Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 22 of 30
Found at i:7845964 original size:13 final size:13
Alignment explanation
Indices: 7845946--7845970 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7845936 TTCTAGAAAA
7845946 TTTATAAAATCAT
1 TTTATAAAATCAT
7845959 TTTATAAAATCA
1 TTTATAAAATCA
7845971 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7851196 original size:5 final size:5
Alignment explanation
Indices: 7851188--7851220 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
7851178 ATCTAACCTG
7851188 ACTTA ACTTA AC-TA ACTTA ACTTA ACTTA ACTT
1 ACTTA ACTTA ACTTA ACTTA ACTTA ACTTA ACTT
7851221 GAGCCACGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (5 bp):
ACTTA
Found at i:7851207 original size:14 final size:15
Alignment explanation
Indices: 7851188--7851220 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7851178 ATCTAACCTG
7851188 ACTTAACTTAAC-TA
1 ACTTAACTTAACTTA
7851202 ACTTAACTTAACTTA
1 ACTTAACTTAACTTA
7851217 ACTT
1 ACTT
7851221 GAGCCACGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (15 bp):
ACTTAACTTAACTTA
Found at i:7851275 original size:15 final size:15
Alignment explanation
Indices: 7851255--7851300 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
7851245 TTCTTAAAAC
7851255 AACTTTAAAATCAAA
1 AACTTTAAAATCAAA
*
7851270 AACTTTAAAATCCAA
1 AACTTTAAAATCAAA
*
7851285 AGCTTTAAAATCAAA
1 AACTTTAAAATCAAA
7851300 A
1 A
7851301 TTTCTGATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.26
Consensus pattern (15 bp):
AACTTTAAAATCAAA
Found at i:7852518 original size:13 final size:13
Alignment explanation
Indices: 7852500--7852524 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7852490 TTCTAGAAAA
7852500 TTTATAAAATCAT
1 TTTATAAAATCAT
7852513 TTTATAAAATCA
1 TTTATAAAATCA
7852525 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7853974 original size:19 final size:19
Alignment explanation
Indices: 7853950--7853987 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7853940 CTGCCAAACC
*
7853950 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
7853969 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
7853988 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:7856020 original size:21 final size:21
Alignment explanation
Indices: 7855994--7856076 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
7855984 GTTCATGCAA
** *
7855994 TTCATGATGAAGACTGATGTT
1 TTCATGACAAAGACTGATGCT
7856015 TTCATGACAAAGACTGATGCT
1 TTCATGACAAAGACTGATGCT
* * *
7856036 TTCATGACAAAGAATGATACC
1 TTCATGACAAAGACTGATGCT
*
7856057 TTCATGGCAAAGACTGATGC
1 TTCATGACAAAGACTGATGC
7856077 CATCATTTAA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (21 bp):
TTCATGACAAAGACTGATGCT
Found at i:7876859 original size:35 final size:35
Alignment explanation
Indices: 7876784--7876866 Score: 105
Period size: 35 Copynumber: 2.3 Consensus size: 35
7876774 TCTTCTCTAT
* *
7876784 TTCTCCCCTCAAAAACGGCTGCAACCATCCAAGGAA
1 TTCTCCCCTC-AAAACGGCTGCAACCACCCAAGAAA
* *
7876820 TTCTCTCCTCAAACCGGCTGCAACCACCCAA-AAA
1 TTCTCCCCTCAAAACGGCTGCAACCACCCAAGAAA
7876854 CTTCTCCCCTCAA
1 -TTCTCCCCTCAA
7876867 CCAGCGATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
34 2 0.05
35 30 0.73
36 9 0.22
ACGTcount: A:0.30, C:0.41, G:0.10, T:0.19
Consensus pattern (35 bp):
TTCTCCCCTCAAAACGGCTGCAACCACCCAAGAAA
Found at i:7879623 original size:2 final size:2
Alignment explanation
Indices: 7879616--7879648 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7879606 CGCATTTCAC
7879616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7879649 ATAAATAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7885985 original size:23 final size:23
Alignment explanation
Indices: 7885938--7885986 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7885928 ATGCTCTTCC
*
7885938 CAATGCTACAACCTTAACTACCT
1 CAATGCTACAACCTTAACTAACT
* * *
7885961 CAATGCTACAATCTTGAGTAACT
1 CAATGCTACAACCTTAACTAACT
7885984 CAA
1 CAA
7885987 GGTCGCAACC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.27
Consensus pattern (23 bp):
CAATGCTACAACCTTAACTAACT
Found at i:7886324 original size:21 final size:20
Alignment explanation
Indices: 7886298--7886336 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7886288 ACTATTGTTA
*
7886298 AAGTAAATTTAAACATAAACG
1 AAGTAAAATTAAA-ATAAACG
7886319 AAGTAAAATTAAAATAAA
1 AAGTAAAATTAAAATAAA
7886337 ATAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.64, C:0.05, G:0.08, T:0.23
Consensus pattern (20 bp):
AAGTAAAATTAAAATAAACG
Found at i:7892510 original size:14 final size:13
Alignment explanation
Indices: 7892493--7892525 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
7892483 AGTTCCACCC
7892493 GAGAGGAAGAAAAA
1 GAGA-GAAGAAAAA
7892507 GAGA-AAGAAAAA
1 GAGAGAAGAAAAA
7892519 GAGAGAA
1 GAGAGAA
7892526 ATAAGGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.67
13 2 0.11
14 4 0.22
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (13 bp):
GAGAGAAGAAAAA
Found at i:7893224 original size:2 final size:2
Alignment explanation
Indices: 7893217--7893252 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7893207 AGATGCTGCC
*
7893217 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7893253 ATCATGTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7893853 original size:2 final size:2
Alignment explanation
Indices: 7893846--7893879 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7893836 TGTTTTAGAN
*
7893846 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7893880 CACACACACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7901829 original size:28 final size:28
Alignment explanation
Indices: 7901777--7901917 Score: 124
Period size: 29 Copynumber: 4.9 Consensus size: 28
7901767 TTTTATCTTT
7901777 AATTAAGATAAAAATATTTTATCTTGTCTA
1 AATTAAGATAAAAATA-TTT-TCTTGTCTA
* * *
7901807 AATTGAGATAAATATATTTTCTTATC-A
1 AATTAAGATAAAAATATTTTCTTGTCTA
* * *
7901834 AGATTAAGACAAAAAATATTTTTTTATCTTA
1 A-ATTAAGA-TAAAAATATTTTCTTGTC-TA
* *
7901865 AATTAAGACAAACATATTTT-TTGTCTA
1 AATTAAGATAAAAATATTTTCTTGTCTA
* *
7901892 AATTAAGATCAAATATGTTTTCTTGT
1 AATTAAGAT-AAAAATATTTTCTTGT
7901918 TTATTGTAAC
Statistics
Matches: 92, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
27 12 0.13
28 25 0.27
29 32 0.35
30 21 0.23
31 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (28 bp):
AATTAAGATAAAAATATTTTCTTGTCTA
Found at i:7901872 original size:30 final size:29
Alignment explanation
Indices: 7901767--7901904 Score: 106
Period size: 30 Copynumber: 4.7 Consensus size: 29
7901757 TTAAGACAAC
* *
7901767 TTTTATCTTTAATTAAGA-TAAAAATATTT
1 TTTTATC-TAAATTAAGACAAAAAATATTT
* * * *
7901796 TATCTTGTCTAAATTGAGA-TAAATATATTT
1 T-T-TTATCTAAATTAAGACAAAAAATATTT
*
7901826 TCTTATC-AAGATTAAGACAAAAAATATTT
1 TTTTATCTAA-ATTAAGACAAAAAATATTT
*
7901855 TTTTATCTTAAATTAAGAC-AAACATA-TT
1 TTTTATC-TAAATTAAGACAAAAAATATTT
*
7901883 TTTTGTCTAAATTAAGATCAAA
1 TTTTATCTAAATTAAGA-CAAA
7901905 TATGTTTTCT
Statistics
Matches: 89, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
27 12 0.13
28 19 0.21
29 24 0.27
30 28 0.31
31 6 0.07
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (29 bp):
TTTTATCTAAATTAAGACAAAAAATATTT
Found at i:7903846 original size:2 final size:2
Alignment explanation
Indices: 7903839--7903878 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
7903829 AATTTAATCC
7903839 AT AT AT AT AT AT A- AT AT A- AT AT AT AT AT A- AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7903877 AT
1 AT
7903879 TNNNNNNNNN
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
1 4 0.12
2 30 0.88
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7903855 original size:5 final size:5
Alignment explanation
Indices: 7903841--7903877 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
7903831 TTTAATCCAT
7903841 ATATA TATATA ATATA ATATA TATATA ATATA ATATA
1 ATATA -ATATA ATATA ATATA -ATATA ATATA ATATA
7903878 TTNNNNNNNN
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 20 0.67
6 10 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
ATATA
Found at i:7903862 original size:16 final size:16
Alignment explanation
Indices: 7903841--7903878 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
7903831 TTTAATCCAT
7903841 ATATATATATAATATA
1 ATATATATATAATATA
7903857 ATATATATATAATATA
1 ATATATATATAATATA
7903873 ATATAT
1 ATATAT
7903879 TNNNNNNNNN
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATATATATAATATA
Found at i:7909861 original size:12 final size:12
Alignment explanation
Indices: 7909841--7909882 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
7909831 CTTCGGTCAC
*
7909841 CTTCCTTTTCTT
1 CTTCTTTTTCTT
7909853 CTTCTTTTTC-T
1 CTTCTTTTTCTT
7909864 -TTCTTTTTCTT
1 CTTCTTTTTCTT
*
7909875 TTTCTTTT
1 CTTCTTTT
7909883 CTCCCTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 9 0.33
11 2 0.07
12 16 0.59
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
CTTCTTTTTCTT
Found at i:7909863 original size:6 final size:6
Alignment explanation
Indices: 7909846--7909882 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
7909836 GTCACCTTCC
*
7909846 TTTTCT TCTTCT TTTTC- -TTTCT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTT
7909883 CTCCCTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
4 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:7909868 original size:16 final size:16
Alignment explanation
Indices: 7909847--7909881 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7909837 TCACCTTCCT
7909847 TTTCTTCTTCTTTTTC
1 TTTCTTCTTCTTTTTC
*
7909863 TTTCTTTTTCTTTTTC
1 TTTCTTCTTCTTTTTC
7909879 TTT
1 TTT
7909882 TCTCCCTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTCTTCTTCTTTTTC
Found at i:7910762 original size:19 final size:19
Alignment explanation
Indices: 7910740--7910799 Score: 95
Period size: 19 Copynumber: 3.2 Consensus size: 19
7910730 TTAATATTTT
*
7910740 AATATTATTTTATTCATAA
1 AATAATATTTTATTCATAA
*
7910759 AATAATATTTTATTAATAA
1 AATAATATTTTATTCATAA
7910778 AATAATATTTTATTC-TAA
1 AATAATATTTTATTCATAA
7910796 AATA
1 AATA
7910800 TTCTTCTCAC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
18 7 0.18
19 31 0.82
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATATTTTATTCATAA
Found at i:7919220 original size:15 final size:15
Alignment explanation
Indices: 7919197--7919253 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
7919187 TTCGATCACC
7919197 TTTCTTTTCTTCTTCT
1 TTTC-TTTCTTCTTCT
7919213 TTTCTTTC-T-TT-T
1 TTTCTTTCTTCTTCT
7919225 TTT-TTTCTTCTCTCT
1 TTTCTTTCTTCT-TCT
* *
7919240 TTTCCTTCTCCTTC
1 TTTCTTTCTTCTTC
7919254 GACAAACTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
11 4 0.12
12 5 0.15
13 3 0.09
14 2 0.06
15 10 0.29
16 10 0.29
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTCTTTCTTCTTCT
Found at i:7920107 original size:19 final size:18
Alignment explanation
Indices: 7920059--7920120 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
7920049 ATTCCCTTAA
* *
7920059 TTAAAAAAATATTAATATT
1 TTAAAATAATATT-TTATT
*
7920078 TT--AATATTATTTTATT
1 TTAAAATAATATTTTATT
7920094 TATAAAATAATATTTTATT
1 T-TAAAATAATATTTTATT
7920113 TTAAAATA
1 TTAAAATA
7920121 TTCTTCTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 5 0.14
17 8 0.22
18 7 0.19
19 16 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTAAAATAATATTTTATT
Found at i:7920662 original size:32 final size:32
Alignment explanation
Indices: 7920619--7920679 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
7920609 ATCATTGTTG
7920619 TAGGTTGTGGTTGAGCCTT-CGAAAAACCACTT
1 TAGGTTGTGGTTGAG-CTTGCGAAAAACCACTT
* *
7920651 TAGGTTTTGGTTGAGCTTGTGAAAAACCA
1 TAGGTTGTGGTTGAGCTTGCGAAAAACCA
7920680 TTGTAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 3 0.12
32 23 0.88
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (32 bp):
TAGGTTGTGGTTGAGCTTGCGAAAAACCACTT
Found at i:7920663 original size:67 final size:67
Alignment explanation
Indices: 7920586--7920758 Score: 195
Period size: 67 Copynumber: 2.6 Consensus size: 67
7920576 TTTGTTGTTG
* *** * * *
7920586 GGTTTTGGTTGATCCCGTGAAAAATCATTGTTGTAGGTTGTGGTTGAGCCTTCGAAAAACCACTT
1 GGTTTTGGTTGATCTCGTGAAAAATCATTGTAAAAGGTTGTAGTCGAACCTTCGAAAAACCACTT
7920651 TA
66 TA
* * * *
7920653 GGTTTTGGTTGAGCTTGTGAAAAACCATTGTAAAAGGTTGTAGTCGAACCTTTGAAAAACCACTT
1 GGTTTTGGTTGATCTCGTGAAAAATCATTGTAAAAGGTTGTAGTCGAACCTTCGAAAAACCACTT
*
7920718 TG
66 TA
* * *
7920720 GGTTTTAGTTGATCTCGAT-AAAAATTATTGTGAAAGGTT
1 GGTTTTGGTTGATCTCG-TGAAAAATCATTGTAAAAGGTT
7920759 TTGGCTAAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
67 86 0.99
68 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (67 bp):
GGTTTTGGTTGATCTCGTGAAAAATCATTGTAAAAGGTTGTAGTCGAACCTTCGAAAAACCACTT
TA
Found at i:7922653 original size:53 final size:54
Alignment explanation
Indices: 7922578--7922731 Score: 184
Period size: 53 Copynumber: 2.8 Consensus size: 54
7922568 GCTATTATAT
* ** * * * *
7922578 AGCTATTAATGAAAAACCATGAATGTCCATTCCCTGAGGTGAATGTGACAAATG
1 AGCTACTAATGAAAAATTATGAATGTCCATTCCTTGAAGTGAATCTGACAAACG
* *
7922632 AGCTACTAAT-AAAAATTATGAATGTTCATTCCTTGAAGTAAATCTGACAAACG
1 AGCTACTAATGAAAAATTATGAATGTCCATTCCTTGAAGTGAATCTGACAAACG
*
7922685 AGCTACTAATAGAAAAATTATAAATCTGTCCATTCCTTGAAGTGAAT
1 AGCTACTAAT-GAAAAATTATGAA--TGTCCATTCCTTGAAGTGAAT
7922732 ACGATATCAT
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 45 0.54
54 9 0.11
55 11 0.13
57 19 0.23
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (54 bp):
AGCTACTAATGAAAAATTATGAATGTCCATTCCTTGAAGTGAATCTGACAAACG
Found at i:7923008 original size:18 final size:18
Alignment explanation
Indices: 7922976--7923010 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7922966 GAAGTGAAAA
* *
7922976 ACCCATCATATGTGGATC
1 ACCCATCAAAAGTGGATC
7922994 ACCCATCAAAAGTGGAT
1 ACCCATCAAAAGTGGAT
7923011 GTATACTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (18 bp):
ACCCATCAAAAGTGGATC
Found at i:7936951 original size:29 final size:28
Alignment explanation
Indices: 7936918--7937016 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 28
7936908 CTGGTTCTTG
*
7936918 TGTACCTATTCACATACACATTCTTCTCT
1 TGTACCTATTCACGTACAC-TTCTTCTCT
7936947 TGTACCTATTCACGTACAGCTTCTTCTCT
1 TGTACCTATTCACGTACA-CTTCTTCTCT
* * * * *
7936976 TATATCTGTTCACGTACCGCTTCTTTTCT
1 TGTACCTATTCACGTA-CACTTCTTCTCT
*
7937005 TGTACCTTTTCA
1 TGTACCTATTCA
7937017 TATATACCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
29 57 0.97
30 2 0.03
ACGTcount: A:0.18, C:0.29, G:0.08, T:0.44
Consensus pattern (28 bp):
TGTACCTATTCACGTACACTTCTTCTCT
Found at i:7944406 original size:2 final size:2
Alignment explanation
Indices: 7944399--7944429 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7944389 ATACATACAT
7944399 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
7944430 TAGCTTATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7944682 original size:2 final size:2
Alignment explanation
Indices: 7944675--7944782 Score: 159
Period size: 2 Copynumber: 54.5 Consensus size: 2
7944665 ATCTGCTTGA
*
7944675 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7944717 AT AT AT AT ANT CAT AT AT AT AT AT AT AT GT AT AT AT AT AT AT A-
1 AT AT AT AT A-T -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7944760 AT AT AT AT -T AT -T AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7944783 AATTCTCTTT
Statistics
Matches: 97, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
1 3 0.03
2 91 0.94
3 2 0.02
4 1 0.01
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7944917 original size:13 final size:13
Alignment explanation
Indices: 7944878--7944917 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7944868 AACAAGCAAG
7944878 AAAAAAAAATACA
1 AAAAAAAAATACA
* *
7944891 AATAAGAAATACA
1 AAAAAAAAATACA
*
7944904 AAAAAAAAAAACA
1 AAAAAAAAATACA
7944917 A
1 A
7944918 CAAGAAGAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.82, C:0.07, G:0.03, T:0.07
Consensus pattern (13 bp):
AAAAAAAAATACA
Found at i:7945798 original size:29 final size:29
Alignment explanation
Indices: 7945706--7945803 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
7945696 TTCCCTTTTT
* * * * *
7945706 ACCTTGTTCTCGTGTACCTATTCACTTAC
1 ACCTTTTTCTCTTATACCTGTTCACGTAC
* * *
7945735 AGCTTCTTCTTTTATACCTGTTCACGTAC
1 ACCTTTTTCTCTTATACCTGTTCACGTAC
* *
7945764 AACTTTTTCTCTTATACCTGTTCACGTAT
1 ACCTTTTTCTCTTATACCTGTTCACGTAC
7945793 ACC-TTTTCTCT
1 ACCTTTTTCTCT
7945804 GTTTCCTTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
28 8 0.14
29 49 0.86
ACGTcount: A:0.17, C:0.29, G:0.08, T:0.46
Consensus pattern (29 bp):
ACCTTTTTCTCTTATACCTGTTCACGTAC
Found at i:7947878 original size:21 final size:21
Alignment explanation
Indices: 7947840--7947880 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7947830 ATGATTAGAA
7947840 TTTGAAATTCTAACTTGAAAG
1 TTTGAAATTCTAACTTGAAAG
* * *
7947861 TTTGAGATTTTAATTTGAAA
1 TTTGAAATTCTAACTTGAAA
7947881 TTATAAGAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (21 bp):
TTTGAAATTCTAACTTGAAAG
Found at i:7948455 original size:39 final size:42
Alignment explanation
Indices: 7948398--7948479 Score: 107
Period size: 39 Copynumber: 2.0 Consensus size: 42
7948388 ACGTACACGT
**
7948398 ACACGTTTAATACTCGTGT-AACA-A-GACACGACACGATTA
1 ACACGTTTAATAAACGTGTCAACATACGACACGACACGATTA
* *
7948437 ACACGTTTATTAAACGTGTCAATATACGACACGACACGATTA
1 ACACGTTTAATAAACGTGTCAACATACGACACGACACGATTA
7948479 A
1 A
7948480 TAACATGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 16 0.44
40 3 0.08
41 1 0.03
42 16 0.44
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (42 bp):
ACACGTTTAATAAACGTGTCAACATACGACACGACACGATTA
Found at i:7948500 original size:9 final size:9
Alignment explanation
Indices: 7948488--7948518 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7948478 AATAACATGT
7948488 TTAACACGA
1 TTAACACGA
*
7948497 TTAACACGT
1 TTAACACGA
7948506 TTAACACGA
1 TTAACACGA
7948515 TTAA
1 TTAA
7948519 ATAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (9 bp):
TTAACACGA
Found at i:7948507 original size:18 final size:18
Alignment explanation
Indices: 7948480--7948518 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
7948470 ACACGATTAA
*
7948480 TAACATGTTTAACACGAT
1 TAACACGTTTAACACGAT
7948498 TAACACGTTTAACACGAT
1 TAACACGTTTAACACGAT
7948516 TAA
1 TAA
7948519 ATAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (18 bp):
TAACACGTTTAACACGAT
Found at i:7966338 original size:171 final size:170
Alignment explanation
Indices: 7965952--7967331 Score: 1570
Period size: 171 Copynumber: 8.1 Consensus size: 170
7965942 GGTCGCGACA
* * * * *
7965952 TATAATCTGATTATTGATTTTATGCTGAATTTTCTTACATTTTTTGTTAAATCAGATTATAATTT
1 TATAATCTCATTATTGATTTTAAGTTGAATTTT-TTACATTTTTTGTTAAAACAGATTATAATTG
* * * *
7966017 AATGTTTGCTTCGAGAAACGTGATGCGAAAGCCATCGATTGACGAGAAAAGTACATTTATAGTCA
65 AATGTTTACTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCA
* *
7966082 CTTATGCCTTCGAAAGCCTTATTACTCACTTAAAATGGTTT
130 CTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
* * * * * *
7966123 TATAATCTGATTATTGATTTTATGCTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTT
1 TATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAATTG
* * * * *
7966188 AATGTTTACTTCGAGAAACGTGAGGCGAAAGGCATCCATTGACAAG-AAA-TCCATTTACAGTTA
65 AATGTTTACTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCA
* *
7966251 GTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTT
130 CTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
*
7966292 TATAATCTCATTATTGATTTTAAGTTGAATTTGTTTACATATTTTTGTTAAAACAGGTTATAATT
1 TATAATCTCATTATTGATTTTAAGTTGAATTT-TTTACAT-TTTTTGTTAAAACAGATTATAATT
* * * * * * *
7966357 GAATGTTCACCTCGGGAAACGT-AAGGCTCAAACCCTTCG-TT-A-ATAGAAAAAGTCCATCTAT
64 GAATGTTTACTTCGAGAAACGTGAA-GC-GAAAGCCATCGATTGACA-AG-AAAAGTCCATTTAT
** * * * * *
7966418 AGTCGTTCATGCCTTCAAAAGCTTTATTAGTCGCTTAAAATGG-TT
125 AGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
* * ** *
7966463 TATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAGATTTTAAGTTAAGAA-AGGTTATAATT
1 TATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAA-AACAGATTATAATT
* * *
7966527 GAATGTTTACCTCGAGAAGCGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTAT-GTC
64 GAATGTTTACTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTC
7966591 ACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
129 ACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
* * * * * *
7966633 TGTATTCCCATTATTGATTTTATGTTGAATTTTCTCACATTTTTTGTTAAAACATATTATAATTG
1 TATAATCTCATTATTGATTTTAAGTTGAATTTT-TTACATTTTTTGTTAAAACAGATTATAATTG
* * * * * * *
7966698 AATGTTTGCCTT-GGGAAACTTGAAGCAAAAGCCATCGATTGACAAGAAAAATCCATTTACAATC
65 AATGTTT-ACTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTC
* * * *
7966762 AGTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGATTT
129 ACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
*
7966804 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGATTATAATTA
1 TATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAATTG
* * * * * * * * * *
7966869 AATGTTCACCTC-AGGAAACGTGAGGCTAAAACCCTCCG-TTAATAGGAAAAGTCTATTTATAGT
65 AATGTTTACTTCGA-GAAACGTGAAGCGAAAGCCAT-CGATTGACAAGAAAAGTCCATTTATAGT
* * * *
7966932 CACTCATGCCTTC-AGAAGCCTTATTAGTCGCTTAAAATGGCTT
128 CACTCATGCCTTCGA-AAGCCTTATTACTCACTTTAAATGGTTT
* * *
7966975 TATAATCTCATAATTGATTTTAAGTAGAATTTTTTCACATTTTTTGTTAAGAA-AGGTTATAATT
1 TATAATCTCATTATTGATTTTAAGTTGAATTTTTT-ACATTTTTTGTTAA-AACAGATTATAATT
** *
7967039 GAACATTTACCTT-GAGAAACGTGAAGCGAAACCCATCGATTGACAAGAAAAGTCCATTTATAGT
64 GAATGTTTA-CTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGT
* * *
7967103 AACTCATGCCTTCAAAAGCCATATTACTCACTTTAAATGGTTT
128 CACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
* * * * *
7967146 TAAAATCCCATTATGGATTTTATGTTGAATTTTCTTACATTTTTTATTAAAAC-GAATTATAATT
1 TATAATCTCATTATTGATTTTAAGTTGAATTTT-TTACATTTTTTGTTAAAACAG-ATTATAATT
* *
7967210 GAATGTTTGTCTT-GAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAATTCCATTTATAGT
64 GAATGTTT-ACTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGT
*
7967274 CAATCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
128 CACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
*
7967317 TATAATCTGATTATT
1 TATAATCTCATTATT
7967332 TGTCACGACC
Statistics
Matches: 1018, Mismatches: 156, Indels: 70
0.82 0.13 0.06
Matches are distributed among these distances:
168 4 0.00
169 133 0.13
170 211 0.21
171 605 0.59
172 65 0.06
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (170 bp):
TATAATCTCATTATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAATTGA
ATGTTTACTTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCAC
TCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTT
Found at i:7979380 original size:11 final size:11
Alignment explanation
Indices: 7979355--7979393 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7979345 AGTTTTTGGG
* *
7979355 TTTAAAGCTGG
1 TTTAAAGTTGT
7979366 TTTAAAGTTGT
1 TTTAAAGTTGT
*
7979377 TTTAACGTTGT
1 TTTAAAGTTGT
7979388 TTTAAA
1 TTTAAA
7979394 ATTTACAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (11 bp):
TTTAAAGTTGT
Found at i:7979453 original size:5 final size:5
Alignment explanation
Indices: 7979423--7979452 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
7979413 TCCCAAGTCC
*
7979423 AGTTA AGTTA AGTTA AGTTA AGTTA GGTTA
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA
7979453 GATTGAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (5 bp):
AGTTA
Found at i:7992077 original size:27 final size:27
Alignment explanation
Indices: 7992071--7992279 Score: 231
Period size: 27 Copynumber: 7.4 Consensus size: 27
7992061 GAGTTTTCAT
* *
7992071 GCTTGGAACACCCTTGGGCGCTTCCGC
1 GCTTGGAACACCCTTAGGCGCTTCCAC
* *
7992098 GCTTGGAACACCCTT-GTGCGTTTCCAT
1 GCTTGGAACACCCTTAG-GCGCTTCCAC
*
7992125 GCTTAGAACACCCTTAGGCGCTTCCAC
1 GCTTGGAACACCCTTAGGCGCTTCCAC
*
7992152 GCTTGGAACACCCTTAGGCACTTCCAC
1 GCTTGGAACACCCTTAGGCGCTTCCAC
*
7992179 GCTTGGAACACCCTTAGGCACTTCCAC
1 GCTTGGAACACCCTTAGGCGCTTCCAC
* *
7992206 GCTTGGAATACCCTTGGGTGCTTCCGCGCTTCCAC
1 GCTTGGAACACCCTT---AG-----GCGCTTCCAC
* *
7992241 GCTTGGAACACCCTTGGGTGCTTCCAC
1 GCTTGGAACACCCTTAGGCGCTTCCAC
7992268 GCTTGGAACACC
1 GCTTGGAACACC
7992280 TTGGGGCACT
Statistics
Matches: 158, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
26 1 0.01
27 131 0.83
28 1 0.01
30 1 0.01
32 1 0.01
35 23 0.15
ACGTcount: A:0.17, C:0.35, G:0.23, T:0.25
Consensus pattern (27 bp):
GCTTGGAACACCCTTAGGCGCTTCCAC
Found at i:7992134 original size:54 final size:53
Alignment explanation
Indices: 7992047--7992222 Score: 235
Period size: 54 Copynumber: 3.3 Consensus size: 53
7992037 CTTTTGCACC
* * * *
7992047 TGGAACACCCCTTGGAGTTTTCATGCTTGGAACACCCTTGGGCGCTTCCGCGCT
1 TGGAACA-CCCTTGGCGTTTCCATGCTTGGAACACCCTTAGGCGCTTCCACGCT
*
7992101 TGGAACACCCTTGTGCGTTTCCATGCTTAGAACACCCTTAGGCGCTTCCACGCT
1 TGGAACACCCTTG-GCGTTTCCATGCTTGGAACACCCTTAGGCGCTTCCACGCT
** * *
7992155 TGGAACACCCTTAGGCACTTCCACGCTTGGAACACCCTTAGGCACTTCCACGCT
1 TGGAACACCCTT-GGCGTTTCCATGCTTGGAACACCCTTAGGCGCTTCCACGCT
*
7992209 TGGAATACCCTTGG
1 TGGAACACCCTTGG
7992223 GTGCTTCCGC
Statistics
Matches: 109, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
53 8 0.07
54 100 0.92
55 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.26
Consensus pattern (53 bp):
TGGAACACCCTTGGCGTTTCCATGCTTGGAACACCCTTAGGCGCTTCCACGCT
Found at i:7992238 original size:35 final size:35
Alignment explanation
Indices: 7992199--7992271 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
7992189 CCCTTAGGCA
* *
7992199 CTTCCACGCTTGGAATACCCTTGGGTGCTTCCGCG
1 CTTCCACGCTTGGAACACCCTTGGGTGCTTCCACG
7992234 CTTCCACGCTTGGAACACCCTTGGGTGCTTCCACG
1 CTTCCACGCTTGGAACACCCTTGGGTGCTTCCACG
7992269 CTT
1 CTT
7992272 GGAACACCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.12, C:0.36, G:0.23, T:0.29
Consensus pattern (35 bp):
CTTCCACGCTTGGAACACCCTTGGGTGCTTCCACG
Found at i:7999654 original size:2 final size:2
Alignment explanation
Indices: 7999647--7999685 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
7999637 TGTTGTGTAC
7999647 AT AT AT AT A- AT AT AT AT AT AT AT A- AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7999686 GTTAATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.09
2 31 0.91
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8000711 original size:28 final size:28
Alignment explanation
Indices: 8000671--8000725 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
8000661 TAGTAAGGCC
8000671 CTAAGGCCGGATGGATTTAACTTTTGTT
1 CTAAGGCCGGATGGATTTAACTTTTGTT
8000699 CTAAGGCCGGATGGATTTAACTTTTGT
1 CTAAGGCCGGATGGATTTAACTTTTGT
8000726 ATCAAAAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (28 bp):
CTAAGGCCGGATGGATTTAACTTTTGTT
Found at i:8001882 original size:100 final size:98
Alignment explanation
Indices: 8001680--8001883 Score: 302
Period size: 100 Copynumber: 2.1 Consensus size: 98
8001670 AGTATATAAA
* *
8001680 AATTTAAAAATATGAAAATAAAAAATAATTAATAAAATTACTTGTTTTCTCACTTTCTTAATTAT
1 AATTCAAAAATATGAAAATAAAAAATAATTAATAAAATTACTTGTTTTCTCACTTCCTTAATTA-
* * * *
8001745 GTGTCTAATAAATTTAAATTTTTTATTACTTTTC
65 GTATCTAATAAATCTAAATTTTTTATCACATTTC
8001779 AATTCNAAAAATTATGAAAATAAAAAATATATTAATAAAATTACTTGTTTTCTCACTTCCTTAAT
1 AATTC-AAAAA-TATGAAAATAAAAAATA-ATTAATAAAATTACTTGTTTTCTCACTTCCTTAAT
*
8001844 TA-TATCTAATAAATCTCAATTTTTTATCACATTTC
63 TAGTATCTAATAAATCTAAATTTTTTATCACATTTC
8001879 AATTC
1 AATTC
8001884 CTACAATGCT
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
99 4 0.04
100 38 0.40
101 17 0.18
102 36 0.38
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (98 bp):
AATTCAAAAATATGAAAATAAAAAATAATTAATAAAATTACTTGTTTTCTCACTTCCTTAATTAG
TATCTAATAAATCTAAATTTTTTATCACATTTC
Found at i:8010162 original size:28 final size:29
Alignment explanation
Indices: 8010122--8010178 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
8010112 TATTCCTATG
* *
8010122 TCTTTTCTTTCTCTTTC-TTTTCTTTTTA
1 TCTTTTCTTTCTCATTCATTTTATTTTTA
8010150 TCTTGTTC-TTCTCATTCATTTTATTTTTA
1 TCTT-TTCTTTCTCATTCATTTTATTTTTA
8010179 AACTAGACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (29 bp):
TCTTTTCTTTCTCATTCATTTTATTTTTA
Found at i:8014505 original size:22 final size:22
Alignment explanation
Indices: 8014439--8014506 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 22
8014429 GCGTGATTAG
* * *
8014439 TTTTTAAGTATTACATTACTAA
1 TTTTTAAGTATTGCATAACTGA
* * *
8014461 TTTTTAGGTATTGCATGATTGA
1 TTTTTAAGTATTGCATAACTGA
*
8014483 TTTTTAAGTATTGCGTAACTGA
1 TTTTTAAGTATTGCATAACTGA
8014505 TT
1 TT
8014507 GATATGACAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (22 bp):
TTTTTAAGTATTGCATAACTGA
Found at i:8018903 original size:24 final size:24
Alignment explanation
Indices: 8018876--8018922 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8018866 ATATGTCATG
8018876 ATGTTACACGTCAT-GTATAAAAAT
1 ATGTTACACGTCATGGT-TAAAAAT
* *
8018900 ATGTTATATGTCATGGTTAAAAA
1 ATGTTACACGTCATGGTTAAAAA
8018923 AAGTTGTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (24 bp):
ATGTTACACGTCATGGTTAAAAAT
Found at i:8019064 original size:53 final size:49
Alignment explanation
Indices: 8018969--8019076 Score: 112
Period size: 53 Copynumber: 2.1 Consensus size: 49
8018959 TGTTGTACAT
*
8018969 CATGTACAAAAACATGTTACAAGCCATTAAAAAATATTGTTGTTGTTACACGC
1 CATGTACAAAAACATATTACAAGCCATTAAAAAATA----TGTTGTTACACGC
* *
8019022 CATGTACAAAAACATATTACACGTCATGGTTAAAAAA-A-GTTGTTACACGC
1 CATGTACAAAAACATATTACAAGCCA---TTAAAAAATATGTTGTTACACGC
8019072 CATGT
1 CATGT
8019077 TGAAAAAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
50 17 0.35
53 23 0.47
55 1 0.02
56 8 0.16
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.29
Consensus pattern (49 bp):
CATGTACAAAAACATATTACAAGCCATTAAAAAATATGTTGTTACACGC
Found at i:8019067 original size:26 final size:27
Alignment explanation
Indices: 8019038--8019092 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
8019028 CAAAAACATA
*
8019038 TTACACGTCATGGTT-AAAAAAA-GTTG
1 TTACACGCCAT-GTTGAAAAAAATGTTG
8019064 TTACACGCCATGTTGAAAAAAATGTTG
1 TTACACGCCATGTTGAAAAAAATGTTG
8019091 TT
1 TT
8019093 GTTATACATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 3 0.12
26 17 0.65
27 6 0.23
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (27 bp):
TTACACGCCATGTTGAAAAAAATGTTG
Found at i:8019089 original size:24 final size:23
Alignment explanation
Indices: 8019012--8019089 Score: 77
Period size: 26 Copynumber: 3.2 Consensus size: 23
8019002 ATATTGTTGT
8019012 TGTTACACGCCATG-TACAAAAACA
1 TGTTACACGCCATGTTA-AAAAA-A
* *
8019036 TATTACACGTCATGGTTAAAAAAA
1 TGTTACACGCCAT-GTTAAAAAAA
8019060 GTTGTTACACGCCATGTTGAAAAAAA
1 --TGTTACACGCCATGTT-AAAAAAA
8019086 TGTT
1 TGTT
8019090 GTTGTTATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
24 16 0.36
25 9 0.20
26 20 0.44
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (23 bp):
TGTTACACGCCATGTTAAAAAAA
Found at i:8019096 original size:30 final size:29
Alignment explanation
Indices: 8019038--8019141 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
8019028 CAAAAACATA
8019038 TTACACGTCATGGTT-AAAAAA-A--GTTG
1 TTACACGTCAT-GTTAAAAAAATATTGTTG
* *
8019064 TTACACGCCATGTTGAAAAAAATGTTGTTG
1 TTACACGTCATGTT-AAAAAAATATTGTTG
* *
8019094 TTATACATCATGTTAAAAAAATATTGTTG
1 TTACACGTCATGTTAAAAAAATATTGTTG
*
8019123 TTACACGTCATGTTCAAAA
1 TTACACGTCATGTTAAAAA
8019142 TGTTTGTGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.05
26 10 0.16
27 6 0.09
29 30 0.47
30 15 0.23
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (29 bp):
TTACACGTCATGTTAAAAAAATATTGTTG
Found at i:8019111 original size:27 final size:28
Alignment explanation
Indices: 8019060--8019154 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 28
8019050 GTTAAAAAAA
**
8019060 GTTGTTACACGCCATGTTGAAAAAAATGTT
1 GTTGTTACACATCATGTT--AAAAAATGTT
* *
8019090 GTTGTTATACATCATGTTAAAAAAATATT
1 GTTGTTACACATCATGTT-AAAAAATGTT
* *
8019119 GTTGTTACACGTCATGTT-CAAAATGTT
1 GTTGTTACACATCATGTTAAAAAATGTT
8019146 -TGTGTTACA
1 GT-TGTTACA
8019155 TTTTAATACC
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 14 0.25
29 26 0.46
30 15 0.27
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.39
Consensus pattern (28 bp):
GTTGTTACACATCATGTTAAAAAATGTT
Found at i:8022116 original size:19 final size:19
Alignment explanation
Indices: 8022092--8022129 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8022082 CTTCCAAACC
*
8022092 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
8022111 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
8022130 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:8022599 original size:23 final size:23
Alignment explanation
Indices: 8022563--8022606 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
8022553 TGGTGTTTTC
8022563 AAAGCGTAAGAGAGAGAAATCTG
1 AAAGCGTAAGAGAGAGAAATCTG
8022586 AAAGCGTGAA-AGAGAGAAATC
1 AAAGCGT-AAGAGAGAGAAATC
8022607 GGGGAGCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.50, C:0.09, G:0.30, T:0.11
Consensus pattern (23 bp):
AAAGCGTAAGAGAGAGAAATCTG
Found at i:8026927 original size:20 final size:21
Alignment explanation
Indices: 8026894--8026945 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
8026884 TCTCAGGTTG
*
8026894 AGAA-GTCTCGATACATAT-A
1 AGAATGTCTCAATACATATGA
*
8026913 AGGATGTCTCAATACATATGA
1 AGAATGTCTCAATACATATGA
8026934 AGAATGTCTCAA
1 AGAATGTCTCAA
8026946 AACTTTTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 13 0.46
21 12 0.43
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (21 bp):
AGAATGTCTCAATACATATGA
Found at i:8029081 original size:20 final size:20
Alignment explanation
Indices: 8029040--8029081 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8029030 AAAAGTTAAA
* *
8029040 AAAATTCATTTAAATTAGTT
1 AAAACTCATTTAAATTACTT
8029060 AAAACTCATTT-AATTGACTT
1 AAAACTCATTTAAATT-ACTT
8029080 AA
1 AA
8029082 GTTAGTGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (20 bp):
AAAACTCATTTAAATTACTT
Found at i:8030803 original size:2 final size:2
Alignment explanation
Indices: 8030796--8030822 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8030786 ACTTGGAAGT
8030796 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8030823 GGGATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8032014 original size:41 final size:41
Alignment explanation
Indices: 8031957--8032039 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
8031947 TGCAGCTAAG
8031957 TAGGAACTTATATTGGAGAAATGATACTTGTAAATACCTTA
1 TAGGAACTTATATTGGAGAAATGATACTTGTAAATACCTTA
8031998 TAGGAACTTATATTGGAGAAATGATACTTGTAAATACCTTA
1 TAGGAACTTATATTGGAGAAATGATACTTGTAAATACCTTA
8032039 T
1 T
8032040 CCCTTATGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (41 bp):
TAGGAACTTATATTGGAGAAATGATACTTGTAAATACCTTA
Found at i:8032437 original size:74 final size:70
Alignment explanation
Indices: 8032374--8032564 Score: 193
Period size: 81 Copynumber: 2.6 Consensus size: 70
8032364 TAAATTGGAT
* ** * *
8032374 CAATTAAAATTTAGTTATTGGTCATCCGATTTATCTCTAAATAAATCAAGGTAATATTCATATTT
1 CAATCAAAATTTAACTATTGATCATCCAATTTATCTCTAAATAAATCAAGGTAATATTCATATTT
8032439 TTGAC
66 TTGAC
**
8032444 CAATCAAAATTTAACTATTGATCATTTAATTTATCTCTAAATAAATCAAGGTAATTTAGGGATAA
1 CAATCAAAATTTAACTATTGATCATCCAATTTATCTCTAAATAAATC------A---A-GG-TAA
*
8032509 TATTCAAATTTTTGAC
55 TATTCATATTTTTGAC
* *
8032525 CAATCAAAATTTAACTATTGGTCATCTAATTTATCTCTAA
1 CAATCAAAATTTAACTATTGATCATCCAATTTATCTCTAA
8032565 TAATTATGAT
Statistics
Matches: 100, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
70 40 0.40
76 1 0.01
79 1 0.01
80 2 0.02
81 56 0.56
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.40
Consensus pattern (70 bp):
CAATCAAAATTTAACTATTGATCATCCAATTTATCTCTAAATAAATCAAGGTAATATTCATATTT
TTGAC
Found at i:8032908 original size:25 final size:25
Alignment explanation
Indices: 8032880--8033068 Score: 155
Period size: 25 Copynumber: 7.1 Consensus size: 25
8032870 TTCTAAAGTG
* *
8032880 AAGATATCAAGTGAAGTTCATAATC
1 AAGATATCAAGTGAAGTTCGTGATC
8032905 AAGATATCAAGCGGTAACGAAGTTCGTGATC
1 AAGATATCAA---GT---GAAGTTCGTGATC
*
8032936 AAGAAATCAAGTGAAGTTCGTGATC
1 AAGATATCAAGTGAAGTTCGTGATC
*
8032961 AAGATATCAAGCGGCAGTGAAGTTCGTAATC
1 AAGATATC-A-----AGTGAAGTTCGTGATC
*
8032992 AAGATATCAAGTGAAGTTCGCGATC
1 AAGATATCAAGTGAAGTTCGTGATC
* * *
8033017 AAGGTATCAAGCGAAGTTTGTGATC
1 AAGATATCAAGTGAAGTTCGTGATC
* * *
8033042 AGGATATCAAAT-ATAGTTTGTGATC
1 AAGATATCAAGTGA-AGTTCGTGATC
8033067 AA
1 AA
8033069 TACCAAGTCG
Statistics
Matches: 135, Mismatches: 16, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
24 1 0.01
25 85 0.63
26 1 0.01
28 4 0.03
30 1 0.01
31 43 0.32
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (25 bp):
AAGATATCAAGTGAAGTTCGTGATC
Found at i:8032937 original size:31 final size:29
Alignment explanation
Indices: 8032892--8033002 Score: 113
Period size: 31 Copynumber: 3.8 Consensus size: 29
8032882 GATATCAAGT
*
8032892 GAAGTTCATAATCAAGATATCAAGCGGTAA
1 GAAGTTCGTAATCAAGATATCAAGCGGT-A
* *
8032922 CGAAGTTCGTGATCAAGAAATCAA---GT-
1 -GAAGTTCGTAATCAAGATATCAAGCGGTA
* *
8032948 GAAGTTCGTGATCAAGATATCAAGCGGCA
1 GAAGTTCGTAATCAAGATATCAAGCGGTA
8032977 GTGAAGTTCGTAATCAAGATATCAAG
1 --GAAGTTCGTAATCAAGATATCAAG
8033003 TGAAGTTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
25 22 0.32
28 3 0.04
31 43 0.63
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (29 bp):
GAAGTTCGTAATCAAGATATCAAGCGGTA
Found at i:8032971 original size:56 final size:56
Alignment explanation
Indices: 8032880--8033029 Score: 219
Period size: 56 Copynumber: 2.7 Consensus size: 56
8032870 TTCTAAAGTG
* * * *
8032880 AAGATATCAAGTGAAGTTCATAATCAAGATATCAAGCGGTAACGAAGTTCGTGATC
1 AAGATATCAAGTGAAGTTCGTGATCAAGATATCAAGCGGCAACGAAGTTCGTAATC
* **
8032936 AAGAAATCAAGTGAAGTTCGTGATCAAGATATCAAGCGGCAGTGAAGTTCGTAATC
1 AAGATATCAAGTGAAGTTCGTGATCAAGATATCAAGCGGCAACGAAGTTCGTAATC
* *
8032992 AAGATATCAAGTGAAGTTCGCGATCAAGGTATCAAGCG
1 AAGATATCAAGTGAAGTTCGTGATCAAGATATCAAGCG
8033030 AAGTTTGTGA
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 84 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (56 bp):
AAGATATCAAGTGAAGTTCGTGATCAAGATATCAAGCGGCAACGAAGTTCGTAATC
Found at i:8033129 original size:79 final size:79
Alignment explanation
Indices: 8033033--8033189 Score: 217
Period size: 79 Copynumber: 2.0 Consensus size: 79
8033023 TCAAGCGAAG
* *
8033033 TTTGTGATCAGGATATCAAATATAGTTTGTGATCAATACCAAGTCGTGAAGACCCTTGAAGCAAA
1 TTTGTAATCAGGATATCAAATATAGTTTGTGATCAAGACCAAGTCGTGAAGACCCTTGAAGCAAA
8033098 GATATCAAATATAA
66 GATATCAAATATAA
* * * ** *
8033112 TTTGTAATCAAGG-TATCAAGTATAGTTTGTGATCGAGATCAAGTCGTGAAGATGCTTGAAGCGA
1 TTTGTAATC-AGGATATCAAATATAGTTTGTGATCAAGACCAAGTCGTGAAGACCCTTGAAGCAA
*
8033176 AGTTATCAAATATA
65 AGATATCAAATATA
8033190 GTTCGTGATC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 65 0.96
80 3 0.04
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (79 bp):
TTTGTAATCAGGATATCAAATATAGTTTGTGATCAAGACCAAGTCGTGAAGACCCTTGAAGCAAA
GATATCAAATATAA
Found at i:8033207 original size:54 final size:54
Alignment explanation
Indices: 8033125--8033258 Score: 153
Period size: 54 Copynumber: 2.5 Consensus size: 54
8033115 GTAATCAAGG
* * * * * *
8033125 TATCAAGTATAGTTTGTGATCGAGATCAAGTCGTGAAGATGC-TTGAAGCGAAGT
1 TATCAAATATAGTTTGTGATCAAGATCAAGTCGTGAAGA-CCTTTGAAACAAAGA
* * * * *
8033179 TATCAAATATAGTTCGTGATCCAGATCAAGTTGTGGAGACCTTTTAAACAAAGA
1 TATCAAATATAGTTTGTGATCAAGATCAAGTCGTGAAGACCTTTGAAACAAAGA
8033233 TATCAAATATAGTTTGTGATCAAGAT
1 TATCAAATATAGTTTGTGATCAAGAT
8033259 ATCAAGTATA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 66 0.99
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (54 bp):
TATCAAATATAGTTTGTGATCAAGATCAAGTCGTGAAGACCTTTGAAACAAAGA
Found at i:8033209 original size:133 final size:133
Alignment explanation
Indices: 8033046--8033310 Score: 359
Period size: 133 Copynumber: 2.0 Consensus size: 133
8033036 GTGATCAGGA
* * *
8033046 TATCAAATATAGTTTGTGATCAATACCAAGTCGTGAAGACCCTTGAAGCAAAGATATCAAATATA
1 TATCAAATATAGTTCGTGATCAAGACCAAGTCGTGAAGACCCTTGAAACAAAGATATCAAATATA
* * ** * * **
8033111 ATTTGTAATCAAGGTATCAAGTATAGTTTGTGATCGAGATCAAGTCGTGAAGATGCTTGAAGCGA
66 ATTTGTAATCAAGATATCAAGTATAATTCATGATCAAGATCAAGTCATGAAGACCCTTGAAGCGA
8033176 AGT
131 AGT
* * * * * *
8033179 TATCAAATATAGTTCGTGATCCAGATCAAGTTGTGGAGACCTTTTAAACAAAGATATCAAATATA
1 TATCAAATATAGTTCGTGATCAAGACCAAGTCGTGAAGACCCTTGAAACAAAGATATCAAATATA
* *
8033244 GTTTGTGATCAAGATATCAAGTATAATTCATGATCAAGATCAAGTCATGAAGACCCTTGAAGCGA
66 ATTTGTAATCAAGATATCAAGTATAATTCATGATCAAGATCAAGTCATGAAGACCCTTGAAGCGA
8033309 AG
131 AG
8033311 ATATGTGTCG
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
133 113 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (133 bp):
TATCAAATATAGTTCGTGATCAAGACCAAGTCGTGAAGACCCTTGAAACAAAGATATCAAATATA
ATTTGTAATCAAGATATCAAGTATAATTCATGATCAAGATCAAGTCATGAAGACCCTTGAAGCGA
AGT
Found at i:8033263 original size:25 final size:25
Alignment explanation
Indices: 8033229--8033283 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
8033219 CTTTTAAACA
* **
8033229 AAGATATCAAATATAGTTTGTGATC
1 AAGATATCAAATATAATTCATGATC
*
8033254 AAGATATCAAGTATAATTCATGATC
1 AAGATATCAAATATAATTCATGATC
8033279 AAGAT
1 AAGAT
8033284 CAAGTCATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.33
Consensus pattern (25 bp):
AAGATATCAAATATAATTCATGATC
Found at i:8034135 original size:8 final size:8
Alignment explanation
Indices: 8034122--8034179 Score: 53
Period size: 8 Copynumber: 6.5 Consensus size: 8
8034112 TGCAATTGTC
8034122 TATTTTTT
1 TATTTTTT
8034130 TATTTTTT
1 TATTTTTT
8034138 TATTATTTAAT
1 TATT-TTT--T
8034149 TATTATTTT
1 TATT-TTTT
*
8034158 CATTTTATTT
1 TA-TTT-TTT
8034168 TATTTTTT
1 TATTTTTT
8034176 TATT
1 TATT
8034180 ATCATATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
8 19 0.44
9 9 0.21
10 6 0.14
11 9 0.21
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.78
Consensus pattern (8 bp):
TATTTTTT
Found at i:8034163 original size:27 final size:26
Alignment explanation
Indices: 8034122--8034214 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 26
8034112 TGCAATTGTC
* *
8034122 TATTTTTTTATTTTTTTATTATTTAAT
1 TATTATTTTCTTTTTTTATT-TTTAAT
*
8034149 TATTATTTTCATTTTATTTTATTTTTTTAT
1 TATTATTTTC--TTT-TTTTA-TTTTTAAT
* *
8034179 TATCATATTTTC-TATTTTATTTCTAAT
1 TAT--TATTTTCTTTTTTTATTTTTAAT
8034206 TATTATTTT
1 TATTATTTT
8034215 TCATACTTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
25 6 0.11
27 17 0.31
28 5 0.09
29 4 0.07
30 13 0.24
31 2 0.04
32 7 0.13
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (26 bp):
TATTATTTTCTTTTTTTATTTTTAAT
Found at i:8034165 original size:33 final size:32
Alignment explanation
Indices: 8034135--8034200 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
8034125 TTTTTTATTT
* *
8034135 TTTTATTATTTAATTAT-TATTTTC-ATTTTA
1 TTTTATTTTTTTATTATATATTTTCTATTTTA
8034165 TTTTATTTTTTTATTATCATATTTTCTATTTTA
1 TTTTATTTTTTTATTAT-ATATTTTCTATTTTA
8034198 TTT
1 TTT
8034201 CTAATTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 15 0.48
32 7 0.23
33 9 0.29
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (32 bp):
TTTTATTTTTTTATTATATATTTTCTATTTTA
Found at i:8034209 original size:38 final size:38
Alignment explanation
Indices: 8034129--8034215 Score: 90
Period size: 38 Copynumber: 2.3 Consensus size: 38
8034119 GTCTATTTTT
* *
8034129 TTATTTTTTTATTATTTAATTATTATTTTCATTTTATT
1 TTATTTTTTTATTATATAATTATTATTTTCATTTTATA
*
8034167 TTATTTTTTTATTATCAT-ATTTTCTATTTT-ATTTCTA-A
1 TTATTTTTTTATTAT-ATAATTAT-TATTTTCATTT-TATA
8034205 TTATTATTTTT
1 TTATT-TTTTT
8034216 CATACTTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 28 0.67
39 14 0.33
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (38 bp):
TTATTTTTTTATTATATAATTATTATTTTCATTTTATA
Found at i:8036058 original size:11 final size:11
Alignment explanation
Indices: 8036042--8036121 Score: 63
Period size: 11 Copynumber: 7.1 Consensus size: 11
8036032 CTCTTTCTCT
8036042 TTTTTTTTTTA
1 TTTTTTTTTTA
*
8036053 TTTTTTTATT-
1 TTTTTTTTTTA
* *
8036063 TTTATTTTTTG
1 TTTTTTTTTTA
* *
8036074 TTTGTTGTTTA
1 TTTTTTTTTTA
8036085 TCTTTTGTTTATTA
1 T-TTTT-TTT-TTA
*
8036099 TTATTTTTTTA
1 TTTTTTTTTTA
*
8036110 TTATTTTTTTA
1 TTTTTTTTTTA
8036121 T
1 T
8036122 CATATATTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
10 8 0.14
11 33 0.59
12 6 0.11
13 5 0.09
14 4 0.07
ACGTcount: A:0.12, C:0.01, G:0.05, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:8036058 original size:14 final size:14
Alignment explanation
Indices: 8036041--8036119 Score: 68
Period size: 14 Copynumber: 5.4 Consensus size: 14
8036031 TCTCTTTCTC
8036041 TTTTTTTTTTTATT
1 TTTTTTTTTTTATT
*
8036055 TTTTTATTTTTATTT
1 TTTTTTTTTTTA-TT
*
8036070 TTTGTTTGTTGTTTATC
1 TTT-TTT-TT-TTTATT
* *
8036087 TTTTGTTTATTATT
1 TTTTTTTTTTTATT
* *
8036101 ATTTTTTTATTATT
1 TTTTTTTTTTTATT
8036115 TTTTT
1 TTTTT
8036120 ATCATATATT
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
14 31 0.60
15 7 0.13
16 4 0.08
17 6 0.12
18 4 0.08
ACGTcount: A:0.11, C:0.01, G:0.05, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTTTATT
Found at i:8041400 original size:19 final size:19
Alignment explanation
Indices: 8041376--8041413 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8041366 CCATTTGACT
*
8041376 TATTGGAGTATGGTTTGAG
1 TATTGGAGTATGATTTGAG
8041395 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
8041414 GTCGAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:8046862 original size:21 final size:19
Alignment explanation
Indices: 8046826--8046866 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
8046816 ACATGTTGAG
8046826 TAGTTAATTTAAGTTATTT
1 TAGTTAATTTAAGTTATTT
*
8046845 TAGTTAAATTTTATGTTATTT
1 TAGTT-AA-TTTAAGTTATTT
8046866 T
1 T
8046867 GTTTTAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (19 bp):
TAGTTAATTTAAGTTATTT
Found at i:8056884 original size:19 final size:19
Alignment explanation
Indices: 8056860--8056897 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8056850 CCATTTGACT
8056860 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
8056879 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
8056898 GTTTAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:8056978 original size:28 final size:28
Alignment explanation
Indices: 8056941--8056999 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
8056931 TTTGGAATAT
* *
8056941 AGGGGTAAAATGGTAATTTTGCCACC-CC
1 AGGGGCAAAATGATAATTTT-CCACCACC
*
8056969 AGGGGCAAAATTATAATTTTCCACCACC
1 AGGGGCAAAATGATAATTTTCCACCACC
8056997 AGG
1 AGG
8057000 ACATTTTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (28 bp):
AGGGGCAAAATGATAATTTTCCACCACC
Found at i:8067798 original size:11 final size:11
Alignment explanation
Indices: 8067782--8067809 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8067772 TACTGTAGTT
8067782 TTTAAAACAAC
1 TTTAAAACAAC
8067793 TTTAAAACAAC
1 TTTAAAACAAC
8067804 TTTAAA
1 TTTAAA
8067810 CCCAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (11 bp):
TTTAAAACAAC
Found at i:8070119 original size:13 final size:13
Alignment explanation
Indices: 8070101--8070125 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8070091 TTTCAGAAAA
8070101 TTTATAAAATCAT
1 TTTATAAAATCAT
8070114 TTTATAAAATCA
1 TTTATAAAATCA
8070126 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:8072278 original size:22 final size:22
Alignment explanation
Indices: 8072253--8072299 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
8072243 AAATTTTACC
8072253 TTTTGTCACT-TATTTCCTTGAA
1 TTTT-TCACTATATTTCCTTGAA
*
8072275 -TTTTCACTAATTTTTCCTTGAA
1 TTTTTCACT-ATATTTCCTTGAA
8072297 TTT
1 TTT
8072300 CTCCACCTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
20 5 0.24
21 3 0.14
22 11 0.52
23 2 0.10
ACGTcount: A:0.19, C:0.17, G:0.06, T:0.57
Consensus pattern (22 bp):
TTTTTCACTATATTTCCTTGAA
Found at i:8086711 original size:36 final size:37
Alignment explanation
Indices: 8086625--8086726 Score: 143
Period size: 37 Copynumber: 2.8 Consensus size: 37
8086615 GCATACATCG
* **
8086625 TCATCATGTGTGCACTCCCTACTTGCACACTCTGTCA
1 TCATCATGTGTGCACTCCCTACTCGCACACTCTGAAA
8086662 TCATCATGTGTGCACTCCCTACTCGCACACTCT-AAA
1 TCATCATGTGTGCACTCCCTACTCGCACACTCTGAAA
* * *
8086698 TCATAATGCGTGCACTCCTTACTCGCACA
1 TCATCATGTGTGCACTCCCTACTCGCACA
8086727 TTTCAACATC
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 27 0.46
37 32 0.54
ACGTcount: A:0.23, C:0.35, G:0.13, T:0.29
Consensus pattern (37 bp):
TCATCATGTGTGCACTCCCTACTCGCACACTCTGAAA
Found at i:8088147 original size:54 final size:54
Alignment explanation
Indices: 8088077--8088330 Score: 386
Period size: 54 Copynumber: 4.7 Consensus size: 54
8088067 ATGGTGATAT
* *
8088077 TGTCTGGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGAGTGAGATGGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGAGTGAGATGGGA
* *
8088131 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAACT-AGGTGAGATGGAA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGA-GTGAGATGGGA
* **
8088185 TGTCCGGCTATGTGCACGATGTGGTTGGATGCACATGAGCTGAGCAAGATGGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGAGTGAGATGGGA
* *
8088239 TGTCCGGCTATGTGCACTATGTGGTGAGATGCACATGAGCTCG-GTGAGATGGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCT-GAGTGAGATGGGA
*
8088293 TGTCCGGCTATGTGCACAATGTGGTGGGATGCACATGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGA
8088331 TGAATCTTGA
Statistics
Matches: 181, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.01
54 178 0.98
55 2 0.01
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (54 bp):
TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGAGTGAGATGGGA
Found at i:8095940 original size:21 final size:21
Alignment explanation
Indices: 8095910--8095964 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
8095900 GGATATGTTC
8095910 ATGCAATTCATGACAAAGACTA
1 ATGC-ATTCATGACAAAGACTA
* *
8095932 ATGCATTCATAACAAAGACTG
1 ATGCATTCATGACAAAGACTA
*
8095953 ATGCATTTATGA
1 ATGCATTCATGA
8095965 TAAGGACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (21 bp):
ATGCATTCATGACAAAGACTA
Found at i:8097447 original size:19 final size:19
Alignment explanation
Indices: 8097406--8097447 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8097396 ATTTTTTTAA
* *
8097406 AAAAAAAAATTTAGAATTC
1 AAAAAAAAATTTAAAAATC
8097425 AAAAAAAAATTTCAAAAAT-
1 AAAAAAAAATTT-AAAAATC
8097444 AAAA
1 AAAA
8097448 GTGGTAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.21
Consensus pattern (19 bp):
AAAAAAAAATTTAAAAATC
Found at i:8103165 original size:27 final size:28
Alignment explanation
Indices: 8103093--8103168 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
8103083 CTTCTGATGG
* * *
8103093 TTAAATGAATCCATCCATTTTCAGTGAT
1 TTAAATGTATTCATCCACTTTCAGTGAT
* * *
8103121 TTTAATGTATTTATCCACTTTCGGTGA-
1 TTAAATGTATTCATCCACTTTCAGTGAT
*
8103148 TTAAATTTATTCATCCACTTT
1 TTAAATGTATTCATCCACTTT
8103169 AAATAGTATT
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
27 18 0.46
28 21 0.54
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (28 bp):
TTAAATGTATTCATCCACTTTCAGTGAT
Found at i:8104050 original size:18 final size:18
Alignment explanation
Indices: 8103987--8104050 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
8103977 TGTCATGTAT
*
8103987 ACACGTTTAAACACGATA
1 ACACGATTAAACACGATA
* * *
8104005 ACGCGATTAAACACGTTT
1 ACACGATTAAACACGATA
* * *
8104023 ATACGTTTAAACATGATA
1 ACACGATTAAACACGATA
8104041 ACACGATTAA
1 ACACGATTAA
8104051 TTAAACATGT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (18 bp):
ACACGATTAAACACGATA
Found at i:8107933 original size:27 final size:28
Alignment explanation
Indices: 8107876--8107933 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
8107866 GGAAAAATGT
*
8107876 CCTGGTGGTGGAAAATTACAATTTTGCC
1 CCTGGTGGTGGAAAATTACAATTTTGAC
*
8107904 CCTGG-GGTGGCAAAATTACCATTTT-AC
1 CCTGGTGGTGG-AAAATTACAATTTTGAC
8107931 CCT
1 CCT
8107934 TTTACTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (28 bp):
CCTGGTGGTGGAAAATTACAATTTTGAC
Found at i:8108004 original size:20 final size:20
Alignment explanation
Indices: 8107987--8108024 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8107977 CCTCAAATCT
8107987 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
8108007 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
8108025 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:8118433 original size:20 final size:20
Alignment explanation
Indices: 8118416--8118453 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8118406 CCTCAAATAT
*
8118416 TACTCCAGTAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
8118436 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
8118454 GGGGCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:8120103 original size:13 final size:13
Alignment explanation
Indices: 8120085--8120109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8120075 AGAGAAATTT
8120085 TGATTTTATAAAA
1 TGATTTTATAAAA
8120098 TGATTTTATAAA
1 TGATTTTATAAA
8120110 TTTTTTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:8127781 original size:4 final size:4
Alignment explanation
Indices: 8127774--8127821 Score: 55
Period size: 4 Copynumber: 12.0 Consensus size: 4
8127764 TTTCTATCTT
*
8127774 TTTC TTTC TTTC TTTC TTTCC TTTCC TTTC GTT- TTTC TTT- TTTC TTTC
1 TTTC TTTC TTTC TTTC TTT-C TTT-C TTTC TTTC TTTC TTTC TTTC TTTC
8127822 CTCTCCTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
3 5 0.13
4 25 0.64
5 9 0.23
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.73
Consensus pattern (4 bp):
TTTC
Found at i:8127802 original size:18 final size:18
Alignment explanation
Indices: 8127753--8127832 Score: 62
Period size: 18 Copynumber: 4.7 Consensus size: 18
8127743 CAAAATCGAG
* *
8127753 CCTTTCCTTCCTTTCTAT
1 CCTTTCCTTTCTTTCTTT
* *
8127771 CTTTTTCTTTCTTTCTTT
1 CCTTTCCTTTCTTTCTTT
*
8127789 -CTTTCCTTTCCTTTCGTT
1 CCTTTCCTTT-CTTTCTTT
8127807 --TTT-CTTT-TTTCTTT
1 CCTTTCCTTTCTTTCTTT
*
8127821 CCTCTCCTTTCT
1 CCTTTCCTTTCT
8127833 CTTTTCTTCT
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
14 6 0.12
16 6 0.12
17 14 0.29
18 22 0.46
ACGTcount: A:0.01, C:0.31, G:0.01, T:0.66
Consensus pattern (18 bp):
CCTTTCCTTTCTTTCTTT
Found at i:8127818 original size:28 final size:29
Alignment explanation
Indices: 8127778--8127840 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
8127768 TATCTTTTTC
*
8127778 TTTCTTTCTTTCTTTCCTTTCCTTTCGT-T
1 TTTCTTTCTTTCTTTCCTCTCCTTTC-TCT
8127807 TTTCTTT-TTTCTTTCCTCTCCTTTCTCT
1 TTTCTTTCTTTCTTTCCTCTCCTTTCTCT
8127835 TTTCTT
1 TTTCTT
8127841 CTTGGTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.70
Consensus pattern (29 bp):
TTTCTTTCTTTCTTTCCTCTCCTTTCTCT
Found at i:8127823 original size:23 final size:23
Alignment explanation
Indices: 8127782--8127843 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
8127772 TTTTTCTTTC
* *
8127782 TTTCTTTCTTTCCTTTCCTTTCGTT
1 TTTCTTT-TTT-CTTTCCTCTCCTT
8127807 TTTCTTTTTTCTTTCCTCTCCTT
1 TTTCTTTTTTCTTTCCTCTCCTT
*
8127830 TCTCTTTTCTTCTT
1 TTTCTTTT-TTCTT
8127844 GGTTATGGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 18 0.55
24 8 0.24
25 7 0.21
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTCTTTTTTCTTTCCTCTCCTT
Found at i:8133313 original size:22 final size:22
Alignment explanation
Indices: 8133285--8133328 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8133275 CTTGGCGGCA
8133285 ACATGTAAA-TGAGAATAGTGTT
1 ACATGTAAACTGAGAA-AGTGTT
*
8133307 ACATGTAAACTTAGAAAGTGTT
1 ACATGTAAACTGAGAAAGTGTT
8133329 TGATGGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (22 bp):
ACATGTAAACTGAGAAAGTGTT
Found at i:8134062 original size:35 final size:35
Alignment explanation
Indices: 8134023--8134131 Score: 173
Period size: 35 Copynumber: 3.1 Consensus size: 35
8134013 AGTGTGGATA
* *
8134023 ATGATATTGATGTGTGTGAGTAGGGAGTGCACACG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
8134058 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
* * *
8134093 ATGATGTTAAAGTGTGCGAGTAGGGAGTGCACACA
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
8134128 ATGA
1 ATGA
8134132 CTCTGACTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 69 1.00
ACGTcount: A:0.28, C:0.10, G:0.37, T:0.26
Consensus pattern (35 bp):
ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
Found at i:8138866 original size:25 final size:25
Alignment explanation
Indices: 8138832--8138886 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
8138822 CATCATGTCT
* * *
8138832 GCATGTAACAACTCTAATGCATTTG
1 GCATGTAACAAATCTAATGAATGTG
*
8138857 GCATGTAACAAATCTATTGAATGTG
1 GCATGTAACAAATCTAATGAATGTG
8138882 GCATG
1 GCATG
8138887 GTTTAAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (25 bp):
GCATGTAACAAATCTAATGAATGTG
Found at i:8142336 original size:97 final size:97
Alignment explanation
Indices: 8142227--8142446 Score: 248
Period size: 98 Copynumber: 2.2 Consensus size: 97
8142217 TGATGTGTAA
* * ** *
8142227 TAACAA-TATTTTTAAAATATGGTGTATAACTTAGTCTCTATCTTTGTATTTCACTAGAATATAA
1 TAACAATTTTTTTTAAAACATGGCATATAACTTAGTCTC-ATCTTTGTATTTCACAAGAATATAA
*
8142291 ACTCTTGGAGTTAAACAAT-TTAAACATTA-CATG
65 ACTATTGGAGTTAAAC-ATGTTAAACA-TAGCATG
** * *
8142324 TAACAATTTTTTTTTTCAACATGGCATATAACTTGGTCTCATCTTTGTATTTCACAAGGATATAA
1 TAACAA-TTTTTTTTAAAACATGGCATATAACTTAGTCTCATCTTTGTATTTCACAAGAATATAA
*
8142389 ATTATTGGAGTTAAACATGTTAAACATAGCATG
65 ACTATTGGAGTTAAACATGTTAAACATAGCATG
* **
8142422 TAATAACTTTTTTTTTCAACATGGC
1 TAACAA-TTTTTTTTAAAACATGGC
8142447 CTGTAACAAC
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
97 10 0.09
98 71 0.67
99 25 0.24
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (97 bp):
TAACAATTTTTTTTAAAACATGGCATATAACTTAGTCTCATCTTTGTATTTCACAAGAATATAAA
CTATTGGAGTTAAACATGTTAAACATAGCATG
Found at i:8142387 original size:98 final size:99
Alignment explanation
Indices: 8142251--8142446 Score: 290
Period size: 98 Copynumber: 2.0 Consensus size: 99
8142241 AAATATGGTG
* *
8142251 TATAACTTAGTCTCTATCTTTGTATTTCACTAGAATATAAACTCTTGGAGTTAAACAAT-TTAAA
1 TATAACTTAGTCTCTATCTTTGTATTTCACAAGAATATAAACTATTGGAGTTAAAC-ATGTTAAA
*
8142315 CATTA-CATGTAACAATTTTTTTTTTCAACATGGCA
65 CA-TAGCATGTAACAACTTTTTTTTTCAACATGGCA
* * *
8142350 TATAACTTGGTCTC-ATCTTTGTATTTCACAAGGATATAAATTATTGGAGTTAAACATGTTAAAC
1 TATAACTTAGTCTCTATCTTTGTATTTCACAAGAATATAAACTATTGGAGTTAAACATGTTAAAC
*
8142414 ATAGCATGTAATAACTTTTTTTTTCAACATGGC
66 ATAGCATGTAACAACTTTTTTTTTCAACATGGC
8142447 CTGTAACAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
97 4 0.05
98 71 0.81
99 13 0.15
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (99 bp):
TATAACTTAGTCTCTATCTTTGTATTTCACAAGAATATAAACTATTGGAGTTAAACATGTTAAAC
ATAGCATGTAACAACTTTTTTTTTCAACATGGCA
Found at i:8142451 original size:28 final size:29
Alignment explanation
Indices: 8142408--8142474 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
8142398 GTTAAACATG
* *
8142408 TTAAACATAGCATGTAATAACTTTT-TTT
1 TTAAACATGGCATGTAACAACTTTTCTTT
* *
8142436 TTCAACATGGCCTGTAACAACTTTTCTTT
1 TTAAACATGGCATGTAACAACTTTTCTTT
8142465 TTAAACATGG
1 TTAAACATGG
8142475 TTGTAACTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.42
Consensus pattern (29 bp):
TTAAACATGGCATGTAACAACTTTTCTTT
Found at i:8142753 original size:19 final size:20
Alignment explanation
Indices: 8142726--8142771 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8142716 AGGAGACAAG
*
8142726 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
8142745 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
8142764 ATAATATT
1 ATAATATT
8142772 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:8149243 original size:26 final size:28
Alignment explanation
Indices: 8149214--8149282 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
8149204 AAACATGTTA
*
8149214 AACATGGCATATAACAA-CTTT-TTTTC
1 AACATGGCATGTAACAATCTTTGTTTTC
* *
8149240 AACATGACATGTAACAATTTTTGTTTTC
1 AACATGGCATGTAACAATCTTTGTTTTC
*
8149268 AAAATGGCATGTAAC
1 AACATGGCATGTAAC
8149283 TTAATCTCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 15 0.42
27 3 0.08
28 18 0.50
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (28 bp):
AACATGGCATGTAACAATCTTTGTTTTC
Found at i:8149417 original size:56 final size:56
Alignment explanation
Indices: 8149310--8149420 Score: 150
Period size: 56 Copynumber: 2.0 Consensus size: 56
8149300 ATATCACTAA
* * *
8149310 GATATAAACTCTTGGAGTTAAGCACTTAAAAATAACATGTAGTAACTTTTTTTTAT
1 GATATAAACTCTTAGAGTTAAACACTTAAAAATAACATGTAATAACTTTTTTTTAT
* * * *
8149366 GATATAAACTCTTAGAGTTAAACACTTAAACATGACGTGTAATAATATTTTTTTT
1 GATATAAACTCTTAGAGTTAAACACTTAAAAATAACATGTAATAA-CTTTTTTTT
8149421 TTCAATATGG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
56 39 0.83
57 8 0.17
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.40
Consensus pattern (56 bp):
GATATAAACTCTTAGAGTTAAACACTTAAAAATAACATGTAATAACTTTTTTTTAT
Found at i:8149552 original size:26 final size:26
Alignment explanation
Indices: 8149523--8149574 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
8149513 AAACACCTTA
* *
8149523 AACATGGCATGTAATAACTTTTTTTT
1 AACATGGCATGTAACAACTTTCTTTT
*
8149549 AACATGGCGTGTAACAACTTTCTTTT
1 AACATGGCATGTAACAACTTTCTTTT
8149575 CAATATATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (26 bp):
AACATGGCATGTAACAACTTTCTTTT
Found at i:8153105 original size:251 final size:254
Alignment explanation
Indices: 8152666--8153602 Score: 871
Period size: 253 Copynumber: 3.7 Consensus size: 254
8152656 TTTATTTGAT
* * * * * * *
8152666 TTAATTTACTTGTTACATTCAATCTCACACATTTAC-GCAATATTTTGATAATACTTGTTCGAAC
1 TTAATTTACTTGTTACACTAAATCTCACACATTTACATCAATATTTTAATAATACTTATTCCACC
* * * ** * * *
8152730 TTTATAATTTTTTACGTTAATTCTTATAAGTTTACATAAAGG-TTTTTCAGCTGCTATTTTTTAT
66 TTTATAA-TTTTTACATTAATTCTTACAAGTTTACATCAAGGATTTTTCAATTGCTAATTTTCAC
* * * * *
8152794 TATAATTATTTTTATTCTTATTATTATTCCTTTATAAATTGAAATTTGT-TATCTATTAAATACT
130 TATAATTATTTTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAATC-ATTAAATACT
* * * * * * *
8152858 TTAAACTCGAGAATATAAACTTAAGTGTTTAATTTTCTGAAAAAATTATGTTTA-TTTGAC
194 TTTAGCTCAATAATATAAATTTAAGTGTTTAATTTTCTGAAAAAATTATATTTATTTTAAC
* * * * * * *
8152918 TTAATTTACTTGTTATATTAAATCTCATATATTTACATCAATATTTTAATGATCCCTATTCCACC
1 TTAATTTACTTGTTACACTAAATCTCACACATTTACATCAATATTTTAATAATACTTATTCCACC
* *** ** * *
8152983 TTTATAA-TTTTACATTAATTCTGATGGGTTTATGTCAA-GATTTCTCAATTACTAATTTTCACT
66 TTTATAATTTTTACATTAATTCTTACAAGTTTACATCAAGGATTTTTCAATTGCTAATTTTCACT
* *
8153046 ATAGTTATTTTTATCCTTATGATTATTCATTTATAAATTAAAATTTATAAATCATTAAATACTTT
131 ATAATTATTTTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAATCATTAAATACTTT
* * * ***
8153111 TAGCTCAATCATAAAAATTTAAATGCAAAATTTTCT-AAAAAATTATATTTATTTTAAC
196 TAGCTCAATAATATAAATTTAAGTGTTTAATTTTCTGAAAAAATTATATTTATTTTAAC
* * * * *
8153169 TTAA-TTAGATTGTTATACTAAATCTCACACATTTACATCAATATTTT-ATCAAAACTTGTTCCG
1 TTAATTTA-CTTGTTACACTAAATCTCACACATTTACATCAATATTTTAAT-AATACTTATTCCA
* ** * * * * * * * *
8153232 TCTTTATAATTTTTTATGTTTACTCTTACAAGTGTACACCAATG-TTTTTTAGTTGCTAGTTTTC
64 CCTTTATAA-TTTTTACATTAATTCTTACAAGTTTACATCAAGGATTTTTCAATTGCTAATTTTC
* * * **
8153296 ACCATAATTATTTTTAT-CTATATTATTATTCCTTTATAAATTAAAATTTGTAAATTGTTAAATA
128 ACTATAATTATTTTTATCCT-TATTATTATTCATTTATAAATTAAAATTTATAAATCATTAAATA
* * *
8153360 CTTTTAGCTCAATAATATAAATTTAAAG-GTTTAACTTTC-GCAAAAGTTATATTTATTTTAAC
192 CTTTTAGCTCAATAATATAAATTT-AAGTGTTTAATTTTCTGAAAAAATTATATTTATTTTAAC
* * * * * ** * *
8153422 TTAATTGACTTGTTACGCTAAATTTTACATATTTATGTCAATATTTTAACAATGCTTATTCCACC
1 TTAATTTACTTGTTACACTAAATCTCACACATTTACATCAATATTTTAATAATACTTATTCCACC
* * *
8153487 TTTATTATTTTTTACATTAATTTTTACAAGTTTACGGT-AAGGA-TTTTCAATTGCT-ATTTTCC
66 TTTA-TAATTTTTACATTAATTCTTACAAGTTTAC-ATCAAGGATTTTTCAATTGCTAATTTT-C
* * *
8153549 TCTATAATTATTTTTGTCCTTATTATTATTCATTTTTAAATTAAAATTTATAAA
128 ACTATAATTATTTTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAA
8153603 AAGTAATGTT
Statistics
Matches: 542, Mismatches: 124, Indels: 37
0.77 0.18 0.05
Matches are distributed among these distances:
250 20 0.04
251 178 0.33
252 41 0.08
253 293 0.54
254 10 0.02
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (254 bp):
TTAATTTACTTGTTACACTAAATCTCACACATTTACATCAATATTTTAATAATACTTATTCCACC
TTTATAATTTTTACATTAATTCTTACAAGTTTACATCAAGGATTTTTCAATTGCTAATTTTCACT
ATAATTATTTTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAATCATTAAATACTTT
TAGCTCAATAATATAAATTTAAGTGTTTAATTTTCTGAAAAAATTATATTTATTTTAAC
Found at i:8154174 original size:21 final size:21
Alignment explanation
Indices: 8154139--8154191 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8154129 AAATACTTCC
* *
8154139 AAGGATCGACCTTCCTTGCCT
1 AAGGATTGACCTTCCTTACCT
* *
8154160 AGGGATTGACTTTCCTTACCT
1 AAGGATTGACCTTCCTTACCT
8154181 AAGGATTGACC
1 AAGGATTGACC
8154192 CTTCATGCCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (21 bp):
AAGGATTGACCTTCCTTACCT
Found at i:8157270 original size:20 final size:20
Alignment explanation
Indices: 8157247--8157289 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8157237 AGCATAAATA
* * *
8157247 TCTAATTTCCAGCAGCTTCT
1 TCTAACTTCCAACAACTTCT
*
8157267 TCTAGCTTCCAACAACTTCT
1 TCTAACTTCCAACAACTTCT
8157287 TCT
1 TCT
8157290 TCTTCCTCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.33, G:0.07, T:0.40
Consensus pattern (20 bp):
TCTAACTTCCAACAACTTCT
Found at i:8158259 original size:35 final size:35
Alignment explanation
Indices: 8158215--8158323 Score: 146
Period size: 35 Copynumber: 3.1 Consensus size: 35
8158205 GGGAATGCGT
*
8158215 ATGATGATATTGATATGTGCGAGTAAGGAGTGCAC
1 ATGATGATATTGAAATGTGCGAGTAAGGAGTGCAC
*
8158250 ATGATGATATTGAAATGTGCGAGTAGGGAGTGCAC
1 ATGATGATATTGAAATGTGCGAGTAAGGAGTGCAC
* * * * * *
8158285 ATGATAATTTTGAAATGAGAGTGTAAGGAGTGTAC
1 ATGATGATATTGAAATGTGCGAGTAAGGAGTGCAC
8158320 ATGA
1 ATGA
8158324 GCTGAGTGAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.28
Consensus pattern (35 bp):
ATGATGATATTGAAATGTGCGAGTAAGGAGTGCAC
Found at i:8162563 original size:28 final size:27
Alignment explanation
Indices: 8162527--8162579 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
8162517 ATATCCTGGT
*
8162527 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
8162554 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
8162580 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:8162647 original size:20 final size:20
Alignment explanation
Indices: 8162624--8162669 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
8162614 CTTCTAAACC
8162624 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AATAAG
*
8162644 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCTAATAAG
8162664 TCAAAT
1 TCAAAT
8162670 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAAATCATACTCTAATAAG
Found at i:8166411 original size:29 final size:29
Alignment explanation
Indices: 8166373--8166433 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
8166363 TTTTTGAAAT
* *
8166373 TTACACTTTTGCCCCCATAAAAGTGAAAAA
1 TTACACTTTTG-CCCAAAAAAAGTGAAAAA
* *
8166403 TTACATTTTTGCCCAAAAAAATTGAAAAA
1 TTACACTTTTGCCCAAAAAAAGTGAAAAA
8166432 TT
1 TT
8166434 GCCCATAGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (29 bp):
TTACACTTTTGCCCAAAAAAAGTGAAAAA
Found at i:8176767 original size:35 final size:36
Alignment explanation
Indices: 8176721--8176826 Score: 112
Period size: 35 Copynumber: 3.1 Consensus size: 36
8176711 CACTCTGCCA
*
8176721 ATGTGCACTCCCTACACGCACAAGGT-AATATCATC
1 ATGTGCACTCCCTACTCGCACAAGGTCAATATCATC
* * **
8176756 ATGTGCACTCCCTACTCGTA-GATTTCAATATCATC
1 ATGTGCACTCCCTACTCGCACAAGGTCAATATCATC
* * *
8176791 GTGTGCACTCCCTATTCGCACAA-G-CAATATTATC
1 ATGTGCACTCCCTACTCGCACAAGGTCAATATCATC
8176825 AT
1 AT
8176827 CCACACTTCA
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
34 12 0.21
35 44 0.77
36 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (36 bp):
ATGTGCACTCCCTACTCGCACAAGGTCAATATCATC
Found at i:8178718 original size:53 final size:54
Alignment explanation
Indices: 8178650--8178861 Score: 232
Period size: 53 Copynumber: 3.9 Consensus size: 54
8178640 AATGTATAAA
* * *
8178650 ATCTAAA-ACAGAAATTAACTAAATAATGTACAAAATCTAAAACTATTAAATTT
1 ATCTAAAGACAAAAATTAACCATATAATGTACAAAATCTAAAACTATTAAATTT
* *
8178703 ATCTAAA-ACAAAAATTAACTATATCATGTACAAAATCTAAAACTATTAAATTT
1 ATCTAAAGACAAAAATTAACCATATAATGTACAAAATCTAAAACTATTAAATTT
* * *
8178756 TTAATAAAGA-AAAAATTAACCATATAATGTACTAAATCTAAAACTATATGTTAAATTT
1 AT-CTAAAGACAAAAATTAACCATATAATGTACAAAATCTAAAAC--TA--TTAAATTT
** * * *
8178814 CCCATAAAGAAAAAAATTAACCATATAATATACCAAATCTAAAACTAT
1 ATC-TAAAGACAAAAATTAACCATATAATGTACAAAATCTAAAACTAT
8178862 ATGTTAAATT
Statistics
Matches: 138, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
53 51 0.37
54 35 0.25
55 2 0.01
56 2 0.01
57 2 0.01
58 14 0.10
59 32 0.23
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.30
Consensus pattern (54 bp):
ATCTAAAGACAAAAATTAACCATATAATGTACAAAATCTAAAACTATTAAATTT
Found at i:8178852 original size:59 final size:59
Alignment explanation
Indices: 8178661--8178883 Score: 252
Period size: 59 Copynumber: 4.0 Consensus size: 59
8178651 TCTAAAACAG
* * ** *
8178661 AAATTAACTAAATAATGTACAAAATCTAAAAC--TA--TTAAATTTATC-TAAA-ACAA
1 AAATTAACCATATAATGTACAAAATCTAAAACTATATGTTAAATTTCCCATAAAGAAAA
* * ***
8178714 AAATTAACTATATCATGTACAAAATCTAAAAC--TA--TTAAATTTTTAATAAAG-AAA
1 AAATTAACCATATAATGTACAAAATCTAAAACTATATGTTAAATTTCCCATAAAGAAAA
*
8178768 AAATTAACCATATAATGTACTAAATCTAAAACTATATGTTAAATTTCCCATAAAGAAAA
1 AAATTAACCATATAATGTACAAAATCTAAAACTATATGTTAAATTTCCCATAAAGAAAA
* *
8178827 AAATTAACCATATAATATACCAAATCTAAAACTATATGTTAAATTTCCCATAAAGAA
1 AAATTAACCATATAATGTACAAAATCTAAAACTATATGTTAAATTTCCCATAAAGAA
8178884 TTTATATAAA
Statistics
Matches: 150, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
53 41 0.27
54 35 0.23
56 2 0.01
58 14 0.09
59 58 0.39
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.31
Consensus pattern (59 bp):
AAATTAACCATATAATGTACAAAATCTAAAACTATATGTTAAATTTCCCATAAAGAAAA
Found at i:8179153 original size:34 final size:33
Alignment explanation
Indices: 8179059--8179159 Score: 89
Period size: 32 Copynumber: 3.0 Consensus size: 33
8179049 CACAATGTAC
* *
8179059 AAAATTTGTACAAAATCTAAAACTATATATATTTT
1 AAAATTTGTACAAAATTTAAAAC--TATATATTAT
** * *
8179094 AAAATTTAAAACAAAAATT--AGCTATATATTAT
1 AAAATTT-GTACAAAATTTAAAACTATATATTAT
*
8179126 ACAAATTTGTACAAAATTTAAAACTATATGTTAT
1 A-AAATTTGTACAAAATTTAAAACTATATATTAT
8179160 TTATACAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
32 18 0.35
33 6 0.12
34 13 0.25
35 7 0.14
36 7 0.14
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (33 bp):
AAAATTTGTACAAAATTTAAAACTATATATTAT
Found at i:8179166 original size:28 final size:28
Alignment explanation
Indices: 8179130--8179186 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
8179120 TATTATACAA
* *
8179130 ATTTGTACAAAATTTAAAACTATATGTT
1 ATTTATACAAAATCTAAAACTATATGTT
8179158 ATTTATACAAAATCTAAAACTATATGTT
1 ATTTATACAAAATCTAAAACTATATGTT
8179186 A
1 A
8179187 AAATTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (28 bp):
ATTTATACAAAATCTAAAACTATATGTT
Found at i:8179312 original size:42 final size:42
Alignment explanation
Indices: 8179252--8179336 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
8179242 AACCTTCGAC
*
8179252 AGCTACTCCAACTATATTTATAAAATTAATTTTGTGCTACAT
1 AGCTACTCCAACTATATTTATAAAATTAATCTTGTGCTACAT
* *
8179294 AGCTACTCCAGCTGTATTTATAAAATTAATCTTGTGCTACAT
1 AGCTACTCCAACTATATTTATAAAATTAATCTTGTGCTACAT
8179336 A
1 A
8179337 ATATACAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (42 bp):
AGCTACTCCAACTATATTTATAAAATTAATCTTGTGCTACAT
Found at i:8199891 original size:209 final size:207
Alignment explanation
Indices: 8199602--8199983 Score: 606
Period size: 209 Copynumber: 1.8 Consensus size: 207
8199592 AAGATATTCC
* *
8199602 AATTAAATTTATAAAATTAATCTTGTTTTATATAATGTACAAAATTTGTATAAAATATAAAATTT
1 AATTAAATTTATAAAATTAATCTTGTTCTATATAATGTACAAAATTTGTATAAAATATAAAACTT
* *
8199667 ATTAATTTAGTAGAATATATTCTAAAATTCTTTATTTGTTACTCCCTAACCAACTAAGCTACTCC
66 ATTAATTTAGTAGAATATATTCTAAAATTCTTTATTTGTTACGCCCTAACCAACTAAGCTACTCA
*
8199732 AAATATTGTACAAAATCTGAAAAAAAAAAGTCTAAAACTTAATAATTTGGAAGAATATCTTCTAC
131 AAATAATGTACAAAATCTG---AAAAAAA-TCTAAAACTTAATAATTTGGAAGAATATCTTCTAC
8199797 TCAAAATAATATACAA
192 TCAAAATAATATACAA
* *
8199813 AATTATATTTAT-AAATTAATGTTGTTCTATATAATGTACAAAA-TTGTATAAAATATAAAACTT
1 AATTAAATTTATAAAATTAATCTTGTTCTATATAATGTACAAAATTTGTATAAAATATAAAACTT
* * * *
8199876 ATTAATTTGGTAGAATATATTCTGAAATTCTTTGTTTGTTACGCTCTAACCAACTAAGCTACTCA
66 ATTAATTTAGTAGAATATATTCTAAAATTCTTTATTTGTTACGCCCTAACCAACTAAGCTACTCA
*
8199941 AAATAATGTACAAAATTTGAAAAAAATCTAAAACTTAATAATT
131 AAATAATGTACAAAATCTGAAAAAAATCTAAAACTTAATAATT
8199984 AGGTAGAACA
Statistics
Matches: 159, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
205 17 0.11
206 7 0.04
209 95 0.60
210 29 0.18
211 11 0.07
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.38
Consensus pattern (207 bp):
AATTAAATTTATAAAATTAATCTTGTTCTATATAATGTACAAAATTTGTATAAAATATAAAACTT
ATTAATTTAGTAGAATATATTCTAAAATTCTTTATTTGTTACGCCCTAACCAACTAAGCTACTCA
AAATAATGTACAAAATCTGAAAAAAATCTAAAACTTAATAATTTGGAAGAATATCTTCTACTCAA
AATAATATACAA
Done.