAAGGAAT-GAGTGACTATAAAAGCACTTTTCTTG
130 AGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * * * * * * * * *
7111584 TCTATCGATGGCTGTCGCTTAACGTTTCAT-TAGGTAAACATTCAACTATAA-TTTATTTTACCC
1 TCAATGGATGGCTTTTGCTTCACGTTTC-TCGAGGTAAACATTTAATTATAACCTT-TCTTAACC
* ** *
7111647 AAAAATGTAAAAAAAATTCAACTTAAAATGAATAATGAGATTATAAAACCATTTGAAA-CGAGTA
64 GAAAACAT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTT-AAAGCGAGTA
* *
7111711 ATAAAGCTTTCAAAGGCAT-GAGTGACTATAAATGGACTTTTTTTG
127 ATAAGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
** * * * * * * * *
7111756 TCAATCAATGGCTTTCGCTTCATGTTTCCTC-AAGCAAACATTCAACTATAATCTGTT-TAAACC
1 TCAATGGATGGCTTTTGCTTCACGTTT-CTCGAGGTAAACATTTAATTATAACCT-TTCTTAACC
* ** * *
7111819 AAAAATTTTAAAAAAATTCAACTTAAAATGAATAATTAGATTATAAAACCATTTAAAGCGAGTAA
64 GAAAA-CATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * **
7111884 TAAAGCTTTCGAAGGTAT-GAGTGACTATAAATACACTTTTCTTG
128 TAAGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* ** * * * * * *
7111928 TCAATTGACAGCTTTCGCTTCATGTTTCTTGAGGCAAACATTCAATTATAATCTGTT-TTAACC-
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCT-TTCTTAACCG
* * * * * *
7111991 AAAACTGTAAAACAATTCAACTTAAAATCAATAATGAGATTATAAAATCGTTTAGAGTGAGTAAT
65 AAAAC-ATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAAT
** * * *
7112056 AAGGCTTTTGAAGGCAT-GAGTAACTATGAATGGACTTTTCTTC
129 AAGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * * * *
7112099 CCAATGGATGGCTTTCGCTTCAAGTTTC-CTGAGGTAAATATTCAATTATAATCTGTT-TTAACC
1 TCAATGGATGGCTTTTGCTTCACGTTTCTC-GAGGTAAACATTTAATTATAACCT-TTCTTAACC
* * * * * * *
7112162 AAAAAAATAAAAAAA-TCAACTGAAAATCAATTATGAGA-TAAAAAACCATTTAAATCAAGTAAT
64 GAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * ** *
7112225 AAAGATTTCGAAGGCAT-GAACGACTATAAATGGATTTTTCTTG
129 AAGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * * * * * *
7112268 TCAATCGTTGGCTTTCGCTTCATG-CTCTCCGAGGTAAACATTCAATTATAATCTGTT-TTAACA
1 TCAATGGATGGCTTTTGCTTCACGTTTCT-CGAGGTAAACATTTAATTATAACCT-TTCTTAACC
* ** *
7112331 AAAAATGTAAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGAGAGTAA
64 GAAAACAT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAA
* ** * *
7112396 TAAAGGTTTTTGAAGGCATAAGTGACTATAAGTGGACTTTTCTTG
128 T-AAGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
** * * * * * ** *
7112441 TCAATGGATGGCTTTCACATCATGTTTCTTGAGGCAAACATTCAATTATAATATGTT-TTAACCA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCT-TTCTTAACCG
** *
7112505 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
65 AAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATA
7112570 AGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
130 AGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7112612 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7112677 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7112742 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7112783 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7112848 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7112913 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7112954 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7113019 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7113084 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7113125 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7113190 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7113255 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7113296 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7113361 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7113426 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7113467 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7113532 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7113597 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7113638 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7113703 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7113768 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7113809 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7113874 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7113939 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7113980 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7114045 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7114110 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7114151 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7114216 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7114281 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7114322 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7114387 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
7114452 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
131 GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
*
7114493 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
7114558 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* *
7114623 GGCTTTCAAAGGCAT-GAGTGACTATAAATAGACCTTTCTTG
131 GGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * * **
7114664 TCAATAGATGGCTTTTACATCACGTTTCTCGAGGTAAACATTTAATTATAAGCTTTCTTAACTAA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
** * * * * *
7114729 AAATGTAAAAATATTCAACTTAAAA-CTAATTATGAGATTATAAAACTATTTTAAGTGAGTAATA
66 AAACATAAAAAAATTCAACTTAAAATC-AATAATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * *
7114793 AGGC-TTCTGAAGGCAT-GAGTGATTATAAATGCACTTTTGTTG
130 AGGCTTTC-AAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* ** * * * * *
7114835 TCAATCGATGGCTTTCACTTAACGTTTTCTC-AGGCAAACATTCAACTATAATCTGTT-TTAACC
1 TCAATGGATGGCTTTTGCTTCACG-TTTCTCGAGGTAAACATTTAATTATAACCT-TTCTTAACC
* ** * * *
7114898 AAAAATGTAAAAACAAATTCAACTTAAAATGAATAATGGGATTATAAAACCATTTAAAGCAAGTA
64 GAAAACAT-AAAA-AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTA
* * *
7114963 ATAAAGCTTTCGAAGGCAT-GAGTTACTATAAATGGACTTTTCTTG
127 ATAAGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * * *
7115008 TCAATGGATGGCTTGTGCTTCATGTTTCTTGAGGCAAACATTTAATTATAACCTTTCTTAATCGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
** * * *
7115073 AAATGTTAAAAAATTCAAC-TAACAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATA
66 AAACATAAAAAAATTCAACTTAA-AATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATA
** * * *
7115137 AAACTTTCGAAGGCAT-GAGTGACAATAAATGGACTTTTGTTG
130 AGGCTTTCAAAGGCATAG-GTGACTATAAATGGACTTTTCTTG
* * * ** * *
7115179 TCAATTGATGGCTTTTGCTTCATGTTTCTCAAGGCCAAGATTTAATTATAACCTTTCTTAACTGA
1 TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
** * *
7115244 AAATGTAAAAAAATTCAACTTGAAATCAATAATGAGAGTATAA
66 AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
7115287 GGGTTCTGAA
Statistics
Matches: 3585, Mismatches: 251, Indels: 76
0.92 0.06 0.02
Matches are distributed among these distances:
168 2 0.00
169 110 0.03
170 41 0.01
171 2815 0.79
172 383 0.11
173 227 0.06
174 7 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (171 bp):
TCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCGA
AAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
GGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTG
Found at i:7112648 original size:513 final size:512
Alignment explanation
Indices: 7110493--7115681 Score: 6109
Period size: 513 Copynumber: 10.1 Consensus size: 512
7110483 GGGCTTGACA
* ** ** * * * *
7110493 AATAAGGATTTCAAAGGTGTGAACGACTATAAGTGAACTTTTCTAGTCAATGGATGGCTTTCGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * * ** * ** * *
7110558 TCAAGTTTCTCGAGGCAAACACTCAATCATAATGTGTT-TTAACAAAAAATGTAAAACAATTTAA
66 TCACGTTTCTCGAGGTAAACATTTAATTATAACCT-TTCTTAACCAAAAACATAAAAAAATTCAA
* * * * **
7110622 GTTAAGATCAATAATGAGATTATAATACCATTTAAAGTGAGTAATAAGGCTTTCAAAGATATAAG
130 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCAT-AG
* * * * * * * *
7110687 TGGCTATAAATAGACTTTTCTTGTCAATGGATGACTTTCGATTCATGTTTCCCAAGGGAAACATT
194 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
* * * * * *
7110752 CAATTATAATCTATT-TTAACAAAAAAAAGTAAAAAAATTCAACTTAAAATCAGTAATGAAAGTA
259 CAATTATAACCT-TTCTTAAC-CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTA
* ** * ** * *
7110816 TAAAATCATTTAAAATGAATAATAAGGCTTTTGAAGGCATTAGTGAGTATAAATGGACTTTTCTT
322 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTT
* * **
7110881 GT-ATATTGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAACTATAATATGTT-TTAAC
387 GTCA-ATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCT-TTCTTAAC
* * * * *
7110944 CAAAAATCTAAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGC
450 CAAAAATGT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
** * * * * * * * * *
7111008 AATAAGAATTTCAAAGCCATTAGTGACTATAACTGAACTTTTCTTCTCAATTGTTGGCTTTCGCA
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * **
7111073 TCACG-TT-T-----TAAACAATCAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCAA
66 TCACGTTTCTCGAGGTAAACATTTAATTATAACCT-TTCTTAACCAAAAACATAAAAAAATTCAA
* * * *
7111130 GTTAATAGCAATAATGAGATTAGAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAA-GCATGAG
130 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCAT-AG
*
7111194 TGACTATAAATGGACTTTTCTTGTCAATGGATATCTTTCGCTTCACGTTCAATGGATGGCTTTCA
194 TGACTATAAATGGACTTTTCTTGTCAATGG--A----TGGC-T----TTC--------GC--T--
* * * * ***
7111259 CATCACGTTTCTCAAGGCAAACATTTAATTATAACCTTTGTTAATTGAAAATGTAAAAAAATTCA
236 --TCACGTTTCTCGAGGTAAACATTCAATTATAACCTTTCTTAACCAAAAATGTAAAAAAATTCA
* * * * ** *
7111324 ACTTAAAGTCAATAATGAGATTATAAAACCATTTAAAGCGAATAATTAGGATTTTGAAGGCATGA
299 ACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAA
* * *
7111389 GTGACTATAAGTGGACTTTTCTTGTCAATGGATGGCTTTCGTTTCACGTTTCTTGAGGCAAACAT
364 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACAT
** * *
7111454 TCAATTATAATATGTT-TTAACCAAAAATGTAAAAAAATTCAACTTAAAACCAATTATGAGATTA
429 TCAATTATAACCT-TTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTA
* * *
7111518 TAAAATCATTTTAAGTGAGT
493 TAAAACCATTTAAAGCGAGT
* * * * * * * * *
7111538 AATAAGGCTTCCGAAGGAATGAGTGACTATAAAAGCACTTTTCTTGTCTATCGATGGCTGTCGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * * * * **
7111603 TAACGTTTCAT-TAGGTAAACATTCAACTATAA-TTTATTTTACCCAAAAATGTAAAAAAAATTC
66 TCACGTTTC-TCGAGGTAAACATTTAATTATAACCTT-TCTTAACCAAAAACAT-AAAAAAATTC
* *
7111666 AACTTAAAATGAATAATGAGATTATAAAACCATTTGAAA-CGAGTAATAAAGCTTTCAAAGGCAT
128 AACTTAAAATCAATAATGAGATTATAAAACCATTT-AAAGCGAGTAATAAGGCTTTCAAAGGCAT
* ** * * *
7111730 GAGTGACTATAAATGGACTTTTTTTGTCAATCAATGGCTTTCGCTTCATGTTTCCTC-AAGCAAA
192 -AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CTCGAGGTAAA
* * * * * *
7111794 CATTCAACTATAATCTGTT-TAAACCAAAAATTTTAAAAAAATTCAACTTAAAATGAATAATTAG
255 CATTCAATTATAACCT-TTCTTAACCAAAAA-TGTAAAAAAATTCAACTTAAAATCAATAATGAG
* * * * **
7111858 ATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTCGAAGGTATGAGTGACTATAAATACACTTT
318 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTT
* ** * * *
7111923 TCTTGTCAATTGACAGCTTTCGCTTCATGTTTCTTGAGGCAAACATTCAATTATAATCTGTT-TT
383 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCT-TTCTT
* * * * * *
7111987 AACCAAAACTGTAAAACAATTCAACTTAAAATCAATAATGAGATTATAAAATCGTTTAGAGTGAG
447 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAG
7112052 T
512 T
** * * ** *
7112053 AATAAGGCTTTTGAAGGCATGAGTAACTATGAATGGACTTTTCTTCCCAATGGATGGCTTTCGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* * * * *
7112118 TCAAGTTTC-CTGAGGTAAATATTCAATTATAATCTGTT-TTAACCAAAAAAATAAAAAAA-TCA
66 TCACGTTTCTC-GAGGTAAACATTTAATTATAACCT-TTCTTAACCAAAAACATAAAAAAATTCA
* * * * * * * *
7112180 ACTGAAAATCAATTATGAGA-TAAAAAACCATTTAAATCAAGTAATAAAGATTTCGAAGGCATGA
129 ACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCAT-A
** * * * * *
7112244 ACGACTATAAATGGATTTTTCTTGTCAATCGTTGGCTTTCGCTTCATG-CTCTCCGAGGTAAACA
193 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CGAGGTAAACA
* *
7112308 TTCAATTATAATCTGTT-TTAACAAAAAATGTAAAAAAAATTCAACTTAAAATCAATAATGAGAT
257 TTCAATTATAACCT-TTCTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATAATGAGAT
* * ** *
7112372 TATAAAACCATTTAAAGAGAGTAATAAAGGTTTTTGAAGGCATAAGTGACTATAAGTGGACTTTT
320 TATAAAACCATTTAAAGCGAGTAAT-AAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTT
* * * * **
7112437 CTTGTCAATGGATGGCTTTCACATCATGTTTCTTGAGGCAAACATTCAATTATAATATGTT-TTA
384 CTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCT-TTCTTA
*
7112501 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
448 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
7112566 AATAAGGCTTTCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
1 AATAAGGCTTTCAAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
* *
7112630 TTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAA
65 TTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAA
7112695 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGG
130 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATA-G
*
7112760 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATT
194 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
* * * **
7112825 TATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
259 CAATTATAACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
*
7112890 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTGT
324 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * * *
7112955 CAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAA
389 CAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCTTTCTTAACCAAA
**
7113020 AACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
454 AATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
7113079 AATAAGGCTTTCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
1 AATAAGGCTTTCAAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
* *
7113143 TTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAA
65 TTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAA
7113208 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGG
130 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATA-G
*
7113273 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATT
194 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
* * * **
7113338 TATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
259 CAATTATAACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
*
7113403 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTGT
324 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * * *
7113468 CAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAA
389 CAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCTTTCTTAACCAAA
**
7113533 AACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
454 AATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
7113592 AATAAGGCTTTCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
1 AATAAGGCTTTCAAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
* *
7113656 TTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAA
65 TTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAA
7113721 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGG
130 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATA-G
*
7113786 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATT
194 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
* * * **
7113851 TATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
259 CAATTATAACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
*
7113916 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTGT
324 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * * *
7113981 CAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAA
389 CAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCTTTCTTAACCAAA
**
7114046 AACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
454 AATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
7114105 AATAAGGCTTTCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
1 AATAAGGCTTTCAAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
* *
7114169 TTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAA
65 TTCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAA
7114234 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGG
130 CTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATA-G
*
7114299 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATT
194 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
* * * **
7114364 TATTTATAACCTTTCTTAACCGAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
259 CAATTATAACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
*
7114429 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATGGACTTTTCTTGT
324 AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * * *
7114494 CAATGGATGGCTTTTGCTTCACGTTTCTCGAGGTAAACATTTATTTATAACCTTTCTTAACCGAA
389 CAATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCTTTCTTAACCAAA
**
7114559 AACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
454 AATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *
7114618 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACCTTTCTTGTCAATAGATGGCTTTTACA
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* * ** *
7114683 TCACGTTTCTCGAGGTAAACATTTAATTATAAGCTTTCTTAACTAAAAATGTAAAAATATTCAAC
66 TCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAAC
* * * * *
7114748 TTAAAA-CTAATTATGAGATTATAAAACTATTTTAAGTGAGTAATAAGGC-TTCTGAAGGCATGA
131 TTAAAATC-AATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-AAAGGCAT-A
* * * * * * *
7114811 GTGATTATAAATGCACTTTTGTTGTCAATCGATGGCTTTCACTTAACGTTTTCTC-AGGCAAACA
193 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCTCGAGGTAAACA
* * * *
7114875 TTCAACTATAATCTGTT-TTAACCAAAAATGTAAAAACAAATTCAACTTAAAATGAATAATGGGA
257 TTCAATTATAACCT-TTCTTAACCAAAAATGT-AAAA-AAATTCAACTTAAAATCAATAATGAGA
* * * * *
7114939 TTATAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGCATGAGTTACTATAAATGGACTTTT
319 TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTT
* * *
7115004 CTTGTCAATGGATGGCTTGT-GCTTCATGTTTCTTGAGGCAAACATTTAATTATAACCTTTCTTA
384 CTTGTCAATGGATGGCTT-TCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCTTTCTTA
* * * *
7115068 ATCGAAAATGTTAAAAAATTCAAC-TAACAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
448 ACCAAAAATGTAAAAAAATTCAACTTAA-AATCAATAATGAGATTATAAAACCATTTAAAGCGAG
*
7115132 A
512 T
** * * * *
7115133 AATAAAACTTTCGAAGGCATGAGTGACAATAAATGGACTTTTGTTGTCAATTGATGGCTTTTGCT
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* * ** * ** **
7115198 TCATGTTTCTCAAGGCCAAGATTTAATTATAACCTTTCTTAACTGAAAATGTAAAAAAATTCAAC
66 TCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAAC
* * * *
7115263 TTGAAATCAATAATGAGA--GT------A--T-AAG-G-GT--T----C--T-GAAGGCATTAAT
131 TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCA-TAGT
*
7115306 GACTATAAATGGACTTTTCTTGT-ATATCGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
195 GACTATAAATGGACTTTTCTTGTCA-ATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
** * *
7115370 CAATTATAATATGTT-TTAATCAAAAATGTAAAAAAATTCAACTTAAAAT-ACATTATGAGATTA
259 CAATTATAACCT-TTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA-ATAATGAGATTA
* * * * * ** *
7115433 TAAAACCATTTAAAGCAAGCAATAAGAAC-TTCAAAGCCATTAGTGACTATAACA-AAACTTTTT
322 TAAAACCATTTAAAGCGAGTAATAAG-GCTTTCAAAGGCATAAGTGACTATAA-ATGGACTTTTC
* * * * * * **
7115496 TTCTCAATGGTTAGCTTTCG-TATCACGTTTCTTGAGGTAAACAATCAATTATAATATGTT-TTA
385 TTGTCAATGGATGGCTTTCGCT-TCACGTTTCTCGAGGCAAACATTCAATTATAACCT-TTCTTA
** * *
7115559 AGAAAAAATGTAAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCGAG
448 ACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAG
7115624 T
512 T
* ** *
7115625 AACAAGGCTTTGGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGGATGG
1 AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
7115682 TTTCATTTCA
Statistics
Matches: 4221, Mismatches: 371, Indels: 187
0.88 0.08 0.04
Matches are distributed among these distances:
490 3 0.00
491 130 0.03
492 111 0.03
493 87 0.02
494 1 0.00
495 1 0.00
496 1 0.00
500 1 0.00
502 2 0.00
503 1 0.00
504 3 0.00
505 1 0.00
507 33 0.01
508 94 0.02
509 1 0.00
510 2 0.00
511 7 0.00
512 173 0.04
513 2195 0.52
514 141 0.03
515 784 0.19
516 7 0.00
517 1 0.00
518 4 0.00
520 2 0.00
526 1 0.00
528 4 0.00
530 100 0.02
531 162 0.04
532 36 0.01
533 4 0.00
535 1 0.00
536 2 0.00
537 29 0.01
538 59 0.01
539 37 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (512 bp):
AATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
TCACGTTTCTCGAGGTAAACATTTAATTATAACCTTTCTTAACCAAAAACATAAAAAAATTCAAC
TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGTG
ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCA
ATTATAACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAA
ACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCA
ATGGATGGCTTTCGCTTCACGTTTCTCGAGGCAAACATTCAATTATAACCTTTCTTAACCAAAAA
TGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
Found at i:7115428 original size:149 final size:149
Alignment explanation
Indices: 7115145--7115435 Score: 356
Period size: 149 Copynumber: 2.0 Consensus size: 149
7115135 TAAAACTTTC
* * * * *
7115145 GAAGGCATGAGTGACAATAAATGGACTTTTGTTGTCAATTGATGGCTTTTGCTTCATGTTTCTCA
1 GAAGGCATGAATGACAATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCA
* * * * * *
7115210 AGGCCAAGATTTAATTATAACCTTTCTTAACTGAAAATGTAAAAAAATTCAACTTGAAATCAATA
66 AGGCAAACATTCAATTATAACATTTCTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
7115275 ATGAGAGTATAAGGGTTCT
131 ATGAGAGTATAAGGGTTCT
* *
7115294 GAAGGCATTAATGACTATAAATGGACTTTTCTTGT-ATATCGATGGCTTTCGCTTCACGTTTCTC
1 GAAGGCATGAATGACAATAAATGGACTTTTCTTGTCA-ATCGATGGCTTTCGCTTCACGTTTCTC
* * *
7115358 GAGGTAAACATTCAATTATAATATGTT-TTAA-TCAAAAATGTAAAAAAATTCAACTTAAAAT-A
65 AAGGCAAACATTCAATTATAACAT-TTCTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCA
* *
7115420 CATTATGAGATTATAA
128 -ATAATGAGAGTATAA
7115436 AACCATTTAA
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
148 3 0.03
149 115 0.96
150 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (149 bp):
GAAGGCATGAATGACAATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCA
AGGCAAACATTCAATTATAACATTTCTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
ATGAGAGTATAAGGGTTCT
Found at i:7115674 original size:172 final size:171
Alignment explanation
Indices: 7115294--7115679 Score: 510
Period size: 172 Copynumber: 2.3 Consensus size: 171
7115284 TAAGGGTTCT
* * * *
7115294 GAAGGCATTAATGACTATAAATGGACTTTTCTTGT-ATATCGATGGCTTTCGCTTCACGTTTCTC
1 GAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCA-ATGGATAGCTTTCGCTTCACGTTTCTC
* ** *
7115358 GAGGTAAACATTCAATTATAATATGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATACAT
65 GAGGTAAACAATCAATTATAATATGTTTTAAGAAAAAATGTAAAAAAATTCAACTTAAAATAAAT
*
7115423 TATGAGATTATAAAACCATTTAAAGCAAGCAATAAGAACTTC
130 TATGAGATTATAAAACCATTTAAAGCAAGCAACAAGAACTTC
* * ** * *
7115465 AAAGCCATTAGTGACTATAACA-AAACTTTTTTTCTCAATGGTTAGCTTTCG-TATCACGTTTCT
1 GAAGGCATTAGTGACTATAA-ATGGACTTTTCTTCTCAATGGATAGCTTTCGCT-TCACGTTTCT
*
7115528 TGAGGTAAACAATCAATTATAATATGTTTTAAGAAAAAATGTAAAAAAAATTCAACTTAAAATAA
64 CGAGGTAAACAATCAATTATAATATGTTTTAAGAAAAAATGT-AAAAAAATTCAACTTAAAATAA
* * * *
7115593 ATTATGAGATTATAAAACCATTTAAAGCGAGTAACAAG-GCTTTG
128 ATTATGAGATTATAAAACCATTTAAAGCAAGCAACAAGAAC-TTC
*
7115637 GAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGGAT
1 GAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGAT
7115680 GGTTTCATTT
Statistics
Matches: 182, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
170 1 0.01
171 87 0.48
172 94 0.52
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (171 bp):
GAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTCTCG
AGGTAAACAATCAATTATAATATGTTTTAAGAAAAAATGTAAAAAAATTCAACTTAAAATAAATT
ATGAGATTATAAAACCATTTAAAGCAAGCAACAAGAACTTC
Found at i:7115751 original size:491 final size:492
Alignment explanation
Indices: 7114272--7115760 Score: 1313
Period size: 515 Copynumber: 3.0 Consensus size: 492
7114262 CATTTAAAGC
* * * *
7114272 GAGTAATAAGGCTT-TCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
1 GAGTAATAAGGCTTCT-GAAGGCATGA-ATGACTATAAATGCACTTTTCTTGTCAATCGATGGCT
** * * * ** ** * **
7114335 TTTGCTTCACG-TTTCTCGAGGTAAACATTTATTTATAACCT-TTCTTAACCGAAAACAT-AAAA
64 TTCACTTAACGTTTTCTC-AGGCAAACATTCAACTATAATATGTT-TTAACCAAAAATGTAAAAA
* * * **
7114397 -AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAA
127 CAAATTCAACTTAAAATGAATAATGAGATTATAAAACCATTTAAAGCAAGCAATAAAACTTTCAA
* ** * * * *
7114461 AGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCGA
192 AGCCATGA-GTGACTATAAATAAACTTTTCTTCTCAATGGATAGCTTGTGCTTCACGTTTCTTGA
* * * * * * *
7114525 GGTAAACATTTATTTATAACCTTTCTTAACCGAAAACA--TAAAAAAATTCAACTTAA-AATCAA
256 GGCAAACAATCAATTATAACATTTCTTAA--GAAAAAATGTAAAAAAATTCAAC-TAACAATAAA
* * * ** * *
7114587 TAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAAT
318 TTATGAGATTATAAAACCATTTAAAGCGAGAAACAAAACTTTCGAAGGCATGAGTGACAATAAAT
* * * * * * * * ** * * * *
7114652 AGACCTTTCTTGTCAATAGATGGCTTTTACATCACGTTTCTCGAGGTAAACATTTAATTATAAGC
383 GGACTTTTCTTCTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGCCAAGATCTAACTAT-ACC
* * *
7114717 TTTCTTAACTAAAAATGTAAAAATATTCAACTTAAAACTAATTATGAGATTATAAAACTATTTTA
447 TTTCTTAAC-GAAAATGTAAAAAAATTCAACTT---A--AA--AT--CA--AT---A--A---T-
*
7114782 AGT
491 -GA
* * *
7114785 GAGTAATAAGGCTTCTGAAGGCATGAGTGATTATAAATGCACTTTTGTTGTCAATCGATGGCTTT
1 GAGTAATAAGGCTTCTGAAGGCATGAATGACTATAAATGCACTTTTCTTGTCAATCGATGGCTTT
*
7114850 CACTTAACGTTTTCTCAGGCAAACATTCAACTATAATCTGTTTTAACCAAAAATGTAAAAACAAA
66 CACTTAACGTTTTCTCAGGCAAACATTCAACTATAATATGTTTTAACCAAAAATGTAAAAACAAA
* * * * *
7114915 TTCAACTTAAAATGAATAATGGGATTATAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGC
131 TTCAACTTAAAATGAATAATGAGATTATAAAACCATTTAAAGCAAGCAATAAAACTTTCAAAGCC
* ** * * *
7114980 ATGAGTTACTATAAATGGACTTTTCTTGTCAATGGATGGCTTGTGCTTCATGTTTCTTGAGGCAA
196 ATGAGTGACTATAAATAAACTTTTCTTCTCAATGGATAGCTTGTGCTTCACGTTTCTTGAGGCAA
* * * *** * *
7115045 ACATTTAATTATAACCTTTCTTAATCGAAAATGTTAAAAAATTCAACTAACAATCAATTATGAGA
261 ACAATCAATTATAACATTTCTTAAGAAAAAATGTAAAAAAATTCAACTAACAATAAATTATGAGA
*
7115110 TTATAAAACCATTTAAAGCGAGAAATAAAACTTTCGAAGGCATGAGTGACAATAAATGGACTTTT
326 TTATAAAACCATTTAAAGCGAGAAACAAAACTTTCGAAGGCATGAGTGACAATAAATGGACTTTT
* * * ** * *
7115175 GTTGTCAATTGATGGCTTTTGCTTCATGTTTCTCAAGGCCAAGATTTAATTATAACCTTTCTTAA
391 CTTCTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGCCAAGATCTAACTAT-ACCTTTCTTAA
*
7115240 CTGAAAATGTAAAAAAATTCAACTTGAAATCAATAATGA
455 C-GAAAATGTAAAAAAATTCAACTTAAAATCAATAATGA
* * *
7115279 GAGT-ATAAGGGTTCTGAAGGCATTAATGACTATAAATGGACTTTTCTTGT-ATATCGATGGCTT
1 GAGTAATAAGGCTTCTGAAGGCATGAATGACTATAAATGCACTTTTCTTGTCA-ATCGATGGCTT
* * * * *
7115342 TCGCTTCACG-TTTCTCGAGGTAAACATTCAATTATAATATGTTTTAATCAAAAATGT-AAAA-A
65 TCACTTAACGTTTTCTC-AGGCAAACATTCAACTATAATATGTTTTAACCAAAAATGTAAAAACA
*
7115404 AATTCAACTTAAAAT-ACATTATGAGATTATAAAACCATTTAAAGCAAGCAATAAGAAC-TTCAA
129 AATTCAACTTAAAATGA-ATAATGAGATTATAAAACCATTTAAAGCAAGCAATAA-AACTTTCAA
* * *
7115467 AGCCATTAGTGACTATAACA-AAACTTTTTTTCTCAATGGTTAGCTT-T-CGTATCACGTTTCTT
192 AGCCATGAGTGACTATAA-ATAAACTTTTCTTCTCAATGGATAGCTTGTGC-T-TCACGTTTCTT
* *
7115529 GAGGTAAACAATCAATTATAATATGTT-TTAAGAAAAAATGTAAAAAAAATTCAACTTAA-AATA
254 GAGGCAAACAATCAATTATAACAT-TTCTTAAGAAAAAATGT-AAAAAAATTCAAC-TAACAATA
* ** * *
7115592 AATTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTGGAAGGCATGAGTGACTATAA
316 AATTATGAGATTATAAAACCATTTAAAGCGAGAAACAAAACTTTCGAAGGCATGAGTGACAATAA
* *
7115657 ATGGACTTTTCTTCTCAATGGATGG-TTTCATTTCATGTTTCTCAAGGCGTAA-ATCTAACTAT-
381 ATGGACTTTTCTTCTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGC-CAAGATCTAACTATA
* *
7115719 CGTATGT-TTAAAC-AAAATACGTAAAGAAATTCAACTTAAAAT
445 CCT-T-TCTT-AACGAAAAT--GTAAAAAAATTCAACTTAAAAT
7115761 TGTCACGATC
Statistics
Matches: 840, Mismatches: 110, Indels: 74
0.82 0.11 0.07
Matches are distributed among these distances:
489 8 0.01
490 6 0.01
491 181 0.22
492 114 0.14
493 98 0.12
494 5 0.01
496 1 0.00
499 1 0.00
501 1 0.00
504 2 0.00
506 1 0.00
508 2 0.00
510 2 0.00
513 94 0.11
514 17 0.02
515 306 0.36
516 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (492 bp):
GAGTAATAAGGCTTCTGAAGGCATGAATGACTATAAATGCACTTTTCTTGTCAATCGATGGCTTT
CACTTAACGTTTTCTCAGGCAAACATTCAACTATAATATGTTTTAACCAAAAATGTAAAAACAAA
TTCAACTTAAAATGAATAATGAGATTATAAAACCATTTAAAGCAAGCAATAAAACTTTCAAAGCC
ATGAGTGACTATAAATAAACTTTTCTTCTCAATGGATAGCTTGTGCTTCACGTTTCTTGAGGCAA
ACAATCAATTATAACATTTCTTAAGAAAAAATGTAAAAAAATTCAACTAACAATAAATTATGAGA
TTATAAAACCATTTAAAGCGAGAAACAAAACTTTCGAAGGCATGAGTGACAATAAATGGACTTTT
CTTCTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGCCAAGATCTAACTATACCTTTCTTAAC
GAAAATGTAAAAAAATTCAACTTAAAATCAATAATGA
Found at i:7116802 original size:51 final size:51
Alignment explanation
Indices: 7116723--7116823 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
7116713 TTTATCGTTG
* *
7116723 CAGCGAGATTCCTTTTCATTGCAGCGAGAAGCTACAATGACTATCTCGCTA
1 CAGCGAGATTCCTTTTCACTGCAACGAGAAGCTACAATGACTATCTCGCTA
* * *
7116774 CAGCGAGATTCCTTTTCGCTGCAACGAGAAGTTACAGTGACTATCTCGCT
1 CAGCGAGATTCCTTTTCACTGCAACGAGAAGCTACAATGACTATCTCGCT
7116824 GCAATGAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (51 bp):
CAGCGAGATTCCTTTTCACTGCAACGAGAAGCTACAATGACTATCTCGCTA
Found at i:7116844 original size:51 final size:51
Alignment explanation
Indices: 7116742--7116847 Score: 131
Period size: 51 Copynumber: 2.1 Consensus size: 51
7116732 TCCTTTTCAT
* * * * *
7116742 TGCAGCGAGAAGCTACAATGACTATCTCGCTACAGCGAGATTCCTTTTCGC
1 TGCAACGAGAAGCTACAATGACTATCTCGCTACAACGAAATTCATTCTCGC
* * * *
7116793 TGCAACGAGAAGTTACAGTGACTATCTCGCTGCAATGAAATTCATTCTCGC
1 TGCAACGAGAAGCTACAATGACTATCTCGCTACAACGAAATTCATTCTCGC
7116844 TGCA
1 TGCA
7116848 GCAAGAACCA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (51 bp):
TGCAACGAGAAGCTACAATGACTATCTCGCTACAACGAAATTCATTCTCGC
Found at i:7117108 original size:8 final size:8
Alignment explanation
Indices: 7117097--7117121 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7117087 ACATATTAAC
7117097 ATATGTAT
1 ATATGTAT
7117105 ATATGTAT
1 ATATGTAT
7117113 ATATGTAT
1 ATATGTAT
7117121 A
1 A
7117122 CATATACCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (8 bp):
ATATGTAT
Found at i:7118784 original size:171 final size:171
Alignment explanation
Indices: 7118477--7123894 Score: 5346
Period size: 171 Copynumber: 31.7 Consensus size: 171
7118467 AAAATAAGTT
* *
7118477 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCGTGAGTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * * *
7118542 ACTTTTCTTGTCAATCAATGGCTTTTGCTTCACGTTTC-CAGAGGCAAACATTCAATTATAATCT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTC-GAGGGAAACATTCAATTATAATCT
* * *
7118606 ATTTTAACTAAAAATGCAAAAAAATTCAACTTAAAATAAATA
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7118648 ATGAGATTATAAAAACATTTAAAGTGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* *** * * * * *
7118713 ACTTTTGTTGTCAATGGATGGCTTTCGCTTTGTATTTTTCGAGGTGTAA-A-TCTAACTATCATA
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGG-GAAACATTC-AATTATAATC
* * *
7118776 TGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATT
129 TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * *
7118819 ATGAGATTATAAAGCCATTTAAAGCAAGTAATGAGGCTTTCAAAGGCGTGAGTGACTACAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * *
7118884 ACTTTTCTTATCAATCGATGGCTTTCGCTTCACGTTTTTCGAGGTAAACATTCACTTATAATTTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* *
7118949 TTTTAATTAAAAATGCAAAAAAATTCAACTTAAAATCAATA
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * * *
7118990 ATGAAATTATGAAACCATTTAAAGTGAGTAATAACGCTTT-GAAGGAATGAGGGACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * *
7119054 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCAC-GTTCCCTAAGGCAAACATTTAATTACAATCT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTC-GAGGGAAACATTCAATTATAATCT
** ** * * * *
7119118 -TTCTTGGCCGAAAATGTAAAAAAGTTAAACTTGAAATCAATT
130 GTT-TTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7119160 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCCAAAGGCATAAGTGACTATCAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * ** * *
7119225 ACTTTTCTTGTTAATCGATGG-TATTTGCTTCATGTTTC-CTGAGGCAAACATTCAATTGTAATC
66 ACTTTTCTTGTCAATGGATGGCT-TTCGCTTCACATTTCTC-GAGGGAAACATTCAATTATAATC
* * *
7119288 TATTTTCA-TCAAAAAGGTAAAAAAATTCAACTTAAAATCAATA
129 TGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAATA
* *
7119331 ATGACATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAATGCATGAGTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * * *
7119396 ACTTTTCTTACCAATCGATGGCTTTCGCTTCA-AGTTTCCCGAGGCAAACATTCAATTATAATCT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACA-TTTCTCGAGGGAAACATTCAATTATAATCT
* * *
7119460 GTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * *
7119502 ATGGGGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTAACTATAAATG
1 AT-GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * * *
7119567 AAGTTTTCTTGTCAATCGATGGCTTTCACTTCACGTTTCTCAAGGTAAACATTCAATTATAACCT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCT
* * * * *
7119632 TTTTTAACTGAAAATCTAAAAAACTTCAACTTAAAATCAATT
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* *
7119674 ATGAGATTAT-AAACCATTTTAAGCGACTAATAAGGC-TTCTGAAGGCATGAGTGACTATAAATG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAAATG
* * * * * * * *
7119737 GACTTTTTCTAT-T-AATAGAGGGTTTTAGCCTCATATTTCTCGAGGTG-AACAGTCAATTACAA
65 GAC-TTTTCT-TGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGG-GAAACATTCAATTATAA
* *
7119799 TCTATTTTAACAAAAAATGT-AAAAAATTCAACTTAAAATCAATA
127 TCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7119843 ATGAGATTATAAAA-CATTTAAAGCGAGCAATAAGGTTTTCGAAGGCATGACTGACTGTAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * *
7119907 ATTTTTCTTGTCAATGGATGGGTTTCGCTTCACATTTCTCAAAGCAAACCTTCAATTATAATTTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * * *
7119972 TTTTAACTAAAAATGTAAGAAAATTCAGCATAAAATTAATA
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * * *
7120013 ATCAGATTATAAAACCATTTTACGTGAGCAATAAGGCTTTCGATGGCATGAGTGACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * ** * * *
7120078 ACTTTTCTCATCAATCGATGGCTTTCGCAGCACATTTCCCAAGGCAAACATTCAATTATAATCTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * * *
7120143 TTTTAACCAAAAATGTAAGAAAATTCAACTTAAAACCAATT
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* *
7120184 ATGAGATTATAAAACCATTTAAACCGAGTAATAAGGCTTTCGAAAGG-ATGAGTGACTGTAAATG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGAGTGACTATAAATG
* * **
7120248 AACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGCCAAACATTCAATTATAATCT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCT
* * * * *
7120313 ATTTTAACCAAAAATGTAAGAAAATTCAACATAAAATGAATA
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7120355 ATCAGATTATAAAACCATTTTAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* ** * * * * * * * *
7120420 CCTTTTCTTGTCAATTAACGACTTTTGCTTCACGTTTCTCGAGGTAAACGTTCAATGATAATCTA
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * * *
7120485 TCTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATT
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
** * * *
7120526 ATGAGATTATAAAATGATTTAAAGAGAGTAATAAGGCTTTCGAAGGCATGAATGGCTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * ** * * * *
7120591 ACTTTTCTTGTCAACGAAGGGTTTTATCCTCACGTTTCTCAAGGTAAACATTCAATTATAATCTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * *
7120656 TTTTAACAAAAAATATAAAACAAATTCAACCTAAAATCAATA
131 TTTTAACTAAAAATGTAAAA-AAATTCAACTTAAAATCAATA
* * * * * *
7120698 ATGAGATTATAAAACCAATTCAAGCGAGTAATAAGGCTTTCAAAGACATGAGTGACTGTAAATAG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * *
7120763 ACTTTTCTTGTCAATCGATGGCATTCACTTCACGTTTCACGAGGTAAACATTCAATTACAATCTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * * *
7120828 TTGTAACCAAAAATGTAAAAAAATTCAGCTTAAAATCCATA
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
** * * * * *
7120869 ATCTGATTATAAAACCATTTAAAGCAAGTAAGAAGGCTTTCGAAGGCATGAATGGCTAGAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * ** * * * *
7120934 ACTTTTCTTATCCATCGATGGCTTTCGCTTCATGTTTCCCTAGGCAAATATTCAATTATAATCTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * *
7120999 TTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATT
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* *
7121040 ATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-TATTCGAAGGCATGAATGACTATAAATG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT-TTCGAAGGCATGAGTGACTATAAATG
* * * **
7121104 GACTTTTCTAGTTC-ATGGATGGATTTCGCTTCACGTTTCAT-GAGGTCAACATTCAATTATAA-
65 GACTTTTCTTG-TCAATGGATGGCTTTCGCTTCACATTTC-TCGAGGGAAACATTCAATTATAAT
** * * * * *
7121166 CCCTTCTAAATAAAAAATGTAAAATAATTCAGCTTAAAATCAATT
128 CTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * ** * *
7121211 GTGAGATTATAAAACCATTTTAAGCGAGTAATAAGG-TTTCTGAAGAAATGAGTGACTGTACATG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAAATG
* * * * * * * * * * *
7121275 TACTTTTCTTGTCAATGGAGGGTTTTAGCCTCACGTTTCTCAAGGTAAATATTCAATTACAATAT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCT
* * *
7121340 GTTTTAACAAAAAATGTAAAAAAATTCAATTTAAAATGAATA
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7121382 ATCAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGATTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * ** *
7121447 AATTTCCTTGTCAATCGATGACTTTCGCTTCA-AGTTTCTCGAGACAAACATTCAATTATAATCC
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACA-TTTCTCGAGGGAAACATTCAATTATAATCT
* * *
7121511 GTTTTAA-TCAAAAATGTAAGAAAATTCAACATAAAATCCATA
130 GTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * *
7121553 ATGGGATTTTAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTTACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * ** * * * *
7121618 ACTTTTCTTGTCAATTGATGGGTTTCGCTTCATGTTTCTCAAGGTAAACGTTCAATTATAACCT-
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * *
7121682 TTCTTAA-TAGAAAATGCAAAAAAATTCTACTTAAAATCAATT
131 TT-TTAACTA-AAAATGTAAAAAAATTCAACTTAAAATCAATA
* * *
7121724 ATGAGATTATAAAACCATTTTAAGCGACTAATAAGGC-TTCTAAAGGCATGAGTGACTATAAATG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAAATG
* * * * * * * * * ** * * *
7121788 GACTTTTCCTATTAACGAAGGGTTTTAGCCTCATGTTTC-CTGAGGTG-AACATTTACTTAGAAT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTC-GAGG-GAAACATTCAATTATAAT
* *
7121851 CAGTTTTAA-TAAAAAATGTAAAAAAAATCAACTTAAAATCAATA
128 CTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * *
7121895 ATGAGATTATAAAACCATTTAAATCGAGTAATAAGGCTTTCGAAGGCATGACTGATTGTATATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * *
7121960 ATTTTTCTTGTCAATCGATGGCTTTCGCTTCA-AGTTTCTCAAGGCAAACATTCAATTATAATAT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACA-TTTCTCGAGGGAAACATTCAATTATAATCT
* * *
7122024 GTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * *
7122066 ATGGGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTTACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * ** * * * *
7122131 ACTTTTCTTGTCAATTGATGGGTTTCGCTTCATGTTTCTCAAGGTAAACGTTCAATTATAACCT-
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * *
7122195 TTCTTAA-TAGAAAATGCAAAAAAATTCTACTTAAAATCAATT
131 TT-TTAACTA-AAAATGTAAAAAAATTCAACTTAAAATCAATA
* * *
7122237 ATGAGATTATAAAACCATTTTAAGCGACTAATAAGGC-TTCTAAAGGCATGAGTGACTATAAATG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAAATG
* * * * * * * * ** * * * *
7122301 GACTTTTCCTATTAACGGAGGGTTTTAGCCTCATGTTTC-CTGAGGTG-AACATTTACTAAGAAT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTC-GAGG-GAAACATTCAATTATAAT
*
7122364 CAGTTTTAA-TAAAAAATGTAAAAAAATTCAACTTAAAATCAATA
128 CTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7122408 ATGAGATTATAAAACCATTTAAATCGAGTAATAAGGCTTTCGAAGGCATGACTGATTGTAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * *
7122473 ATTTTTCTTGTCAATCGATGGCTTTCGCTTCA-AGTTTCTCAAGGCAAACATTCAATTATAATAT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACA-TTTCTCGAGGGAAACATTCAATTATAATCT
* * *
7122537 GTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
7122579 ATGGGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGAC-ATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* *** * * * * *
7122643 ACTTTTCTTGTCAATCGATGGCTTTTATTTCACGTTTATCAAGGCAAACATGCAATTATAATCTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * * * * * *
7122708 TATCAACCAAAAATATGAAAAAATTCAACTTAAAATTAATT
131 TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * *
7122749 ATGAGATTATAAAACCATTTAAAGCAAGTACTAAGACTTTTGAAGGCATGTGTGACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * * *
7122814 ACTTTTCTTTTCAATGGATGGTATTTCGCTTCACGTTTCCCAAGGTAAAAATTCAATTATAATAT
66 ACTTTTCTTGTCAATGGATGG-CTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCT
* * * * * *
7122879 GATTTAACCAAAAAGGTAAAAAAATTTAACTTAAAATTAATT
130 GTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * *
7122921 ATGAGATTATAAAA-CA-TTGAAGTGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* ** * ** * * * *
7122984 ACTTTTGTTCCCAATGGATGGCTTTTGCTTCATGTTTCTCGAGGAAAATATTCAATTATATTCTA
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* * *
7123049 TTTTAACCAAAAA-GTTAAAAAACTTCAACTTAAAATCAATT
131 TTTTAACTAAAAATG-TAAAAAAATTCAACTTAAAATCAATA
* * * ** * *
7123090 ATGAGATTATAAAACTATTTGAAGCGAGTCATAAGGCTTTTAAAGGAATGAGTGACTACAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* ** * * * * * *
7123155 ACTTTTCTTGCCAATTAATGGCTTTTGCTTCACGTTTCCCTAGGCAAACATTCAATTATAATCTA
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
* *
7123220 TTTTAACCAAAAAAAGTAAAAAAAATTCAACTTAAAATCAATA
131 TTTTAA-CTAAAAATGT-AAAAAAATTCAACTTAAAATCAATA
* * ** * *
7123263 TTGAGATAATAAAATTAGTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * *
7123328 ACTTCTT-TTGCCAAAGGATGGCTTTCGCTTCACATTTCTCAAGGCAAACA-TCTAATTATCATA
66 ACTT-TTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTC-AATTATAATC
* * * * * *
7123391 TGTTTTAAC-CAGAATGCAAAAAAATTGAACCTAAAATCAATT
129 TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * *
7123433 ATGAGATTATAAAATCATTTAAAGCAACTAATAAGGC-TTCTAAAGGCATGAGTGAGTATAAATA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAAATG
* * ** * * *
7123497 GACTTTTCTTGTCAATGGATGGTTTTCACTTCATGTTTC-CTGAGGTAAACATTCAGTTATCATC
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTC-GAGGGAAACATTCAATTATAATC
* * * *
7123561 -GATTTTAACCAGAAATGTAAAAAAATTCAACTTAAAACCAATT
129 TG-TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * *
7123604 ATGAGATTATAAATCCATTTAAAGCGAGCAATAAGGCTTTTGAAGGCATGAGTTACTATAAATAA
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT-G
* * * ** ** * **
7123669 AATTTTTCTTATCAATGGATGGCTTTTACTTCATGTTTCTCGAGGGAAACATTTAATCCTAATCT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCT
* * * *
7123734 -TTCTTAACCAAAAATGTAAAAAAGTTGAACTTAAAATCAATT
130 GTT-TTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * * ** * **
7123776 ATCAGATTATAAAACTACTTAAAGTGAGTAATAAGCCTTTTAAAGGTATGAAAGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * *
7123841 ACTTTTC---CCAATGGATGGCTTTCGCTTCACGTTTGCT-GAGGTAAACAATCAATT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTT-CTCGAGGGAAACATTCAATT
7123895 GTTGTCACGA
Statistics
Matches: 4332, Mismatches: 823, Indels: 187
0.81 0.15 0.04
Matches are distributed among these distances:
167 1 0.00
168 44 0.01
169 225 0.05
170 629 0.15
171 2736 0.63
172 561 0.13
173 134 0.03
174 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (171 bp):
ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTCGAGGGAAACATTCAATTATAATCTG
TTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATA
Found at i:7120566 original size:513 final size:512
Alignment explanation
Indices: 7118477--7123894 Score: 5881
Period size: 513 Copynumber: 10.6 Consensus size: 512
7118467 AAAATAAGTT
* * * *
7118477 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCGTGAGTGACTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
* *
7118542 ACTTTTCTTGTCAATCAATGGCTTTTGCTTCACGTTTC-CAGAGGCAAACATTCAATTATAATCT
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCA-AGGCAAACATTCAATTATAATCT
* * * * *
7118606 ATTTTAACTAAAAATGCAAAAAAATTCAACTTAAAATAAATAATGAGATTATAAAAACATTTAAA
130 -TTTTAACCAAAAATG-TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * *
7118671 GTGAGTAACAAGACTTTCG-AAGGCATGAGTGACTATAAATGGACTTTTGTTGTCAATGGATGGC
193 GCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
**** * * * * * *
7118735 TTTCGCTTTGTATTTTTCGAGGTGTAA-A-TCTAACTATCATATGTTTTAACAAAAAATGTAAAA
258 TTTCGCTTCACGTTTCTCGAGGT-AAACATTC-AATTATAATCTATTTTAACAAAAAATGTAAAA
* * * * * *
7118798 AAATTCAACTTAAAATAAATTATGAGATTATAAAGCCATTTAAAGCAAGTAATGAGGCTTTCAAA
321 AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * *
7118863 GGCGTGAGTGACTACAAATGGACTTTTCTTATCAATCGATGGCTTTCGCTTCACGTTTTTCGAGG
386 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGG
* * * ** * * *
7118928 TAAACATTCACTTATAATTTGTTTTAATTAAAAATGCAAAAAAATTCAACTTAAAATCAATA
451 CAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
* * * * *
7118990 ATGAAATTATGAAACCATTTAAAGTGAGTAATAACGCTTT-GAAGGAATGAGGGACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
* * * *
7119054 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTCCCTAAGGCAAACATTTAATTACAATCT
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTC-AAGGCAAACATTCAATTATAATCT
** * * *
7119118 TTCTTGGCCGAAAATGTAAAAAAGTTAAACTTGAAATCAATTATGAGATTATAAAACCATTTAAA
130 TT-TTAACCAAAAATGTAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * *
7119183 GCGAGTAATAAGGC-TTCCAAAGGCATAAGTGACTATCAATGGACTTTTCTTGTTAATCGATGG-
193 GCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * * *
7119246 TATTTGCTTCATGTTTC-CTGAGGCAAACATTCAATTGTAATCTATTTTCATC-AAAAAGGTAAA
258 T-TTCGCTTCACGTTTCTC-GAGGTAAACATTCAATTATAATCTATTTT-AACAAAAAATGTAAA
*
7119309 AAAATTCAACTTAAAATCAATAATGACATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
320 AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* ** *
7119374 ATGCATGAGTGACTATAAATGGACTTTTCTTACCAATCGATGGCTTTCGCTTCAAGTTTCCCGAG
385 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAG
7119439 GCAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
450 GCAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
* * * *
7119502 ATGGGGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTAACTATAAATG
1 AT-GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * *
7119567 AAGTTTTCTTGTCAATCGATGGCTTTCACTTCACGTTTCTCAAGGTAAACATTCAATTATAACCT
65 AACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATC-
** * *
7119632 TTTTTAACTGAAAATCTAAAAAACTTCAACTTAAAATCAATTATGAGATTAT-AAACCATTTTAA
129 TTTTTAACCAAAAATGTAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * *
7119696 GCGACTAATAAGGC-TTCTG-AAGGCATGAGTGACTATAAATGGACTTTTTCTAT-T-AATAGAG
193 GCGAGTAATAAGGCTTTC-GAAAGGCATGAGTGACTATAAATGGAC-TTTTCT-TGTCAATGGAT
* * * ** * * *
7119757 GGTTTTAGCCTCATATTTCTCGAGGTGAACAGTCAATTACAATCTATTTTAACAAAAAATGT-AA
255 GGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAA
* *
7119821 AAAATTCAACTTAAAATCAATAATGAGATTATAAAA-CATTTAAAGCGAGCAATAAGGTTTTCGA
320 AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* * * * * *
7119885 AGGCATGACTGACTGTAAATGGATTTTTCTTGTCAATGGATGGGTTTCGCTTCACA-TTTCTCAA
385 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCA-AGTTTCTCGA
* * * * * *
7119949 AGCAAACCTTCAATTATAATTTGTTTTAACTAAAAATGTAAGAAAATTCAGCATAAAATTAATA
449 GGCAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
* * * * *
7120013 ATCAGATTATAAAACCATTTTACGTGAGCAATAAGGCTTTCGATGGCATGAGTGACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
** ** * *
7120078 ACTTTTCTCATCAATCGATGGCTTTCGCAGCACATTTCCCAAGGCAAACATTCAATTATAATCTG
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCT-
* *
7120143 TTTTAACCAAAAATGTAAGAAAATTCAACTTAAAACCAATTATGAGATTATAAAACCATTTAAAC
130 TTTTAACCAAAAATGTAA-AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* *
7120208 CGAGTAATAAGGCTTTCGAAAGG-ATGAGTGACTGTAAATGAACTTTTCTTGTCAATGGATGGCT
194 CGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
** * *
7120272 TTCGCTTCACGTTTCTCGAGCCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAGAAAA
259 TTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAA
* * * * *
7120337 TTCAACATAAAATGAATAATCAGATTATAAAACCATTTTAAGCGAGTAATAAGGCTTTCAAAGGC
324 TTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC
* * ** * * * * *
7120402 ATAAGTGACTATAAATGGCCTTTTCTTGTCAATTAACGACTTTTGCTTCACGTTTCTCGAGGTAA
389 ATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGGCAA
* * * * * * *
7120467 ACGTTCAATGATAATCTATCTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATT
454 ACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
** * * * *
7120526 ATGAGATTATAAAATGATTTAAAGAGAGTAATAAGGCTTTCGAAGGCATGAATGGCTATAAATGG
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
* * ** * *
7120591 ACTTTTCTTGTCAA-CGAAGGGTTTTATCCTCACGTTTCTCAAGGTAAACATTCAATTATAATCT
66 ACTTTTCTTGTCAATCG-ATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCT
* * * * * *
7120655 GTTTTAACAAAAAATATAAAACAAATTCAACCTAAAATCAATAATGAGATTATAAAACCAATTCA
130 -TTTTAACCAAAAATGT-AAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * *
7120720 AGCGAGTAATAAGGCTTTC-AAAGACATGAGTGACTGTAAATAGACTTTTCTTGTCAATCGATGG
192 AGCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * * * * * *
7120784 CATTCACTTCACGTTTCACGAGGTAAACATTCAATTACAATCTGTTGTAACCAAAAATGTAAAAA
257 CTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAA
* * ** * *
7120849 AATTCAGCTTAAAATCCATAATCTGATTATAAAACCATTTAAAGCAAGTAAGAAGGCTTTCGAAG
322 AATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * * * *
7120914 GCATGAATGGCTAGAAATGGACTTTTCTTATCCATCGATGGCTTTCGCTTCATGTTTCCCTAGGC
387 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGGC
* * *
7120979 AAATATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATT
452 AAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
** *
7121040 ATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-TATTCGAAGGCATGAATGACTATAAATG
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT-TTCGAAGGCATGAGTGACTATAAATG
* * * * *
7121104 GACTTTTCTAGTTC-ATGGATGGATTTCGCTTCACGTTTCAT-GAGGTC-AACATTCAATTATAA
65 AACTTTTCTTG-TCAATCGATGGCTTTCGCTTCACGTTTC-TCAAGG-CAAACATTCAATTATAA
* * * ** * *
7121166 CCCTTCTAAATAAAAAATGTAAAATAATTCAGCTTAAAATCAATTGTGAGATTATAAAACCATTT
127 -TCTTTTTAACCAAAAATGTAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* ** * * *
7121231 TAAGCGAGTAATAAGG-TTTCTG-AAGAAATGAGTGACTGTACATGTACTTTTCTTGTCAATGGA
190 AAAGCGAGTAATAAGGCTTTC-GAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * * * * * * *
7121294 GGGTTTTAGCCTCACGTTTCTCAAGGTAAATATTCAATTACAATATGTTTTAACAAAAAATGTAA
254 TGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAA
* * * * *
7121359 AAAAATTCAATTTAAAATGAATAATCAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCA
319 AAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCG
* * * *
7121424 AAGGCATGATTGACTATAAATGGAATTTCCTTGTCAATCGATGACTTTCGCTTCAAGTTTCTCGA
384 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGA
* * *
7121489 GACAAACATTCAATTATAATCCGTTTTAATC-AAAAATGTAAGAAAATTCAACATAAAATCCATA
449 GGCAAACATTCAATTATAATCTGTTTTAA-CAAAAAATGTAAGAAAATTCAACATAAAATCAATA
* * * *
7121553 ATGGGATTTTAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTTACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
* * * * * *
7121618 ACTTTTCTTGTCAATTGATGGGTTTCGCTTCATGTTTCTCAAGGTAAACGTTCAATTATAACCTT
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTT
* * * *
7121683 TCTTAA-TAGAAAATGCAAAAAAATTCTACTTAAAATCAATTATGAGATTATAAAACCATTTTAA
131 T-TTAACCA-AAAATG-TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * * * * * *
7121747 GCGACTAATAAGGC-TTCTAAAGGCATGAGTGACTATAAATGGACTTTTCCTATTAACGAAGGGT
193 GCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * * * * *
7121811 TTTAGCCTCATGTTTC-CTGAGGTGAACATTTACTTAGAATC-AGTTTTAATAAAAAATGTAAAA
258 TTTCGCTTCACGTTTCTC-GAGGTAAACATTCAATTATAATCTA-TTTTAACAAAAAATGTAAAA
* *
7121874 AAAATCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAATCGAGTAATAAGGCTTTCGAA
321 AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * * *
7121939 GGCATGACTGATTGTATATGGATTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCAAGG
386 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGG
*
7122004 CAAACATTCAATTATAATATGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
451 CAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
* * *
7122066 ATGGGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTTACTATAAATGA
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
* * * * * *
7122131 ACTTTTCTTGTCAATTGATGGGTTTCGCTTCATGTTTCTCAAGGTAAACGTTCAATTATAACCTT
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTT
* * * *
7122196 TCTTAA-TAGAAAATGCAAAAAAATTCTACTTAAAATCAATTATGAGATTATAAAACCATTTTAA
131 T-TTAACCA-AAAATG-TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * * * * *
7122260 GCGACTAATAAGGC-TTCTAAAGGCATGAGTGACTATAAATGGACTTTTCCTATTAACGGAGGGT
193 GCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * * * * * *
7122324 TTTAGCCTCATGTTTC-CTGAGGTGAACATTTACTAAGAATC-AGTTTTAATAAAAAATGTAAAA
258 TTTCGCTTCACGTTTCTC-GAGGTAAACATTCAATTATAATCTA-TTTTAACAAAAAATGTAAAA
*
7122387 AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAATCGAGTAATAAGGCTTTCGAA
321 AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * *
7122452 GGCATGACTGATTGTAAATGGATTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCAAGG
386 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGG
*
7122517 CAAACATTCAATTATAATATGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
451 CAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
* * * *
7122579 ATGGGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGAC-ATAAATGG
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
*** * *
7122643 ACTTTTCTTGTCAATCGATGGCTTTTATTTCACGTTTATCAAGGCAAACATGCAATTATAATCTG
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCT-
* * * *
7122708 TATCAACCAAAAATATGAAAAAATTCAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAG
130 TTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* * * * * * * *
7122773 CAAGTACTAAGACTTTTG-AAGGCATGTGTGACTATAAATGAACTTTTCTTTTCAATGGATGGTA
194 CGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-C
* * * * * *
7122837 TTTCGCTTCACGTTTCCCAAGGTAAAAATTCAATTATAATATGA-TTTAACCAAAAAGGTAAAAA
258 TTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATCT-ATTTTAACAAAAAATGTAAAAA
* * * * *
7122901 AATTTAACTTAAAATTAATTATGAGATTATAAAA-CA-TTGAAGTGAGTAATAAGGCTTTCGAAG
322 AATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * ** * * * *
7122964 GCATAAGTGACTATAAATGGACTTTTGTTCCCAATGGATGGCTTTTGCTTCATGTTTCTCGAGGA
387 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGGC
* * * * * *
7123029 AAATATTCAATTATATTCTATTTTAACCAAAAA-GTTAA-AAAACTTCAACTTAAAATCAATT
452 AAACATTCAATTATAATCTGTTTTAACAAAAAATG-TAAGAAAA-TTCAACATAAAATCAATA
* * * * ** * * *
7123090 ATGAGATTATAAAACTATTTGAAGCGAGTCATAAGGCTTTTAAAGGAATGAGTGACTACAAATGG
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
* ** * * *
7123155 ACTTTTCTTGCCAATTAATGGCTTTTGCTTCACGTTTCCCTAGGCAAACATTCAATTATAATCTA
66 ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCT-
* * ** *
7123220 TTTTAACCAAAAAAAGTAAAAAAAATTCAACTTAAAATCAA-TATTGAGATAATAAAATTAGTTA
130 TTTTAACC-AAAAATGT--AAAAAATTCAACTTAAAATCAATTA-TGAGATTATAAAACCATTTA
* * *
7123284 AAGCGAGTAATAAGGCTTTCG-AAGGCATGAGTGACTATAAATAGACTTCTT-TTGCCAAAGGAT
191 AAGCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTT-TTCTTGTCAATGGAT
* * * * * * * * *
7123347 GGCTTTCGCTTCACATTTCTCAAGGCAAACA-TCTAATTATCATATGTTTTAAC-CAGAATGCAA
255 GGCTTTCGCTTCACGTTTCTCGAGGTAAACATTC-AATTATAATCTATTTTAACAAAAAATGTAA
* * * * * *
7123410 AAAAATTGAACCTAAAATCAATTATGAGATTATAAAATCATTTAAAGCAACTAATAAGGC-TTCT
319 AAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-
* * * * * * *
7123474 AAAGGCATGAGTGAGTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCACTTCATGTTTC-CT
383 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTC-
* * * * * * * *
7123538 GAGGTAAACATTCAGTTATCATC-GATTTTAACCAGAAATGTAAAAAAATTCAACTTAAAACCAA
447 GAGGCAAACATTCAATTATAATCTG-TTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAA
*
7123602 TT
511 TA
* * * * * *
7123604 ATGAGATTATAAATCCATTTAAAGCGAGCAATAAGGCTTTTGAAGGCATGAGTTACTATAAATAA
1 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT-G
* * * ** * * * * **
7123669 AATTTTTCTTATCAATGGATGGCTTTTACTTCATGTTTCTCGAGGGAAACATTTAATCCTAATCT
65 AACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCT
* * * *
7123734 TTCTTAACCAAAAATGTAAAAAAGTTGAACTTAAAATCAATTATCAGATTATAAAACTACTTAAA
130 TT-TTAACCAAAAATGTAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * ** *
7123799 GTGAGTAATAAGCCTTT-TAAAGGTATGAAAGACTATAAATGGACTTTTC---CCAATGGATGGC
193 GCGAGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
*
7123860 TTTCGCTTCACGTTTGCT-GAGGTAAACAATCAATT
258 TTTCGCTTCACGTTT-CTCGAGGTAAACATTCAATT
7123895 GTTGTCACGA
Statistics
Matches: 4210, Mismatches: 606, Indels: 181
0.84 0.12 0.04
Matches are distributed among these distances:
509 2 0.00
510 198 0.05
511 433 0.10
512 753 0.18
513 1921 0.46
514 824 0.20
515 79 0.02
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (512 bp):
ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA
ACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTT
TTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
AGTAATAAGGCTTTCGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
CGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATT
CAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCAT
GAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTTCAAGTTTCTCGAGGCAAAC
ATTCAATTATAATCTGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATA
Found at i:7127087 original size:171 final size:171
Alignment explanation
Indices: 7126722--7130337 Score: 3425
Period size: 171 Copynumber: 21.2 Consensus size: 171
7126712 TCGGATTTTA
* * ** * * * *
7126722 CAATTGTAATCTGTTTTAACCAACAATGTGGAAAAATTCAACTTAAAGTAAATTATG-TATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * *
7126786 AAATCAATTAAAGCGAGTAATAAGGCTTTCGTAGGCATGAGTGACTATAAATGGACTTTTCTTCT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
** **
7126851 CAATTAATGGCTTTCGCTTCACGTTTCTTGAA-GCAAACATT
131 CAATGGATGGCTTTCGCTTCACGTTTC-CCAAGGCAAACATT
* * * * *
7126892 CAATTATAAGCGGTCTTT-ACCAAAAATGTAAACAAATTCAACGTAAAATCTATAATGAGATTAT
1 CAATTATAATCTGT-TTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * * * * * * *
7126956 ATAACTATTTAAAGTGAGTAATACGCCTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCCTC
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * * * * * * * * * * *
7127021 CCAATAGATTGCTTTCACATCATGCTTCTCGAGGTAAGCAAT
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* *
7127063 CAACTATAATTTGTTTTAACCAAAAATG-AATAACAAATTCAACTTAAAATCAATAATGAGATTA
1 CAATTATAATCTGTTTTAACCAAAAATGTAA-AA-AAATTCAACTTAAAATCAATAATGAGATTA
* * * * * *
7127127 TAAAACCATTTAAATCAAGTCATAAAGATATT-GAAGGCATGAGTGACTATAAATGTACTTTTCT
64 TAAAACCATTTAAAGCGAGTAATAAGGCT-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* ** * * *
7127191 TATCAATGGATGAATTTTGCTTAATGTTTCCCAAGGCAAACATT
128 TCTCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * *** * * *
7127235 TATTTATAATCT-TTCTTAAATGAAACTGT-AAAAAATTCAACTTAAAATCAATTATCAGATTAT
1 CAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * * *
7127298 AAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACATTTCTTC
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * *
7127363 CCAATGGATGGCTTTCGCTTCACATTTCCCAAGGCAAATA-T
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * * * *
7127404 CAAATTATACTATATTTTAACCAAAAATATAAAAAAATTCAATTTAAAATCAATAATTAGATTAT
1 C-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * * *
7127469 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGCACTTTTCATA
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * *
7127534 TCAATAGATGGCTTTTGCTTCACGTTTCTCAAGGCAAACATT
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * * * * *
7127576 TAATTGTAATC----TTAACTAAAAAAGTAAAAAAAATTGAACTTAAAATCAATTATCAGATTAT
1 CAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * * * * *
7127637 AAAACCATTTAAAGTGAGCAACAAGGCTTCCGAGGGCATGAGTGACTATAAATGGACTTTTCTTG
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * * *** * **
7127702 TCAAT-CATTGGTTTTTC-TTTCACGTTTCTTGAGACAAATTTT
130 TCAATGGA-TGG-CTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * * *
7127744 TAATTATAATCTGTTTTAACCAAAAATATAAAAACATTTAACTTAAAATCAATAATGAGATTAAA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * *
7127809 AAACCACTTAAAGCGA-TCAATAAGCCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
66 AAACCATTTAAAGCGAGT-AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * * *
7127873 TCAATGGATAGCTTTTGCTTCATGTTTCCCAAGGTAAACATT
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * ** * *
7127915 TAATTATAATCTATTTT-A-TAAAAATGT--AAAAATTCAACTTAAAATCAATTGTCATATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * * **
7127976 AAACTATTTAAAGCAAGTAATAAGACTTTC-AATGGCATGAGTGACTATAAATAAACTTTTCTTC
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTC
* * * * *
7128040 TCAATGGATGGCATTTCACTTCACGTTTCCTAATGTAAAAATT
130 TCAATGGATGGC-TTTCGCTTCACGTTTCCCAAGGCAAACATT
* *** * * * * * *
7128083 CAATTATAATCTTTTTTAAATGAAAAGGTAAAACAATTAAATTTAAAATAAATAATTAGATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
** * * *
7128148 AAACCATTTAAAATGAGTAATAAGCCTTTCGAAGGAATGAGTGACTATAAATGAACTTTTCTTCT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
* * * ** * *
7128213 CAATGGATGGCTTTTGCATCAGGTTTCATAAGGTAACCATT
131 CAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * *
7128254 CAATTATAGTCTGTTTTAACCAAAAATGT-AAAAAATTCAACTCAAAATAAATTATGAGATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * * * *
7128318 AAACCATTTGAAGCGAGTAATAAGGTTTTCGAAGGCATAAGTTACTATAAATGGACTTTTCTTGT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
** * * * *
7128383 CAATCAATGGCTTTTGCTTCACATTTCCCGAGGTAAACATT
131 CAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* *
7128424 CAATTATAATCTGTTTTAGCCAATAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* *
7128489 AAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTCT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
* * * *
7128554 CAAAT-GATGGCTTTCACTTCACGTTTCCCATGGTAAATATT
131 C-AATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * ** *
7128595 CAATTATAATCTGTTTGAAACAAAAAACTAAAGAAATTCAACTTAAAATCAATAATGAGATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
** * * * * * *
7128660 AAATAATTTAAAGCAAGCAATAAGGCTTTTGAAGGCATGAGCGACTATAAAAAGG-CTTTTCTTG
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTAT-AAATGGACTTTTCTTC
*
7128724 TCAATGGATGGCTTTCGCTTCATGTTTCCCAAGGCAAACATT
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * * *
7128766 CAATTATAATCTTTTTTAACCCAAAATATAAAAAAATTCAACTTAAAATCAATAATAAGATTCTA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * * * * *
7128831 AAACCATTTAAAGGGAGTATTAAGGCTTTCGAAAGTATGAGTGACTATAAATGAACTTTTATTCT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
* * ** * * * * *
7128896 TAATGGAT-GCTATTTGCTTCATATTTCTCGA-GAAAAAAAT
131 CAATGGATGGCT-TTCGCTTCACGTTTCCCAAGGCAAACATT
* * * * * *
7128936 CTAACTATCATCTGTTTTAACCAAAAATGTAAAAATATTGAACTTAAAATCAATTATAAGATTAT
1 C-AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * ** * *
7129001 AAAACCATTTAAATCAAGTAATAAGGCTTGAGAAGGCATTAGTGACTATAAATGGACTTTTCTTG
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * * *
7129066 TCAATCGATGGCTTTTGCTTCACATTTCCCAAGGCAAACATG
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * *
7129108 CAATTATAATTTGTTTTAATCAAAAATGTAAAAAAATTAAACTCAAAATCAATAATGAGATTATA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * * * * * *
7129173 AAACCATTTAAGGTGAATAATAAGGCTTTCAAAGGCATGAGTCACTATAAATGCACTTTTCTTGT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
* * * * *
7129238 TAGTGGATGGCTTTCACTTCACGTTTCCCAAGACAAAGATT
131 CAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * *** * * ** * * *
7129279 TAATTATAATCT-TTCGTAATTGACAATGCAAAAAAATAAAACTTAAAATCAATTATCAAATTAT
1 CAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * ** * *
7129343 AAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATAAACTTTTCCTG
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTC
* * * * * **
7129408 TCAATTGTTGCCTTTCGCTTCATGTTTCCCAAGGAAAACGCT
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * *
7129450 CAATTATAATCTGTTTTAACCTAAAATGTAAAAAAATTGAACTTAAAATCAATAATGAGATTATC
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * * *
7129515 AAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAATGCACTTTTCTTG
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTAT-AAATGGACTTTTCTTC
* * * *
7129580 TTAATGGATGACTTTCGCTTCACGTTTCCCAAGGTAAACTTT
130 TCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * ** * * * * * * *
7129622 GAATTGTAATATGTTTTTGCCAAAAATGCAAAAAAAATCAGCTTAAAATCAATTATGTGACTACA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * *
7129687 AAACCATTTAAAGCGAGTAATAAGGCTGTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
66 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
* * * * *
7129752 CAATGGATGGCATTCGCTACACACGTTTTCTAAGGTAAACATT
131 CAATGGATGGCTTTCGCT--TCACGTTTCCCAAGGCAAACATT
* * * * * * * *
7129795 CAATTATAATCTCTTTTAACCAAAAATGAAAAAAAAAATCAACTTGAAATGAATTATAAGGTTAT
1 CAATTATAATCTGTTTTAACCAAAAATG-TAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* ** * * *
7129860 AATACCATTTAAAGTAAGTAATAAAGCTTT-TAGAGACATGAGTGACTATAAATGGACTTTTCTT
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGA-AGGCATGAGTGACTATAAATGGACTTTTCTT
* * * ** * * * *
7129924 GTTAATCGATAACTTTCTCTTCACATTTCCTAAGACAAACATT
129 CTCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* *
7129967 TAATTATAATCT-TTCTTAACC------------AAATTCAACTTAAAATCGAAT-ACGAGATTA
1 CAATTATAATCTGTT-TTAACCAAAAATGTAAAAAAATTCAACTTAAAATC-AATAATGAGATTA
* * * * * * * * *
7130018 TAAAACCATTTAGAGCAAGTAACAAGTCTTTCAAAGACATGATTGACTATAAATGAATTTTTCCT
64 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-CT
* * * * *
7130083 T-TCAATGGATGGCTTTTGCTTCACTTTTCCCGAGGTAAACATC
128 TCTCAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
* * * * * * *
7130126 CAATTATCACCTGTTTTAA-CAACAAATGCAAAAAAGTTGAACCTAAAATCAATTATGAGATTAT
1 CAATTATAATCTGTTTTAACCAA-AAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
* * * **
7130190 AAAAGCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTAAGAATAAATGGACTTTTCTTG
65 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-
* * *
7130255 AT-AATGGATGGCTTTCACTTCACATTTCCCTAA-GCAAACATT
129 CTCAATGGATGGCTTTCGCTTCACGTTTCCC-AAGGCAAACATT
* * * **
7130297 GAATTATCATCTATTTTAAGGAAAAATGTAAAAAAATTCAA
1 CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA
7130338 TTCTATTTTA
Statistics
Matches: 2796, Mismatches: 579, Indels: 141
0.80 0.16 0.04
Matches are distributed among these distances:
158 1 0.00
159 113 0.04
160 9 0.00
166 2 0.00
167 102 0.04
168 164 0.06
169 14 0.01
170 356 0.13
171 1467 0.52
172 427 0.15
173 46 0.02
174 95 0.03
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (171 bp):
CAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCT
CAATGGATGGCTTTCGCTTCACGTTTCCCAAGGCAAACATT
Found at i:7130869 original size:170 final size:171
Alignment explanation
Indices: 7130377--7130945 Score: 660
Period size: 170 Copynumber: 3.3 Consensus size: 171
7130367 TTCTCTAGGT
*
7130377 TAAACA-TCAATTATAATCTTTTTTAACCAAAAAGGTAAAAGAATTCAACTTAAAATCAATTATG
1 TAAACATTCAATTATAATCTTTTTTAACTAAAAAGGTAAAAGAATTCAACTTAAAATCAATTATG
* * * * ** *
7130441 AGAATATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGTAAAAGTGACTATAAATAGACT
66 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACT
* * **
7130506 TTTCTTCCCAATGGATGGCTTTTGCTTCATGTTTTCTAAGG
131 TTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTTCCGAGG
* * * * ** * *
7130547 CAAATATCCAATTATAATCTATTTTAACTAAAAATTTTAAAA-AGATTCAACTTAAAGTCAATAA
1 TAAACATTCAATTATAATCTTTTTTAACTAAAAA-GGTAAAAGA-ATTCAACTTAAAATCAATTA
* * * * * ** * *
7130611 TGAGATTCTAAAATCATTTAAAGCGAGTAATATGGCTTCCAAAGGCATGAACGACTATAAAAGGG
64 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGA
* * * *
7130676 CTTTTCCTGTCAATGGATGGCTTTTGCTTCACGTTTCCCGAGT
129 CTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTTCCGAGG
* * * * * *
7130719 TAAACATTTAATTACAATCTTTTTTAACTGAAAATGTAAAA-AATTCAAGTTAAAATCAATTATT
1 TAAACATTCAATTATAATCTTTTTTAACTAAAAAGGTAAAAGAATTCAACTTAAAATCAATTATG
7130783 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACT
66 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACT
* * * * * *
7130848 TTTTTTTTTAATCGTTGGCTTTTGCTTCACGTTTTTCGAGG
131 TTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTTCCGAGG
* *
7130889 TAAACATTCAATTATAATCTGTTTTAA-TAAAAAAGGTAAAATAATTCAACTTAAAAT
1 TAAACATTCAATTATAATCTTTTTTAACT-AAAAAGGTAAAAGAATTCAACTTAAAAT
7130946 TNNNNNNNNN
Statistics
Matches: 325, Mismatches: 69, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
169 1 0.00
170 144 0.44
171 46 0.14
172 134 0.41
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (171 bp):
TAAACATTCAATTATAATCTTTTTTAACTAAAAAGGTAAAAGAATTCAACTTAAAATCAATTATG
AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACT
TTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTTCCGAGG
Found at i:7133581 original size:18 final size:18
Alignment explanation
Indices: 7133558--7133610 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
7133548 AGTATACATT
*
7133558 CACTTTTGGTGGGTTATC
1 CACTTTTAGTGGGTTATC
* *
7133576 CACTTTTAATGGATTATC
1 CACTTTTAGTGGGTTATC
*
7133594 CATTTTTTAGTGGGTTA
1 CA-CTTTTAGTGGGTTA
7133611 AGATATCCAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.47
Consensus pattern (18 bp):
CACTTTTAGTGGGTTATC
Found at i:7133643 original size:26 final size:27
Alignment explanation
Indices: 7133591--7133668 Score: 81
Period size: 26 Copynumber: 2.9 Consensus size: 27
7133581 TTAATGGATT
*
7133591 ATCCATTTTTTAGTGGGTTAAGA-TATCC
1 ATCCATTTTTTAGT-GG-TAAAATTATCC
*
7133619 ATCCATTTTTTA-TGGTAAAATTATCT
1 ATCCATTTTTTAGTGGTAAAATTATCC
* *
7133645 ATCCA-CTTTTAGTGGTAAAGTTAT
1 ATCCATTTTTTAGTGGTAAAATTAT
7133669 TCTTAGATTC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
25 9 0.20
26 22 0.50
27 1 0.02
28 12 0.27
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (27 bp):
ATCCATTTTTTAGTGGTAAAATTATCC
Found at i:7133714 original size:26 final size:26
Alignment explanation
Indices: 7133631--7133719 Score: 72
Period size: 26 Copynumber: 3.5 Consensus size: 26
7133621 CCATTTTTTA
* * *
7133631 TGGTAAAATTATCTATCCACTTTTAG
1 TGGTAAAATTATCCATCCACTTCTGG
* * * ** *
7133657 TGGTAAAGTTATTCTTAGA-TTCTGA
1 TGGTAAAATTATCCATCCACTTCTGG
**
7133682 TAATAAAATTATCCATCCACTTCTGG
1 TGGTAAAATTATCCATCCACTTCTGG
7133708 TGGTAAAATTAT
1 TGGTAAAATTAT
7133720 AATTAAAATA
Statistics
Matches: 43, Mismatches: 19, Indels: 2
0.67 0.30 0.03
Matches are distributed among these distances:
25 15 0.35
26 28 0.65
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (26 bp):
TGGTAAAATTATCCATCCACTTCTGG
Found at i:7133845 original size:59 final size:59
Alignment explanation
Indices: 7133756--7133868 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 59
7133746 TTATAACCAT
* * *
7133756 CATAATTATTAAATGAAGTTGCATTCACTTCAAGGAATGGATGGATTCATAATTATGAC
1 CATAATTATTAAATGAAGTCGCATTCACTTCAAGAAATGGACGGATTCATAATTATGAC
* * *
7133815 CATAATTATTAAATGATGTCGCATTTACTTCAAGAAATGGACGGATTTATAATT
1 CATAATTATTAAATGAAGTCGCATTCACTTCAAGAAATGGACGGATTCATAATT
7133869 TTTTTGTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (59 bp):
CATAATTATTAAATGAAGTCGCATTCACTTCAAGAAATGGACGGATTCATAATTATGAC
Found at i:7145790 original size:3 final size:3
Alignment explanation
Indices: 7145754--7145778 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7145744 CTTCCAACAA
7145754 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
7145779 CCATCCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:7146816 original size:77 final size:77
Alignment explanation
Indices: 7146723--7146889 Score: 221
Period size: 78 Copynumber: 2.2 Consensus size: 77
7146713 TTTGAGAGAG
* * *
7146723 ACATCTTGTGTTTTAGATTTGCTTGT-CCCCAGTCAC-TGCACTTAGTTTGCTTCGTTGTACTGG
1 ACATCTTGTGTTTTAGATTTGCTTGTCCCCCAATCACATG--CTCAGTTTGCTTCATTGTACTGG
7146786 TCACAACTGCTGCA
64 TCACAACTGCTGCA
* * *
7146800 ACATCTTGTGTTTTAGATTTGCTTGTCCCCCAATCACAATGGTCATTTTGCTTCATTGTTCTGGT
1 ACATCTTGTGTTTTAGATTTGCTTGTCCCCCAATCAC-ATGCTCAGTTTGCTTCATTGTACTGGT
*
7146865 CACAGCTGCTGCA
65 CACAACTGCTGCA
*
7146878 ACATCATGTGTT
1 ACATCTTGTGTT
7146890 GCAAATATCA
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
77 26 0.33
78 51 0.65
80 2 0.03
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.40
Consensus pattern (77 bp):
ACATCTTGTGTTTTAGATTTGCTTGTCCCCCAATCACATGCTCAGTTTGCTTCATTGTACTGGTC
ACAACTGCTGCA
Found at i:7149228 original size:32 final size:32
Alignment explanation
Indices: 7149192--7149257 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
7149182 ACACAACAGC
*
7149192 TGTGGTATGACCTGTACCGCTATCTGCATGAT
1 TGTGGTATGACCTGTACCGCCATCTGCATGAT
7149224 TGTGGTATGACCTGTACCGCCATCTGCATGAT
1 TGTGGTATGACCTGTACCGCCATCTGCATGAT
7149256 TG
1 TG
7149258 CAATTAGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (32 bp):
TGTGGTATGACCTGTACCGCCATCTGCATGAT
Found at i:7150288 original size:22 final size:22
Alignment explanation
Indices: 7150247--7150289 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7150237 ACCGCTTTTG
*
7150247 TAATATATAACAACAGGTCACA
1 TAATATATAAAAACAGGTCACA
7150269 TAATATATAAAAATCA-GTCAC
1 TAATATATAAAAA-CAGGTCAC
7150290 GCAAGCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.26
Consensus pattern (22 bp):
TAATATATAAAAACAGGTCACA
Found at i:7150619 original size:111 final size:111
Alignment explanation
Indices: 7150256--7150690 Score: 566
Period size: 112 Copynumber: 3.8 Consensus size: 111
7150246 GTAATATATA
* * * * *
7150256 ACAACAGGTCACATAATATATAAAAATCAGTCACGCAAGCCTTAAAAACTACTGAACAAAAGCCT
1 ACAACAGGTAACACAATATATAAAAACCAGTCACACAAGCCTAAAAAACTACTGAACAAAAGCCT
*
7150321 CAAAGCAACACATGAATTGCACAAGTCAC-ATGCCACCACTCTCGCAAT
66 CAAAACAACACATGAATTGCACAAGTCACGA-GCCACCACTCTCGC--T
* ** * *
7150369 ACATAACAATAGGTCATGCAATATATAAAAACCAGTCACGCAAGCCTAAAAAACTACTAAACAAA
1 AC--AAC---AGGTAACACAATATATAAAAACCAGTCACACAAGCCTAAAAAACTACTGAACAAA
* *
7150434 AGCCTCTAAAACAACACATGAATTGCACAAGTCATGCGCCACCACTCTCGCT
61 AGCCTC-AAAACAACACATGAATTGCACAAGTCACGAGCCACCACTCTCGCT
** * *
7150486 TTAACAGGTAACACAATATATAAAAACCAGTCACACAAGCCTAAAGAACTATTGAACAAAAGCCT
1 ACAACAGGTAACACAATATATAAAAACCAGTCACACAAGCCTAAAAAACTACTGAACAAAAGCCT
* *
7150551 CAAAACAACACATGAATTGCACAAGTCACGAGCCACCATTCTTGCT
66 CAAAACAACACATGAATTGCACAAGTCACGAGCCACCACTCTCGCT
** * *
7150597 ACAACAGGTAACGTAATTTATAAAAACCAGTCACACACTGCCTAAAAAACTACTGAACAAAAGCC
1 ACAACAGGTAACACAATATATAAAAACCAGTCACACA-AGCCTAAAAAACTACTGAACAAAAGCC
7150662 TCAAAACAACACATGAATTGCACAAGTCA
65 TCAAAACAACACATGAATTGCACAAGTCA
7150691 GTCATGCACC
Statistics
Matches: 284, Mismatches: 30, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
111 73 0.26
112 107 0.38
113 2 0.01
115 6 0.02
117 1 0.00
118 55 0.19
119 40 0.14
ACGTcount: A:0.45, C:0.26, G:0.11, T:0.18
Consensus pattern (111 bp):
ACAACAGGTAACACAATATATAAAAACCAGTCACACAAGCCTAAAAAACTACTGAACAAAAGCCT
CAAAACAACACATGAATTGCACAAGTCACGAGCCACCACTCTCGCT
Found at i:7152196 original size:48 final size:48
Alignment explanation
Indices: 7152118--7152299 Score: 184
Period size: 48 Copynumber: 3.6 Consensus size: 48
7152108 CACTTGTCAT
* * *
7152118 GCAACGCTCAACAAATATTAAGTCACGTAATGCTTATAAAGAACTCAC
1 GCAACGCTCAACAAATATTCAGTCACGTAATACTTATAAAAAACTCAC
* * * * *
7152166 GCAATGCTCAACAAATATTCAGTCAAGTAATATTTAGTCACGTAATATCTGTCAC
1 GCAACGCTCAACAAATATTCAGTCACGTAATACTTA-T-A---AAAAAC--TCAC
* *
7152221 GCAACGCTCAACATATATTCAGTCACGTAATACCTATAAAAAACTCAC
1 GCAACGCTCAACAAATATTCAGTCACGTAATACTTATAAAAAACTCAC
* * *
7152269 GCAATGCTCAACAAATATTCAGGCACCTAAT
1 GCAACGCTCAACAAATATTCAGTCACGTAAT
7152300 GCCAAATAAA
Statistics
Matches: 109, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
48 62 0.57
49 1 0.01
50 5 0.05
53 5 0.05
54 1 0.01
55 35 0.32
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.25
Consensus pattern (48 bp):
GCAACGCTCAACAAATATTCAGTCACGTAATACTTATAAAAAACTCAC
Found at i:7152197 original size:15 final size:15
Alignment explanation
Indices: 7152179--7152213 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7152169 ATGCTCAACA
7152179 AATATTCAGTCAAGT
1 AATATTCAGTCAAGT
* *
7152194 AATATTTAGTCACGT
1 AATATTCAGTCAAGT
7152209 AATAT
1 AATAT
7152214 CTGTCACGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (15 bp):
AATATTCAGTCAAGT
Found at i:7153447 original size:17 final size:17
Alignment explanation
Indices: 7153427--7153462 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7153417 TTCACTCCCA
7153427 TTTCGTTTTTTT-TTCTT
1 TTTC-TTTTTTTGTTCTT
7153444 TTTCTTTTTTTGTTCTT
1 TTTCTTTTTTTGTTCTT
7153461 TT
1 TT
7153463 GCCTTCCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (17 bp):
TTTCTTTTTTTGTTCTT
Found at i:7154108 original size:21 final size:21
Alignment explanation
Indices: 7154082--7154127 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
7154072 GGTAATGTAG
7154082 TTGAATTAT-ACATTATTGTGC
1 TTGAATT-TGACATTATTGTGC
7154103 TTGAATTTGGAACATTATTGTGC
1 TTGAATTT-G-ACATTATTGTGC
7154126 TT
1 TT
7154128 TTAATTGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.05
21 7 0.32
23 14 0.64
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (21 bp):
TTGAATTTGACATTATTGTGC
Found at i:7154975 original size:21 final size:21
Alignment explanation
Indices: 7154949--7154994 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
7154939 GGTAATGTAG
7154949 TTGAATTAT-ACATTATTGTGC
1 TTGAATT-TGACATTATTGTGC
7154970 TTGAATTTGGAACATTATTGTGC
1 TTGAATTT-G-ACATTATTGTGC
7154993 TT
1 TT
7154995 TTAATTGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.05
21 7 0.32
23 14 0.64
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (21 bp):
TTGAATTTGACATTATTGTGC
Found at i:7155598 original size:867 final size:866
Alignment explanation
Indices: 7153924--7155635 Score: 3273
Period size: 867 Copynumber: 2.0 Consensus size: 866
7153914 TCTACTTTCA
* * * *
7153924 TTCTTTACTTCTTCTTCTCTTTATTGACTTCGGTTTTTTCGCAATATATGAAAAGTAAGTTTCAG
1 TTCTTTACTTCTTCTTCTCTTTATTGACTTCGGTTTTTCCGCAACATATGAAAAGTAAGTTACAC
7153989 TATCTTGCTTGTGGTCTTATTTTTTAAGCTTTCACATTTGGAAGGGTAGCTGTTCAGAAAGGTGT
66 TATCTTGCTTGTGGTCTTATTTTTTAAGCTTTCACATTTGGAAGGGTAGCTGTTCAGAAAGGTGT
7154054 ATAATTATAGCTTTCGAAGGTAATGTAGTTGAATTATACATTATTGTGCTTGAATTTGGAACATT
131 ATAATTATAGCTTTCGAAGGTAATGTAGTTGAATTATACATTATTGTGCTTGAATTTGGAACATT
7154119 ATTGTGCTTTTAATTGTGTAAATATTACATGTTGTTGACTGCAGTTGTATCAATTATTTTCAGCA
196 ATTGTGCTTTTAATTGTGTAAATATTACATGTTGTTGACTGCAGTTGTATCAATTATTTTCAGCA
7154184 TGAACTTTTGGTTTGTCTTTATATGTAATGACTGATATCCTAAGTTAAATTGTGTTCTTTGCTGT
261 TGAACTTTTGGTTTGTCTTTATATGTAATGACTGATATCCTAAGTTAAATTGTGTTCTTTGCTGT
7154249 TTACCTTGTATCTTCTTTAACTCTTTAAAGTGTAGTTACTGTTTGTTATTCCTTTAACATGGGTG
326 TTACCTTGTATCTTCTTTAACTCTTTAAAGTGTAGTTACTGTTTGTTATTCCTTTAACATGGGTG
7154314 GAGGCTGTTTTCTGTTTCAGGCCCGGTAGTATTTGTTAATCCACGATTTATGGAAGATTAAAAAA
391 GAGGCTGTTTTCTGTTTCAGGCCCGGTAGTATTTGTTAATCCACGATTTATGGAAGATTAAAAAA
7154379 ATCGTGGGCTATTTAGTGAGTAGTCACAGCAAAGTTAAGCAGCTCAAAAGAGCGGTTCTTTTGGT
456 ATCGTGGGCTATTTAGTGAGTAGTCACAGCAAAGTTAAGCAGCTCAAAAGAGCGGTTCTTTTGGT
7154444 ATAATAGCTGATTATGTAATAAAACCCGAACCAAGAATTGCAAGCGTGTTTGTTTGGTCCTGAAA
521 ATAATAGCTGATTATGTAATAAAACCCGAACCAAGAATTGCAAGCGTGTTTGTTTGGTCCTGAAA
*
7154509 ATGACTGAAATCTATATCAGTATATATAGGTAGTTCTTGCCCGTGCCCCTGCAGTATTTCTAACC
586 ATGACTGAAATCTATATCAGTATATATAGGTAGTTCTTGCCCCTGCCCCTGCAGTATTTCTAACC
*
7154574 TTATTTTTTATGTATAAACATTGAGCAGTATTCAGCATTTTTCACTATTGTATTGATCGTTGGAT
651 TTATTTTTTATGAATAAACATTGAGCAGTATTCAGCATTTTTCACTATTGTATTGATCGTTGGAT
7154639 AGTATATTTGGTTTCTTATGTGTGAAGCCATAGTTTTATAAGAGTATTAACAATATTAAATGGTC
716 AGTATATTTGGTTTCTTATGTGTGAAGCCATAGTTTTATAAGAGTATTAACAATATTAAATGGTC
7154704 TTAAATAGGTGCTTCTTTCTGCTGCAACAACCCCGAGTACTGTGAGCAAATTTATATATATATAT
781 TTAAATAGGTGCTTCTTTCTGCTGCAACAACCCCGAGTACTGTGAGCAAATTTATATATATATAT
7154769 ATAAATATGNTTTTTGTTTTTG
846 ATAAATATG-TTTTTGTTTTTG
* * * * *
7154791 TTCTTTACTTTTTCTTCTCTTTGTTTACTTTGGTTTTTCCGCAACATGTGAAAAGT-AGCTTACA
1 TTCTTTACTTCTTCTTCTCTTTATTGACTTCGGTTTTTCCGCAACATATGAAAAGTAAG-TTACA
7154855 CTATCTTGCTTGTGGTCTTATTTTTTAAGCTTTCACATTTGGAAGGGTAGCTGTTCAGAAAGGTG
65 CTATCTTGCTTGTGGTCTTATTTTTTAAGCTTTCACATTTGGAAGGGTAGCTGTTCAGAAAGGTG
7154920 TATAATTATAGCTTTCGAAGGTAATGTAGTTGAATTATACATTATTGTGCTTGAATTTGGAACAT
130 TATAATTATAGCTTTCGAAGGTAATGTAGTTGAATTATACATTATTGTGCTTGAATTTGGAACAT
7154985 TATTGTGCTTTTAATTGTGTAAATATTACATGTTGTTGACTGCAGTTGTATCAATTATTTTCAGC
195 TATTGTGCTTTTAATTGTGTAAATATTACATGTTGTTGACTGCAGTTGTATCAATTATTTTCAGC
7155050 ATGAACTTTTGGTTTGTCTTTATATGTAATGACTGATATCCTAAGTTAAATTGTGTTCTTTGCTG
260 ATGAACTTTTGGTTTGTCTTTATATGTAATGACTGATATCCTAAGTTAAATTGTGTTCTTTGCTG
7155115 TTTACCTTGTATCTTCTTTAACTCTTTAAAGTGTAGTTACTGTTTGTTATTCCTTTAACATGGGT
325 TTTACCTTGTATCTTCTTTAACTCTTTAAAGTGTAGTTACTGTTTGTTATTCCTTTAACATGGGT
7155180 GGAGGCTGTTTTCTGTTTCAGGCCCGGTAGTATTTGTTAATCCACGATTTATGGAAGATTAAAAA
390 GGAGGCTGTTTTCTGTTTCAGGCCCGGTAGTATTTGTTAATCCACGATTTATGGAAGATTAAAAA
7155245 AATCGTGGGCTATTTAGTGAGTAGTCACAGCAAAGTTAAGCAGCTCAAAAGAGCGGTTCTTTTGG
455 AATCGTGGGCTATTTAGTGAGTAGTCACAGCAAAGTTAAGCAGCTCAAAAGAGCGGTTCTTTTGG
7155310 TATAATAGCTGATTATGTAATAAAACCCGAACCAAGAATTGCAAGCGTGTTTGTTTGGTCCTGAA
520 TATAATAGCTGATTATGTAATAAAACCCGAACCAAGAATTGCAAGCGTGTTTGTTTGGTCCTGAA
7155375 AATGACTGAAATCTATATCAGTATATATAGGTAGTTCTTGCCCCTGCCCCTGCAGTATTTCTAAC
585 AATGACTGAAATCTATATCAGTATATATAGGTAGTTCTTGCCCCTGCCCCTGCAGTATTTCTAAC
7155440 CTTATTTTTTATGAATAAACATTGAGCAGTATTCAGCATTTTTCACTATTGTATTGATCGTTGGA
650 CTTATTTTTTATGAATAAACATTGAGCAGTATTCAGCATTTTTCACTATTGTATTGATCGTTGGA
7155505 TAGTATATTTGGTTTCTTATGTGTGAAGCCATAGTTTTATAAGAGTATTAACAATATTAAATGGT
715 TAGTATATTTGGTTTCTTATGTGTGAAGCCATAGTTTTATAAGAGTATTAACAATATTAAATGGT
* **
7155570 CTTAAATAGGTGCTTCTTTCTGCTGCAACAGCTTCGAGTACTGTGAGCAAATTTATATATATATA
780 CTTAAATAGGTGCTTCTTTCTGCTGCAACAACCCCGAGTACTGTGAGCAAATTTATATATATATA
7155635 T
845 T
7155636 GTGGTACAAG
Statistics
Matches: 830, Mismatches: 14, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
866 2 0.00
867 828 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (866 bp):
TTCTTTACTTCTTCTTCTCTTTATTGACTTCGGTTTTTCCGCAACATATGAAAAGTAAGTTACAC
TATCTTGCTTGTGGTCTTATTTTTTAAGCTTTCACATTTGGAAGGGTAGCTGTTCAGAAAGGTGT
ATAATTATAGCTTTCGAAGGTAATGTAGTTGAATTATACATTATTGTGCTTGAATTTGGAACATT
ATTGTGCTTTTAATTGTGTAAATATTACATGTTGTTGACTGCAGTTGTATCAATTATTTTCAGCA
TGAACTTTTGGTTTGTCTTTATATGTAATGACTGATATCCTAAGTTAAATTGTGTTCTTTGCTGT
TTACCTTGTATCTTCTTTAACTCTTTAAAGTGTAGTTACTGTTTGTTATTCCTTTAACATGGGTG
GAGGCTGTTTTCTGTTTCAGGCCCGGTAGTATTTGTTAATCCACGATTTATGGAAGATTAAAAAA
ATCGTGGGCTATTTAGTGAGTAGTCACAGCAAAGTTAAGCAGCTCAAAAGAGCGGTTCTTTTGGT
ATAATAGCTGATTATGTAATAAAACCCGAACCAAGAATTGCAAGCGTGTTTGTTTGGTCCTGAAA
ATGACTGAAATCTATATCAGTATATATAGGTAGTTCTTGCCCCTGCCCCTGCAGTATTTCTAACC
TTATTTTTTATGAATAAACATTGAGCAGTATTCAGCATTTTTCACTATTGTATTGATCGTTGGAT
AGTATATTTGGTTTCTTATGTGTGAAGCCATAGTTTTATAAGAGTATTAACAATATTAAATGGTC
TTAAATAGGTGCTTCTTTCTGCTGCAACAACCCCGAGTACTGTGAGCAAATTTATATATATATAT
ATAAATATGTTTTTGTTTTTG
Found at i:7167668 original size:29 final size:30
Alignment explanation
Indices: 7167636--7167695 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
7167626 CAAATGAAAA
* *
7167636 TGTTACACGCCATATTTAA-AAAATGTTGC
1 TGTTACACACCATATTCAATAAAATGTTGC
*
7167665 TGTTACACACCATATTCAATAAAATTTTGC
1 TGTTACACACCATATTCAATAAAATGTTGC
7167695 T
1 T
7167696 ACATGCTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (30 bp):
TGTTACACACCATATTCAATAAAATGTTGC
Found at i:7181618 original size:20 final size:20
Alignment explanation
Indices: 7181593--7181638 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
7181583 TTTTGACCTC
7181593 ATTTGACTTATTAGAGTATA
1 ATTTGACTTATTAGAGTATA
* *
7181613 ATTTGACTTATTCGAGTATG
1 ATTTGACTTATTAGAGTATA
7181633 ATTTGA
1 ATTTGA
7181639 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTAGAGTATA
Found at i:7186520 original size:21 final size:19
Alignment explanation
Indices: 7186481--7186529 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
7186471 CTCTTATTCC
7186481 CTTTCTTTTTCCTTCTCTT
1 CTTTCTTTTTCCTTCTCTT
*
7186500 CTAATTCTTTTT-CTTATTCTT
1 CT--TTCTTTTTCCTT-CTCTT
7186521 CTTTCTTTT
1 CTTTCTTTT
7186530 CTGATGTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 9 0.35
20 3 0.12
21 14 0.54
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.69
Consensus pattern (19 bp):
CTTTCTTTTTCCTTCTCTT
Found at i:7200750 original size:171 final size:170
Alignment explanation
Indices: 7200450--7206275 Score: 5585
Period size: 171 Copynumber: 34.2 Consensus size: 170
7200440 NNNNNNNNNG
* * *
7200450 CATAATTGATTTTAAGTTCAATTTTTT--TTCTTTTGGATAAAACAGATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTCAAT-TTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * **
7200513 CCTCGAGAAACGTGAAGC-ACATA-CCATCCGTTGATGAGAAAAGTCCATTTATAGGCGTTCATG
65 CCTTGGGAAACGTGAAGCGA-A-AGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATG
** * *
7200576 CCTTAAAAAGCCTTATTACTCGCTATAAATGGTTTTATAAACT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * ** *
7200619 CATAATTGATTTTAAGTTGAATTTTTATCAATTTTTGGTTAAAATAGATAATAATTGAACATTTG
1 CATAATTGATTTTAAGTTGAATTTTT-TCAATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * ** * * ** * * *
7200684 CCTTGGGAAATGTCAAATGAAAGTCATCCATTGACAAGAAAAGTTTATTTGTATTCACCCATGCC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
7200749 TTCGAAAGTCTTAGTACTCG-TTATGAATGGTTTTATAATCT
130 TTCGAAAGCCTTATTACTCGCTT-TAAATGGTTTTATAATCT
* *
7200790 CATAATTGATTTTAAATTGAATTTTTTTTTTACATTTTTTGGTTAAAACAGATTATAATTGAATG
1 CATAATTGATTTTAAGTTGAA----TTTTTT-CAATTTTTGGTTAAAACAGATTATAATTGAATG
*** ** * * * * * * * **
7200855 TTTACCTCAAGAAATATGAAGCAAAAGCTATCTATTTACACGAAAAGTCTATTTGCAGTCACTCA
61 TTTACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCA
* * * *
7200920 TGCCTTCGAAACCCTTACTACTTGCTTTAAATGATTTTATAATCT
126 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* *
7200965 CATAATTGATTTTAAGTTGAATTTTTTCACATTTTGTGGTTAAAACATATTGTAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTTTTTCA-ATTTT-TGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
7201030 GCCTGGGGAAACAT-AAGGCAAAAGCTATCCATTAATAA-AAAAGGT-TATTTAAAGTCACTCAT
64 ACCTTGGGAAACGTGAA-GCGAAAGCCATCCATTGATAAGAAAA-GTCCATTTATAGTCACTCAT
** ** * * *
7201092 TTCTTTAAAAGCCTTATTAGTCGATTTAAATGATTTTATAATCT
127 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7201136 CATAATTGCTTTTAAGTTAAACTTTTTTTC-GTTTTTGGTTAAAACAGTTTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAA--TTTTTTCAATTTTTGGTTAAAACAGATTATAATTGAATGTTT
** * * * * * *
7201200 ACCTCCGGAAACATGAAGCAAAAGCCATCGATTAAGAAGAAAAGTCCATTTATAGTCACTCAT-T
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
7201264 TTTCGAAAGCCTTATTACTCGTTTTAAATAGTTTTATAACCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* *
7201306 CATAATTGATATTAAGTTGAATTCTTTT-ACATTTTTAGTTAAAACAGATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATT-TTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * *
7201370 ATCC-TGAGAAACGTGAGGTGAAAGCTATCCATTGATAATAAAAGGT-TATTTAAAGTCACTCAT
64 A-CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAA-GTCCATTTATAGTCACTCAT
* * * * *
7201433 GCCTTCGAAAGCCTTATTAGTCACTTTAAATAGTATTACAATCT
127 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* *
7201477 CATAATTGATTTTAAGTTGAATTTGTTTTACATTTTTGGTTAAAACAGGTTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTT-TTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
*** * * * * *
7201542 ACCTCCAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTTCATCTATAGTGACTCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
** * * *
7201607 CTTTAAAAGCCTTATTACTTGCTTTAATTGGTTTTATAATCA
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
7201649 CATAATTGATTTTAAGTTGAATTTTTTTTTCTACATTTTTGGTTAAAACAGATTATAATT-AATG
1 CATAATTGATTTTAAGTTGAA---TTTTTTC-A-ATTTTTGGTTAAAACAGATTATAATTGAATG
* ** * * * * * * *
7201713 TTTATCTTGGGAAACACGAAGCGAAAGTCATACGTTGACAAAAAAAATCCATTTATAGTCACGCA
61 TTTACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCA
* * *
7201778 TGCCTTTGAATGCCTTATTACTCGCTTTAAATGGTTTTATAACCT
126 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7201823 TATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAAATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * *
7201888 CCTCGAGAAACGTGAAGTGCAAGCCAT-CGTTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
** * *
7201952 TTTTAAAGCCTAATTACTCGCGTTAAATGGTTTTATAATCT
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * * *
7201993 CATAATTGATTTTAAGTTGAATTTTTTTAACTTTTTAGTTAAAATAGATTATAATTTCAATATTT
1 CATAATTGATTTTAAGTTGAATTTTTTCAA-TTTTTGGTTAAAACAGATTATAA-TTGAATGTTT
* * * * * * * * **
7202058 GCATTAGGAAACATGAAGCGAAAGTCATCCATTG-TGAAGAAAAGTTCATTTATATTCTCTCACA
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGAT-AAGAAAAGTCCATTTATAGTCACTCATG
* * ** *
7202122 CCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTT-TTGTTT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7202164 CATAATTGATTTTAAGTTGAATTTTTTTATGTTTTTTGTTAAAACAGATTATAATTGAATATTTA
1 CATAATTGATTTTAAGTTGAATTTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * ** *
7202229 CCTTGGGAAACATGATGCGAATGTCATGTATTGACAA-AAGAAGTCCATTTATAAG--AGCTCAT
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAA-AAGTCCATTTAT-AGTCA-CTCAT
* ** *
7202291 GCCTTCGAAAGCTTTATTACTCGCTACAAATGGTTTTATGATCT
127 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* *
7202335 CATAATTGATTTTAAGTTGAATTGTTTTACATTTTTTAGTTAAAACAGATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATT-TTTT-CAATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * *
7202400 ATCTT--G--A---GAAG-GAAA-CCATTCC-TTAAGAAGAAAAGTTCATTTAGAGTCACTCATA
64 ACCTTGGGAAACGTGAAGCGAAAGCCA-TCCATTGATAAGAAAAGTCCATTTATAGTCACTCATG
*
7202455 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAACCT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7202498 CATAATTGATTTTAAGCTTG-ATTTTTTTACATTTTTGATTAAAACATATTATAATT-AATGTTT
1 CATAATTGATTTTAAG-TTGAATTTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
** * ** ** * * *
7202561 ACCTCAGGAAACGTGAGGTAAAAGCCATCCATTGATAAGAAAAGTTTATTTAAAGTCACTTATAC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
7202626 CTTTGAAAGCCTTATTAGTCACTTTAAATGGTTTTATAATCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * * *
7202668 CATAATTGCTTTAAAGTTGAATTTTTGT-ACATTTTTAGTTAAAACAGATTATAATTAAATGTTC
1 CATAATTGATTTTAAGTTGAATTTTT-TCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * *
7202732 ACCTTGGGAAACCT-ATAACGAAAGGCATCCATTGACAA-AGAAAGTCCATTTATAGTCGC-CTA
64 ACCTTGGGAAACGTGA-AGCGAAAGCCATCCATTGATAAGA-AAAGTCCATTTATAGTCACTC-A
* * * * * *
7202794 TGGCATCAAAAGCCTTATTACTCACTTTAAATGGTTTGATAACCT
126 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7202839 TATAATTGATTTTAAGTTCAATTTTTTTTC-TTTTTTGGTTAAAACAGATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAA--TTTTTTCAATTTTTGGTTAAAACAGATTATAATTGAATGTTT
** *** * * * * * *
7202903 GTCTCAAGAAACGTGAAACGCAAGCCATCCGTTGATAAGAAAAGTCTACTTATTAG-CATTCATG
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTA-TAGTCACTCATG
* * *
7202967 CCTT-TAGAGCCTTATTACTC-ATTATAAATGGTTTTATAATCT
128 CCTTCGAAAGCCTTATTACTCGCTT-TAAATGGTTTTATAATCT
* * * *
7203009 CATAATTGATTTGAAGTTGAATTTTTTTCAATTTTTTGATTAAAATAGATTATAATTGAATGTTC
1 CATAATTGATTTTAAGTTGAA-TTTTTTCAA-TTTTTGGTTAAAACAGATTATAATTGAATGTTT
*** * * * * *
7203074 ACCTCAAGAAACATGAAGCAAAAGCCATCCATTGATAAAAAAAGTCTATTTGTAGTCACTCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
7203139 CTTCGAAAGCCTTAGTACTCACTATAAATGCTGTTATAATCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
*
7203181 CATAATTGATTTTAAGTTGAATTTCTTTTCTTACGTTTTTTGGTTAAAACAGATTATAATTGAAT
1 CATAATTGATTTTAAGTTGAA-TT-TTTTC--A--ATTTTTGGTTAAAACAGATTATAATTGAAT
* * * * *
7203246 GTTTACCTTAGGAAACATGAAGCAAAAGCCATCCATTGATACGAAAAGTCCATTTGTAGTCACTC
60 GTTTACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTC
* * * * * *
7203311 ATGCCTTCAAAACCCTTACTACTTGCTTTAAATTGTTTTATAATTT
125 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7203357 CATAATTGATTTTAAGTTGAATTTTTTTACAGTTTTTGGTTAAAACAGATTGTAGA-TGAATCTT
1 CATAATTGATTTTAAGTTGAA-TTTTTT-CAATTTTTGGTTAAAACAGATTATA-ATTGAATGTT
* * * * * *
7203421 TCCCTCGGGAAACGT-AAGGCAAAAGCCATCCATTGATAAGAAGAGGT-TATTTAAAGTCACTCA
63 TACCTTGGGAAACGTGAA-GCGAAAGCCATCCATTGATAAGAA-AAGTCCATTTATAGTCACTCA
* * *
7203484 TGCCTTCGAAAACCTTATTAGTCACTTTAAATGGTTTTATAATCT
126 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
** * * * * * *
7203529 CATAATTTCTTTTGAGTGGAATTTCTTTCCATTTTTGATTAAACCAGATTATAATTGAATATTTA
1 CATAATTGATTTTAAGTTGAATTT-TTTCAATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
** * * * *
7203594 CCTCAGGAAAC----A-CGAACGTCATCCATTGAAAAGGAAAGTCCATTTATAGTCACTCATGCC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * * *
7203654 TTTGAAAGCCTCATTAGTTGCTTTAAATGGTTTTATAACCT
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7203695 CAAAATTGATTTTAAGTTCAATGTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAAT-TTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
7203760 GCCTTGAG-AACGTGAAGCAAAAGCCATCTATTGACACGAAAAGTTCATTTGTAGTCACTCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
7203824 CTTCAAAAGCCTTATTAATCACTTTAAATGGTTTTATAATCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7203866 CATACTTCATTTTAAGTTGAATTTTTTGC-ATTTTTGATTAAAACAGATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTT-CAATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * *
7203930 CCTTAGGAAGCGTGAAGCGAAACCCCTCCATTGACAAGAAAAGTTCATTTATAGTGACTTATGCC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
7203995 TTCAAAAGCCTTGTTACTCGCTTTAAATGATTTTATAATCT
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* *
7204036 CATAATTGATTTTAAGTTGAATTATTTTCTACATTTTTGGTTAAAACAAATTCTAATT-AATGTT
1 CATAATTGATTTTAAGTTGAATT-TTTTC-A-ATTTTTGGTTAAAACAGATTATAATTGAATGTT
* * * * * * * *
7204100 TACCTTGAGAAACATGAAGCAAAAGTCATACGTTGATAAGAAAAGTCCATTTATAGTCACTTATA
63 TACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATG
* * *
7204165 CCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTCATAACCT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * * *
7204208 TATAATTGATTTTAAGTTCAAATTTTTT-ACTTTATTAGTTAAAACAGATTATAGTTGAATGTTT
1 CATAATTGATTTTAAGTT-GAATTTTTTCAATTT-TTGGTTAAAACAGATTATAATTGAATGTTT
* ** * * *
7204272 CCCTCAGGAAACATGAAGCGCAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * * **
7204337 CTTTGAAAGCCTAATTACTTGAGTTAAATGGTTTTATAATCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7204379 CATAATTGATTTTAAATTGAATGTTTTT-ACCTTTTTGGTTAAAACAGATTATAATTCAATATTT
1 CATAATTGATTTTAAGTTGAAT-TTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * **
7204443 GCCTTGGGAAACGTAAAGCGAAAGCCATCTATTG-TGAAGAAAAGTTCATTTATAGTCTCTCACA
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGAT-AAGAAAAGTCCATTTATAGTCACTCATG
* *
7204507 CCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAAT-T
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7204549 CATTATTGATTTTAAGTTGAATTTTTTTATGTTTTTAGTTAAAACAGATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * ** ** * * *
7204614 CCTTAGGAAACATGATGCGAATGTTATGTATTGACAAGAGAAGTCCATTTATAAG-CGCTCATGC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTAT-AGTCACTCATGC
* *
7204678 CTTCGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7204720 CATAATTGATTTTAAGTT-AA-----T---TTTTTGATTAAAATAGATTATAATTGAACGTTTGC
1 CATAATTGATTTTAAGTTGAATTTTTTCAATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * *
7204776 CTTGGGAAATGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCATACCT
66 CTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCT
*
7204841 TCGAAAGCCTTATTACTCGCTATAAATGGTTTTATAATCT
131 TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7204881 CATAATTGATTTTAAGTTAAATTTGTTTACATTTTTTAGTTAAAACATATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTT-TTT-CAATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * * *
7204946 ACCATGAGAAATGTGAAGCGAAAGCCATTCATTAAGAAGAGAAGTTCATTTAGAGTCACTCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
7205011 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAAT-T
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
** * * *
7205052 CATAAACGATTTTGAGTTGAATTTCTT-ATATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * ** ** *
7205116 CCTTGGAAAACATGATGC-AAATGTCATATATTGATAAGAGTAGTCCATTTATAAG-CGCTCATG
65 CCTTGGGAAACGTGAAGCGAAA-GCCATCCATTGATAAGAAAAGTCCATTTAT-AGTCACTCATG
* * *
7205179 CCTTTGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7205222 CATAATTGATTTTAAATTGAATTTTTTCAATTTTTTGGTTAAAA-TGTATTATAATTGAACGTTT
1 CATAATTGATTTTAAGTTGAATTTTTTCAA-TTTTTGGTTAAAACAG-ATTATAATTGAATGTTT
* * * * * *
7205286 GCCTTGGGAAATGTGAAGCAAAAGTCATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
7205351 CTTCAAAAGCCTGATTACTCACTATAAATGGTTTTATAATCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * * *
7205393 TATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTAGTTAAAACAGATTATAAGTGAATGTTT
1 CATAATTGATTTTAAGTTGAA-TTTTTT-CAATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * * * * *
7205458 ACCATGAGAAATGTGAAGCGGAAGCCATTCATTAAGAAGAAAAGTTCATTTAGAGTCACTAATGT
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * **
7205523 CTTCAAAAACCTTATTACTCGCTTTAAATGGTTTTATAGCCT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7205565 CATAATTGATTTGAAGTTTAATTTTTTTACATTTTTGGTTAAAACATATTATAATT-AATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * ** * *
7205629 CGTTAGGAAACGTGAGGCGAAAGCCATCCACTGATAAGAAAAGTTTATTTAAAGTCACTTATGCC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
* *
7205694 TTCGAAAGCCTTATTAGTTGCTTTAAATGGTTTTATAATCT
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7205735 CATAATTGCTTTAAAGTTGAATTTTTGT-ATATTTTTGGTTAAAACATATTATAATTGAATATTT
1 CATAATTGATTTTAAGTTGAATTTTT-TCA-ATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * *
7205799 ACCTTGAGAAATGT-ATAGCAAAAGGCATCCATTGAAAAGAAAAGTCTATTTATAGTCACCCATG
64 ACCTTGGGAAACGTGA-AGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
7205863 GCATCAAAAGCCTTATTACTTGCTTTAAATGGTTTGATAACCT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * * *
7205906 TATAATTGATTTTAAGTTCAATTTCTTTC-TTTTTTGGTTAAAACATATTATAATTGAATGTTTG
1 CATAATTGATTTTAAGTTGAATTT-TTTCAATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * * **
7205970 TCTTGGAAAATGTGAAACGCAAGCCATCCATCGATAAGAAAAGTCCATTTATAGGCATTCATTTC
65 CCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
7206035 TT-TAGAAGCCTTATTACTCGCTATAAATAGTTTTATAATCT
130 TTCGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * *
7206076 CATAATTGATTTTAAGTTGAACTTTTTTTAATTTTTTGGTTAAAATAGATTATAATTGAACGTTT
1 CATAATTGATTTTAAGTTGAA-TTTTTTCAA-TTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * ** * * * *
7206141 GCCTCGAGAAACGTGAAGTGAAAATCATCCATTGAGAAGAAAAGTCCATTTGTAGTAACCCATGC
64 ACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
7206206 CTTTGAAAGCCTTAGTT-CTCACTATGAATGGTTTTATAACCT
129 CTTCGAAAGCCTTA-TTACTCGCTTTAAATGGTTTTATAATCT
*
7206248 CATAATTGATTTTAAGTTGCAGTTTTTT
1 CATAATTGATTTTAAGTTG-AATTTTTT
7206276 TTTTTTTTTT
Statistics
Matches: 4675, Mismatches: 826, Indels: 309
0.80 0.14 0.05
Matches are distributed among these distances:
160 2 0.00
161 146 0.03
162 30 0.01
163 80 0.02
164 10 0.00
165 8 0.00
166 93 0.02
167 37 0.01
168 12 0.00
169 210 0.04
170 1170 0.25
171 1388 0.30
172 996 0.21
173 57 0.01
174 116 0.02
175 171 0.04
176 149 0.03
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
CATAATTGATTTTAAGTTGAATTTTTTCAATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
CTTGGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCT
TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
Found at i:7201423 original size:341 final size:340
Alignment explanation
Indices: 7200450--7206276 Score: 5713
Period size: 341 Copynumber: 17.1 Consensus size: 340
7200440 NNNNNNNNNG
* *
7200450 CATAATTGATTTTAAGTTCAATTTTTTT--TCTTTTGGATAAAACAGATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTTCAT-TTTTGGTTAAAACAGATTATAATTGAATGTTTA
* ** * **
7200513 CCTC-GAGAAACGTGAAGC-ACATA-CCATCCGTTGATGAGAAAAGTCCATTTATAGGCGTTCAT
65 CCTCAG-GAAACGTGAAGCGA-A-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
** * *
7200575 GCCTTAAAAAGCCTTATTACTCGCTATAAATGGTTTTATAAACTCATAATTGATTTTAAGTTGAA
127 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA
* * ** * * * **
7200640 -TTTTTATCAATTTTTGGTTAAAATAGATAATAATTGAACATTT-GCCTTGGGAAATGTCAAATG
192 TTTTTTA-C-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCG
* * * * * * *
7200703 AAAGTCATCCATTGACAAGAAAAGTTTATTTGTATTCACCCATGCCTTCGAAAGTCTTAGTACTC
255 AAAGCCATCCATTGATAAGAAAAG-TTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* *
7200768 -GTTATGAATGGTTTTATAATCT
319 ACTT-TAAATGGTTTTATAATCT
*
7200790 CATAATTGATTTTAAATTGAATTTTTTTTTTACATTTTTTGGTTAAAACAGATTATAATTGAATG
1 CATAATTGATTTTAAGTTGAA---TTTTTTT-CA-TTTTTGGTTAAAACAGATTATAATTGAATG
* ** * * * * * * **
7200855 TTTACCTCAAGAAATATGAAGCAAAAGCTATCTATTTACACGAAAAGTCTATTTGCAGTCACTCA
61 TTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * *
7200920 TGCCTTCGAAACCCTTACTACTTGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGA
126 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
* * * * *
7200985 ATTTTTTCACATTTTGTGGTTAAAACATATTGTAATTGAATGTTT-GCCTGGGGAAACAT-AAGG
191 ATTTTTT-ACATTTT-TGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAA-G
* * * * ** ** *
7201048 CAAAAGCTATCCATTAATAA-AAAAGGTTATTTAAAGTCACTCATTTCTTTAAAAGCCTTATTAG
253 CGAAAGCCATCCATTGATAAGAAAA-GTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
*
7201112 TCGA-TTTAAATGATTTTATAATCT
317 TC-ACTTTAAATGGTTTTATAATCT
* * * *
7201136 CATAATTGCTTTTAAGTTAAACTTTTTTTCGTTTTTGGTTAAAACAGTTTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * **
7201201 CCTCCGGAAACATGAAGCAAAAGCCATCGATTAAGAAGAAAAGTCCATTTATAGTCACTCAT-TT
65 CCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * *
7201265 TTCGAAAGCCTTATTACTCGTTTTAAATAGTTTTATAACCTCATAATTGATATTAAGTTGAATTC
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-
* * * *
7201330 TTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTATCC-TGAGAAACGTGAGGTGAAAG
194 TTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGAAAG
* * * *
7201394 CTATCCATTGATAATAAAAGGTTATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTAGTCACTT
259 CCATCCATTGATAAGAAAA-GTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTT
* * *
7201459 TAAATAGTATTACAATCT
323 TAAATGGTTTTATAATCT
*
7201477 CATAATTGATTTTAAGTTGAATTTGTTTTACATTTTTGGTTAAAACAGGTTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTT-TTTT-CATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * *
7201542 ACCTCCA-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTTCATCTATAGTGACTCATG
64 ACCT-CAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** * * *
7201606 CCTTTAAAAGCCTTATTACTTGCTTTAATTGGTTTTATAATCACATAATTGATTTTAAGTTGAAT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-
* * **
7201671 TTTTTTTTCTACATTTTTGGTTAAAACAGATTATAATT-AATGTTTA-TCTTGGGAAACACGAAG
192 ---TTTTT-TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAG
* * * * * * * * * *
7201734 CGAAAGTCATACGTTGACAAAAAAAATCCATTTATAGTCACGCATGCCTTTGAATGCCTTATTAC
253 CGAAAGCCATCCATTGATAAGAAAAGT-TATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
* *
7201799 TCGCTTTAAATGGTTTTATAACCT
317 TCACTTTAAATGGTTTTATAATCT
* * *
7201823 TATAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAAATTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTT-CATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * *
7201888 CCTC-GAGAAACGTGAAGTGCAAGCCAT-CGTTGATAAGAAAAGTCCATTTATAGTCACTCATGC
65 CCTCAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
** * *
7201951 CTTTTAAAGCCTAATTACTCGCGTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-T
* * * * * *
7202016 TTTTTA-ACTTTTTAGTTAAAATAGATTATAATTTCAATATTT-GCATT-AGGAAACATGAAGCG
193 TTTTTACA-TTTTTGGTTAAAACAGATTATAA-TTGAATGTTTAGCCTTGA-GAAACGTGAAGCG
* * * ** *
7202078 AAAGTCATCCATTG-TGAAGAAAAGTTCATTTATATTCTCTCACACCTTTGAAAGCCTTATTACT
255 AAAGCCATCCATTGAT-AAGAAAAGTT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
** *
7202142 CACTTTAAATGGTTTT-TTGTTT
318 CACTTTAAATGGTTTTATAATCT
* *
7202164 CATAATTGATTTTAAGTTGAATTTTTTT-ATGTTTTTTGTTAAAACAGATTATAATTGAATATTT
1 CATAATTGATTTTAAGTTGAATTTTTTTCA--TTTTTGGTTAAAACAGATTATAATTGAATGTTT
** * * * * **
7202228 ACCTTGGGAAACATGATGCGAATGTCATGTATTGACAA-AAGAAGTCCATTTATAAG--AGCTCA
64 ACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAA-AAGTCCATTTAT-AGTCA-CTCA
* ** *
7202290 TGCCTTCGAAAGCTTTATTACTCGCTACAAATGGTTTTATGATCTCATAATTGATTTTAAGTTGA
126 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
* *
7202355 ATTGTTTTACATTTTTTAGTTAAAACAGATTATAATTGAATGTTTA-TCTT--G--A---GAAG-
191 ATT-TTTTACA-TTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGC
* * * *
7202411 GAAA-CCATTCC-TTAAGAAGAAAAGTTCATTTAGAGTCACTCATACCTTCGAAAGCCTTATTAC
254 GAAAGCCA-TCCATTGATAAGAAAAGTT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
* *
7202474 TCGCTTTAAATGGTTTTATAACCT
317 TCACTTTAAATGGTTTTATAATCT
* *
7202498 CATAATTGATTTTAAGCTTG-ATTTTTTTACATTTTTGATTAAAACATATTATAATT-AATGTTT
1 CATAATTGATTTTAAG-TTGAATTTTTTT-CATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* ** * ** * * *
7202561 ACCTCAGGAAACGTGAGGTAAAAGCCATCCATTGATAAGAAAAGTTTATTTAAAGTCACTTATAC
64 ACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
7202626 CTTTGAAAGCCTTATTAGTCACTTTAAATGGTTTTATAATCTCATAATTGCTTTAAAGTTGAATT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
* * * * * *
7202691 TTTGTACATTTTTAGTTAAAACAGATTATAATTAAATGTTCA-CCTTGGGAAACCT-ATAACGAA
194 TTT-TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGA-AGCGAA
* * * * * * *
7202754 AGGCATCCATTGACAA-AGAAAGTCCATTTATAGTCGC-CTATGGCATCAAAAGCCTTATTACTC
257 AGCCATCCATTGATAAGA-AAAGT-TATTTATAGTCACTC-ATGCCTTCGAAAGCCTTATTACTC
* *
7202817 ACTTTAAATGGTTTGATAACCT
319 ACTTTAAATGGTTTTATAATCT
* * * *
7202839 TATAATTGATTTTAAGTTCAATTTTTTTTCTTTTTTGGTTAAAACAGATTATAATTGAATGTTTG
1 CATAATTGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * * *
7202904 TCTCAAGAAACGTGAAACGCAAGCCATCCGTTGATAAGAAAAGTCTACTTATTAG-CATTCATGC
65 CCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGC
* * * *
7202968 CTT-TAGAGCCTTATTACTC-ATTATAAATGGTTTTATAATCTCATAATTGATTTGAAGTTGAAT
129 CTTCGAAAGCCTTATTACTCGCTT-TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAT
* * * * ** * *
7203031 TTTTTTCAATTTTTTGATTAAAATAGATTATAATTGAATGTTCA-CCTCAAGAAACATGAAGCAA
193 TTTTTAC-A-TTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGA
* * *
7203095 AAGCCATCCATTGATAAAAAAAGTCTATTTGTAGTCACTCATGCCTTCGAAAGCCTTAGTACTCA
256 AAGCCATCCATTGATAAGAAAAGT-TATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCA
* * *
7203160 CTATAAATGCTGTTATAATCT
320 CTTTAAATGGTTTTATAATCT
7203181 CATAATTGATTTTAAGTTGAATTTCTTTTCTTACGTTTTTTGGTTAAAACAGATTATAATTGAAT
1 CATAATTGATTTTAAGTTGAATTT-TTTTC--A---TTTTTGGTTAAAACAGATTATAATTGAAT
* * * * * *
7203246 GTTTACCTTAGGAAACATGAAGCAAAAGCCATCCATTGATACGAAAAGTCCATTTGTAGTCACTC
60 GTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * *
7203311 ATGCCTTCAAAACCCTTACTACTTGCTTTAAATTGTTTTATAATTTCATAATTGATTTTAAGTTG
125 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
* * * * *
7203376 AATTTTTTTACAGTTTTTGGTTAAAACAGATTGTAGA-TGAATCTTT-CCCTCGGGAAACGT-AA
190 AA-TTTTTTACA-TTTTTGGTTAAAACAGATTATA-ATTGAATGTTTAGCCTTGAGAAACGTGAA
* * * *
7203438 GGCAAAAGCCATCCATTGATAAGAAGAGGTTATTTAAAGTCACTCATGCCTTCGAAAACCTTATT
252 -GCGAAAGCCATCCATTGATAAGAA-AAGTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATT
*
7203503 AGTCACTTTAAATGGTTTTATAATCT
315 ACTCACTTTAAATGGTTTTATAATCT
** * * * * * *
7203529 CATAATTTCTTTTGAGTGGAATTTCTTTCCATTTTTGATTAAACCAGATTATAATTGAATATTTA
1 CATAATTGATTTTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * *
7203594 CCTCAGGAAAC----A-CGAACGTCATCCATTGAAAAGGAAAGTCCATTTATAGTCACTCATGCC
65 CCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * * * * *
7203654 TTTGAAAGCCTCATTAGTTGCTTTAAATGGTTTTATAACCTCAAAATTGATTTTAAGTTCAATGT
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA--T
*
7203719 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT-GCCTTGAG-AACGTGAAGCAAAA
193 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGAAA
* * * * * *
7203782 GCCATCTATTGACACGAAAAGTTCATTTGTAGTCACTCATGCCTTCAAAAGCCTTATTAATCACT
258 GCCATCCATTGATAAGAAAAGTT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACT
7203847 TTAAATGGTTTTATAATCT
322 TTAAATGGTTTTATAATCT
* * * *
7203866 CATACTTCATTTTAAGTTGAATTTTTTGCATTTTTGATTAAAACAGATTATAATTGAATGTTTAC
1 CATAATTGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * * *
7203931 CTTAGGAAGCGTGAAGCGAAACCCCTCCATTGACAAGAAAAGTTCATTTATAGTGACTTATGCCT
66 CTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * *
7203996 TCAAAAGCCTTGTTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGAATTAT
131 TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-T-T
* * * *
7204061 TTTCTACATTTTTGGTTAAAACAAATTCTAATT-AATGTTTA-CCTTGAGAAACATGAAGCAAAA
194 TTT-TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGAAA
* * * * * * * *
7204124 GTCATACGTTGATAAGAAAAGTCCATTTATAGTCACTTATACCTTTGAAAGCCTTATTACTCGCT
258 GCCATCCATTGATAAGAAAAGT-TATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACT
* *
7204189 TTAAATGGTTTCATAACCT
322 TTAAATGGTTTTATAATCT
* * * * *
7204208 TATAATTGATTTTAAGTTCAAATTTTTT-ACTTTATTAGTTAAAACAGATTATAGTTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTTTTTTCA-TTT-TTGGTTAAAACAGATTATAATTGAATGTTT
* * *
7204272 CCCTCAGGAAACATGAAGCGCAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
64 ACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * ** *
7204337 CTTTGAAAGCCTAATTACTTGAGTTAAATGGTTTTATAATCTCATAATTGATTTTAAATTGAATG
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAT-
* * * * *
7204402 TTTTTACCTTTTTGGTTAAAACAGATTATAATTCAATATTT-GCCTTGGGAAACGTAAAGCGAAA
193 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGAAA
* * ** *
7204466 GCCATCTATTG-TGAAGAAAAGTTCATTTATAGTCTCTCACACCTTTGAAAGCCTTATTACTCAC
258 GCCATCCATTGAT-AAGAAAAGTT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCAC
7204530 TTTAAATGGTTTTATAAT-T
321 TTTAAATGGTTTTATAATCT
* *
7204549 CATTATTGATTTTAAGTTGAATTTTTTT-ATGTTTTTAGTTAAAACAGATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTTTTTTCA--TTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * ** ** * *
7204613 ACCTTAGGAAACATGATGCGAATGTTATGTATTGACAAGAGAAGTCCATTTATAAG-CGCTCATG
64 ACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGTCACTCATG
* *
7204677 CCTTCGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTT-AA-
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAT
* * * * *
7204740 ----T---TTTTTGATTAAAATAGATTATAATTGAACGTTT-GCCTTGGGAAATGTGAAGCGAAA
193 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGAAA
* *
7204797 GCCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCT
258 GCCATCCATTGATAAGAAAAGT-TATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACT
*
7204862 ATAAATGGTTTTATAATCT
322 TTAAATGGTTTTATAATCT
* * * *
7204881 CATAATTGATTTTAAGTTAAATTTGTTTACATTTTTTAGTTAAAACATATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTT-TTTTCA-TTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
7204946 ACCATGA-GAAATGTGAAGCGAAAGCCATTCATTAAGAAGAGAAGTTCATTTAGAGTCACTCATG
64 ACC-TCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** *
7205010 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAAT-TCATAAACGATTTTGAGTTGAAT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAT
* * * * *
7205074 TTCTTATATTTTTAGTTAAAACAGATTATAATTGAATGTTTA-CCTTG-GAAAACATGATGC-AA
193 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAG-AAACGTGAAGCGAA
* ** ** * * *
7205136 ATGTCATATATTGATAAGAGTAGTCCATTTATAAG-CGCTCATGCCTTTGAAAGCCTTATTACTC
257 A-GCCATCCATTGATAAGAAAAGT-TATTTAT-AGTCACTCATGCCTTCGAAAGCCTTATTACTC
*
7205200 ACTATAAATGGTTTTATAATCT
319 ACTTTAAATGGTTTTATAATCT
* * *
7205222 CATAATTGATTTTAAATTGAA-TTTTTTCAATTTTTTGGTTAAAA-TGTATTATAATTGAACGTT
1 CATAATTGATTTTAAGTTGAATTTTTTTC-A-TTTTTGGTTAAAACAG-ATTATAATTGAATGTT
* ** * * * *
7205285 TGCCTTGGGAAATGTGAAGCAAAAGTCATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATG
63 TACCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
7205350 CCTTCAAAAGCCTGATTACTCACTATAAATGGTTTTATAATCTTATAATTGATTTTAAGTTAAAT
128 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-
* * * * *
7205415 TTTTTTACATTTTTTAGTTAAAACAGATTATAAGTGAATGTTTA-CCATGAGAAATGTGAAGCGG
192 TTTTTTACA-TTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGA
* * * * * * * * *
7205479 AAGCCATTCATTAAGAAGAAAAGTTCATTTAGAGTCACTAATGTCTTCAAAAACCTTATTACTCG
256 AAGCCATCCATTGATAAGAAAAGTT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCA
**
7205544 CTTTAAATGGTTTTATAGCCT
320 CTTTAAATGGTTTTATAATCT
* * *
7205565 CATAATTGATTTGAAGTTTAATTTTTTTACATTTTTGGTTAAAACATATTATAATT-AATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTT-CATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * ** * *
7205629 CGTTAGGAAACGTGAGGCGAAAGCCATCCACTGATAAGAAAAGTTTATTTAAAGTCACTTATGCC
65 CCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * *
7205694 TTCGAAAGCCTTATTAGTTGCTTTAAATGGTTTTATAATCTCATAATTGCTTTAAAGTTGAATTT
130 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT
* * * * *
7205759 TTGTATATTTTTGGTTAAAACATATTATAATTGAATATTTA-CCTTGAGAAATGT-ATAGCAAAA
195 TT-TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGA-AGCGAAA
* * * * * * **
7205822 GGCATCCATTGAAAAGAAAAGTCTATTTATAGTCACCCATGGCATCAAAAGCCTTATTACTTGCT
258 GCCATCCATTGATAAGAAAAGT-TATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACT
* *
7205887 TTAAATGGTTTGATAACCT
322 TTAAATGGTTTTATAATCT
* * * * * **
7205906 TATAATTGATTTTAAGTTCAATTTCTTTCTTTTTTGGTTAAAACATATTATAATTGAATGTTTGT
1 CATAATTGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * * * * **
7205971 CT-TGGAAAATGTGAAACGCAAGCCATCCATCGATAAGAAAAGTCCATTTATAGGCATTCATTTC
66 CTCAGG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
7206035 TT-TAGAAGCCTTATTACTCGCTATAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAACT
130 TTCGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA--
* * * *
7206099 TTTTTTA-ATTTTTTGGTTAAAATAGATTATAATTGAACGTTT-GCCTCGAGAAACGTGAAGTGA
192 TTTTTTACA-TTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGA
** * * * * * *
7206162 AAATCATCCATTGAGAAGAAAAGTCCATTTGTAGTAACCCATGCCTTTGAAAGCCTTAGTT-CTC
256 AAGCCATCCATTGATAAGAAAAGT-TATTTATAGTCACTCATGCCTTCGAAAGCCTTA-TTACTC
* * *
7206226 ACTATGAATGGTTTTATAACCT
319 ACTTTAAATGGTTTTATAATCT
*
7206248 CATAATTGATTTTAAGTTGCAGTTTTTTT
1 CATAATTGATTTTAAGTTG-AATTTTTTT
7206277 TTTTTTTTTT
Statistics
Matches: 4562, Mismatches: 757, Indels: 333
0.81 0.13 0.06
Matches are distributed among these distances:
331 121 0.03
332 83 0.02
333 289 0.06
334 63 0.01
335 7 0.00
336 52 0.01
337 101 0.02
338 131 0.03
339 18 0.00
340 270 0.06
341 1093 0.24
342 1042 0.23
343 430 0.09
344 106 0.02
345 64 0.01
346 319 0.07
347 174 0.04
348 186 0.04
349 13 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (340 bp):
CATAATTGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
CTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT
TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAGCCTTGAGAAACGTGAAGCGAAAGCC
ATCCATTGATAAGAAAAGTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAA
ATGGTTTTATAATCT
Found at i:7206276 original size:172 final size:171
Alignment explanation
Indices: 7204736--7206276 Score: 1656
Period size: 172 Copynumber: 9.0 Consensus size: 171
7204726 TGATTTTAAG
* * * * *
7204736 TTAATTTTTTGATTAAAATAGATTATAATTGAACGTTTGCCTTGGGAAATGTGAAGCGAAAGCCA
1 TTAATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAATGTGAAGCGAAAGCCA
* *
7204801 TCCATTGATAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTATAA
66 TCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTATAA
* *
7204866 ATGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTTGT
131 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * *
7204907 TTACATTTTTTAGTTAAAACATATTATAATTGAATGTTTACCATGAGAAATGTGAAGCGAAAGCC
1 TTA-ATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAATGTGAAGCGAAAGCC
* * * * * * *
7204972 ATTCATTAAGAAGAGAAGTTCATTTAGAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTA
65 ATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTATA
** * *
7205037 AATGGTTTTATAAT-TCATAAACGATTTTGAGTTGAA-TTTC
130 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* ** *
7205077 TT-ATATTTTTAGTTAAAACAGATTATAATTGAATGTTTACCTTG-GAAAACATGATGC-AAATG
1 TTAAT-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAG-AAATGTGAAGCGAAA-G
* ** ** * * *
7205139 TCATATATTGATAAGAGTAGTCCATTTATAAG-CGCTCATGCCTTTGAAAGCCTTATTACTCACT
63 CCATCCATTGATAAGAAAAGTCCATTTAT-AGTCACTCATGCCTTCGAAAGCCTTATTACTCGCT
*
7205203 ATAAATGGTTTTATAATCTCATAATTGATTTTAAATTGAATTTTT
127 ATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * * * * * *
7205248 TCAATTTTTTGGTTAAAA-TGTATTATAATTGAACGTTTGCCTTGGGAAATGTGAAGCAAAAGTC
1 TTAATTTTTTGGTTAAAACAG-ATTATAATTGAATGTTTACCTTGAGAAATGTGAAGCGAAAGCC
* * * * *
7205312 ATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTGATTACTCACTATA
65 ATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTATA
* *
7205377 AATGGTTTTATAATCTTATAATTGATTTTAAGTTAAATTTTT
130 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * * *
7205419 TTACATTTTTTAGTTAAAACAGATTATAAGTGAATGTTTACCATGAGAAATGTGAAGCGGAAGCC
1 TTA-ATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAATGTGAAGCGAAAGCC
* * * * * * * * * *
7205484 ATTCATTAAGAAGAAAAGTTCATTTAGAGTCACTAATGTCTTCAAAAACCTTATTACTCGCTTTA
65 ATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTATA
** * *
7205549 AATGGTTTTATAGCCTCATAATTGATTTGAAGTTTAATTTTT
130 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * * *
7205591 TTACA-TTTTTGGTTAAAACATATTATAATT-AATGTTTACGTT-AGGAAACGTGAGGCGAAAGC
1 TTA-ATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGA-GAAATGTGAAGCGAAAGC
* ** * * * * *
7205653 CATCCACTGATAAGAAAAGTTTATTTAAAGTCACTTATGCCTTCGAAAGCCTTATTAGTTGCTTT
64 CATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTAT
* *
7205718 AAATGGTTTTATAATCTCATAATTGCTTTAAAGTTGAATTTTT
129 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * * * *
7205761 GT-ATATTTTTGGTTAAAACATATTATAATTGAATATTTACCTTGAGAAATGT-ATAGCAAAAGG
1 TTAAT-TTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAATGTGA-AGCGAAAGC
* * * * * * * *
7205824 CATCCATTGAAAAGAAAAGTCTATTTATAGTCACCCATGGCATCAAAAGCCTTATTACTTGCTTT
64 CATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTAT
* * * * *
7205889 AAATGGTTTGATAACCTTATAATTGATTTTAAGTTCAATTTCT
129 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
* * ** * *
7205932 TT-CTTTTTTGGTTAAAACATATTATAATTGAATGTTTGTCTTG-GAAAATGTGAAACGCAAGCC
1 TTAATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAG-AAATGTGAAGCGAAAGCC
* * * ** *
7205995 ATCCATCGATAAGAAAAGTCCATTTATAGGCATTCATTTCTT-TAGAAGCCTTATTACTCGCTAT
65 ATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTACTCGCTAT
*
7206059 AAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAACTTTTT
129 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTT
* * * * * * **
7206103 TTAATTTTTTGGTTAAAATAGATTATAATTGAACGTTTGCCTCGAGAAACGTGAAGTGAAAATCA
1 TTAATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAATGTGAAGCGAAAGCCA
* * * * * * *
7206168 TCCATTGAGAAGAAAAGTCCATTTGTAGTAACCCATGCCTTTGAAAGCCTTAGTT-CTCACTATG
66 TCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTA-TTACTCGCTATA
* *
7206232 AATGGTTTTATAACCTCATAATTGATTTTAAGTTGCAGTTTTT
130 AATGGTTTTATAATCTCATAATTGATTTTAAGTTG-AATTTTT
7206275 TT
1 TT
7206277 TTTTTTTTTT
Statistics
Matches: 1144, Mismatches: 197, Indels: 57
0.82 0.14 0.04
Matches are distributed among these distances:
168 7 0.01
169 115 0.10
170 301 0.26
171 306 0.27
172 409 0.36
173 6 0.01
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.39
Consensus pattern (171 bp):
TTAATTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAATGTGAAGCGAAAGCCA
TCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTATAA
ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
Found at i:7207010 original size:172 final size:172
Alignment explanation
Indices: 7206435--7207425 Score: 902
Period size: 172 Copynumber: 5.8 Consensus size: 172
7206425 TTTTTTTTTT
* * *
7206435 TTTTTTGGTTAAAACAGATTATAATTAAATGTTTACCTTAGGAAATGTGAAGCGAAAG-CTATCC
1 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGTC-ATCC
* *** ** * * *
7206499 ATTGACACGAAAAGTCCATTCGTAGTCACTCATGCCACCGAAACCCTTACTACTTGCTTTAAATG
65 ATTGACAAGAAAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
* * *
7206564 GTTTTATAATCTCATAATTGATTTTAAGTTGAGTTTTTTTACA
130 GTTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTTCACA
* * * * * **
7206607 TTTTTTAGTCAAAACAGATTGTAATTGAAT-TTTACCTCGGGAAACGAGTGGCGAAAG-CTATCC
1 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGTC-ATCC
* * *
7206670 ATT-AGTAAGAAAAGGT-TATTTAAAGTCACTCATGCCTTTGAAAGCC---TTA------TTAAA
65 ATTGA-CAAGAAAA-GTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
* *
7206724 TGGTTTTATAATCTCATAATTGCTTTTGA-TTGGAATGTTTTTC-CA
128 TGGTTTTATAATCTCATAATTGATTTTAAGTT-GAATG-TTTTCACA
* * * * * * **
7206769 --TTTCGGTTAAAACAGATTATAATTGAATGTTGACCTC-GAGAAACATGATGCGGATGTCATGT
1 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAG-GAAACGTGAAGCGAAAGTCATCC
* *
7206831 ATTGACAAGAGAAGTCCATTTATAAG-CACTCATGCCTTCGAAAGCCTTATTACTCGCTATAAAT
65 ATTGACAAGAAAAGTCCATTTA-AAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
*
7206895 AGTTTTATAATCTCATAATTGATTTTAAGTTGAAGTGTTTTCA-A
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TGTTTTCACA
* * * * * * *
7206939 TTTTTTGGTTAAAAGAGAGTATAATTGAACGTTTGCCTCATGAAATGTGAAGCGAAAGTCATCTA
1 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGTCATCCA
** * * * * *
7207004 TTGACAAGAAAAGTCCATTTGTAGTCGCTCATTCCTTTGAAAGCCTTATTACTTGCTATAAATGG
66 TTGACAAGAAAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
* * *
7207069 TTTTATAATCTCATAATTGATTTCAAGTTGAATTTTTTTACA
131 TTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTTCACA
* * * * * * * *
7207111 GTTTTTAGTTAAAACAGATTATAATTGAATGTTTACCACAAGAAATGTGAAGTGGAA-TCCATTC
1 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGT-CATCC
* * * * * *
7207175 ATTAAGC-ATAAAAGTTCATTTAGAGTCACTCATGCCTTTGAAAACCTTATTACTCGCTTTAAAT
65 ATTGA-CAAGAAAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAT
** * *
7207239 GGTTTTATAGCCTCACAATTGATTTTAAGTTCAATGTTTGT-ACA
129 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATGTTT-TCACA
* * **
7207283 -TTTTTGGTTAAAACAGATTATAATT-AATGTTTACCTCGGGAAACGTGAGGCGAAAACCATCCA
1 TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGTCATCCA
* ** * ** * *
7207346 TTGATAAGAGAAA-TTTATTTAAAGTCACTTATAACTTCGAAAGCCTTATTAGTCACTTTAAATG
66 TTGACAAGA-AAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
*
7207410 ATTTTATAATCTCATA
130 GTTTTATAATCTCATA
7207426 TGTAAAACCT
Statistics
Matches: 661, Mismatches: 125, Indels: 68
0.77 0.15 0.08
Matches are distributed among these distances:
160 27 0.04
161 55 0.08
162 42 0.06
163 4 0.01
164 3 0.00
168 2 0.00
170 127 0.19
171 98 0.15
172 301 0.46
173 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (172 bp):
TTTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGTCATCCA
TTGACAAGAAAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG
TTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTTCACA
Found at i:7210783 original size:172 final size:171
Alignment explanation
Indices: 7210294--7211004 Score: 829
Period size: 172 Copynumber: 4.1 Consensus size: 171
7210284 GGTCGTGACA
* * * ** * *
7210294 TCATAATTGCTTTAAAGTTGAATTTTTGTATATTTTTGGTTAAAACAAATTATAATTGAATGTTT
1 TCATAATTGATTTTAAGTTGAATTTTTTTCCATTTTTGGTTAAAATAGATTATAATTGAATGTTT
* * * * * * *
7210359 GCATTGGGAAACGTGAAGC-AAAGGCCA-ACGATTGACAAGAAAAGTCCATTTATAGTCACTCAT
66 ACCTCGAGAAACATGAAGCGAAA-GTCATCCG-TTGACAAGAAAAGTCCATTTATAGTCACTCAT
* *
7210422 GCCTTCGAAAGCCTTATTACTCGCTATAAATGGTTTTATCATC
129 GCCTTCAAAAGCCTTATTACTCGCTATAAATGGTTTTATAATC
*
7210465 TCATAATTGATTTTAAGTTGAATTCTTTTTTCATTTTTGGTTAAAATAGATTATAATT-AATGTT
1 TCATAATTGATTTTAAGTTGAATT-TTTTTCCATTTTTGGTTAAAATAGATTATAATTGAATGTT
** * * *
7210529 TACCTCGAGAAACATGAAGCGAAAGTTGTACGTTGATAAGAAAAGTTCATTTATAGTCACTCATG
65 TACCTCGAGAAACATGAAGCGAAAGTCATCCGTTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
7210594 CCTTTAAAAGCCTTATTAGTCGCTTTAAATGGTTTTATAATC
130 CCTTCAAAAGCCTTATTACTCGCTATAAATGGTTTTATAATC
* * * *
7210636 TCATAATT-ACTTTTGAGTGGAATTTTGTTCCATTTTTGGTTAAAATAGATTATGATTGAAATGT
1 TCATAATTGA-TTTTAAGTTGAATTTTTTTCCATTTTTGGTTAAAATAGATTATAATTG-AATGT
* * * * * * *
7210700 GTGCCTCAAGAAACGTGAAGCGCAAA-TCATCCGTTGATAAGAAAAGTCCATTTATAGGCATTCA
64 TTACCTCGAGAAACATGAAGCG-AAAGTCATCCGTTGACAAGAAAAGTCCATTTATAGTCACTCA
* *
7210764 TGCCCTCAAAAGTCTTATTACTCGCTATAAATGGTTTTATAATC
128 TGCCTTCAAAAGCCTTATTACTCGCTATAAATGGTTTTATAATC
* * * *
7210808 TCATAATTGATTTTGAGTTGAATTTTTTTCAATTTTTTGATTAAAATAGATTACAATTGAATGTT
1 TCATAATTGATTTTAAGTTGAATTTTTTTCCA-TTTTTGGTTAAAATAGATTATAATTGAATGTT
* * * * * * * *
7210873 TACCTCGGGAAACATGAAGCAAAAGTCATCCATTGACAATAAAAGTTCATTTGTAGTCACCCATA
65 TACCTCGAGAAACATGAAGCGAAAGTCATCCGTTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
7210938 CCTTCGAAAGCCTTATTACTCGATTTAAATTGTTTTATAATG
130 CCTTCAAAAGCCTTATTACTCGCTATAAATGGTTTTATAATC
7210980 TCATAATTGATTTTAAGTTGAATTT
1 TCATAATTGATTTTAAGTTGAATTT
7211005 GTAAAACCCG
Statistics
Matches: 459, Mismatches: 71, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
170 31 0.07
171 135 0.29
172 266 0.58
173 27 0.06
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (171 bp):
TCATAATTGATTTTAAGTTGAATTTTTTTCCATTTTTGGTTAAAATAGATTATAATTGAATGTTT
ACCTCGAGAAACATGAAGCGAAAGTCATCCGTTGACAAGAAAAGTCCATTTATAGTCACTCATGC
CTTCAAAAGCCTTATTACTCGCTATAAATGGTTTTATAATC
Found at i:7214143 original size:172 final size:172
Alignment explanation
Indices: 7213841--7215789 Score: 2017
Period size: 172 Copynumber: 11.4 Consensus size: 172
7213831 TTTGCATTTG
* ** *
7213841 TGGTTAAAACAGATTATGATTGAATGTTTAG-CTTGGGAAACGTGAAGTC-AAAGCCATCCATTG
1 TGGTTAAAACAGATTATAATTGAATGTTT-GCCTCAGGAAACATGAAG-CGAAAGCCATCCATTG
* * * * **
7213904 AGAAGAAAAGTTCATTTAT-GATCACTCATCCCTTTGAAAGCCTTATTACTCTTTTTAAATGGTT
64 ACAAGAAAAGTCCATTTATAG-TCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* *
7213968 TTATAATCTCGTAATTGAATTTAAGTTGAAATTTTTTACATTTTT
128 TTATAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATTTTT
* * * * * * *
7214013 TAGTTAAAATAGATTATAATTTACTATTTGCCTCAGGAAACATGAAGTGAAAGCCATCCATTAAC
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
** * * * * *
7214078 ACTAAAAGTCCATTTCTAGTCACCCATACCTTCGAAAGCCTTATTACTCGCTATAAATTGTTTTA
66 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
7214143 TAATCTCATAATTGATTTTAAGTT-AAATTTCTTTACATTTTT
131 TAATCTCATAATTGATTTTAAGTTGAAATTT-TTTACATTTTT
* * ** * *
7214185 TAGTTAAAATAGATTATAATTGAATGTTTGCCTC-GAGAAATGTTAAGCAAAAGCCATCCATTGA
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAG-GAAACATGAAGCGAAAGCCATCCATTGA
** * *
7214249 CACA-AAAAACCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTATAAATGGTTT
65 CA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTT
* * **
7214313 TATAGTCTCATAATTAATTTTAAGTTG-AATTTCTTTGTA-TTTT
129 TATAATCTCATAATTGATTTTAAGTTGAAATTT-TTTACATTTTT
* ** * *
7214356 TGGTTAAAACAGATTATAATTGAATGGTTAG-CTTGGGAAACGTGAAGTGAAAGCCATCCATTGA
1 TGGTTAAAACAGATTATAATTGAAT-GTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGA
* * * *
7214420 GAAGAAAAGTCCATTTATAGTCACTCATCCCTTCGAAAACCTTATTACTCTCTTTAAATGGTTTT
65 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTT
* *
7214485 ATAATCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTT
130 ATAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATTTTT
* * *
7214528 TAGTTAAAACATATTATAATTGACTGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
* * * *
7214593 ATGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTTAAATGGTTTTA
66 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * ***
7214658 TAATCTCATAATTGATTTTAAGATGAATTTTTTTTTGTTTTT
131 TAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATTTTT
* * * **
7214700 T-GTTAAAACAGATTATAATTGAATGTTTACCTCAAGAAGCATGAAGCGAAAGTTATCCATTGAC
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
* * * ** *
7214764 GAGAAAAGTCCATTTATAGGT-AGTCATGGCTTCGAAA-CGCTTATCGCTCG-TTACAAATGGTT
66 AAGAAAAGTCCATTTATA-GTCACTCATGCCTTCGAAAGC-CTTATTACTCGCTT-TAAATGGTT
* *
7214826 TTATAATCTCATAATTGAATTTAAGTTGAATTTTTTTACA-TTTT
128 TTATAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATTTTT
* * * * *
7214870 TGGTTAAAAAAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAAGCGAAAGGCATCCATTAA
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAG-GAAACATGAAGCGAAAGCCATCCATTGA
* * *
7214934 TAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTT
65 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTT
* * *
7214999 ATAATCTCGTAATTCATTTTAAGTTGAATTTTTTTACA-TTTT
130 ATAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATTTTT
* * * * * **
7215041 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGAAAATATGAAGCCAAAGTCATCCATTGGT
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
* * * * * * **
7215106 AAGAAAAGTCCATTTATAGGT-AGTCATGGCTTC-AAAACCTTTATTACTCACTATCAATTATTT
66 AAGAAAAGTCCATTTATA-GTCACTCATGCCTTCGAAAGCC-TTATTACTCGCTTTAAATGGTTT
* *
7215169 TATAATCTTATAATTGATTTTAAGTTG-AATTTCTTTGCATTTTT
129 TATAATCTCATAATTGATTTTAAGTTGAAATTT-TTTACATTTTT
* * * * *
7215213 TGGTTAAAATAGATTATAATTGAATGTTTGCCT-TGAGAAACGTCAAGCAAAAGCCATCCATTGA
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAG-GAAACATGAAGCGAAAGCCATCCATTGA
* * * * * * * * *
7215277 TATGAAAAATCCATTTGTAGTCACCCATGTCTTCAAAAACCTTATTACTTGCTTTAAATGGTTTT
65 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTT
* * * * **
7215342 AAAATCTCGTAAATGTTTTTAAGTTG-AATTTTTTTTATGTTTT
130 ATAATCTCATAATTGATTTTAAGTTGAAATTTTTTACAT-TTTT
* * * * *
7215385 TGGTTAAAACAGATTACAATTGAATGTTTTCCTTAAGAAACATGAAGCGAAAGCCATCCATTGAT
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
* * * * * * *
7215450 ACGAAAAGTCCATTTGTAGTTACTCATGGCTT-TAAAGACTTA-TACTTGCTTTAAATGGTTTTA
66 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * *
7215513 TAATCTCACAATTGATTTTAAGATG-AATTTTTT-TATGTTTT
131 TAATCTCATAATTGATTTTAAGTTGAAATTTTTTACAT-TTTT
* * * * *
7215554 TGGTTAAAACAAATTATAATTGAATGTTTACGTGAGGAAACATGAAGCGAAAGTCATCCATTGAC
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
* * * * * * *
7215619 AAGAAAAGTCCATTTATAGGCAGTCATGGCTTTGAAACCCTTATTACTCACTATAAATGGTTTTA
66 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * *
7215684 T-A-GTC----TT-A---TAATTTG-AATTTCTTTACATTGTT
131 TAATCTCATAATTGATTTTAAGTTGAAATTT-TTTACATTTTT
* * ** * * *
7215716 TAGTTAAAATAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGCAAAAGCCATCTATTGAC
1 TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
*
7215781 ATGAAAAGT
66 AAGAAAAGT
7215790 GTCAAGCTTG
Statistics
Matches: 1504, Mismatches: 238, Indels: 80
0.83 0.13 0.04
Matches are distributed among these distances:
161 10 0.01
162 68 0.05
163 2 0.00
164 1 0.00
165 2 0.00
169 94 0.06
170 76 0.05
171 586 0.39
172 658 0.44
173 7 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (172 bp):
TGGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCCATTGAC
AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
TAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATTTTT
Found at i:7214488 original size:343 final size:341
Alignment explanation
Indices: 7213824--7215789 Score: 2029
Period size: 343 Copynumber: 5.8 Consensus size: 341
7213814 GGTCGTGACA
* * * * *
7213824 GAATTTCTTTGCA-TTTGTGGTTAAAACAGATTATGATTGAATGTTTAG-CTTGGGAAACGTGAA
1 GAATTTCTTTACATTTTTTGGTTAAAACAGATTATAATTGAATGTTT-GCCTCGAGAAACGTGAA
* * * * **
7213887 GTC-AAAGCCATCCATTGAGA-AGAAAAGTTCATTTAT-GATCACTCATCCCTTTGAAAGCCTTA
65 G-CGAAAGCCATCCATTGACATA-AAAAATCCATTTATAG-TCACTCATGCCTTCAAAAGCCTTA
**
7213949 TTACTCTTTTTAAATGGTTTTATAATCTCGTAATTGAA-TTTAAGTTGAAATTTTTTACATTTTT
127 TTACTCGCTTTAAATGGTTTTATAATCTCGTAATT-AATTTTAAGTTG-AATTTTTTACA-TTTT
* * * * * * * * *
7214013 TAGTTAAAATAGATTATAATTTACTATTTGCCTCAGGAAACATGAAGTGAAAGCCATCCATTAAC
189 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGAG
** * * ** * * * *
7214078 ACTAAAAGTCCATTTCTAGTCACCCATACCTTCGAAAGCCTTATTACTCGCTATAAATTGTTTTA
254 AAGAAAAGTCCATTTATAGT-ACTCATGGCTTCGAAAACCTTATTACTCTCTTTAAATGGTTTTA
7214143 TAATCTCATAATTGATTTTAAGTT
318 TAATCTCATAATTGATTTTAAGTT
* * * * *
7214167 AAATTTCTTTACATTTTTTAGTTAAAATAGATTATAATTGAATGTTTGCCTCGAGAAATGTTAAG
1 GAATTTCTTTACATTTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACGTGAAG
* * *
7214232 CAAAAGCCATCCATTGACACAAAAAACCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC
66 CGAAAGCCATCCATTGACATAAAAAATCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC
* * * **
7214297 TCGCTATAAATGGTTTTATAGTCTCATAATTAATTTTAAGTTGAATTTCTTTGTATTTTTGGTTA
131 TCGCTTTAAATGGTTTTATAATCTCGTAATTAATTTTAAGTTGAATTT-TTTACATTTTTGGTTA
* * ** * *
7214362 AAACAGATTATAATTGAATGGTTAGCTTGGGAAACGTGAAGTGAAAGCCATCCATTGAGAAGAAA
195 AAACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGAGAAGAAA
** *
7214427 AGTCCATTTATAGTCACTCATCCCTTCGAAAACCTTATTACTCTCTTTAAATGGTTTTATAATCC
260 AGTCCATTTATAGT-ACTCATGGCTTCGAAAACCTTATTACTCTCTTTAAATGGTTTTATAATCT
7214492 CATAATTGATTTTAAGTT
324 CATAATTGATTTTAAGTT
* * * * *
7214510 GAATTTTTTTACATTTTTTAGTTAAAACATATTATAATTGACTGTTTGCCTC-AGGAAACATGAA
1 GAATTTCTTTACATTTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGA-GAAACGTGAA
* * * ** *
7214574 GCGAAAGCCATCCATTGACATGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGACTTATTA
65 GCGAAAGCCATCCATTGACATAAAAAATCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA
* * * *** *
7214639 CTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGATGAATTTTTTTTTGTTTTTTGTT
130 CTCGCTTTAAATGGTTTTATAATCTCGTAATTAATTTTAAGTTGAA-TTTTTTACATTTTTGGTT
* * **
7214704 AAAACAGATTATAATTGAATGTTTACCTCAAGAAGCATGAAGCGAAAGTTATCCATTGACG-AGA
194 AAAACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGA-GAAGA
* * *
7214768 AAAGTCCATTTATAGGTAGTCATGGCTTCG-AAACGCTTA-T-CGCTCGTTACAAATGGTTTTAT
258 AAAGTCCATTTATA-GTACTCATGGCTTCGAAAAC-CTTATTACTCTC-TT-TAAATGGTTTTAT
*
7214830 AATCTCATAATTGAATTTAAGTT
319 AATCTCATAATTGATTTTAAGTT
* * * *
7214853 GAATTTTTTTACA-TTTTTGGTTAAAAAAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAG
1 GAATTTCTTTACATTTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACGTGAAG
*
7214917 CGAAAGGCATCCATT-A-ATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATT
66 CGAAAGCCATCCATTGACATAA-AAAA-TCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATT
* *
7214980 ACTCTCTTTAAATGGTTTTATAATCTCGTAATTCATTTTAAGTTGAATTTTTTTACATTTTTGGT
129 ACTCGCTTTAAATGGTTTTATAATCTCGTAATTAATTTTAAGTTGAA-TTTTTTACATTTTTGGT
* * * *
7215045 TAAAACAGATTATAATTGAATGTTTACCTCAGAAAATATGAAGCCAAAGTCATCCATTG-GTAAG
193 TAAAACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGAG-AAG
* * * * **
7215109 AAAAGTCCATTTATAGGTAGTCATGGCTTC-AAAACCTTTATTACTCACTATCAATTATTTTATA
257 AAAAGTCCATTTATA-GTACTCATGGCTTCGAAAACC-TTATTACTCTCTTTAAATGGTTTTATA
*
7215173 ATCTTATAATTGATTTTAAGTT
320 ATCTCATAATTGATTTTAAGTT
* * * *
7215195 GAATTTCTTTGCATTTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAACGTCAAG
1 GAATTTCTTTACATTTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACGTGAAG
* * * * * * *
7215260 CAAAAGCCATCCATTGATATGAAAAATCCATTTGTAGTCACCCATGTCTTCAAAAACCTTATTAC
66 CGAAAGCCATCCATTGACATAAAAAATCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC
* * * ** **
7215325 TTGCTTTAAATGGTTTTAAAATCTCGTAAATGTTTTTAAGTTGAATTTTTTTTATGTTTTTGGTT
131 TCGCTTTAAATGGTTTTATAATCTCGTAATTAATTTTAAGTTGAA--TTTTTTACATTTTTGGTT
* * * * * *
7215390 AAAACAGATTACAATTGAATGTTTTCCTTAAGAAACATGAAGCGAAAGCCATCCATTGATACGAA
194 AAAACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGAGAAGAA
* *
7215455 AAGTCCATTTGTAGTTACTCATGGCTT-TAAAGA-CTTA-TACT-TGCTTTAAATGGTTTTATAA
259 AAGTCCATTTATAG-TACTCATGGCTTCGAAA-ACCTTATTACTCT-CTTTAAATGGTTTTATAA
* *
7215516 TCTCACAATTGATTTTAAGAT
321 TCTCATAATTGATTTTAAGTT
* * * * *
7215537 GAATTT-TTT-TATGTTTTTGGTTAAAACAAATTATAATTGAATGTTTACGT-GAGGAAACATGA
1 GAATTTCTTTACAT-TTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGA-GAAACGTGA
* * * * * ** *
7215599 AGCGAAAGTCATCCATTGACA-AGAAAAGTCCATTTATAGGCAGTCATGGCTTTGAAACCCTTAT
64 AGCGAAAGCCATCCATTGACATA-AAAAATCCATTTATAGTCACTCATGCCTTCAAAAGCCTTAT
* * * *
7215663 TACTCACTATAAATGGTTTTATAGTCT--T-A-TAA---T---TTGAATTTCTTTACATTGTTTA
128 TACTCGCTTTAAATGGTTTTATAATCTCGTAATTAATTTTAAGTTGAATTT-TTTACATT-TTTG
* * ** * * * * *
7215718 GTTAAAATAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGCAAAAGCCATCTATTGACAT
191 GTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGAGAA
7215783 GAAAAGT
256 GAAAAGT
7215790 GTCAAGCTTG
Statistics
Matches: 1380, Mismatches: 206, Indels: 86
0.83 0.12 0.05
Matches are distributed among these distances:
329 3 0.00
330 6 0.00
331 70 0.05
334 1 0.00
337 1 0.00
338 1 0.00
339 1 0.00
340 8 0.01
341 124 0.09
342 329 0.24
343 586 0.42
344 244 0.18
345 6 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (341 bp):
GAATTTCTTTACATTTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACGTGAAG
CGAAAGCCATCCATTGACATAAAAAATCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC
TCGCTTTAAATGGTTTTATAATCTCGTAATTAATTTTAAGTTGAATTTTTTACATTTTTGGTTAA
AACAGATTATAATTGAATGTTTACCTCAGGAAACATGAAGCGAAAGCCATCCATTGAGAAGAAAA
GTCCATTTATAGTACTCATGGCTTCGAAAACCTTATTACTCTCTTTAAATGGTTTTATAATCTCA
TAATTGATTTTAAGTT
Found at i:7216487 original size:22 final size:21
Alignment explanation
Indices: 7216448--7216488 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7216438 CCTAGATGGA
**
7216448 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGAAAAAAGTGTG
7216469 AAAATTCAAGAAAACAAGTG
1 AAAATTCAAGAAAA-AAGTG
7216489 ACAAAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.07, G:0.22, T:0.17
Consensus pattern (21 bp):
AAAATTCAAGAAAAAAGTGTG
Found at i:7220834 original size:171 final size:171
Alignment explanation
Indices: 7220267--7220885 Score: 701
Period size: 171 Copynumber: 3.6 Consensus size: 171
7220257 GGTCATGACA
* * * ** *
7220267 AAAAG-TCTATTTGTAGTCACTTATGCCTTTAAAAGCCTTATTACTCTCTTTAAATAGTTTTATA
1 AAAAGTTC-ATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATA
* * * ** *
7220331 ATCTCCTAAATGTTTTTAAGTTGAATTTTTTTATGTTTTTGGTTAAAACATATTATAATTGAATG
65 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACATATTTTAATTGAATG
* ** * * **
7220396 TTTACCTC-AGGAAACATGATTCGAATGTCATGTATTGACAAG
130 TTTACCTCGA-GAAACTTGAAGCGAAAGCCATCCATTGACAAG
* * * * *
7220438 AAAAGTCCATTTATAGGCACTCATGCCTTCGAAAGCCTTATTGCTCGCTTTAAATGGTTTTATAA
1 AAAAGTTCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAA
* *
7220503 TCTCATAATTGATTTTAAGTTGAATTTTTTTATAATTTTTCAGTTAAAACGA-ATTTTAATTGAA
66 TCTCATAATTGATTTTAAGTTGAATTTTTTTA-CATTTTT-GGTTAAAAC-ATATTTTAATTGAA
* * * *
7220567 TGTTTGCCTCGAGAAA-TGTGAAGTGAAAGCCATCCATTAAGAAG
128 TGTTTACCTCGAGAAACT-TGAAGCGAAAGCCATCCATTGACAAG
* *
7220611 AAAAGTTCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTTGCTTTAAATAGTTTTATAA
1 AAAAGTTCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAA
* * *
7220676 CCACATAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGGTTAAAACATATTTTAATTG-ATG
66 TCTCATAATTGATTTTAAGTTGAA-TTTTTTTACATTTTTGGTTAAAACATATTTTAATTGAATG
* * * * *
7220740 TTTACCTCGAAAAACTTGAGGCAAAACCCATCCATTGATAAG
130 TTTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAG
* * * * *
7220782 AAAAGTTTATTTAAATTCACTCATACCTTCGAAAGCCTTATTAGTCGCTTTAAAT-GATTTTTTA
1 AAAAGTTCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAATAG-TTTTATA
* *
7220846 ATCTCATAATTGCTTTTAAGTTGAATTTTTATACATTTTT
65 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTT
7220886 NNNNNNNNNN
Statistics
Matches: 379, Mismatches: 59, Indels: 21
0.83 0.13 0.05
Matches are distributed among these distances:
170 15 0.04
171 195 0.51
172 25 0.07
173 134 0.35
174 10 0.03
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (171 bp):
AAAAGTTCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAA
TCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACATATTTTAATTGAATGT
TTACCTCGAGAAACTTGAAGCGAAAGCCATCCATTGACAAG
Found at i:7225335 original size:171 final size:170
Alignment explanation
Indices: 7225038--7226207 Score: 1243
Period size: 171 Copynumber: 6.8 Consensus size: 170
7225028 TTTTACATTG
* * ** ** * * ***
7225038 AAACATATTATAATTGAATGTTTGCCTTGGGAAACAAGAGGTGAAAGCCATCCATTGGGAAGAAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
* * * * * *
7225103 AGTTTATTTAAAGTCACTAATGTCTTCGAAAGCCTTCTTACTCGCTATAAATGGTTTTATAATCT
66 AGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
*
7225168 CATAATTGATTTTAAGTTGAATGTTTTTACCTTTTTGGTTA
131 CATAATTGATTTTAAGTTGAAT-TTTTTACATTTTTGGTTA
* * * * * * * *
7225209 AAATAGATTATAATTGCACGTTTACCTTAAGAAATGTGAAGCGAAAGCCATCCAATAAGAAGAAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
* * * *
7225274 AGTTTATTTATAGTCACTCTTGCCTTCAAAAGCCTTATTACTCACTTTGAATAAG-TTTATAATC
66 AGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAAT-GGTTTTATAATC
* *
7225338 ACATAATTGATTTTGAGTTGAATGTTTTTACATTTTTTGGTTA
130 TCATAATTGATTTTAAGTTGAAT-TTTTTACA-TTTTTGGTTA
* * * * * *
7225381 AAAAAGATTATAATTGAATGGTTGCCTTAGGAAACGTGAAGCGAAAGCCATCCATTGACAGGAAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
** * * * * *
7225446 AGTCCACTTGTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTGAATGGTTTTATAATCT
66 AGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* ** * * *
7225511 CATAAATGATTGAAAGTTGTATTTTTTTTCATTTTTAGTTA
131 CATAATTGATTTTAAGTTG-AATTTTTTACATTTTTGGTTA
* * ** * * * * *
7225552 AAACAGATTATAATTGAATGTTTTCTTTGGGAAATGTGAGGCGAAAGTCGTCCATTGACAAGAAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
* * * * *
7225617 AGTTTATTTAAAGTCGCTCATGCCCTT-GAAAGCCATATTACTCACTATAAATGGTTTTAAAATC
66 AGTTTATTTATAGTCACTCATG-CCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * *
7225681 TGATAATAGATTTTAAATTGAATTTTTATACATTTTTGGTTA
130 TCATAATTGATTTTAAGTTGAATTTTT-TACATTTTTGGTTA
* * *
7225723 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCAAAAGCCATCCATTTACAACAAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
* * *
7225788 AGTTTATTTATAG-GACTCATGCCTTCAAAAGCCTTATTACTCACTTTGAATGGTTTTATAATCT
66 AGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* **
7225852 CATAATTGATTTTAAGTTAAATTTGTTTACATTTTTTCATTA
131 CATAATTGATTTTAAGTTGAATTT-TTTACA-TTTTTGGTTA
* * * * *
7225894 AAACATATTATAATTGAATGTTTACATCAGGAAACATGGAGCGAAAGCCATCCACTAACAAGAAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
* ** * * * ** *
7225959 TGTCCATTTGTGGTCACTCATGCTTTCGAAAGCCTTATTACTTGCTATAAATGGTTTTATAATCT
66 AGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* *
7226024 CATAATTGATTTTAAGTTGAATTTTCTTACCTTTTTTGGATA
131 CATAATTGATTTTAAGTTGAATTTT-TTA-CATTTTTGGTTA
* * *
7226066 AAACA-ATTATAATTGAATATTTGCCTCAGGAAACGTGAA-CTGAAAGCCATCCATTAACACGAA
1 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGC-GAAAGCCATCCATTAACAAGAA
*** * ** ** *
7226129 AAGTCCGTTTGTAGTCACTCACACCTTCGAAAGCCTTATTACTTGCTTTAAATGATTTTATAATC
65 AAGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
*
7226194 TCATATTTGATTTT
130 TCATAATTGATTTT
7226208 GTCACGACCC
Statistics
Matches: 835, Mismatches: 151, Indels: 26
0.83 0.15 0.03
Matches are distributed among these distances:
169 4 0.00
170 70 0.08
171 530 0.63
172 228 0.27
173 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (170 bp):
AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCATCCATTAACAAGAAA
AGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
CATAATTGATTTTAAGTTGAATTTTTTACATTTTTGGTTA
Found at i:7225715 original size:343 final size:341
Alignment explanation
Indices: 7225038--7226207 Score: 1303
Period size: 343 Copynumber: 3.4 Consensus size: 341
7225028 TTTTACATTG
* ** ** * * **
7225038 AAACATATTATAATTGAATGTTTGCCTTGGGAAACAAGAGGTGAAAGCCATCCATTGGGAAGAAA
1 AAACAGATTATAATTGAATGTTTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
** * * ** * * * *
7225103 AGTTTATTTAAAGTCACTAATGTCTTCGAAAGCCTTCTTACTCGCTATAAATGGTTTTATAATCT
66 AGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* * * * * *
7225168 CATAATTGATTTTAAGTTGAATGTTTTTACCTTTTTGGTTAAAATAGATTATAATTGCACGTTTA
131 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
* ** * *
7225233 CCTTAAGAAATGTGAAGCGAAAGCCATCCAATAAGAAGAAAAGTTTATTTATAGTCACTCTTGCC
196 CTTTGGGAAATGTG-AGCGAAAGCCATCCAATAACAAGAAAAGTTTATTTATAGTCACTCATGCC
* * * * * *
7225298 TTCAAAAGCCTTATTACTCACTTTGAATAAG-TTTATAATCACATAATTGATTTTGAGTTGAATG
260 TTCGAAAGCCTTATTACTCACTATAAAT-GGTTTTATAATCTCATAATTGATTTTAAGTTGAAT-
7225362 TTTTTACATTTTTTGGTTA
323 TTTTTACATTTTTTGGTTA
* * * *
7225381 AAAAAGATTATAATTGAATGGTTGCCTTAGGAAACGTGAAGCGAAAGCCATCCATTGACAGGAAA
1 AAACAGATTATAATTGAATGTTTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
* * *
7225446 AGTCCACTTGTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTGAATGGTTTTATAATCT
66 AGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* ** * * *
7225511 CATAAATGATTGAAAGTTGTATTTTTTTTCATTTTTAGTTAAAACAGATTATAATTGAATGTTTT
131 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
* * * * * *
7225576 CTTTGGGAAATGTGAGGCGAAAGTCGTCCATTGACAAGAAAAGTTTATTTAAAGTCGCTCATGCC
196 CTTTGGGAAATGTGA-GCGAAAGCCATCCAATAACAAGAAAAGTTTATTTATAGTCACTCATG-C
* * * * *
7225641 CTT-GAAAGCCATATTACTCACTATAAATGGTTTTAAAATCTGATAATAGATTTTAAATTGAATT
259 CTTCGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
7225705 TTTATACA-TTTTTGGTTA
324 TTT-TACATTTTTTGGTTA
* * * *
7225723 AAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCAAAAGCCATCCATTTACAACAAA
1 AAACAGATTATAATTGAATGTTTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
** * * *
7225788 AGTTTATTTATAG-GACTCATGCCTTCAAAAGCCTTATTACTCACTTTGAATGGTTTTATAATCT
66 AGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* * *
7225852 CATAATTGATTTTAAGTTAAATTTGTTTACATTTTTTCA-TTAAAACATATTATAATTGAATGTT
131 CATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTT-AGTTAAAACAGATTATAATTGAATGTT
** * * * ** * *
7225916 TACATCAGGAAACATG-GAGCGAAAGCCATCCACTAACAAGAAATGTCCATTTGTGGTCACTCAT
194 TAC-TTTGGGAA-ATGTGAGCGAAAGCCATCCAATAACAAGAAAAGTTTATTTATAGTCACTCAT
* **
7225980 GCTTTCGAAAGCCTTATTACTTGCTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA
257 GCCTTCGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA
* *
7226045 TTTTCTTACCTTTTTTGGATA
322 TTTT-TTACATTTTTTGGTTA
* * *
7226066 AAACA-ATTATAATTGAATATTTGCCTCAGGAAACGTGAA-CTGAAAGCCATCCATTAACACGAA
1 AAACAGATTATAATTGAATGTTTGCCTCAGGAAACGTGAAGC-GAAAGCCATCCATTGACAAGAA
* * * * ** *
7226129 AAGTCCGTTTGTAGTCACTCACACCTTCGAAAGCCTTATTACTTGCTTTAAATGATTTTATAATC
65 AAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
*
7226194 TCATATTTGATTTT
130 TCATAATTGATTTT
7226208 GTCACGACCC
Statistics
Matches: 690, Mismatches: 124, Indels: 26
0.82 0.15 0.03
Matches are distributed among these distances:
341 77 0.11
342 268 0.39
343 338 0.49
344 7 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (341 bp):
AAACAGATTATAATTGAATGTTTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
AGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
CTTTGGGAAATGTGAGCGAAAGCCATCCAATAACAAGAAAAGTTTATTTATAGTCACTCATGCCT
TCGAAAGCCTTATTACTCACTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT
TTACATTTTTTGGTTA
Found at i:7226132 original size:513 final size:514
Alignment explanation
Indices: 7225038--7226207 Score: 1400
Period size: 513 Copynumber: 2.3 Consensus size: 514
7225028 TTTTACATTG
* ** * **
7225038 AAACATATTATAATTGAATGTTTGCCTTGGGAAACAAGAGGTGAAAGCCATCCATTGGGAAGAAA
1 AAACAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAGCTGAAAGCCATCCATTGACAAGAAA
* * * * *
7225103 AGTTTATTTAAAGTCACTAATGTCTTCGAAAGCCTTCTTACTCGCTATAAATGGTTTTATAATCT
66 AGTTTATTTAAAGTCACTAATGCCTTCGAAAGCCATATTACTCACTATAAATGGTTTTAAAATCT
* * * * *
7225168 CATAATTGATTTTAAGTTGAATGTTTTTACCTTTTTGGTTAAAATAGATTATAATTGCACGTTTA
131 CATAATAGATTTTAAATTGAATGTTTTTACATTTTTGGTTAAAACAGATTATAATTGAACGTTTA
* * * * * *
7225233 CCTTAAGAAATGTGAAGCGAAAGCCATCCAATAAGAAGAAAAGTTTATTTATAGTCACTCTTGCC
196 CCTCAAGAAACGTGAAGCAAAAGCCATCCAATAACAACAAAAGTTTATTTATAGTCACTCATGCC
* *
7225298 TTCAAAAGCCTTATTACTCACTTTGAATAAGTTTATAATCACATAATTGATTTTGAGTTGAATGT
261 TTCAAAAGCCTTATTACTCACTTTGAATAAGTTTATAATCACATAATTGATTTTAAGTTAAATGT
** * * * *
7225363 TTTTACATTTTTTGGTTAAAAAAGATTATAATTGAATGGTTGCCTTAGGAAACGTGAAGCGAAAG
326 TTTTACATTTTTTCATTAAAAAAGATTATAATTGAATGGTTACATCAGGAAACATGAAGCGAAAG
* * * *
7225428 CCATCCATTGACAGGAAAAGTCCACTTGTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTT
391 CCATCCACTAACAAGAAAAGTCCACTTGTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTA
* * ** *
7225493 TGAATGGTTTTATAATCTCATAAATGATTGAAAGTTGTATTTTTTTTCATTTTTAGTTA
456 TAAATGGTTTTATAATCTCATAAATGATTGAAAGTTGAATTTTTTACCATTTTTAGATA
* * * * *
7225552 AAACAGATTATAATTGAATGTTTTCTTTGGGAAATGTGAGGC-GAAAGTCGTCCATTGACAAGAA
1 AAACAGATTATAATTGAATGTTTGCCTTGGGAAACGTGA-GCTGAAAGCCATCCATTGACAAGAA
* *
7225616 AAGTTTATTTAAAGTCGCTCATGCCCTT-GAAAGCCATATTACTCACTATAAATGGTTTTAAAAT
65 AAGTTTATTTAAAGTCACTAATG-CCTTCGAAAGCCATATTACTCACTATAAATGGTTTTAAAAT
* *
7225680 CTGATAATAGATTTTAAATTGAAT-TTTTATACATTTTTGGTTAAAACAGATTATAATTGAATGT
129 CTCATAATAGATTTTAAATTGAATGTTTT-TACATTTTTGGTTAAAACAGATTATAATTGAACGT
* * * *
7225744 TTACCTCAGGAAACGTGAAGCAAAAGCCATCCATTTACAACAAAAGTTTATTTATAG-GACTCAT
193 TTACCTCAAGAAACGTGAAGCAAAAGCCATCCAATAACAACAAAAGTTTATTTATAGTCACTCAT
* *
7225808 GCCTTCAAAAGCCTTATTACTCACTTTGAAT-GGTTTTATAATCTCATAATTGATTTTAAGTTAA
258 GCCTTCAAAAGCCTTATTACTCACTTTGAATAAG-TTTATAATCACATAATTGATTTTAAGTTAA
* * * *
7225872 AT-TTGTTTACATTTTTTCATTAAAACATATTATAATTGAATGTTTACATCAGGAAACATGGAGC
322 ATGTT-TTTACATTTTTTCATTAAAAAAGATTATAATTGAATGGTTACATCAGGAAACATGAAGC
* * * * * *
7225936 GAAAGCCATCCACTAACAAGAAATGTCCATTTGTGGTCACTCATGCTTTCGAAAGCCTTATTACT
386 GAAAGCCATCCACTAACAAGAAAAGTCCACTTGTAGTCACTCATACCTTCAAAAGCCTTATTACT
** * ** * *
7226001 TGCTATAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTCTTACCTTTTTTGGATA
451 CACTATAAATGGTTTTATAATCTCATAAATGATTGAAAGTTGAATTTT-TTACCATTTTTAGATA
* ** * * *
7226066 AAACA-ATTATAATTGAATATTTGCCTCAGGAAACGTGAACTGAAAGCCATCCATTAACACGAAA
1 AAACAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAGCTGAAAGCCATCCATTGACAAGAAA
*** ** * ** * ** * * *
7226130 AGTCCGTTTGTAGTCACTCACACCTTCGAAAGCCTTATTACTTGCTTTAAATGATTTTATAATCT
66 AGTTTATTTAAAGTCACTAATGCCTTCGAAAGCCATATTACTCACTATAAATGGTTTTAAAATCT
* *
7226195 CATATTTGATTTT
131 CATAATAGATTTT
7226208 GTCACGACCC
Statistics
Matches: 549, Mismatches: 99, Indels: 17
0.83 0.15 0.03
Matches are distributed among these distances:
512 8 0.01
513 316 0.58
514 221 0.40
515 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (514 bp):
AAACAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAGCTGAAAGCCATCCATTGACAAGAAA
AGTTTATTTAAAGTCACTAATGCCTTCGAAAGCCATATTACTCACTATAAATGGTTTTAAAATCT
CATAATAGATTTTAAATTGAATGTTTTTACATTTTTGGTTAAAACAGATTATAATTGAACGTTTA
CCTCAAGAAACGTGAAGCAAAAGCCATCCAATAACAACAAAAGTTTATTTATAGTCACTCATGCC
TTCAAAAGCCTTATTACTCACTTTGAATAAGTTTATAATCACATAATTGATTTTAAGTTAAATGT
TTTTACATTTTTTCATTAAAAAAGATTATAATTGAATGGTTACATCAGGAAACATGAAGCGAAAG
CCATCCACTAACAAGAAAAGTCCACTTGTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTA
TAAATGGTTTTATAATCTCATAAATGATTGAAAGTTGAATTTTTTACCATTTTTAGATA
Found at i:7228100 original size:17 final size:17
Alignment explanation
Indices: 7228078--7228110 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7228068 ACCTAGGGTT
7228078 TCTTCT-TTCTTGGTTTC
1 TCTTCTCTTC-TGGTTTC
7228095 TCTTCTCTTCTGGTTT
1 TCTTCTCTTCTGGTTT
7228111 GGCCGACCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.00, C:0.24, G:0.12, T:0.64
Consensus pattern (17 bp):
TCTTCTCTTCTGGTTTC
Found at i:7229406 original size:169 final size:169
Alignment explanation
Indices: 7228948--7229500 Score: 641
Period size: 169 Copynumber: 3.2 Consensus size: 169
7228938 AATTTTACTT
* * * *
7228948 AAAACAGATTATAATTGAATGTTTGCCTT-AGGAAACGGGAAGCGAAA-GCCAAACATTGACACG
1 AAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGC-AAATGCC-ACCATTGACAAG
** * * * **
7229011 AAAAGTTCATTTGTAGTCACTCATGCCTTCAAAAGCCTAATTACTTGCTTTAATATATTTTTATA
63 AAAAGTTCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA-ATGGTTTTATA
7229076 ATCTCATAATTGATTTTAAGTTGAATGTTTTTATATTTTTTG-G
127 ATCTCATAATTGATTTTAAGTTGAAT-TTTTTATATTTTTTGTG
* ** * * *
7229119 CTAAAACGGATTATAATTGAATGTTTGGCTTGAGAAACGTGAAGTGAAAT-CCATCCATTAAGAA
1 --AAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAG-CAAATGCCA-CCATTGACAA
*
7229183 GAAAAGTTCATTTATAA-TCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTAT
62 GAAAAGTTCATTTA-AAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
* * *
7229247 AACCTCATAATTGATTTTAAGTTCAAGTTTTTTACATTTTTTGTG
126 AATCTCATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTTGTG
* * * *
7229292 AAAACAGATTGTAATT-AATGTTTACCTCGGGAAACGTGAAGCAAATGGCACCATTGACAAGAAA
1 AAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCAAATGCCACCATTGACAAGAAA
* * * *
7229356 AGTTTATTTAAAGTCACTTATGCCTTCGAAAGCCTTATTAGTCGCTTTAAATGGTTTTACAATCT
66 AGTTCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
* * * *
7229421 TATAATTGCTTTTAAGTTGAATTTTTGTATATTTTTGGTT
131 CATAATTGATTTTAAGTTGAATTTTT-TATATTTTTTGTG
* *
7229461 AAAATAGATTATAATTGAATGTTTACCTAGAGAAACGTGA
1 AAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGA
7229501 GGCGAAAGCA
Statistics
Matches: 324, Mismatches: 45, Indels: 25
0.82 0.11 0.06
Matches are distributed among these distances:
168 7 0.02
169 114 0.35
170 44 0.14
171 14 0.04
172 47 0.15
173 96 0.30
174 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (169 bp):
AAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCAAATGCCACCATTGACAAGAAA
AGTTCATTTAAAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
CATAATTGATTTTAAGTTGAATTTTTTATATTTTTTGTG
Found at i:7229783 original size:19 final size:20
Alignment explanation
Indices: 7229756--7229801 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7229746 AGGAGACAAG
*
7229756 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
7229775 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
7229794 ATAATATT
1 ATAATATT
7229802 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:7233868 original size:172 final size:170
Alignment explanation
Indices: 7233083--7234562 Score: 1466
Period size: 172 Copynumber: 8.6 Consensus size: 170
7233073 GGTCGTGACA
* ** * * *
7233083 CCATTGATAAGAAAAGTTTATTTAAACTCACTCATGCCTTTGAAAGCCTTATTAGTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTGAAAGCCTTATTACTCAC-TTAAA
* * * * *
7233148 TAGTTTTATAATCTCATAATTGCTTTTAAGTTGAATTTTATTTCCATTTTATA-TTAAAACTGAT
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT-TTTACATTTTTTAGTTAAAACAGAT
* * * *
7233212 TATAATTGAATGTTTACCTTAGGAAACATGAAGTGAAAGTCAT
128 TATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
** * * *
7233255 CCATTGGTAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAACCTTATCACTCGCTCTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-GAAAGCCTTATTACTCACT-TAAA
* * * * * * * * *
7233320 TGGTTTCATAAACTTATAATTAAATTTAAGTTCAA-TTTTTTATA-TTTTTGGTTAAAACAGATA
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAACAGATT
* * *
7233383 ATAATTGAATGTTT-GCTCTAGGAAATGTGAGGCGAAAGCCAT
129 ATAATTGAATGTTTACCTC-AGGAAACGTGAAGCGAAAGCCAT
** * * * *
7233425 CCATTGACAAGAAAAGTTTATTTAAAGTTACTCATGCCTTTGAAAGCCATATTAC-CTCTATAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTGAAAGCCTTATTACTCACT-TAAA
* * * *
7233489 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTGTTTATATTTTTTGGTTAACACAGATT
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAACAGATT
* *
7233554 ATAATTGAATATTTACCTCAGGAAACGTGAAGCG-AAGTCAT
129 ATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
* * * * **
7233595 CCAGTGACAAGAAAAGTCCATTTGTTGTCACTCTTGCCTTTGAAAGCCTTATTACTCGTTATAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTGAAAGCCTTATTACTCACT-TAAA
*
7233660 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAATAGATT
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAACAGATT
*
7233725 ATAATTGAATGTTTGCCTCAGGAAACGTGAAGCGAAAGCCAT
129 ATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
* * * * * **
7233767 CTATTGACACGTAAAGTCCATTTGTAGTCACTTATGGCCTTGAAAGCCTTATTACTTGCTTGAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCTTGAAAGCCTTATTACTCACTT-AAA
*
7233832 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCTTA-TTAAAACAAA
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTT-TTAGTTAAAACAGA
* * ** *
7233896 TTATGATTGAATATTTACCTTGGGAAACGTGATGCGAAAGCCAT
127 TTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
* * * * *
7233940 CCATTGGCCAGAAAAGTCCATTTATAGTCTCTC-TGCCTTCGAAAGCCTTACTACTCAGTCTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-GAAAGCCTTATTACTCACT-TAAA
* * * * *
7234004 TGGTTTTATAATCTCATAATTGATTTTACGTTAAATTTTTTTAC-CTTTTTGGTTAAAACAGACT
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAACAGATT
* * * * * *
7234068 ATAATTGAGTATTTGCCT-TGAGAAACATAAAGCGAAAGCCAT
129 ATAATTGAATGTTTACCTCAG-GAAACGTGAAGCGAAAGCCAT
* * ** * * * *
7234110 CTATGGTGAAGAAAAG-CTCATTTACAGTCACTCACGCCTTTGAAAGCTTTATTACTTACTTTAA
1 CCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCC-TTGAAAGCCTTATTACTCAC-TTAA
* * *
7234174 ATGGTTTTATAATCTTATAATTGATTTTAAGTTGAATTGTTTTT--ATGTTTTTGGTTAAAACAA
63 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTACAT-TTTTTAGTTAAAACAG
** * * * *
7234237 ATTATAATTGAATGTTTACCTTGGGAAACATGACGCGAATGTCAT
126 ATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
** * ** *
7234282 GTATTGACAAGAAAAGTTCATTTGCAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-GAAAGCCTTATTACTCAC-TTAAA
* * * * * *
7234347 TAGTTTTATAATCTTATAAATT-ACTTTAAATTGAATTTTTTTA-A-TTTTCA-TTAAAATTA-A
64 TGGTTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAA-CAGA
* * * * *
7234407 TAATAATTGGATGCTTACCTCTCAAGAAACGTGAAGCGAAAGGCAT
127 TTATAATTGAATGTTTA-C-CTCAGGAAACGTGAAGCGAAAGCCAT
* * * *
7234453 TCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGCCCTATTACTCACTATAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-GAAAGCCTTATTACTCACT-TAAA
* * *
7234518 TGGTTTTATAACCTCATAATTGATTTTAAGTTCAATTTTCTTACA
64 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
7234563 NNNNNNNNNN
Statistics
Matches: 1090, Mismatches: 182, Indels: 72
0.81 0.14 0.05
Matches are distributed among these distances:
169 67 0.06
170 230 0.21
171 324 0.30
172 382 0.35
173 84 0.08
174 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (170 bp):
CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTGAAAGCCTTATTACTCACTTAAATG
GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAGTTAAAACAGATTAT
AATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
Found at i:7234112 original size:343 final size:340
Alignment explanation
Indices: 7233085--7234562 Score: 1564
Period size: 343 Copynumber: 4.3 Consensus size: 340
7233075 TCGTGACACC
* ** * * * * *
7233085 ATTGATAAGAAAAGTTTATTTAAACTCACTCATGCCTTTGAAAGCCTTATTAGTCACTTTAAATA
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTTAC-TTAAATG
* * * **
7233150 GTTTTATAATCTCATAATTGCTTTTAAGTTGAATTTTATTTCCATTTTAT-ATTAAAACTGATTA
65 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT-TTTACATTTTTTGATTAAAACAAATTA
* * **
7233214 TAATTGAATGTTTACCTTAGGAAACATGAAGTGAAAGTCATCCATTGGTAAGAAAAGTCCATTTA
129 TAATTGAATATTTACCTTAGGAAACATGAAGCGAAAGTCATCCATTGACAAGAAAAGTCCATTTA
* * * * * * *
7233279 TAGTCACTCATGCCTTCGAAAACCTTATCACTCGCTCTAAATGGTTTCATAAACTTATAATTAAA
194 TAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTCTAAATGGTTTTATAATCTCATAATTGAT
* * *
7233344 TTTAAGTTCAATTTTTTATATTTTTGGTTAAAACAGATAATAATTGAATGTTTGCTCTAG-GAAA
259 TTTAAGTTGAATTTTTT-TATTTTTGGTTAAAACAGATAATAATTGAATATTTGC-CTTGAGAAA
* * *
7233408 TGTGAGGCGAAAGCCATCC
322 CGTGAAGCGAAAGCCATCT
** * * * *
7233427 ATTGACAAGAAAAGTTTATTTAAAGTTACTCATGCCTTTGAAAGCCATATTACCT-CTATAAATG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTTACT-TAAATG
* * * * *
7233491 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTGTTTATATTTTTTGGTTAACACAGATTAT
65 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTGATTAAAACAAATTAT
* * * *
7233556 AATTGAATATTTACCTCAGGAAACGTGAAGCG-AAGTCATCCAGTGACAAGAAAAGTCCATTTGT
130 AATTGAATATTTACCTTAGGAAACATGAAGCGAAAGTCATCCATTGACAAGAAAAGTCCATTTAT
* * * * *
7233620 TGTCACTCTTGCCTTTGAAAGCCTTATTACTCGTTATAAATGGTTTTATAATCTCATAATTGATT
195 AGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTCTAAATGGTTTTATAATCTCATAATTGATT
* * * * *
7233685 TTAAGTTGAATTTTTTTACATTTTTTAGTTAAAATAGATTATAATTGAATGTTTGCC-TCAGGAA
260 TTAAGTTGAATTTTTTT--A-TTTTTGGTTAAAACAGATAATAATTGAATATTTGCCTTGA-GAA
7233749 ACGTGAAGCGAAAGCCATCT
321 ACGTGAAGCGAAAGCCATCT
* * * * *
7233769 ATTGACACGTAAAGTCCATTTGTAGTCACTTATGGCC-TTGAAAGCCTTATTACTTGCTTGAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCTTTGAAAGCCTTATTACTTACTT-AAAT
*
7233833 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCTTATTAAAACAAATT
64 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTT-TGATTAAAACAAATT
* * * * * * *
7233898 ATGATTGAATATTTACCTTGGGAAACGTGATGCGAAAGCCATCCATTGGCCAGAAAAGTCCATTT
128 ATAATTGAATATTTACCTTAGGAAACATGAAGCGAAAGTCATCCATTGACAAGAAAAGTCCATTT
* *
7233963 ATAGTCTCTC-TGCCTTCGAAAGCCTTACTACTCAG-TCTAAATGGTTTTATAATCTCATAATTG
193 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-GCTCTAAATGGTTTTATAATCTCATAATTG
* * *
7234026 ATTTTACGTTAAATTTTTTTACCTTTTTGGTTAAAACAGACT-ATAATTGAGTATTTGCCTTGAG
257 ATTTTAAGTTGAATTTTTTTA--TTTTTGGTTAAAACAGA-TAATAATTGAATATTTGCCTTGAG
* *
7234090 AAACATAAAGCGAAAGCCATCT
319 AAACGTGAAGCGAAAGCCATCT
* ** * * *
7234112 ATGGTGAAGAAAAG-CTCATTTACAGTCACTCACGCCTTTGAAAGCTTTATTACTTACTTTAAAT
1 ATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTTAC-TTAAAT
* *
7234176 GGTTTTATAATCTTATAATTGATTTTAAGTTGAATTGTTTTT--ATGTTTTTGGTTAAAACAAAT
64 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTACAT-TTTTTGATTAAAACAAAT
* * * * ** *
7234239 TATAATTGAATGTTTACCTTGGGAAACATGACGCGAATGTCATGTATTGACAAGAAAAGTTCATT
127 TATAATTGAATATTTACCTTAGGAAACATGAAGCGAAAGTCATCCATTGACAAGAAAAGTCCATT
** * * * * *
7234304 TGCAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTTATAAATT
192 TATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTCTAAATGGTTTTATAATCTCAT-AATT
* * * ** * * ** * *
7234369 -ACTTTAAATTGAATTTTTTTAATTTTCATTAAAATTA-ATAATAATTGGATGCTTACCTCTCAA
256 GATTTTAAGTTGAATTTTTTTATTTTTGGTTAAAA-CAGATAATAATTGAATATTTGCCT-T-GA
*
7234432 GAAACGTGAAGCGAAAGGCAT-T
318 GAAACGTGAAGCGAAAGCCATCT
* ** * *
7234454 CATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGCCCTATTACTCACTATAAAT
1 -ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTTACT-TAAAT
* * *
7234519 GGTTTTATAACCTCATAATTGATTTTAAGTTCAATTTTCTTACA
64 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA
7234563 NNNNNNNNNN
Statistics
Matches: 952, Mismatches: 151, Indels: 64
0.82 0.13 0.05
Matches are distributed among these distances:
339 1 0.00
340 107 0.11
341 107 0.11
342 231 0.24
343 349 0.37
344 123 0.13
345 34 0.04
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (340 bp):
ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTTACTTAAATGG
TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTGATTAAAACAAATTATA
ATTGAATATTTACCTTAGGAAACATGAAGCGAAAGTCATCCATTGACAAGAAAAGTCCATTTATA
GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTCTAAATGGTTTTATAATCTCATAATTGATTT
TAAGTTGAATTTTTTTATTTTTGGTTAAAACAGATAATAATTGAATATTTGCCTTGAGAAACGTG
AAGCGAAAGCCATCT
Found at i:7236468 original size:2 final size:2
Alignment explanation
Indices: 7236461--7236493 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7236451 ACAGTAAAGA
7236461 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7236494 TGAAACTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7237607 original size:19 final size:19
Alignment explanation
Indices: 7237585--7237627 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7237575 ATCTTTATTG
7237585 ATTCAT-TTAAATGAATCCA
1 ATTCATATTAAATGAAT-CA
*
7237604 ATTCATATTAAATTAATCA
1 ATTCATATTAAATGAATCA
7237623 ATTCA
1 ATTCA
7237628 ATTCCATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.40
Consensus pattern (19 bp):
ATTCATATTAAATGAATCA
Found at i:7239507 original size:22 final size:23
Alignment explanation
Indices: 7239464--7239509 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
7239454 ATATAGAGTT
7239464 AATTGGTCTCAATTTTGATAGTA
1 AATTGGTCTCAATTTTGATAGTA
*
7239487 AATTGG-CTCAGTTCTTG-TAGTA
1 AATTGGTCTCAATT-TTGATAGTA
7239509 A
1 A
7239510 TGTATAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (23 bp):
AATTGGTCTCAATTTTGATAGTA
Found at i:7253298 original size:36 final size:36
Alignment explanation
Indices: 7253236--7253329 Score: 136
Period size: 36 Copynumber: 2.6 Consensus size: 36
7253226 AATCAACTAT
* * *
7253236 CAACTTGCCTTTTCAATAAGATTAGGCTTAACCTT-A
1 CAACATGCCTTTTC-ACAAGATTAGGCATAACCTTCA
7253272 GCAACATGCCTTTTCACAAGATTAGGCATAACCTTCA
1 -CAACATGCCTTTTCACAAGATTAGGCATAACCTTCA
7253309 CAACATGCCTTTTCACAAGAT
1 CAACATGCCTTTTCACAAGAT
7253330 CAAGCGAAAC
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
36 39 0.74
37 14 0.26
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.31
Consensus pattern (36 bp):
CAACATGCCTTTTCACAAGATTAGGCATAACCTTCA
Found at i:7253341 original size:36 final size:36
Alignment explanation
Indices: 7253236--7253343 Score: 112
Period size: 36 Copynumber: 3.0 Consensus size: 36
7253226 AATCAACTAT
* * * * *
7253236 CAACTTGCCTTTTCAATAAGATTAGGCTTAACCTTAG
1 CAACATGCCTTTTC-ACAAGATCAAGCATAACCTTAG
* *
7253273 CAACATGCCTTTTCACAAGATTAGGCATAACCTTCA-
1 CAACATGCCTTTTCACAAGATCAAGCATAACCTT-AG
7253309 CAACATGCCTTTTCACAAGATCAAGCGA-AACCTTA
1 CAACATGCCTTTTCACAAGATCAAGC-ATAACCTTA
7253344 ACCAAAAACA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
35 1 0.02
36 48 0.75
37 15 0.23
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (36 bp):
CAACATGCCTTTTCACAAGATCAAGCATAACCTTAG
Found at i:7263297 original size:22 final size:22
Alignment explanation
Indices: 7263272--7263315 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7263262 TTTAAAACAA
*
7263272 CTTTAAAACTGAAAA-CTCTGAT
1 CTTTAAAA-TCAAAAGCTCTGAT
7263294 CTTTAAAATCAAAAGCTCTGAT
1 CTTTAAAATCAAAAGCTCTGAT
7263316 ACCAATCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTTAAAATCAAAAGCTCTGAT
Found at i:7268934 original size:28 final size:29
Alignment explanation
Indices: 7268876--7268939 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
7268866 GTAAATTTTT
* * *
7268876 AAAAATTACACTTTTGCCCTAATAAAGTG
1 AAAAATTACACTTTTACCCCAATAAACTG
*
7268905 AAAAATTACATTTTTACCCCAA-AAACTG
1 AAAAATTACACTTTTACCCCAATAAACTG
7268933 AAAAATT
1 AAAAATT
7268940 GCCCATAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCAATAAACTG
Found at i:7271334 original size:19 final size:20
Alignment explanation
Indices: 7271310--7271357 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
7271300 TTAGTCTATA
7271310 AAATTGAATTGG-TTAATTT
1 AAATTGAATTGGATTAATTT
* *
7271329 AAATTGAATAGGATTCATTT
1 AAATTGAATTGGATTAATTT
7271349 AAATT-AATT
1 AAATTGAATT
7271358 AATTAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (20 bp):
AAATTGAATTGGATTAATTT
Found at i:7276022 original size:22 final size:21
Alignment explanation
Indices: 7275979--7276023 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7275969 CTTTATGTCA
7275979 TTTTTCTCCAATCTGTAGGTG
1 TTTTTCTCCAATCTGTAGGTG
*
7276000 TTTTCTCTCCTATCATGTA-GTG
1 TTTT-TCTCCAATC-TGTAGGTG
7276022 TT
1 TT
7276024 ACAACATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 13 0.62
23 4 0.19
ACGTcount: A:0.13, C:0.20, G:0.16, T:0.51
Consensus pattern (21 bp):
TTTTTCTCCAATCTGTAGGTG
Found at i:7282628 original size:6 final size:7
Alignment explanation
Indices: 7282611--7282637 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7282601 GTCGCTGCTT
7282611 TTTTTTA
1 TTTTTTA
7282618 TTTTTTA
1 TTTTTTA
7282625 TTTTTTA
1 TTTTTTA
7282632 TTTTTT
1 TTTTTT
7282638 TATGTACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:7282749 original size:2 final size:2
Alignment explanation
Indices: 7282742--7282769 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7282732 AATACAGGTC
7282742 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7282770 GCATGTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7284285 original size:23 final size:23
Alignment explanation
Indices: 7284259--7284549 Score: 116
Period size: 23 Copynumber: 12.7 Consensus size: 23
7284249 AAATGTCATC
*
7284259 GTGGAAATGTGTGACACGGCATG
1 GTGGAAATATGTGACACGGCATG
* * * ***
7284282 GTGGGAATGTATGACATAACATG
1 GTGGAAATATGTGACACGGCATG
* * * **
7284305 GTGGGAATGTGTGACATGATATG
1 GTGGAAATATGTGACACGGCATG
* * *
7284328 GT-GAGAATATGAGACACGACAAG
1 GTGGA-AATATGTGACACGGCATG
** * *
7284351 GTTTAAAGTTTGTGACACGCCATG
1 GTGGAAA-TATGTGACACGGCATG
* * * *
7284375 GAGGGAATATGTGACATGGCAAG
1 GTGGAAATATGTGACACGGCATG
** *
7284398 GT-GAGAATATGTGACACGATATT
1 GTGGA-AATATGTGACACGGCATG
* * *
7284421 GAGGGAATATGTGAGA-GGACATG
1 GTGGAAATATGTGACACGG-CATG
* *
7284444 GT-GAGAATATATGACAC-GC-TA
1 GTGGA-AATATGTGACACGGCATG
*
7284465 GTGTGAGA-ATGTGACACGGCATG
1 GTG-GAAATATGTGACACGGCATG
*
7284488 GTGTG-AATATGTGACACGCCATG
1 GTG-GAAATATGTGACACGGCATG
*
7284511 GT-GAGAATATGTGAGACGGCATG
1 GTGGA-AATATGTGACACGGCATG
*
7284534 GT-GAGCATATGTGACA
1 GTGGA-AATATGTGACA
7284550 TAGATGTGAC
Statistics
Matches: 199, Mismatches: 54, Indels: 30
0.70 0.19 0.11
Matches are distributed among these distances:
21 12 0.06
22 9 0.05
23 161 0.81
24 17 0.09
ACGTcount: A:0.32, C:0.11, G:0.34, T:0.24
Consensus pattern (23 bp):
GTGGAAATATGTGACACGGCATG
Found at i:7284425 original size:46 final size:46
Alignment explanation
Indices: 7284361--7284549 Score: 197
Period size: 46 Copynumber: 4.2 Consensus size: 46
7284351 GTTTAAAGTT
* * *
7284361 TGTGACACGCCATGGAGGGAATATGTGACATGGCAAGGTGAGAATA
1 TGTGACACGCCATGGAGAGAATATGTGACACGGCATGGTGAGAATA
** * * *
7284407 TGTGACACGATATTGAGGGAATATGTGAGA-GGACATGGTGAGAATA
1 TGTGACACGCCATGGAGAGAATATGTGACACGG-CATGGTGAGAATA
* * * *
7284453 TATGACACGCTA-GTGTGAG-A-ATGTGACACGGCATGGTGTGAATA
1 TGTGACACGCCATG-GAGAGAATATGTGACACGGCATGGTGAGAATA
* * *
7284497 TGTGACACGCCATGGTGAGAATATGTGAGACGGCATGGTGAGCATA
1 TGTGACACGCCATGGAGAGAATATGTGACACGGCATGGTGAGAATA
7284543 TGTGACA
1 TGTGACA
7284550 TAGATGTGAC
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
44 34 0.28
45 7 0.06
46 79 0.66
ACGTcount: A:0.31, C:0.12, G:0.34, T:0.23
Consensus pattern (46 bp):
TGTGACACGCCATGGAGAGAATATGTGACACGGCATGGTGAGAATA
Found at i:7284502 original size:90 final size:90
Alignment explanation
Indices: 7284383--7284549 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 90
7284373 TGGAGGGAAT
* * * *
7284383 ATGTGACATGGCAAGGTGAGAATATGTGACACGATATTGAGGGAATATGTGAGA-GGACATGGTG
1 ATGTGACACGGCAAGGTGAGAATATGTGACACGACATGGAGAGAATATGTGAGACGG-CATGGTG
7284447 AGAATATATGACACGCTAGTGTGAGA
65 AGAATATATGACACGCTAGTGTGAGA
* * * *
7284473 ATGTGACACGGCATGGTGTGAATATGTGACACGCCATGGTGAGAATATGTGAGACGGCATGGTGA
1 ATGTGACACGGCAAGGTGAGAATATGTGACACGACATGGAGAGAATATGTGAGACGGCATGGTGA
* *
7284538 GCATATGTGACA
66 GAATATATGACA
7284550 TAGATGTGAC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 64 0.97
91 2 0.03
ACGTcount: A:0.32, C:0.11, G:0.34, T:0.23
Consensus pattern (90 bp):
ATGTGACACGGCAAGGTGAGAATATGTGACACGACATGGAGAGAATATGTGAGACGGCATGGTGA
GAATATATGACACGCTAGTGTGAGA
Found at i:7284628 original size:23 final size:23
Alignment explanation
Indices: 7284600--7284676 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
7284590 TGTGGGATTA
7284600 TGTGACACGGCATGGTGAGAATC
1 TGTGACACGGCATGGTGAGAATC
* * * *
7284623 TATGACACGACATGTTGA-AATTG
1 TGTGACACGGCATGGTGAGAA-TC
*
7284646 TGTGAGACGGCATGGTGAGAATC
1 TGTGACACGGCATGGTGAGAATC
7284669 TGTGACAC
1 TGTGACAC
7284677 AGTTGTGACA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 2 0.05
23 38 0.90
24 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.25
Consensus pattern (23 bp):
TGTGACACGGCATGGTGAGAATC
Found at i:7284740 original size:23 final size:23
Alignment explanation
Indices: 7284714--7284849 Score: 76
Period size: 23 Copynumber: 5.9 Consensus size: 23
7284704 TGTGACACAC
*
7284714 CATGGTGGGAATGTGTAACACGA
1 CATGGTGAGAATGTGTAACACGA
* * *
7284737 CATGGTGAGAATTTGTGACATGA
1 CATGGTGAGAATGTGTAACACGA
* ** *
7284760 CATGTTGA-AATCGTGCGAGACGA
1 CATGGTGAGAAT-GTGTAACACGA
* * * * * *
7284783 CATGGTGAGGATCTATGACATGG
1 CATGGTGAGAATGTGTAACACGA
* * *
7284806 CATGGTAAGAATGTGTGACACAA
1 CATGGTGAGAATGTGTAACACGA
* * *
7284829 CGTGGTGAGAATCTGTGACAC
1 CATGGTGAGAATGTGTAACAC
7284850 ACCATGGCTT
Statistics
Matches: 84, Mismatches: 27, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
22 3 0.04
23 79 0.94
24 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (23 bp):
CATGGTGAGAATGTGTAACACGA
Found at i:7284744 original size:127 final size:125
Alignment explanation
Indices: 7284471--7284802 Score: 382
Period size: 127 Copynumber: 2.6 Consensus size: 125
7284461 GCTAGTGTGA
* * * *
7284471 GAATGTG-ACACGGCATGGTGTGAATATGTGACACGCCATGGTGAGAA-TATGTGAGACGGCATG
1 GAATGTGTACACGGCATGGTGAGAATATGTGACACGACATGTTGA-AATTGTGTGAGACGGCATG
* * * *
7284534 GTGAGCATATGTGACATAGATGTGACACAGCAGATTTAGAGTTTATGACACACCATTGTGG
65 GTGAGAATCTGTGACACAGATGTGACACAGCAGATTTAGAGTTTATGACACACCATGGTGG
* *
7284595 GATTATGTG-ACACGGCATGGTGAGAATCTATGACACGACATGTTGAAATTGTGTGAGACGGCAT
1 GA--ATGTGTACACGGCATGGTGAGAATATGTGACACGACATGTTGAAATTGTGTGAGACGGCAT
* ** * * *
7284659 GGTGAGAATCTGTGACACAGTTGTGACATGGTAGGGTTTAGAGTTTGTGACACACCATGGTGG
64 GGTGAGAATCTGTGACACAGATGTGACACAGCA-GATTTAGAGTTTATGACACACCATGGTGG
* * * * * *
7284722 GAATGTGTAACACGACATGGTGAGAATTTGTGACATGACATGTTGAAATCGTGCGAGACGACATG
1 GAATGTGT-ACACGGCATGGTGAGAATATGTGACACGACATGTTGAAATTGTGTGAGACGGCATG
* *
7284787 GTGAGGATCTATGACA
65 GTGAGAATCTGTGACA
7284803 TGGCATGGTA
Statistics
Matches: 177, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
124 2 0.01
125 7 0.04
126 77 0.44
127 91 0.51
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (125 bp):
GAATGTGTACACGGCATGGTGAGAATATGTGACACGACATGTTGAAATTGTGTGAGACGGCATGG
TGAGAATCTGTGACACAGATGTGACACAGCAGATTTAGAGTTTATGACACACCATGGTGG
Found at i:7284856 original size:46 final size:46
Alignment explanation
Indices: 7284704--7284879 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
7284694 GTTTAGAGTT
* * *
7284704 TGTGACACACCATGGTGGGAATGTGTAACACGACATGGTGAGAATT
1 TGTGACACACCATGGTGAGAATGTGTGACACGACATGGTGAGAATC
* * * * *
7284750 TGTGACATGA-CATGTTGA-AATCGTGCGAGACGACATGGTGAGGATC
1 TGTGACA-CACCATGGTGAGAAT-GTGTGACACGACATGGTGAGAATC
* *** * * *
7284796 TATGACATGGCATGGTAAGAATGTGTGACACAACGTGGTGAGAATC
1 TGTGACACACCATGGTGAGAATGTGTGACACGACATGGTGAGAATC
* * *
7284842 TGTGACACACCATGGCT-TGAATATGTGACACGCCATGG
1 TGTGACACACCATGG-TGAGAATGTGTGACACGACATGG
7284880 CTTGAAATAG
Statistics
Matches: 98, Mismatches: 27, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
45 3 0.03
46 90 0.92
47 5 0.05
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (46 bp):
TGTGACACACCATGGTGAGAATGTGTGACACGACATGGTGAGAATC
Found at i:7284863 original size:23 final size:23
Alignment explanation
Indices: 7284837--7284885 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
7284827 AACGTGGTGA
*
7284837 GAATCTGTGACACACCATGGCTT
1 GAATATGTGACACACCATGGCTT
*
7284860 GAATATGTGACACGCCATGGCTT
1 GAATATGTGACACACCATGGCTT
7284883 GAA
1 GAA
7284886 ATAGAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (23 bp):
GAATATGTGACACACCATGGCTT
Found at i:7285686 original size:63 final size:63
Alignment explanation
Indices: 7285587--7285818 Score: 342
Period size: 63 Copynumber: 3.7 Consensus size: 63
7285577 AGCGTTGGCA
*
7285587 TGTAACAACATTTGACTTGGTATGCTTAGCGTGTAACAACATTTTGCATGGTATTCTATAGTG
1 TGTAACAACATTTGACCTGGTATGCTTAGCGTGTAACAACATTTTGCATGGTATTCTATAGTG
* *
7285650 TGTAACAACATTTGGCCTGGTATGCTTAGCATGTAACAACATTTTGCATGGTATTCTATAGTG
1 TGTAACAACATTTGACCTGGTATGCTTAGCGTGTAACAACATTTTGCATGGTATTCTATAGTG
* * * * *
7285713 TGTAACAACATTTGGCCTGGTATGCTTAGCGTGTAACAACA-TTTGTCTTGGTATGC-ATAATA
1 TGTAACAACATTTGACCTGGTATGCTTAGCGTGTAACAACATTTTG-CATGGTATTCTATAGTG
* * *
7285775 TGTAACAACATTTAACTTGGTATGCATAGCGTGTAACAACATTT
1 TGTAACAACATTTGACCTGGTATGCTTAGCGTGTAACAACATTT
7285819 ATTTCTTTCT
Statistics
Matches: 155, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
62 45 0.29
63 110 0.71
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (63 bp):
TGTAACAACATTTGACCTGGTATGCTTAGCGTGTAACAACATTTTGCATGGTATTCTATAGTG
Found at i:7285747 original size:94 final size:95
Alignment explanation
Indices: 7285584--7285818 Score: 307
Period size: 94 Copynumber: 2.5 Consensus size: 95
7285574 CTCAGCGTTG
* *
7285584 GCATGTAACAACA-TTTGACTTGGTATGCT-TAGCGTGTAACAACATTTTGCATGGTATTCTATA
1 GCATGTAACAACATTTTG-CTTGGTATGCTATAGCGTGTAACAACATTTGGCATGGTATGCTATA
* *
7285647 GTGTGTAACAACATTTGGCCTGGTATGCTTA
65 GCGTGTAACAACATTTGGCCTGGTATGCATA
* * * *
7285678 GCATGTAACAACATTTTGCATGGTATTCTATAGTGTGTAACAACATTTGGCCTGGTATGCT-TAG
1 GCATGTAACAACATTTTGCTTGGTATGCTATAGCGTGTAACAACATTTGGCATGGTATGCTATAG
* *
7285742 CGTGTAACAACATTTGTCTTGGTATGCATA
66 CGTGTAACAACATTTGGCCTGGTATGCATA
** **
7285772 ATATGTAACAACATTTAACTTGGTATGC-ATAGCGTGTAACAACATTT
1 GCATGTAACAACATTTTGCTTGGTATGCTATAGCGTGTAACAACATTT
7285819 ATTTCTTTCT
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
93 18 0.15
94 73 0.60
95 31 0.25
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (95 bp):
GCATGTAACAACATTTTGCTTGGTATGCTATAGCGTGTAACAACATTTGGCATGGTATGCTATAG
CGTGTAACAACATTTGGCCTGGTATGCATA
Found at i:7285819 original size:31 final size:31
Alignment explanation
Indices: 7285587--7285818 Score: 257
Period size: 31 Copynumber: 7.4 Consensus size: 31
7285577 AGCGTTGGCA
* *
7285587 TGTAACAACATTTGACTTGGTATGCTTAGCG
1 TGTAACAACATTTGGCTTGGTATGCATAGCG
* * * *
7285618 TGTAACAACATTTTGCATGGTATTCTATAGTG
1 TGTAACAACATTTGGCTTGGTATGC-ATAGCG
* * *
7285650 TGTAACAACATTTGGCCTGGTATGCTTAGCA
1 TGTAACAACATTTGGCTTGGTATGCATAGCG
* * * *
7285681 TGTAACAACATTTTGCATGGTATTCTATAGTG
1 TGTAACAACATTTGGCTTGGTATGC-ATAGCG
* *
7285713 TGTAACAACATTTGGCCTGGTATGCTTAGCG
1 TGTAACAACATTTGGCTTGGTATGCATAGCG
* ***
7285744 TGTAACAACATTTGTCTTGGTATGCATAATA
1 TGTAACAACATTTGGCTTGGTATGCATAGCG
**
7285775 TGTAACAACATTTAACTTGGTATGCATAGCG
1 TGTAACAACATTTGGCTTGGTATGCATAGCG
7285806 TGTAACAACATTT
1 TGTAACAACATTT
7285819 ATTTCTTTCT
Statistics
Matches: 165, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
31 114 0.69
32 51 0.31
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (31 bp):
TGTAACAACATTTGGCTTGGTATGCATAGCG
Found at i:7288511 original size:81 final size:81
Alignment explanation
Indices: 7288354--7288551 Score: 191
Period size: 81 Copynumber: 2.4 Consensus size: 81
7288344 GGGGAAGGGG
* * * *
7288354 ACCTT-CACTCAGTTGAGGCTGAAAGAGACCATGTTCCTCAGGCCGATGCAGTAGTCAACGCAGC
1 ACCTTGCA-TCAGTTGAGGCTGAAGGAGACCATGTTCCTCAAGCCGATACAATAGTCAACGCAGC
* * *
7288418 TGCAAGAGAGGATGGGA
65 TACAAGAAAGGATAGGA
* * ** * *
7288435 ACTTTGCATCAGTTGAGGCTGAAGGAGACCATGTTCCTCAAGCTGATACAATAGTTGAGGCTGCT
1 ACCTTGCATCAGTTGAGGCTGAAGGAGACCATGTTCCTCAAGCCGATACAATAGTCAACGCAGCT
* * *
7288500 ATAGGAAAGGATAGGT
66 ACAAGAAAGGATAGGA
* * * * *
7288516 ACCTTGCCTTAGTTCAAGCTGAAGGGGACCATGTTC
1 ACCTTGCATCAGTTGAGGCTGAAGGAGACCATGTTC
7288552 TTTAGAGCAC
Statistics
Matches: 94, Mismatches: 22, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
81 92 0.98
82 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (81 bp):
ACCTTGCATCAGTTGAGGCTGAAGGAGACCATGTTCCTCAAGCCGATACAATAGTCAACGCAGCT
ACAAGAAAGGATAGGA
Found at i:7290563 original size:82 final size:81
Alignment explanation
Indices: 7290426--7290588 Score: 281
Period size: 82 Copynumber: 2.0 Consensus size: 81
7290416 AATTAAAGGA
* *
7290426 AAATTGGTGGATTTCAAGGAATCAAGCAATCAAAGGTAAAATTTCTTGATTTTGACTTGTGATCT
1 AAATTGGTGGATTTCAAAGAATCAAGCAATCAAAGCTAAAATTTCTTGATTTTGACTTGTGATCT
7290491 ACCTTTCCCATGCATT
66 ACCTTTCCCATGCATT
* *
7290507 NAAATTGGTGGATTTCAAAGAATCAAGCAGTCCAAGCTAAAATTTCTTGATTTTGACTTGTGATC
1 -AAATTGGTGGATTTCAAAGAATCAAGCAATCAAAGCTAAAATTTCTTGATTTTGACTTGTGATC
7290572 TACCTTTCCCATGCATT
65 TACCTTTCCCATGCATT
7290589 TCTCCTTATT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (81 bp):
AAATTGGTGGATTTCAAAGAATCAAGCAATCAAAGCTAAAATTTCTTGATTTTGACTTGTGATCT
ACCTTTCCCATGCATT
Found at i:7291393 original size:13 final size:13
Alignment explanation
Indices: 7291375--7291399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7291365 AGAGAAATTG
7291375 TGATTTTATAAAA
1 TGATTTTATAAAA
7291388 TGATTTTATAAA
1 TGATTTTATAAA
7291400 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:7292698 original size:15 final size:16
Alignment explanation
Indices: 7292678--7292718 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
7292668 AAGAGATTTT
7292678 GATTTTAAAG-CTTTG
1 GATTTTAAAGTCTTTG
*
7292693 GATTTTAAAGTTTTTG
1 GATTTTAAAGTCTTTG
7292709 G-TTTTAAAGT
1 GATTTTAAAGT
7292719 TGTTTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (16 bp):
GATTTTAAAGTCTTTG
Found at i:7292719 original size:15 final size:15
Alignment explanation
Indices: 7292674--7292719 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
7292664 AGATAAGAGA
*
7292674 TTTTGATTTTAAAG-
1 TTTTGGTTTTAAAGT
*
7292688 CTTTGGATTTTAAAGT
1 TTTTGG-TTTTAAAGT
7292704 TTTTGGTTTTAAAGT
1 TTTTGGTTTTAAAGT
7292719 T
1 T
7292720 GTTTTAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.57
Consensus pattern (15 bp):
TTTTGGTTTTAAAGT
Found at i:7292763 original size:5 final size:5
Alignment explanation
Indices: 7292753--7292791 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
7292743 CTGCATGGCC
7292753 TAAGT TAAGT TAAGT TAAGT TAAGT T-AGT TAAGT TAAGT
1 TAAGT TAAGT TAAGT TAAGT TAAGT TAAGT TAAGT TAAGT
7292792 CAGATTAGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (5 bp):
TAAGT
Found at i:7292799 original size:19 final size:19
Alignment explanation
Indices: 7292754--7292793 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7292744 TGCATGGCCT
*
7292754 AAGTTAAGTTAAGTTAAGTT
1 AAGTT-AGTTAAGTTAAGTC
7292774 AAGTTAGTTAAGTTAAGTC
1 AAGTTAGTTAAGTTAAGTC
7292793 A
1 A
7292794 GATTAGGTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.38
Consensus pattern (19 bp):
AAGTTAGTTAAGTTAAGTC
Found at i:7299714 original size:20 final size:20
Alignment explanation
Indices: 7299689--7299734 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
7299679 GTTTGTCCCC
*
7299689 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTAGAGTATA
*
7299709 ATTTGACTTATTAGAGTATG
1 ATTTGACTTATTAGAGTATA
7299729 ATTTGA
1 ATTTGA
7299735 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTAGAGTATA
Found at i:7300696 original size:307 final size:307
Alignment explanation
Indices: 7300051--7300664 Score: 895
Period size: 307 Copynumber: 2.0 Consensus size: 307
7300041 GGAAGAGAGG
*
7300051 GAAAGAAAGGAAGAACAAACCCTAGGTGAGGAATTTCAAGAGAAAAAGTGTGGAAAATCAAGGAA
1 GAAAGAGAGGAAGAACAAACCCTAGGTGAGGAATTTCAAGAGAAAAAGTGTGGAAAATCAAGGAA
7300116 AACAAGTGAAAAAGGTAGGATTTTTCAACTTAAGCTTGAAATCTATTTTCCTTAAGCATTTCTCC
66 AACAAGTGAAAAAGGTAGGATTTTTCAACTTAAGCTTGAAATCTATTTTCCTTAAGCATTTCTCC
*
7300181 TTATTTTCCATGCTTAAATTACATGTTTTTATGATGAATTGTTGGCTGATCAAAATGGGTTAGGA
131 TTATTTTCCATGCTTAAATTACATGGTTTTATGATGAATTGTTGGCTGATCAAAATGGGTTAGGA
* *
7300246 GAGAGAAAGTTGTTAGATTAATTTGATTTTAAGTTATGTTAGTGTTTTTAGTTAGTTTAGCATAT
196 GAGAGAAAGTTGGTAGATTAATTTGATTTTAAGTTATGTTAGTGTTTTTAGTTAATTTAGCATAT
********************************
7300311 TTAGAAACAAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
261 TTAGAAACAAAACAACAAGAAAAGAATTTATTTTCTCCCACAACCAT
7300358 GAAAGAGAGGAAGAACAAACCCTAGGTGAGGAATTTCAAGAGAAAAAGTGTGGAAAATCAAGGAA
1 GAAAGAGAGGAAGAACAAACCCTAGGTGAGGAATTTCAAGAGAAAAAGTGTGGAAAATCAAGGAA
7300423 AACAAGTGAAAAAGGTAGGATTTTTCAACTTAAGCTTGAAATCTATTTTCCTTAAGCATTTCTCC
66 AACAAGTGAAAAAGGTAGGATTTTTCAACTTAAGCTTGAAATCTATTTTCCTTAAGCATTTCTCC
7300488 TTATTTTCCATGCTTAAATTACATGGTTTTATGATGAATTGTTGGCTGATCAAAATGGGTTAGGA
131 TTATTTTCCATGCTTAAATTACATGGTTTTATGATGAATTGTTGGCTGATCAAAATGGGTTAGGA
7300553 GAGAGAAAGTTGGTAGATTAATTTGATTTTAAGTTATGTTAGTGTTTTTAGTTAATTTAGCATAT
196 GAGAGAAAGTTGGTAGATTAATTTGATTTTAAGTTATGTTAGTGTTTTTAGTTAATTTAGCATAT
*
7300618 TTAGAAACAAAACCACAAGAAAAGAATTTATTTTCTCCCACAACCAT
261 TTAGAAACAAAACAACAAGAAAAGAATTTATTTTCTCCCACAACCAT
7300665 TAATGGGCGA
Statistics
Matches: 270, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
307 270 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.31
Consensus pattern (307 bp):
GAAAGAGAGGAAGAACAAACCCTAGGTGAGGAATTTCAAGAGAAAAAGTGTGGAAAATCAAGGAA
AACAAGTGAAAAAGGTAGGATTTTTCAACTTAAGCTTGAAATCTATTTTCCTTAAGCATTTCTCC
TTATTTTCCATGCTTAAATTACATGGTTTTATGATGAATTGTTGGCTGATCAAAATGGGTTAGGA
GAGAGAAAGTTGGTAGATTAATTTGATTTTAAGTTATGTTAGTGTTTTTAGTTAATTTAGCATAT
TTAGAAACAAAACAACAAGAAAAGAATTTATTTTCTCCCACAACCAT
Found at i:7321760 original size:27 final size:26
Alignment explanation
Indices: 7321720--7321770 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
7321710 ATGATTTTTT
* *
7321720 AATTAATCTATTTAATTTTTAAAAAAG
1 AATTAATATATTTAA-CTTTAAAAAAG
*
7321747 AATTAATATTTTTAACTTTAAAAA
1 AATTAATATATTTAACTTTAAAAA
7321771 GTGTGCAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
AATTAATATATTTAACTTTAAAAAAG
Found at i:7323918 original size:17 final size:17
Alignment explanation
Indices: 7323874--7323919 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
7323864 GGCAAATTTT
*
7323874 AGATTTTATAAACAAAA
1 AGATTTTATAAATAAAA
*
7323891 ATGA-GTT-TAAATAAAA
1 A-GATTTTATAAATAAAA
7323907 AGATTTTATAAAT
1 AGATTTTATAAAT
7323920 TGTTTTGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
15 2 0.09
16 11 0.48
17 8 0.35
18 2 0.09
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.35
Consensus pattern (17 bp):
AGATTTTATAAATAAAA
Found at i:7326458 original size:26 final size:26
Alignment explanation
Indices: 7326429--7326487 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
7326419 ATTTTCTAGT
*
7326429 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTGTATTTTCTCTCTTCTT-C
* *
7326455 TTTCCTCTGTATTTTCTCTCTTGTTC
1 TTTCCTTTGTATTTTCTCTCTTCTTC
7326481 TTTCCTT
1 TTTCCTT
7326488 ATGGCCGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.57
27 12 0.43
ACGTcount: A:0.02, C:0.27, G:0.05, T:0.66
Consensus pattern (26 bp):
TTTCCTTTGTATTTTCTCTCTTCTTC
Found at i:7337401 original size:90 final size:88
Alignment explanation
Indices: 7337292--7337473 Score: 222
Period size: 90 Copynumber: 2.0 Consensus size: 88
7337282 ACACAATTCG
* * * * *
7337292 TATTCTCATAATAATGGTATGCATTAATATTTTAACTATATAATATATAAAATATTTTAAAAATT
1 TATTCTCATAATAATGGTATGAATTAATATTGTAAATATATAATACATAAAATATTTTAAAAAAT
* * *
7337357 TTGGAGATTAAATATTTTTCTTATC
66 TTGAAG-CTAAATA-TTTTCTTATA
* * * *
7337382 TATTCTCATAAT-GTAGGTATTAATTAATGTTGTAAATGTATAATACATAAAATATTTTAAAAAA
1 TATTCTCATAATAAT-GGTATGAATTAATATTGTAAATATATAATACATAAAATATTTTAAAAAA
7337446 TTTGAAGCTAAATATTTTCTTATA
65 TTTGAAGCTAAATATTTTCTTATA
7337470 TATT
1 TATT
7337474 ATGATATGAA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
88 13 0.16
89 7 0.09
90 59 0.75
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.46
Consensus pattern (88 bp):
TATTCTCATAATAATGGTATGAATTAATATTGTAAATATATAATACATAAAATATTTTAAAAAAT
TTGAAGCTAAATATTTTCTTATA
Found at i:7338281 original size:30 final size:30
Alignment explanation
Indices: 7338190--7338284 Score: 127
Period size: 30 Copynumber: 3.2 Consensus size: 30
7338180 TATTAAATTT
* ***
7338190 TTATATTTTTATATTGAGTCAAATAAATTT
1 TTATATTTTTATTTTGAGTCAAATAAACCC
**
7338220 TTATATTTTTATTTTGAGTCAAATAGTCCC
1 TTATATTTTTATTTTGAGTCAAATAAACCC
*
7338250 TTATATTTTTATTTTGAATCAAATAAACCC
1 TTATATTTTTATTTTGAGTCAAATAAACCC
7338280 TTATA
1 TTATA
7338285 ATTAATGATT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (30 bp):
TTATATTTTTATTTTGAGTCAAATAAACCC
Found at i:7340213 original size:8 final size:8
Alignment explanation
Indices: 7340200--7340227 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7340190 CCAAACCAAA
7340200 AAGGCTCC
1 AAGGCTCC
7340208 AAGGCTCC
1 AAGGCTCC
7340216 AAGGCTCC
1 AAGGCTCC
7340224 AAGG
1 AAGG
7340228 AACACACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.32, G:0.29, T:0.11
Consensus pattern (8 bp):
AAGGCTCC
Found at i:7340674 original size:56 final size:54
Alignment explanation
Indices: 7340614--7340724 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 54
7340604 TAAATGTGTG
* *
7340614 ATTAATATTTATTGA-TTAATT-ATTTTAAATCAATTAATTAATTTATTTATAAAATA
1 ATTAATATTTATTAATTTAATTCATTTTAAA--AATTAAATAATTTA-TTA-AAAATA
* *
7340670 ATTAATATTTATTAATTTAATTCTTTTTAAAACTTAAATAATTTATTAAAAATA
1 ATTAATATTTATTAATTTAATTCATTTTAAAAATTAAATAATTTATTAAAAATA
7340724 A
1 A
7340725 ATATTTCATA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
54 7 0.14
55 3 0.06
56 26 0.53
57 6 0.12
58 7 0.14
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (54 bp):
ATTAATATTTATTAATTTAATTCATTTTAAAAATTAAATAATTTATTAAAAATA
Found at i:7345538 original size:14 final size:14
Alignment explanation
Indices: 7345519--7345555 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
7345509 TAATGGCAAC
7345519 TTCTTACATCGGTA
1 TTCTTACATCGGTA
*
7345533 TTCTTACATTGGTA
1 TTCTTACATCGGTA
7345547 TTCTTACAT
1 TTCTTACAT
7345556 AAATGAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.49
Consensus pattern (14 bp):
TTCTTACATCGGTA
Found at i:7346470 original size:55 final size:53
Alignment explanation
Indices: 7346395--7346580 Score: 174
Period size: 55 Copynumber: 3.4 Consensus size: 53
7346385 TGAAGAGTTA
* * * *
7346395 TTTTAGCGTGTTACGACTGTTACTGGCGTGTTGTGGGTTAACTAGTTATTTGGGT
1 TTTTAGCGTGTCACGGCTGTTCCTGG-GTGTCGTGGGTTAACTAGTT-TTTGGGT
* * * *
7346450 TGTTAGCGTGTCACGGCTGTTCCTAGGGTGTGGTGGGTTAACTGAATTTATGGGT
1 TTTTAGCGTGTCACGGCTGTTCCT-GGGTGTCGTGGGTTAACT-AGTTTTTGGGT
* * * ** *
7346505 TTTTGGCGTGTCATGGCTATTCCTAATGTGTCGTGGGTTAACTAGTTTTTTGGAT
1 TTTTAGCGTGTCACGGCTGTTCCT-GGGTGTCGTGGGTTAACTAG-TTTTTGGGT
* *
7346560 TTTTAGCATGTCACGGATGTT
1 TTTTAGCGTGTCACGGCTGTT
7346581 GGTGTAACCA
Statistics
Matches: 106, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
54 1 0.01
55 100 0.94
56 5 0.05
ACGTcount: A:0.15, C:0.12, G:0.31, T:0.42
Consensus pattern (53 bp):
TTTTAGCGTGTCACGGCTGTTCCTGGGTGTCGTGGGTTAACTAGTTTTTGGGT
Found at i:7350249 original size:31 final size:31
Alignment explanation
Indices: 7350203--7350504 Score: 313
Period size: 31 Copynumber: 9.8 Consensus size: 31
7350193 AATAAGGAAT
*
7350203 AAATG-TGAGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
7350233 AAATGTTGTGACACGCCGTGCATATCAAATA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * * *
7350264 AAATATTGTAACATGCCATTCATAACAAGAA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
***
7350295 AAATGAAATGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
7350326 AAATGTTGTGACACGCCATGCATAACAAGATA
1 AAATGTTGTGACACGCCATGCATAACAAG-TA
* * * * *
7350358 AACT-TGGTGACACGCCAAGGATAACAAGCA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
7350388 AAATGTTCTGACACGCCATGCGTAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
7350419 AAA-GCTTGTGACACGCCATGCATAATAAGTT
1 AAATG-TTGTGACACGCCATGCATAACAAGTA
* * *
7350450 AAACGTTGTGACACGCCATGGATAACAATTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * *
7350481 AATTATTCTGACCCGCCATGCATA
1 AAATGTTGTGACACGCCATGCATA
7350505 GCAAATTCTG
Statistics
Matches: 218, Mismatches: 49, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
30 10 0.05
31 202 0.93
32 6 0.03
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.22
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:7351128 original size:19 final size:21
Alignment explanation
Indices: 7351082--7351123 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
7351072 TCTTGGTATC
7351082 AAATTAATTGTGTATAGGCAAAA
1 AAATTAATTGTGTAT--GCAAAA
7351105 AAATTAATTGTGTAT-CAAA
1 AAATTAATTGTGTATGCAAA
7351124 TAATTGTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
23 15 0.79
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (21 bp):
AAATTAATTGTGTATGCAAAA
Found at i:7351189 original size:14 final size:15
Alignment explanation
Indices: 7351170--7351230 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
7351160 TATATCTGTT
*
7351170 TACAATGAAT-TGTA
1 TACAATAAATGTGTA
7351184 TACAATAAATTGTGTA
1 TACAATAAA-TGTGTA
*
7351200 TACAAAAAATGTGTA
1 TACAATAAATGTGTA
* *
7351215 TAAAATGAAT-TGTA
1 TACAATAAATGTGTA
7351229 TA
1 TA
7351231 AAAAAATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
14 14 0.35
15 14 0.35
16 12 0.30
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.34
Consensus pattern (15 bp):
TACAATAAATGTGTA
Found at i:7351201 original size:16 final size:16
Alignment explanation
Indices: 7351180--7351227 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
7351170 TACAATGAAT
7351180 TGTATACAATAAATTG
1 TGTATACAATAAATTG
*
7351196 TGTATACAA-AAAATG
1 TGTATACAATAAATTG
* *
7351211 TGTATAAAATGAATTG
1 TGTATACAATAAATTG
7351227 T
1 T
7351228 ATAAAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (16 bp):
TGTATACAATAAATTG
Found at i:7351231 original size:14 final size:15
Alignment explanation
Indices: 7351180--7351237 Score: 59
Period size: 14 Copynumber: 3.9 Consensus size: 15
7351170 TACAATGAAT
*
7351180 TGTATACAATAAATTG
1 TGTATAAAATAAA-TG
7351196 TGTATACAAA-AAATG
1 TGTATA-AAATAAATG
*
7351211 TGTATAAAATGAAT-
1 TGTATAAAATAAATG
7351225 TGTATAAAA-AAAT
1 TGTATAAAATAAAT
7351238 TTATGTGTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.08
14 12 0.32
15 11 0.30
16 9 0.24
17 2 0.05
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (15 bp):
TGTATAAAATAAATG
Found at i:7352750 original size:31 final size:31
Alignment explanation
Indices: 7352712--7353073 Score: 327
Period size: 31 Copynumber: 11.6 Consensus size: 31
7352702 ATCCATAAAC
*
7352712 AGTAAAATGTTGTGACACG-CAGTGCATACCA
1 AGTAAAATGTTGTGACACGCCA-TGCATAACA
* * *
7352743 AGTAAAATGTTGTCACACGCCATGTAAAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
7352774 AGTAAAATGTTGTGACACGCCATGCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * * **
7352805 AGATAAACT-TGGTGACACGCCAAGGATAATG
1 AG-TAAAATGTTGTGACACGCCATGCATAACA
* *
7352836 AGGAAAATGTTGTGACACGTCATGCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * * *
7352867 AGATAAACT-TGGTGACACGCCAAGGATAACG
1 AG-TAAAATGTTGTGACACGCCATGCATAACA
* * * *
7352898 AGGAAAATGTTGTGACACGTCATGCAAAATA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * *
7352929 ATTAAAATGTTGTGACACACCATACATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * *
7352960 AGATAAACT-TGGTGACACGCCAAGGATAACA
1 AG-TAAAATGTTGTGACACGCCATGCATAACA
* * * *
7352991 AGCAAAATGTTCTGACACTCCATGCATATCAA
1 AGTAAAATGTTGTGACACGCCATGCATAAC-A
* * * *
7353023 AATCAAATGTTGTGACATGCCATGAATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
7353054 AGTAAAATGTTGTGACACGC
1 AGTAAAATGTTGTGACACGC
7353074 TAAAGCTGAC
Statistics
Matches: 253, Mismatches: 70, Indels: 16
0.75 0.21 0.05
Matches are distributed among these distances:
30 12 0.05
31 202 0.80
32 39 0.15
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (31 bp):
AGTAAAATGTTGTGACACGCCATGCATAACA
Found at i:7353055 original size:63 final size:62
Alignment explanation
Indices: 7352932--7353071 Score: 165
Period size: 63 Copynumber: 2.2 Consensus size: 62
7352922 CAAAATAATT
* *
7352932 AAAATGTTGTGACACACCATACATAACAAGATAAACTTGGTGACACGCCAAGGATAACAAGC
1 AAAATGTTGTGACACACCATACATAACAAAATAAACTTGGTGACACGCCAAGAATAACAAGC
* * * * * * * *
7352994 AAAATGTTCTGACACTCCATGCATATCAAAATCAAA-TGTTGTGACATGCCATGAATAACAAGT
1 AAAATGTTGTGACACACCATACATAACAAAAT-AAACT-TGGTGACACGCCAAGAATAACAAGC
7353057 AAAATGTTGTGACAC
1 AAAATGTTGTGACAC
7353072 GCTAAAGCTG
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
62 28 0.43
63 37 0.57
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.23
Consensus pattern (62 bp):
AAAATGTTGTGACACACCATACATAACAAAATAAACTTGGTGACACGCCAAGAATAACAAGC
Found at i:7353716 original size:156 final size:155
Alignment explanation
Indices: 7353420--7353902 Score: 564
Period size: 156 Copynumber: 3.1 Consensus size: 155
7353410 CGATTGGATC
* * *
7353420 AACTACAATAACATATATAACTGTGTTATTCAATAATCATATATGGAATTGTTGAACATTAACCG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTAT-GAATTGTTGAACATTAACCG
* *
7353485 TTACAACTTTAATAT-CTTAACCGATGACTCGTTAGCAGTCTGCGGTGGAGTTGGACCGATCGGT
65 TTACAACTTTAATATCCTT-ACCGATCACTCGTTAGCAATCTGCGGTGGAGTTGGACCGATCGGT
*
7353549 GCTTCAAGACCTGTCGTCACTTTCGCA
129 GCTTCAAGACCTGTCGTCACTTCCGCA
* * * * *
7353576 TACTGCAATTACATATTTAACTGTGTTATTTAATAATCATGTATGAAATTGTTGAATATTAACTG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTATG-AATTGTTGAACATTAACCG
*
7353641 TTACAACTTTAATATCCTTACCG-TCAGCTCGTTAGCAATCTGTGGTGGAGTCT-GACCGATCGG
65 TTACAACTTTAATATCCTTACCGATCA-CTCGTTAGCAATCTGCGGTGGAGT-TGGACCGATCGG
* *
7353704 TGCTTCAGGACCTGTCGTCGCTTCCGCA
128 TGCTTCAAGACCTGTCGTCACTTCCGCA
* * *
7353732 AACTGCAATTACATATAGAATTGTGTTATTCAATAATCATGTTTTGAATTGTTGAACATTAACCG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATG-TATGAATTGTTGAACATTAACCG
* * ** *** * *
7353797 TTACAACTTTAATATCTTTACCG-CCGGTTCGTTAGTTGTCTACGGTTGG-GTTGGACCGATCAG
65 TTACAACTTTAATATCCTTACCGATC-ACTCGTTAGCAATCTGCGG-TGGAGTTGGACCGATCGG
* * * *
7353860 TGCTT-GAGAACCTGTCGTCGCTTCTGTA
128 TGCTTCAAG-ACCTGTCGTCACTTCCGCA
*
7353888 AACTGTAATTACATA
1 AACTGCAATTACATA
7353903 AATTACTATG
Statistics
Matches: 281, Mismatches: 37, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
155 5 0.02
156 266 0.95
157 10 0.04
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (155 bp):
AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTATGAATTGTTGAACATTAACCGT
TACAACTTTAATATCCTTACCGATCACTCGTTAGCAATCTGCGGTGGAGTTGGACCGATCGGTGC
TTCAAGACCTGTCGTCACTTCCGCA
Found at i:7355586 original size:31 final size:31
Alignment explanation
Indices: 7355548--7355873 Score: 352
Period size: 31 Copynumber: 10.5 Consensus size: 31
7355538 AATAAGGAAT
* **
7355548 AAATGTTGTGACAGGCCATGCATTGCAA-TCA
1 AAATGTTGTGACACGCCATGCATAACAAGT-A
**
7355579 AAATGTTGTGACACGCCATGCATTGCAA-TCA
1 AAATGTTGTGACACGCCATGCATAACAAGT-A
*
7355610 AAATGTTGTGACACGCTATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
7355641 AAATGTTGTGACACGCCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
7355672 AAACGTTGTGACACGCCATGCATATCAAGTT
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
7355703 AAACGTTATGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
7355734 AAATGTTGTCAAACGCCATGCATAAGAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
7355765 AAAT-TCTGTGACACGACATGCATATCAAGTA
1 AAATGT-TGTGACACGCCATGCATAACAAGTA
* * *
7355796 AAATGTTGTCACATGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * ** *
7355827 AAATGCTGTCACACGTTATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
7355858 AAATGCTGTCACACGC
1 AAATGTTGTGACACGC
7355874 TAATAACTAA
Statistics
Matches: 263, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
30 1 0.00
31 260 0.99
32 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:7356407 original size:53 final size:52
Alignment explanation
Indices: 7356343--7356461 Score: 166
Period size: 53 Copynumber: 2.3 Consensus size: 52
7356333 TCTATTTCAA
* * *
7356343 ACCATGACGTGTCAGCTGCTCAAGCACTGCCGTGTCACGCACTCTAAACCATG
1 ACCATGGCGTGTCAGCTGCTCAAGCAATGCCGTGTCACACACTCTAAA-CATG
* **
7356396 ACCATGGCGTGTTAGCTTTTCAAGCAATGCCGTGTCACACACTCTAAACATG
1 ACCATGGCGTGTCAGCTGCTCAAGCAATGCCGTGTCACACACTCTAAACATG
*
7356448 ACCATGGCATGTCA
1 ACCATGGCGTGTCA
7356462 CCAACTCTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
52 16 0.28
53 42 0.72
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (52 bp):
ACCATGGCGTGTCAGCTGCTCAAGCAATGCCGTGTCACACACTCTAAACATG
Found at i:7356610 original size:94 final size:94
Alignment explanation
Indices: 7356449--7356797 Score: 466
Period size: 94 Copynumber: 3.7 Consensus size: 94
7356439 CTAAACATGA
* * * * * *
7356449 CCATGGCATGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCTCCATAACGTGTCACCAAC
1 CCATGGCGTCTCACCAACTCTGAACGCTGCCATGTCACACATTCCCTCCATGACGTGTCACCAAC
* **
7356514 TCTTAACTCTGGCATCTCACAGATTCAAT
66 TCTTAACTCTGGCGTCTCACAGATTCCCT
* * * * *
7356543 CCATGGCGTCTCACCAACCCTGAACGCTGACGTGTCACAAATTCCCTCCATGCCGTGTCACCAAC
1 CCATGGCGTCTCACCAACTCTGAACGCTGCCATGTCACACATTCCCTCCATGACGTGTCACCAAC
* *
7356608 TCTTAA-TCTGGCGTGTCACAAATTCCCT
66 TCTTAACTCTGGCGTCTCACAGATTCCCT
* *
7356636 CCATGGCGTCTCACCAACTCTGAACCCTGCCATGTCACACATTCCCACCATGACGTGTCACCAAC
1 CCATGGCGTCTCACCAACTCTGAACGCTGCCATGTCACACATTCCCTCCATGACGTGTCACCAAC
7356701 TCTTAACTCTGGCGTCTCACAGATTCCCT
66 TCTTAACTCTGGCGTCTCACAGATTCCCT
* * * ** * *
7356730 CCATGGCGTCTCACCAACTCTGAGCGGTGCCGTGTCACACATTCCCAACATGACGTTTCACAAAC
1 CCATGGCGTCTCACCAACTCTGAACGCTGCCATGTCACACATTCCCTCCATGACGTGTCACCAAC
7356795 TCT
66 TCT
7356798 AAACCCTGCC
Statistics
Matches: 224, Mismatches: 30, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
93 81 0.36
94 143 0.64
ACGTcount: A:0.24, C:0.36, G:0.15, T:0.25
Consensus pattern (94 bp):
CCATGGCGTCTCACCAACTCTGAACGCTGCCATGTCACACATTCCCTCCATGACGTGTCACCAAC
TCTTAACTCTGGCGTCTCACAGATTCCCT
Found at i:7356642 original size:23 final size:23
Alignment explanation
Indices: 7356573--7356649 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
7356563 TGAACGCTGA
*
7356573 CGTGTCACAAATTCCCTCCATGC
1 CGTGTCACAAATTCCCTCCATGG
* * **
7356596 CGTGTCACCAA--CTCTTAATCTGG
1 CGTGTCACAAATTCCCTCCA--TGG
7356619 CGTGTCACAAATTCCCTCCATGG
1 CGTGTCACAAATTCCCTCCATGG
*
7356642 CGTCTCAC
1 CGTGTCAC
7356650 CAACTCTGAA
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
21 4 0.10
23 32 0.80
25 4 0.10
ACGTcount: A:0.21, C:0.36, G:0.16, T:0.27
Consensus pattern (23 bp):
CGTGTCACAAATTCCCTCCATGG
Found at i:7356727 original size:140 final size:141
Alignment explanation
Indices: 7356457--7356807 Score: 373
Period size: 140 Copynumber: 2.5 Consensus size: 141
7356447 GACCATGGCA
* * * *
7356457 TGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCTCCATAACGTGTCACCAACTCTTAACT
1 TGTCACCAACTCTGAACTCTGGCATGTCACAAATTCCCTCCATAACGTCTCACCAACTCTGAACC
* * * *
7356522 CTGGCATCTCACAGATTCAATCCATGGCGTCTCACCAACCCTGAACGCTGACGTGTCACAAATTC
66 CTGCCATCTCACACATTCAATCCATGACGTCTCACCAACCCTGAACGCTGACGTCTCACAAATTC
7356587 CCTCCATGCCG
131 CCTCCATGCCG
* * **
7356598 TGTCACCAACTCTTAA-TCTGGCGTGTCACAAATTCCCTCCATGGCGTCTCACCAACTCTGAACC
1 TGTCACCAACTCTGAACTCTGGCATGTCACAAATTCCCTCCATAACGTCTCACCAACTCTGAACC
* * * * * * * *
7356662 CTGCCATGTCACACATTCCCA-CCATGACGTGTCACCAACTCTTAACTCTGGCGTCTCACAGATT
66 CTGCCATCTCACACATT-CAATCCATGACGTCTCACCAACCCTGAACGCTGACGTCTCACAAATT
*
7356726 CCCTCCATGGCG
130 CCCTCCATGCCG
* * ** * * * ** * * * *
7356738 TCTCACCAACTCTGAGCGGTGCCGTGTCACACATTCCCAACATGACGTTTCACAAACTCTAAACC
1 TGTCACCAACTCTGAACTCTGGCATGTCACAAATTCCCTCCATAACGTCTCACCAACTCTGAACC
7356803 CTGCC
66 CTGCC
7356808 TTGCGACAGC
Statistics
Matches: 174, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
140 114 0.66
141 60 0.34
ACGTcount: A:0.24, C:0.36, G:0.15, T:0.25
Consensus pattern (141 bp):
TGTCACCAACTCTGAACTCTGGCATGTCACAAATTCCCTCCATAACGTCTCACCAACTCTGAACC
CTGCCATCTCACACATTCAATCCATGACGTCTCACCAACCCTGAACGCTGACGTCTCACAAATTC
CCTCCATGCCG
Found at i:7356768 original size:47 final size:47
Alignment explanation
Indices: 7356449--7356775 Score: 359
Period size: 47 Copynumber: 7.0 Consensus size: 47
7356439 CTAAACATGA
* *
7356449 CCATGGCATGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
** * * * **
7356496 CCATAACGTGTCACCAACTCTTAACTCTGGCATCTCACAGATTCAAT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
* * * * *
7356543 CCATGGCGTCTCACCAACCCTGAACGCTGACGTGTCACAAATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
* * *
7356590 CCATGCCGTGTCACCAACTCTTAA-TCTGGCGTGTCACAAATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
* * * * * *
7356636 CCATGGCGTCTCACCAACTCTGAACCCTGCCATGTCACACATTCCCA
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
* * *
7356683 CCATGACGTGTCACCAACTCTTAACTCTGGCGTCTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
* * ** * *
7356730 CCATGGCGTCTCACCAACTCTGAGCGGTGCCGTGTCACACATTCCC
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCC
7356776 AACATGACGT
Statistics
Matches: 228, Mismatches: 51, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
46 41 0.18
47 187 0.82
ACGTcount: A:0.23, C:0.37, G:0.16, T:0.25
Consensus pattern (47 bp):
CCATGGCGTGTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCT
Found at i:7358586 original size:929 final size:923
Alignment explanation
Indices: 7356795--7358646 Score: 3375
Period size: 929 Copynumber: 2.0 Consensus size: 923
7356785 TTTCACAAAC
* * * *
7356795 TCTAAACCCTGCCTTGCGACAGCCATCTAACATATGGCCTGCTATAGCAGAACCATTTTCTGCTT
1 TCTAAACCCTACCCTGCGACAGCCATCTAACATATGGCCTGCTATAGCAGAACCATTTCCTACTT
*
7356860 TGGATTCACATCTTTCTCCTTTCAATTCACCACCGTATCAAGGATTTCTGGTTTCACATCATTGG
66 TGGATTCACATCTTTCTCCTTTCAATTCACCACCGTATCAAGGATTTCTGGTTTCACATCATTAG
*
7356925 CCAAGCTTTCCATTCATGACGACCTGTTCCTCGTTCGATTTAATATCTCTCTTCTCCTATTATCT
131 CCAAGCTTTCCATTCATGACGACCGGTTCCTCGTTCGATTTAATATCTCTCTTCTCCTATTATCT
7356990 GAATGTCATGTCCCAAATCTCTAAAAACCCATCTCATGCAACATTATTTTGTTTTGCACAACCTT
196 GAATGTCATGTCCCAAATCTCTAAAAACCCATCTCATGCAACATTATTTTGTTTTGCACAACCTT
*
7357055 CGAAAAAAAAATTTGGGTATTTTGCACAACCAATCTTTGCATATTTTTTTTTCTCATTTTTCGCC
261 CGAAAAAAAAATTTGGGTATTTTGCACAACCAATCTTTACATATTTTTTTTTCTCATTTTTCGCC
* *
7357120 TGTTTGAGAGTGTACGCTAATGAAGACGGCTCATTAAGGGCATTTTTGTCTCAAAATATTTTCTA
326 TGTTTGAGAGTGTACACTAATGAAGACGGCTCATTAAGGGCATTTTTATCTCAAAATATTTTCTA
7357185 ATGGCTAAAAACAGTTAAAAGTATTCTGCCGGTTATTTACAAAAACACGTTATTTATAAGGGCTT
391 ATGGCTAAAAACAGTTAAAAGTATTCTGCCGGTTATTTACAAAAACACGTTATTTATAAGGGCTT
7357250 AAAAAAATCCCCTTTTAAGAAAGTCTTAGTCATTGGGAGCTTCATTGAACAATGAGTTCTCCCAA
456 AAAAAAATCCCCTTTTAAGAAAGTCTTAGTCATTGGGAGCTTCATTGAACAATGAGTTCTCCCAA
7357315 TTCTATAAAGGAGAATGGCTTGGAAAGTGGAGGCCATTGAGTTGTAAGTGCAAAACAAATATTTT
521 TTCTATAAAGGAGAATGGCTTGGAAAGTGGAGGCCATTGAGTTGTAAGTGCAAAACAAATATTTT
7357380 CCATGGTTGGTCGATTCTATGGATTTGCATGCAAACATGCAAACGCTACTTGTACAATAGAGACC
586 CCATGGTTGGTCGATTCTATGGATTTGCATGCAAACATGCAAACGCTACTTGTACAATAGAGACC
7357445 ACACCTTTTGCAACTCGACTTCTTGGAGGTTGGAGGCGTTGGTTTGCCACATCACTCAGTAATGT
651 ACACCTTTTGCAACTCGACTTCTTGGAGGTTGGAGGCGTTGGTTTGCCACATCACTCAGTAATGT
7357510 ATGGCGAGTGATCCGCGATGAGGACAAGGATGACGCCAATGATGATGACAACGATGAAGCTAAAG
716 ATGGCGAGTGATCCGCGATGAGGACAAGGATGACGCCAATGATGATGACAACGATGAAGCTAAAG
7357575 TCAAGATGAGATCATCAGGATGGTTGCCTCTAATTATTTCAAGTGTTAGCACTCCAAAGCTGTAG
781 TCAAGATGAGATCATCAGGATGGTTGCCTCTAATTATTTCAAGTGTTAGCACTCCAAAGCTGTAG
7357640 ACATCACATTTCTTATTCACTTTCGTTGTGTAAGCTAGCTCTTTCAAAACATTGGTCATATATTG
846 ACATCACATTTCTTATTCACTTTCGTTGTGTAAGCTAGCTCTTTCAAAACATTGGTCATATATTG
7357705 TTTTGAAAATATT
911 TTTTGAAAATATT
* * *
7357718 NTCTAAACCCTACCCTGCGATAGCCGTCTCACATATGGCCTGCTATAGCA-AGACCATTTCCTAC
1 -TCTAAACCCTACCCTGCGACAGCCATCTAACATATGGCCTGCTATAGCAGA-ACCATTTCCTAC
*
7357782 TTTGGATTCACATCTTTCTCCTTTCAATTTACCACCGTATCAAGGATTTCTGGTTTCACATCATT
64 TTTGGATTCACATCTTTCTCCTTTCAATTCACCACCGTATCAAGGATTTCTGGTTTCACATCATT
** * *
7357847 AGCCAAGCTTTTGATTCATGACGACCGGTTCCTCGTTCGATTTAATATTTTTCTTCTCCTATTAT
129 AGCCAAGCTTTCCATTCATGACGACCGGTTCCTCGTTCGATTTAATATCTCTCTTCTCCTATTAT
** * * *
7357912 CTGAATGTTGTGTCCTAAATCTCTGAGAACCCATCTCATGCAACATTATTTTGTTTTGCACAACC
194 CTGAATGTCATGTCCCAAATCTCTAAAAACCCATCTCATGCAACATTATTTTGTTTTGCACAACC
*
7357977 TTTGAAAAAAAAA-TTGGGTATTTTGCACAACCAATCTTTACATATTTATTTTTTTTCTTCCATT
259 TTCGAAAAAAAAATTTGGGTATTTTGCACAACCAATCTTTACATA--T-TTTTTTTTC-T-CATT
*
7358041 TTTCGCCTGTTTGAGAGTGTACACTAAATGAAGATGGCTCATTAAGGGCATTTTTATCTCAAAAT
319 TTTCGCCTGTTTGAGAGTGTACACT-AATGAAGACGGCTCATTAAGGGCATTTTTATCTCAAAAT
* **
7358106 CTTTTCTGTTGGCTAAAAACAGTTAAAAGTATTCTGCCGGTTATTTACAAAAACACGTTATTTAT
383 ATTTTCTAATGGCTAAAAACAGTTAAAAGTATTCTGCCGGTTATTTACAAAAACACGTTATTTAT
7358171 AAGGGCTTAAAAAAATCCCCTTTTAAGAAAGTCTTAGTCATTGGGAGCTTCATTGAACAATGAGT
448 AAGGGCTTAAAAAAATCCCCTTTTAAGAAAGTCTTAGTCATTGGGAGCTTCATTGAACAATGAGT
7358236 TCTCCCAATTCTATAAAGGAGAATGGCTTGGAAAGTGGAGGCCATTGAGTTGTAAGTGCAAAACA
513 TCTCCCAATTCTATAAAGGAGAATGGCTTGGAAAGTGGAGGCCATTGAGTTGTAAGTGCAAAACA
7358301 AATATTTTCCATGGTTGGTCGATTCTATGGATTTGCATGCAAACATGCAAACGCTACTTGTACAA
578 AATATTTTCCATGGTTGGTCGATTCTATGGATTTGCATGCAAACATGCAAACGCTACTTGTACAA
7358366 TAGAGACCACACCTTTTGCAACTCGACTTCTTGGAGGTTGGAGGCGTTGGTTTGCCACATCACTC
643 TAGAGACCACACCTTTTGCAACTCGACTTCTTGGAGGTTGGAGGCGTTGGTTTGCCACATCACTC
7358431 AGTAATGTATGGCGAGTGATCCGCGATGAGGACAAGGATGACGCCAATGATGATGACAACGATGA
708 AGTAATGTATGGCGAGTGATCCGCGATGAGGACAAGGATGACGCCAATGATGATGACAACGATGA
7358496 AGCTAAAGTCAAGATGAGATCATCAGGATGGTTGCCTCTAATTATTTCAAGTGTTAGCACTCCAA
773 AGCTAAAGTCAAGATGAGATCATCAGGATGGTTGCCTCTAATTATTTCAAGTGTTAGCACTCCAA
7358561 AGCTGTAGACATCACATTTCTTATTCACTTTCGTTGTGTAAGCTAGCTCTTTCAAAACATTGGTC
838 AGCTGTAGACATCACATTTCTTATTCACTTTCGTTGTGTAAGCTAGCTCTTTCAAAACATTGGTC
7358626 ATATATTGTTTTGAAAATATT
903 ATATATTGTTTTGAAAATATT
7358647 GTTTAAAACT
Statistics
Matches: 894, Mismatches: 27, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
923 31 0.03
924 249 0.28
925 1 0.00
926 9 0.01
927 1 0.00
928 28 0.03
929 575 0.64
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (923 bp):
TCTAAACCCTACCCTGCGACAGCCATCTAACATATGGCCTGCTATAGCAGAACCATTTCCTACTT
TGGATTCACATCTTTCTCCTTTCAATTCACCACCGTATCAAGGATTTCTGGTTTCACATCATTAG
CCAAGCTTTCCATTCATGACGACCGGTTCCTCGTTCGATTTAATATCTCTCTTCTCCTATTATCT
GAATGTCATGTCCCAAATCTCTAAAAACCCATCTCATGCAACATTATTTTGTTTTGCACAACCTT
CGAAAAAAAAATTTGGGTATTTTGCACAACCAATCTTTACATATTTTTTTTTCTCATTTTTCGCC
TGTTTGAGAGTGTACACTAATGAAGACGGCTCATTAAGGGCATTTTTATCTCAAAATATTTTCTA
ATGGCTAAAAACAGTTAAAAGTATTCTGCCGGTTATTTACAAAAACACGTTATTTATAAGGGCTT
AAAAAAATCCCCTTTTAAGAAAGTCTTAGTCATTGGGAGCTTCATTGAACAATGAGTTCTCCCAA
TTCTATAAAGGAGAATGGCTTGGAAAGTGGAGGCCATTGAGTTGTAAGTGCAAAACAAATATTTT
CCATGGTTGGTCGATTCTATGGATTTGCATGCAAACATGCAAACGCTACTTGTACAATAGAGACC
ACACCTTTTGCAACTCGACTTCTTGGAGGTTGGAGGCGTTGGTTTGCCACATCACTCAGTAATGT
ATGGCGAGTGATCCGCGATGAGGACAAGGATGACGCCAATGATGATGACAACGATGAAGCTAAAG
TCAAGATGAGATCATCAGGATGGTTGCCTCTAATTATTTCAAGTGTTAGCACTCCAAAGCTGTAG
ACATCACATTTCTTATTCACTTTCGTTGTGTAAGCTAGCTCTTTCAAAACATTGGTCATATATTG
TTTTGAAAATATT
Found at i:7359062 original size:48 final size:48
Alignment explanation
Indices: 7359006--7359111 Score: 194
Period size: 48 Copynumber: 2.2 Consensus size: 48
7358996 CTTTTCAATG
7359006 AACTCACAAACCAAGAAAGAGTATTTTGCATGGGAACAAAAACCATAT
1 AACTCACAAACCAAGAAAGAGTATTTTGCATGGGAACAAAAACCATAT
7359054 AACTCACAAACCAAGAAAGAGTATTTTGCATGGGAACAAAAACCATAT
1 AACTCACAAACCAAGAAAGAGTATTTTGCATGGGAACAAAAACCATAT
*
7359102 AGCTTCACAA
1 AAC-TCACAA
7359112 TATTTCAATG
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
48 50 0.89
49 6 0.11
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (48 bp):
AACTCACAAACCAAGAAAGAGTATTTTGCATGGGAACAAAAACCATAT
Found at i:7360791 original size:21 final size:19
Alignment explanation
Indices: 7360759--7360800 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
7360749 TTTACATTAG
*
7360759 TAAAAGTTAAAATGAAAAA
1 TAAAAGTTAAAAGGAAAAA
7360778 TAAATAGTTGAAAAGGAAAAA
1 TAAA-AGTT-AAAAGGAAAAA
7360799 TA
1 TA
7360801 TAGTATTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 12 0.60
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (19 bp):
TAAAAGTTAAAAGGAAAAA
Found at i:7364089 original size:12 final size:12
Alignment explanation
Indices: 7364072--7364100 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7364062 TATAAATAAT
7364072 TCAAATGTGGAA
1 TCAAATGTGGAA
7364084 TCAAATGTGGAA
1 TCAAATGTGGAA
7364096 TCAAA
1 TCAAA
7364101 GTTACATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (12 bp):
TCAAATGTGGAA
Found at i:7364381 original size:13 final size:14
Alignment explanation
Indices: 7364345--7364390 Score: 76
Period size: 14 Copynumber: 3.4 Consensus size: 14
7364335 ATGGCTACAT
7364345 TATAATGCAACAAG
1 TATAATGCAACAAG
*
7364359 TATGATGCAACAA-
1 TATAATGCAACAAG
7364372 TATAATGCAACAAG
1 TATAATGCAACAAG
7364386 TATAA
1 TATAA
7364391 AACTTTGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.24
Consensus pattern (14 bp):
TATAATGCAACAAG
Found at i:7367908 original size:64 final size:63
Alignment explanation
Indices: 7367795--7367936 Score: 185
Period size: 64 Copynumber: 2.2 Consensus size: 63
7367785 TGAATTCTCT
* * *** * *
7367795 TTTCCAACGGAATTTCTGTCTCAGTGTTTTCCAACGGAATTTTTGTTGGAAATCCGTTGGAAA
1 TTTCCAACGGATTTTCTGTCTCAGTGTATTCCAACGGAATTTCCCTTGGAAATCCGTCGAAAA
* *
7367858 TTTCCAACGGATTTTCTTTCTGCATTGTATTCCAACGGAATTTCCCTTGGAAATCCGTCGAAAA
1 TTTCCAACGGATTTTCTGTCT-CAGTGTATTCCAACGGAATTTCCCTTGGAAATCCGTCGAAAA
*
7367922 TTTCCAACAGATTTT
1 TTTCCAACGGATTTT
7367937 TAATGTGAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
63 19 0.28
64 49 0.72
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (63 bp):
TTTCCAACGGATTTTCTGTCTCAGTGTATTCCAACGGAATTTCCCTTGGAAATCCGTCGAAAA
Found at i:7371617 original size:34 final size:34
Alignment explanation
Indices: 7371540--7371617 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
7371530 GTTACACATC
* * * *
7371540 AAAGCTTCAATAGCAGATGTTACACGCCAAAGTT
1 AAAGCTTCAGTACCAGATGTTACACACCAAAGCT
* *
7371574 AAAGCTTCAGTACCAGATGTTATACACCAAGGCT
1 AAAGCTTCAGTACCAGATGTTACACACCAAAGCT
7371608 AAAGCTTCAG
1 AAAGCTTCAG
7371618 CACTAGATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (34 bp):
AAAGCTTCAGTACCAGATGTTACACACCAAAGCT
Found at i:7371638 original size:34 final size:34
Alignment explanation
Indices: 7371600--7371671 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
7371590 ATGTTATACA
* * *
7371600 CCAAGGCTAAAGCTTCAGCACTAGATATTGCATG
1 CCAAGGCCAAAGCTTCAACACTAGATATTACATG
*
7371634 CCAAGGCCAAAGCTTTAACACTAGATATTACATG
1 CCAAGGCCAAAGCTTCAACACTAGATATTACATG
7371668 CCAA
1 CCAA
7371672 AACTTTCTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (34 bp):
CCAAGGCCAAAGCTTCAACACTAGATATTACATG
Found at i:7380256 original size:86 final size:86
Alignment explanation
Indices: 7380111--7380288 Score: 329
Period size: 86 Copynumber: 2.1 Consensus size: 86
7380101 CAACAAGTAG
* *
7380111 TTTTATTCCAACAACACTTGTCACAAAATCTAAAAGAGGAAGGGAATGTGGATCCAACGTTGTTG
1 TTTTATACCAACAACACTTGTCACAAAATCTAAAAGAGGAAAGGAATGTGGATCCAACGTTGTTG
7380176 CAACTAGGGTGTAATCCAAGT
66 CAACTAGGGTGTAATCCAAGT
7380197 TTTTATACCAACAACACTTGTCACAAAATCTAAAAGAGGAAAGGAATGTGGATCCAACGTTGTTG
1 TTTTATACCAACAACACTTGTCACAAAATCTAAAAGAGGAAAGGAATGTGGATCCAACGTTGTTG
*
7380262 CAACTAGGGTGTACTCCAAGT
66 CAACTAGGGTGTAATCCAAGT
7380283 TTTTAT
1 TTTTAT
7380289 TGCATTAGGC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (86 bp):
TTTTATACCAACAACACTTGTCACAAAATCTAAAAGAGGAAAGGAATGTGGATCCAACGTTGTTG
CAACTAGGGTGTAATCCAAGT
Found at i:7381630 original size:7 final size:7
Alignment explanation
Indices: 7381618--7381651 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
7381608 TCCGAACTGC
7381618 TCTCTAG
1 TCTCTAG
7381625 TCTCTAG
1 TCTCTAG
7381632 TCTCTAG
1 TCTCTAG
*
7381639 TGTCTAG
1 TCTCTAG
*
7381646 TGTCTA
1 TCTCTA
7381652 CTTTACTCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (7 bp):
TCTCTAG
Found at i:7381782 original size:3 final size:3
Alignment explanation
Indices: 7381774--7381812 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
7381764 TTGAAACAGA
7381774 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7381813 GTACAAGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7401233 original size:6 final size:6
Alignment explanation
Indices: 7401222--7401246 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7401212 TAAATTACAA
7401222 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
7401247 GTGGAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:7401524 original size:3 final size:3
Alignment explanation
Indices: 7401508--7401545 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
7401498 AAACTTTTAC
*
7401508 TAA TAA TTAG TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7401546 CTCTTTGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 30 0.94
4 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:7405753 original size:29 final size:29
Alignment explanation
Indices: 7405717--7405970 Score: 255
Period size: 29 Copynumber: 8.7 Consensus size: 29
7405707 CTTTTACATG
*
7405717 TTTGTCTTAATTTAGATAAGAAAACATAT
1 TTTGTCTTAATTTAGACAAGAAAACATAT
*
7405746 TTTGTCTTAATTTAGACAAGAAAACAT-G
1 TTTGTCTTAATTTAGACAAGAAAACATAT
* ** *
7405774 TTTGTCTTAATCTAGACAAGAAAATGTGT
1 TTTGTCTTAATTTAGACAAGAAAACATAT
* *
7405803 TTTGTCTTAATTTAGACAAAAAAAACATGT
1 TTTGTCTTAATTTAGAC-AAGAAAACATAT
*
7405833 TTTGTCTTAATTTAGACAAGAAAACAT-G
1 TTTGTCTTAATTTAGACAAGAAAACATAT
** *
7405861 TCAGTCTTAATTTAAGAAAAGAAAA-ATATGT
1 TTTGTCTTAATTT-AGACAAGAAAACATA--T
* *
7405892 TTTGTCTTAATCTAGACAAGAAAATATA-
1 TTTGTCTTAATTTAGACAAGAAAACATAT
* * * * *
7405920 TTTGTCTCAATTTAGAGAAGATAAGATGT
1 TTTGTCTTAATTTAGACAAGAAAACATAT
*
7405949 TTTGTCTTAATTAAAGACAAGA
1 TTTGTCTTAATT-TAGACAAGA
7405971 GTTGTCTTAA
Statistics
Matches: 187, Mismatches: 29, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
28 59 0.32
29 72 0.39
30 43 0.23
31 13 0.07
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.37
Consensus pattern (29 bp):
TTTGTCTTAATTTAGACAAGAAAACATAT
Found at i:7405847 original size:87 final size:87
Alignment explanation
Indices: 7405717--7405959 Score: 310
Period size: 87 Copynumber: 2.8 Consensus size: 87
7405707 CTTTTACATG
*
7405717 TTTGTCTTAATTTAGATAAGAAAACATATTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTT
1 TTTGTCTTAATTTAGACAAGAAAACAT-TTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTT
* *
7405782 AATCT-AGACAAG-AAAATGTGT
65 AATCTAAGAAAAGAAAAATATGT
* **
7405803 TTTGTCTTAATTTAGACAAAAAAAACATGTTTTGTCTTAATTTAGACAAGAAAACATGTCAGTCT
1 TTTGTCTTAATTTAGAC-AAGAAAACAT-TTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCT
*
7405868 TAATTTAAGAAAAGAAAAATATGT
64 TAATCTAAGAAAAGAAAAATATGT
* * * * * * *
7405892 TTTGTCTTAATCTAGACAAGAAAATATATTTGTCTCAATTTAGAGAAGATAAGATGTTTTGTCTT
1 TTTGTCTTAATTTAGACAAGAAAACATTTTTGTCTTAATTTAGACAAGAAAACATG-TTTGTCTT
7405957 AAT
65 AAT
7405960 TAAAGACAAG
Statistics
Matches: 135, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
86 16 0.12
87 72 0.53
88 23 0.17
89 24 0.18
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (87 bp):
TTTGTCTTAATTTAGACAAGAAAACATTTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTA
ATCTAAGAAAAGAAAAATATGT
Found at i:7407407 original size:21 final size:21
Alignment explanation
Indices: 7407381--7407424 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7407371 CGTATGCTGC
7407381 TGGGCAACAATCACCCTACTG
1 TGGGCAACAATCACCCTACTG
*
7407402 TGGGCAACAATCACCCTGCTG
1 TGGGCAACAATCACCCTACTG
7407423 TG
1 TG
7407425 TGCTGTCCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.32, G:0.23, T:0.20
Consensus pattern (21 bp):
TGGGCAACAATCACCCTACTG
Done.