Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 23 of 30
Found at i:8199983 original size:101 final size:101
Alignment explanation
Indices: 8199633--8200017 Score: 294
Period size: 101 Copynumber: 3.7 Consensus size: 101
8199623 CTTGTTTTAT
* * * * *
8199633 ATAATGTACAAAATTTGTATAAAATATAAAATTTATTAATTTAGTAGAATATATTCTAAAATTCT
1 ATAATGTACAAAATTTGAAAAAAATATAAAACTTAATAATTTGGTAGAATATATTCTAAAATTCT
* *
8199698 TTATTTGTTACTCCCTAACCAACTAAGCTACTCCAA
66 TTATTTGTTACTCTCTAACCAACTAAGCTACTCAAA
* * * * *
8199734 ATATTGTACAAAATCTGAAAAAAAAAAGTCTAAAACTTAATAATTTGGAAGAATATCTTCTACTC
1 ATAATGTACAAAATTTG---AAAAAAA-TATAAAACTTAATAATTTGGTAGAATAT-AT-T-CT-
** * **** * * * * ** * *
8199799 AAAATAATATACAAAATTA-TATTTATA--AATTAATGTTGTTCTAT
58 AAAATTCTTTA-TTTGTTACTCTCTA-ACCAACTAA-GCTACTCAAA
* * * *
8199843 ATAATGTACAAAA-TTGTATAAAATATAAAACTTATTAATTTGGTAGAATATATTCTGAAATTCT
1 ATAATGTACAAAATTTGAAAAAAATATAAAACTTAATAATTTGGTAGAATATATTCTAAAATTCT
* *
8199907 TTGTTTGTTACGCTCTAACCAACTAAGCTACTCAAA
66 TTATTTGTTACTCTCTAACCAACTAAGCTACTCAAA
* * * *
8199943 ATAATGTACAAAATTTGAAAAAAATCTAAAACTTAATAATTAGGTAGAACATGTTCTAAAATAT-
1 ATAATGTACAAAATTTGAAAAAAATATAAAACTTAATAATTTGGTAGAATATATTCTAAAAT-TC
8200007 TTTATTTGTTA
65 TTTATTTGTTA
8200018 TGCTAGAAGA
Statistics
Matches: 207, Mismatches: 61, Indels: 32
0.69 0.20 0.11
Matches are distributed among these distances:
99 4 0.02
100 27 0.13
101 72 0.35
102 2 0.01
103 1 0.00
104 30 0.14
105 28 0.14
106 1 0.00
107 1 0.00
108 9 0.04
109 28 0.14
110 4 0.02
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (101 bp):
ATAATGTACAAAATTTGAAAAAAATATAAAACTTAATAATTTGGTAGAATATATTCTAAAATTCT
TTATTTGTTACTCTCTAACCAACTAAGCTACTCAAA
Found at i:8201381 original size:27 final size:27
Alignment explanation
Indices: 8201335--8201391 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8201325 ATCAAGTTAC
* *
8201335 ATTAAAAATAATATCGTTACACATCAT
1 ATTAAAAAAAATATCATTACACATCAT
* **
8201362 ATTAAAAAAAATATTATTACATGTCAT
1 ATTAAAAAAAATATCATTACACATCAT
8201389 ATT
1 ATT
8201392 TAAGGTGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (27 bp):
ATTAAAAAAAATATCATTACACATCAT
Found at i:8201528 original size:56 final size:56
Alignment explanation
Indices: 8201457--8201592 Score: 202
Period size: 56 Copynumber: 2.4 Consensus size: 56
8201447 AAATACTCAC
* *
8201457 CATGTTTAAAAAATAATGTTGTTAAACGACATGTTC-AAAATATTTTTATTATATGT
1 CATGTTTAAAGAATAATGTTGTTAAACGACATGTTCAAAAAT-TTTTTATTATATAT
* * *
8201513 CATGTTTAAAGAATAATGTTGTTATACGTCATGTTTAAAAATTTTTTATTATATAT
1 CATGTTTAAAGAATAATGTTGTTAAACGACATGTTCAAAAATTTTTTATTATATAT
*
8201569 CATGTTTAAAGAATAATATTGTTA
1 CATGTTTAAAGAATAATGTTGTTA
8201593 CACACCATGT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
56 68 0.93
57 5 0.07
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (56 bp):
CATGTTTAAAGAATAATGTTGTTAAACGACATGTTCAAAAATTTTTTATTATATAT
Found at i:8201537 original size:29 final size:28
Alignment explanation
Indices: 8201457--8201607 Score: 117
Period size: 29 Copynumber: 5.4 Consensus size: 28
8201447 AAATACTCAC
* *
8201457 CATGTTTAAAAAATAATGTTGTTAAACGA
1 CATGTTT-AAAAATAATGTTGTTATACGT
* * * * *
8201486 CATG-TTCAAAATATTTTTATTATATGT
1 CATGTTTAAAAATAATGTTGTTATACGT
8201513 CATGTTTAAAGAATAATGTTGTTATACGT
1 CATGTTTAAA-AATAATGTTGTTATACGT
* * * **
8201542 CATGTTTAAAAAT-TTTTTATTATATAT
1 CATGTTTAAAAATAATGTTGTTATACGT
* * **
8201569 CATGTTTAAAGAATAATATTGTTACACAC
1 CATGTTTAAA-AATAATGTTGTTATACGT
8201598 CATGTTTAAA
1 CATGTTTAAA
8201608 GTGTTTAATT
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
27 37 0.39
28 12 0.13
29 46 0.48
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (28 bp):
CATGTTTAAAAATAATGTTGTTATACGT
Found at i:8201720 original size:27 final size:27
Alignment explanation
Indices: 8201668--8201760 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
8201658 AAACTATACC
8201668 TCATGTTTAAAAAATAATATTATTACACA
1 TCATGTTT-AAAAA-AATATTATTACACA
* *
8201697 TCATATTTAAAAAAATATTGTTACACA
1 TCATGTTTAAAAAAATATTATTACACA
* * *
8201724 TCATGTTGAAAAAAATGTTATTACACG
1 TCATGTTTAAAAAAATATTATTACACA
*
8201751 TCATTTTTAA
1 TCATGTTTAA
8201761 GGTGTTTAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 43 0.78
28 5 0.09
29 7 0.13
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (27 bp):
TCATGTTTAAAAAAATATTATTACACA
Found at i:8201862 original size:27 final size:27
Alignment explanation
Indices: 8201832--8201901 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
8201822 TCATGCCTAA
8201832 AAAATAATGTTGTTATACGTTATGTTC
1 AAAATAATGTTGTTATACGTTATGTTC
8201859 AAAATAATGTTGTTATACGTTATGTTC
1 AAAATAATGTTGTTATACGTTATGTTC
*
8201886 AAAAAAATGTTTGTTA
1 AAAATAATG-TTGTTA
8201902 AATTTAAGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 35 0.85
28 6 0.15
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (27 bp):
AAAATAATGTTGTTATACGTTATGTTC
Found at i:8201872 original size:154 final size:153
Alignment explanation
Indices: 8201519--8201896 Score: 398
Period size: 154 Copynumber: 2.4 Consensus size: 153
8201509 ATGTCATGTT
* * * * * *
8201519 TAAAGAATAATGTTGTTATACGTCATGTTTAAAAATTTTTTATTATATATCATGTTTAAAGAATA
1 TAAAAAATAATGTTGTTATACGTCATGTTTAAAAA-ATATTGTTATACATCATGTTCAAA-AA-A
* * * *
8201584 ATATTGTTACACACCATGTTTAAAGTGTTTAATTTCAAAAGTTTATATCGTATTGAAATACAAAG
63 ATGTTATTACACACCATGTTTAAAGTGTTTAATTCCAAAAGTTTATATCGTAGTGAAATACAAAG
* * **
8201649 ATAAAGACCAAACTATACCTCATGTT
128 ATAAAGACCAAAATACACCTCATGCC
* * * * * * *
8201675 TAAAAAATAATATTATTACACATCATATTTAAAAAAATATTGTTACACATCATGTTGAAAAAAAT
1 TAAAAAATAATGTTGTTATACGTCATGTTT-AAAAAATATTGTTATACATCATGTTCAAAAAAAT
** * * * *
8201740 GTTATTACACGTCATTTTTAAGGTGTTTAATTCCAAAAGTTTATGTTC-TAGTGAAATATAAAGA
65 GTTATTACACACCATGTTTAAAGTGTTTAATTCCAAAAGTTTAT-ATCGTAGTGAAATACAAAGA
*
8201804 TAAAGACCAAAATACACGTCATGCC
129 TAAAGACCAAAATACACCTCATGCC
* * * * *
8201829 TAAAAAATAATGTTGTTATACGTTATGTTCAAAATAATGTTGTTATACGTTATGTTCAAAAAAAT
1 TAAAAAATAATGTTGTTATACGTCATGTTTAAAA-AATATTGTTATACATCATGTTCAAAAAAAT
8201894 GTT
65 GTT
8201897 TGTTAAATTT
Statistics
Matches: 180, Mismatches: 39, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
153 4 0.02
154 125 0.69
155 4 0.02
156 42 0.23
157 5 0.03
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (153 bp):
TAAAAAATAATGTTGTTATACGTCATGTTTAAAAAATATTGTTATACATCATGTTCAAAAAAATG
TTATTACACACCATGTTTAAAGTGTTTAATTCCAAAAGTTTATATCGTAGTGAAATACAAAGATA
AAGACCAAAATACACCTCATGCC
Found at i:8201989 original size:29 final size:28
Alignment explanation
Indices: 8201950--8202032 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
8201940 AGACCAAGTT
* * *
8201950 ACACACTATGTTTCAAAGATAATGTTGTT
1 ACACACCATG-TTCAAAAATAATGTTGTC
*
8201979 GCACACCATGTTCAAAAAATAATGTTGTC
1 ACACACCATGTTC-AAAAATAATGTTGTC
* *
8202008 ATACACCATGTTCAAAAATATTGTT
1 ACACACCATGTTCAAAAATAATGTT
8202033 ATACATTATG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
28 14 0.30
29 32 0.70
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (28 bp):
ACACACCATGTTCAAAAATAATGTTGTC
Found at i:8202211 original size:126 final size:124
Alignment explanation
Indices: 8201980--8202413 Score: 388
Period size: 126 Copynumber: 3.4 Consensus size: 124
8201970 AATGTTGTTG
* * * **
8201980 CACACCATGT-TCAAAAAATAATGTTGTCATACACCATGTTCAAAAATATTGTTATACATTATGT
1 CACACCATGTGT-AAAAAATAATGTTATTACACACCATGTTCAAAAA-ATTGTTATACACCATGT
** * ** * * *
8202044 TTAAAGTATTTAACTCCAAGAGTTTATATTTTATTGCAATACAGAGATAGAGATCAAGTTA
64 TTAAAGTATTTAACTCCAAGAGTTTATATCCTAGTAAAATACAAAAATAGAGACCAAGTTA
* *** *
8202105 CACGCCATGTGTAAAAAATAATGTTATTACGTGCCATGTTCAAAAAATTGTTGTTCACACCATGT
1 CACACCATGTGTAAAAAATAATGTTATTACACACCATGTTCAAAAAATTGTT-AT-ACACCATGT
*
8202170 TT-AAGATATTTAACTCTAAGAGTTTATATCCTAGTAAAATACAAAAATAGAGACCAAGTTA
64 TTAAAG-TATTTAACTCCAAGAGTTTATATCCTAGTAAAATACAAAAATAGAGACCAAGTTA
* * * * *
8202231 CATACCATGTTTAAAAAATAATGTTATTGCACACCATGTTCAAAAAAAATACGAT-TACACGTCA
1 CACACCATGTGTAAAAAATAATGTTATTACACACCATGTTC--AAAAAAT-TGTTATACAC--CA
* * * * * * * **
8202295 TATTTAAAGTGTTTAACTCTAAGAGTTTTATAACTTAGTGAGATACAAAAATAGAGACCAAAATA
61 TGTTTAAAGTATTTAACTCCAAGAG-TTTATATCCTAGTAAAATACAAAAATAGAGACCAAGTTA
*** * * * *
8202360 CATGTCATGTTTAAACAATAATGTTATTATACACCATGTTCAAAAAAATGTTAT
1 CACACCATGTGTAAAAAATAATGTTATTACACACCATGTTCAAAAAATTGTTAT
8202414 TATATACCAT
Statistics
Matches: 253, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
124 6 0.02
125 41 0.16
126 96 0.38
127 8 0.03
128 28 0.11
129 74 0.29
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (124 bp):
CACACCATGTGTAAAAAATAATGTTATTACACACCATGTTCAAAAAATTGTTATACACCATGTTT
AAAGTATTTAACTCCAAGAGTTTATATCCTAGTAAAATACAAAAATAGAGACCAAGTTA
Found at i:8202411 original size:27 final size:27
Alignment explanation
Indices: 8202365--8202434 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
8202355 AAATACATGT
*
8202365 CATGTTTAAACAATAATGTTATTATACAC
1 CATGTTCAAA-AA-AATGTTATTATACAC
*
8202394 CATGTTCAAAAAAATGTTATTATATAC
1 CATGTTCAAAAAAATGTTATTATACAC
*
8202421 CATGTTGAAAAAAA
1 CATGTTCAAAAAAA
8202435 AAAGTTGTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 27 0.71
28 2 0.05
29 9 0.24
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (27 bp):
CATGTTCAAAAAAATGTTATTATACAC
Found at i:8202550 original size:27 final size:27
Alignment explanation
Indices: 8202512--8202569 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
8202502 TAAAGACCAA
*
8202512 GTTACACATTATGTTGAAAAAAAAATT
1 GTTACACATTATATTGAAAAAAAAATT
*
8202539 GTTACACGTTATATTGAAAAAAAAATT
1 GTTACACATTATATTGAAAAAAAAATT
8202566 GTTA
1 GTTA
8202570 TATATCATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (27 bp):
GTTACACATTATATTGAAAAAAAAATT
Found at i:8202657 original size:125 final size:125
Alignment explanation
Indices: 8202429--8202666 Score: 318
Period size: 125 Copynumber: 1.9 Consensus size: 125
8202419 ACCATGTTGA
*
8202429 AAAAAAAAAGTTGTTACATGTCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
1 AAAAAAAAAGTTGTTACATATCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
* *
8202494 TACAAAGATAAAGACCAAGTTACACATTATGTTGAAAAAAAAATTGTTACACGTTATATTG
66 TACAAAGATAAAGACCAAGTTACACATCATATTG-AAAAAAAATTGTTACACGTTATATTG
* * * * **
8202555 AAAAAAAAA-TTGTTATATATCATGTTTAAGGTGTTTAACTCGAAGAGTTTATGTTTTAATGAAA
1 AAAAAAAAAGTTGTTACATATCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
* ** * *
8202619 TACAAA-AGTAGAGACCAAGTTACATGTCATATTTAAAAAATATTGTTA
66 TACAAAGA-TAAAGACCAAGTTACACATCATATTGAAAAAAAATTGTTA
8202667 TCATACGCCA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
124 14 0.14
125 74 0.76
126 9 0.09
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.34
Consensus pattern (125 bp):
AAAAAAAAAGTTGTTACATATCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
TACAAAGATAAAGACCAAGTTACACATCATATTGAAAAAAAATTGTTACACGTTATATTG
Found at i:8202686 original size:125 final size:125
Alignment explanation
Indices: 8202429--8202706 Score: 296
Period size: 125 Copynumber: 2.2 Consensus size: 125
8202419 ACCATGTTGA
*
8202429 AAAAAAAAAGTTGTTACATGTCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
1 AAAAAAAAAGTTGTTACATATCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
* * ** *
8202494 TACAAAGATAAAGACCAAGTTACACATTATGTTGAAAAAAAAATTGTTACACGTTATATT
66 TACAAAGATAAAGACCAAGTTACACATCATATTGAAAAAAAAATTGTTACACGCCATACT
* * * * **
8202554 GAAAAAAAAA-TTGTTATATATCATGTTTAAGGTGTTTAACTCGAAGAGTTTATGTTTTAATGAA
1 -AAAAAAAAAGTTGTTACATATCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAA
* ** * * *
8202618 ATACAAA-AGTAGAGACCAAGTTACATGTCATATT-TAAAAAATATTGTTATCATACGCCATGCT
65 ATACAAAGA-TAAAGACCAAGTTACACATCATATTGAAAAAAAAATTGTTA-C--ACGCCATACT
*
8202681 CAAAAAAAAA-TT-TTACATACCATGTT
1 -AAAAAAAAAGTTGTTACATATCATGTT
8202707 GAAAAAAAAA
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
124 14 0.11
125 75 0.59
126 21 0.17
127 17 0.13
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (125 bp):
AAAAAAAAAGTTGTTACATATCATGTTTAAGATGTTTAACTCCAAAAGTTTATGTACTAATGAAA
TACAAAGATAAAGACCAAGTTACACATCATATTGAAAAAAAAATTGTTACACGCCATACT
Found at i:8202723 original size:27 final size:27
Alignment explanation
Indices: 8202653--8202733 Score: 92
Period size: 26 Copynumber: 2.9 Consensus size: 27
8202643 TGTCATATTT
* *
8202653 AAAAAATATTGTTATCATACGCCATGCTCA
1 AAAAAAAATTGTTA-CATA--CCATGTTCA
*
8202683 AAAAAAAATT-TTACATACCATGTTGA
1 AAAAAAAATTGTTACATACCATGTTCA
*
8202709 AAAAAAAATTGTTACATATCATGTT
1 AAAAAAAATTGTTACATACCATGTT
8202734 TAAGGTGTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 17 0.37
27 13 0.28
28 4 0.09
29 3 0.07
30 9 0.20
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAAAAAATTGTTACATACCATGTTCA
Found at i:8202871 original size:25 final size:25
Alignment explanation
Indices: 8202790--8202873 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 25
8202780 TAGAGATCAA
* * *
8202790 GTTACATGCCATA-TTCAATAGATTT
1 GTTACATGCCA-AGTACATTAGAGTT
** *
8202815 GTTACACACGAAGTACATTAGAGTT
1 GTTACATGCCAAGTACATTAGAGTT
8202840 GTTACATGCCAAGTACATTAGAGTT
1 GTTACATGCCAAGTACATTAGAGTT
8202865 GTTACATGC
1 GTTACATGC
8202874 AAGCATGATG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
24 1 0.02
25 48 0.98
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (25 bp):
GTTACATGCCAAGTACATTAGAGTT
Found at i:8203179 original size:75 final size:75
Alignment explanation
Indices: 8203065--8203216 Score: 191
Period size: 75 Copynumber: 2.0 Consensus size: 75
8203055 AGGTGATGGT
* ** *
8203065 GATAAAATTAGAGAGAGCTGGATGGCGAGAGAGAAAAATCGGGAGTACAGTAGATAAATGT-GAG
1 GATAAAATTAGAAAGAGCTGGATGGCGAGAGAGAAAAATCAAGAGCACAGTAGATAAATGTCGA-
8203129 AGAGAGAAATC
65 AGAGAGAAATC
* * * **
8203140 GATAAAATTAGAAAGAGTTGGATGGTGAGAGA-AAGAAATCAAGAGCACCGTAGATGGATGTCGA
1 GATAAAATTAGAAAGAGCTGGATGGCGAGAGAGAA-AAATCAAGAGCACAGTAGATAAATGTCGA
8203204 AGAGAGAAATC
65 AGAGAGAAATC
8203215 GA
1 GA
8203217 GAGGAAAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
74 2 0.03
75 62 0.94
76 2 0.03
ACGTcount: A:0.44, C:0.07, G:0.32, T:0.16
Consensus pattern (75 bp):
GATAAAATTAGAAAGAGCTGGATGGCGAGAGAGAAAAATCAAGAGCACAGTAGATAAATGTCGAA
GAGAGAAATC
Found at i:8204457 original size:28 final size:29
Alignment explanation
Indices: 8204416--8204475 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
8204406 TTCTATGGGC
*
8204416 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAAGGGGCAAAAATGT
* * *
8204444 AATTTTTGACTTTTACAGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-AGGGGCAAAAATGT
8204474 AA
1 AA
8204476 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAAGGGGCAAAAATGT
Found at i:8211509 original size:2 final size:2
Alignment explanation
Indices: 8211504--8211531 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8211494 GCAAATCCTT
8211504 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8211532 TTCGTGTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8212470 original size:2 final size:2
Alignment explanation
Indices: 8212463--8212510 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
8212453 AGATTAGATA
*
8212463 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8212505 AT AT AT
1 AT AT AT
8212511 CTTTATTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8218188 original size:37 final size:35
Alignment explanation
Indices: 8218147--8218234 Score: 122
Period size: 37 Copynumber: 2.5 Consensus size: 35
8218137 TCAATTTGAT
*
8218147 AAATATTAATATTTAACTTAAAATATTTAAAAAATAA
1 AAATATTAATATTTAACTTAAAAAATTT--AAAATAA
* * *
8218184 AAATATTAATATTTAACTTAAAAAATTTTAATTTA
1 AAATATTAATATTTAACTTAAAAAATTTAAAATAA
8218219 AAATATTAATATTTAA
1 AAATATTAATATTTAA
8218235 ATTATTCAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
35 20 0.43
37 27 0.57
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (35 bp):
AAATATTAATATTTAACTTAAAAAATTTAAAATAA
Found at i:8218901 original size:14 final size:15
Alignment explanation
Indices: 8218884--8218916 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8218874 TTTCCTTTTG
8218884 TTTCTTG-TTTTTAA
1 TTTCTTGATTTTTAA
8218898 TTTCTTGAATTTTTAA
1 TTTCTTG-ATTTTTAA
8218914 TTT
1 TTT
8218917 GATTTAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
16 10 0.59
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (15 bp):
TTTCTTGATTTTTAA
Found at i:8225170 original size:7 final size:7
Alignment explanation
Indices: 8225153--8225437 Score: 181
Period size: 7 Copynumber: 40.0 Consensus size: 7
8225143 GTTTAGCAAA
8225153 TTTATGGG
1 TTTA-GGG
8225161 TTTAGGG
1 TTTAGGG
*
8225168 TTTGGGG
1 TTTAGGG
*
8225175 TTTGGGG
1 TTTAGGG
*
8225182 TTTA-GA
1 TTTAGGG
*
8225188 TGTTCGGG
1 T-TTAGGG
*
8225196 GTTAGGG
1 TTTAGGG
8225203 TTTAGGG
1 TTTAGGG
* *
8225210 GTTAGTG
1 TTTAGGG
*
8225217 TTAAGGG
1 TTTAGGG
8225224 TTTAGGG
1 TTTAGGG
8225231 TTGTAGGG
1 TT-TAGGG
*
8225239 TTTGGGG
1 TTTAGGG
*
8225246 TTTTATGGT
1 -TTTA-GGG
*
8225255 TTTAGGT
1 TTTAGGG
8225262 TTTAGGG
1 TTTAGGG
*
8225269 TTTCGGGG
1 TTT-AGGG
*
8225277 TTTGGGG
1 TTTAGGG
**
8225284 TTCGGGG
1 TTTAGGG
8225291 TTT-GGG
1 TTTAGGG
8225297 TTTAGGG
1 TTTAGGG
8225304 -TTAGGG
1 TTTAGGG
8225310 TTTAGGGG
1 TTTA-GGG
*
8225318 TTAAGGG
1 TTTAGGG
8225325 -TTAGGG
1 TTTAGGG
8225331 TTTAGGGG
1 TTTA-GGG
*
8225339 TTTAAGG
1 TTTAGGG
8225346 TTTAAGGG
1 TTT-AGGG
*
8225354 -TTCGGG
1 TTTAGGG
*
8225360 GTTACGGG
1 TTTA-GGG
8225368 -TTACGGG
1 TTTA-GGG
* *
8225375 GTTACGAG
1 TTTA-GGG
8225383 -TTAGGG
1 TTTAGGG
8225389 -TTAGGG
1 TTTAGGG
*
8225395 GTTAGGGG
1 TTTA-GGG
8225403 TTTAGGG
1 TTTAGGG
8225410 TTTAGGG
1 TTTAGGG
* *
8225417 GTTAAGG
1 TTTAGGG
8225424 TTTAGGG
1 TTTAGGG
8225431 TTTAGGG
1 TTTAGGG
8225438 GTGAAGGGTT
Statistics
Matches: 226, Mismatches: 34, Indels: 35
0.77 0.12 0.12
Matches are distributed among these distances:
6 30 0.13
7 138 0.61
8 56 0.25
9 2 0.01
ACGTcount: A:0.13, C:0.02, G:0.45, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:8225349 original size:15 final size:13
Alignment explanation
Indices: 8225194--8225461 Score: 119
Period size: 15 Copynumber: 18.8 Consensus size: 13
8225184 TAGATGTTCG
8225194 GGGTTAGGGTTTA
1 GGGTTAGGGTTTA
* *
8225207 GGGGTTAGTGTTAA
1 -GGGTTAGGGTTTA
8225221 GGGTTTAGGGTTGTA
1 GGG-TTAGGGTT-TA
*
8225236 GGGTTTGGGGTTTTA
1 GGG-TTAGGG-TTTA
* *
8225251 TGGTTTTAGGTTTTA
1 -GG-GTTAGGGTTTA
* *
8225266 GGGTTTCGGGGTTTG
1 GGG-TT-AGGGTTTA
*
8225281 GGGTTCGGGGTTT-
1 GGGTT-AGGGTTTA
8225294 GGGTTTAGGG-TTA
1 GGG-TTAGGGTTTA
*
8225307 GGGTTTAGGGGTTAA
1 GGG-TTA-GGGTTTA
8225322 GGGTTAGGGTTTA
1 GGGTTAGGGTTTA
*
8225335 GGGGTTTAAGGTTTAA
1 -GGG-TTAGGGTTT-A
* *
8225351 GGGTTCGGGGTTA
1 GGGTTAGGGTTTA
*
8225364 CGGGTTACGGGGTTA
1 -GGGTTA-GGGTTTA
*
8225379 CGAGTTAGGG-TTA
1 -GGGTTAGGGTTTA
8225392 GGGGTTAGGGGTTTA
1 -GGGTTA-GGGTTTA
*
8225407 GGGTTTAGGGGTTAA
1 GGG-TTA-GGGTTTA
*
8225422 GGTTTAGGGTTTA
1 GGGTTAGGGTTTA
* *
8225435 GGGGTGAAGGGTTCGA
1 -GGGT-TAGGGTT-TA
8225451 GGGTTAGGGTT
1 GGGTTAGGGTT
8225462 CAGGTTTCAG
Statistics
Matches: 202, Mismatches: 30, Indels: 44
0.73 0.11 0.16
Matches are distributed among these distances:
12 2 0.01
13 37 0.18
14 75 0.37
15 78 0.39
16 10 0.05
ACGTcount: A:0.14, C:0.03, G:0.46, T:0.37
Consensus pattern (13 bp):
GGGTTAGGGTTTA
Found at i:8230681 original size:7 final size:7
Alignment explanation
Indices: 8230669--8230848 Score: 123
Period size: 7 Copynumber: 25.9 Consensus size: 7
8230659 CCTTCTTGGC
8230669 TTAGGGT
1 TTAGGGT
8230676 TTAGGGT
1 TTAGGGT
8230683 TTAGGGT
1 TTAGGGT
*
8230690 TTAGGGG
1 TTAGGGT
*
8230697 TTAGGGG
1 TTAGGGT
8230704 TTAGGGT
1 TTAGGGT
*
8230711 TGAGGGT
1 TTAGGGT
*
8230718 TGAGGGT
1 TTAGGGT
*
8230725 GTAGGGT
1 TTAGGGT
*
8230732 GTAGGGT
1 TTAGGGT
*
8230739 GTAGGGT
1 TTAGGGT
*
8230746 TTGGGGT
1 TTAGGGT
*
8230753 TTGGGGT
1 TTAGGGT
* *
8230760 TTTGGGC
1 TTAGGGT
8230767 TTAGGGGT
1 TTA-GGGT
*
8230775 TTTGGG-
1 TTAGGGT
*
8230781 TTAGGGG
1 TTAGGGT
*
8230788 TTGGGGT
1 TTAGGGT
*
8230795 TT-GGAGG
1 TTAGG-GT
*
8230802 TTGGGGT
1 TTAGGGT
**
8230809 TGGGGGT
1 TTAGGGT
*
8230816 TTGGGGT
1 TTAGGGT
8230823 TT-GGGT
1 TTAGGGT
*
8230829 TGAGGGT
1 TTAGGGT
*
8230836 TGAGGGT
1 TTAGGGT
*
8230843 TGAGGG
1 TTAGGG
8230849 GTGAGGGGTG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
6 12 0.08
7 129 0.87
8 7 0.05
ACGTcount: A:0.09, C:0.01, G:0.54, T:0.36
Consensus pattern (7 bp):
TTAGGGT
Found at i:8230853 original size:7 final size:7
Alignment explanation
Indices: 8230829--8230871 Score: 68
Period size: 7 Copynumber: 6.1 Consensus size: 7
8230819 GGGTTTGGGT
*
8230829 TGAGGGT
1 TGAGGGG
*
8230836 TGAGGGT
1 TGAGGGG
8230843 TGAGGGG
1 TGAGGGG
8230850 TGAGGGG
1 TGAGGGG
8230857 TGAGGGG
1 TGAGGGG
8230864 TGAGGGG
1 TGAGGGG
8230871 T
1 T
8230872 TANNNNNNNN
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.14, C:0.00, G:0.65, T:0.21
Consensus pattern (7 bp):
TGAGGGG
Found at i:8231403 original size:20 final size:21
Alignment explanation
Indices: 8231378--8231418 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8231368 AAAGCATTTC
8231378 AAATTAT-ATATATATTTTTG
1 AAATTATAATATATATTTTTG
*
8231398 AAATTATGAATATTTATTTTT
1 AAATTAT-AATATATATTTTT
8231419 TTAAAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
AAATTATAATATATATTTTTG
Found at i:8251293 original size:18 final size:18
Alignment explanation
Indices: 8251270--8251308 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
8251260 AGTTTGTGCA
8251270 CTCACATAGCATACCACT
1 CTCACATAGCATACCACT
8251288 CTCACATAGCATACCACT
1 CTCACATAGCATACCACT
8251306 CTC
1 CTC
8251309 GCCATCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.41, G:0.05, T:0.23
Consensus pattern (18 bp):
CTCACATAGCATACCACT
Found at i:8251324 original size:36 final size:36
Alignment explanation
Indices: 8251284--8251403 Score: 95
Period size: 36 Copynumber: 3.3 Consensus size: 36
8251274 CATAGCATAC
*
8251284 CACTCTCACATAGCATACCACTCTCGCCATCATGTA
1 CACTCCCACATAGCATACCACTCTCGCCATCATGTA
* ** * ** *
8251320 CACTCCCACATCGCACATGGCA-TAT-ATCATCAGTTTGTG
1 CACTCCCACATAG--CATACCACTCTCGCCATCA---TGTA
8251359 CACT--CACATAGCATACCACTCTCGCCATCATGTA
1 CACTCCCACATAGCATACCACTCTCGCCATCATGTA
8251393 CACTCCCACAT
1 CACTCCCACAT
8251404 CTCACATGGC
Statistics
Matches: 60, Mismatches: 15, Indels: 18
0.65 0.16 0.19
Matches are distributed among these distances:
34 7 0.12
35 5 0.08
36 23 0.38
37 13 0.22
38 5 0.08
39 7 0.12
ACGTcount: A:0.28, C:0.38, G:0.10, T:0.25
Consensus pattern (36 bp):
CACTCCCACATAGCATACCACTCTCGCCATCATGTA
Found at i:8251352 original size:91 final size:91
Alignment explanation
Indices: 8251197--8251381 Score: 334
Period size: 91 Copynumber: 2.0 Consensus size: 91
8251187 AGTGTGTGCA
*
8251197 CTCACACAGCACACGACTATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
1 CTCACACAGCACACCACTATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
8251262 TTTGTGCACTCACATAGCATACCACT
66 TTTGTGCACTCACATAGCATACCACT
* * *
8251288 CTCACATAGCATACCACTCTCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
1 CTCACACAGCACACCACTATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
8251353 TTTGTGCACTCACATAGCATACCACT
66 TTTGTGCACTCACATAGCATACCACT
8251379 CTC
1 CTC
8251382 GCCATCATGT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.29, C:0.36, G:0.11, T:0.24
Consensus pattern (91 bp):
CTCACACAGCACACCACTATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
TTTGTGCACTCACATAGCATACCACT
Found at i:8251375 original size:73 final size:73
Alignment explanation
Indices: 8251288--8251449 Score: 288
Period size: 73 Copynumber: 2.2 Consensus size: 73
8251278 GCATACCACT
8251288 CTCACATAGCATACCACTCTCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
1 CTCACATAGCATACCACTCTCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
*
8251353 TTTGTGCA
66 TGTGTGCA
*
8251361 CTCACATAGCATACCACTCTCGCCATCATGTACACTCCCACATCTCACATGGCATATATCATCAG
1 CTCACATAGCATACCACTCTCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
8251426 TGTGTGCA
66 TGTGTGCA
* *
8251434 CTCACACAGCACACCA
1 CTCACATAGCATACCA
8251450 TTATCATCAG
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 85 1.00
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.24
Consensus pattern (73 bp):
CTCACATAGCATACCACTCTCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAG
TGTGTGCA
Found at i:8251439 original size:164 final size:164
Alignment explanation
Indices: 8251149--8251449 Score: 476
Period size: 164 Copynumber: 1.8 Consensus size: 164
8251139 TCTCACCAGC
* * * * *
8251149 TCATGTGCACTTCCACGTTGCACATGGCATATAGCATCAGTGTGTGCACTCACACAGCACACGAC
1 TCATGTACACTCCCACATCGCACATGGCATATAGCATCAGTGTGTGCACTCACACAGCACACCAC
* *
8251214 TATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAGTTTGTGCACTCACATAG
66 TATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAGTGTGTGCACTCACACAG
*
8251279 CATACCACTCTCACATAGCATACCACTCTCGCCA
131 CACACCACTCTCACATAGCATACCACTCTCGCCA
* * * *
8251313 TCATGTACACTCCCACATCGCACATGGCATATATCATCAGTTTGTGCACTCACATAGCATACCAC
1 TCATGTACACTCCCACATCGCACATGGCATATAGCATCAGTGTGTGCACTCACACAGCACACCAC
* *
8251378 TCTCGCCATCATGTACACTCCCACATCTCACATGGCATATATCATCAGTGTGTGCACTCACACAG
66 TATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAGTGTGTGCACTCACACAG
8251443 CACACCA
131 CACACCA
8251450 TTATCATCAG
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
164 123 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.25
Consensus pattern (164 bp):
TCATGTACACTCCCACATCGCACATGGCATATAGCATCAGTGTGTGCACTCACACAGCACACCAC
TATCGCCATCATGTACACTCCCACATCGCACATGGCATATATCATCAGTGTGTGCACTCACACAG
CACACCACTCTCACATAGCATACCACTCTCGCCA
Found at i:8251499 original size:43 final size:43
Alignment explanation
Indices: 8251452--8251542 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
8251442 GCACACCATT
* *
8251452 ATCATCAGCTCATGTGCATTCCTACATCACACATAGCT-GAGTC
1 ATCATCAGCTCATGTGCACTCCTACAACACACATAGCTAG-GTC
*
8251495 ATCATCAGCTCATGTGCACTCCTACAACGCACATAGCTAGGTC
1 ATCATCAGCTCATGTGCACTCCTACAACACACATAGCTAGGTC
8251538 ATCAT
1 ATCAT
8251543 TATCACATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 43 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (43 bp):
ATCATCAGCTCATGTGCACTCCTACAACACACATAGCTAGGTC
Found at i:8251896 original size:2 final size:2
Alignment explanation
Indices: 8251889--8251914 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8251879 TCAAGGAAAG
8251889 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
8251915 AAAATGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8253790 original size:27 final size:27
Alignment explanation
Indices: 8253742--8253801 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
8253732 AAAATGGAGT
* *
8253742 AAAAAATATATATATAATAAAATTTAA
1 AAAAAATATATATATAATAAAAATGAA
8253769 AAAAAATA-ATA-ATAATGAAAAAATGAA
1 AAAAAATATATATATAAT--AAAAATGAA
8253796 AAAAAA
1 AAAAAA
8253802 AATGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 5 0.17
26 3 0.10
27 21 0.72
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (27 bp):
AAAAAATATATATATAATAAAAATGAA
Found at i:8253803 original size:12 final size:12
Alignment explanation
Indices: 8253786--8253811 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8253776 AATAATAATG
8253786 AAAAAATGAAAA
1 AAAAAATGAAAA
8253798 AAAAAATGAAAA
1 AAAAAATGAAAA
8253810 AA
1 AA
8253812 GAAAGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAATGAAAA
Found at i:8255540 original size:16 final size:17
Alignment explanation
Indices: 8255519--8255555 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
8255509 TCGCTTATGA
*
8255519 AAAATATAATAATA-AT
1 AAAATATAAGAATATAT
8255535 AAAATATAAGAATATAT
1 AAAATATAAGAATATAT
8255552 AAAA
1 AAAA
8255556 ATAGTACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (17 bp):
AAAATATAAGAATATAT
Found at i:8255683 original size:18 final size:19
Alignment explanation
Indices: 8255662--8255731 Score: 54
Period size: 18 Copynumber: 3.7 Consensus size: 19
8255652 AATGTAAAGT
*
8255662 ATAAAAAATAAAATA-ACA
1 ATAAAAAATAAAATAGAAA
*
8255680 ATAATAAATAAGAATAGAAA
1 ATAAAAAATAA-AATAGAAA
* * * *
8255700 ATATGATAATAAAATATATA
1 ATA-AAAAATAAAATAGAAA
8255720 AT-AAAAATAAAA
1 ATAAAAAATAAAA
8255732 ATAATTAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
18 18 0.45
19 4 0.10
20 13 0.32
21 5 0.12
ACGTcount: A:0.71, C:0.01, G:0.04, T:0.23
Consensus pattern (19 bp):
ATAAAAAATAAAATAGAAA
Found at i:8255690 original size:13 final size:13
Alignment explanation
Indices: 8255672--8255745 Score: 55
Period size: 13 Copynumber: 5.7 Consensus size: 13
8255662 ATAAAAAATA
*
8255672 AAATAACAATAAT
1 AAATAATAATAAT
*
8255685 AAATAAGAATAGA-
1 AAATAATAATA-AT
*
8255698 AAAT-ATGATAAT
1 AAATAATAATAAT
8255710 AAAATATATAATAA-
1 -AAATA-ATAATAAT
*
8255724 AAATAAAAATAAT
1 AAATAATAATAAT
*
8255737 TAATAATAA
1 AAATAATAA
8255746 CAAAAAATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
11 1 0.02
12 10 0.21
13 30 0.62
14 1 0.02
15 6 0.12
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.26
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:8255722 original size:12 final size:13
Alignment explanation
Indices: 8255697--8255725 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8255687 ATAAGAATAG
8255697 AAAATATGATAAT
1 AAAATATGATAAT
8255710 AAAATAT-ATAAT
1 AAAATATGATAAT
8255722 AAAA
1 AAAA
8255726 ATAAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
AAAATATGATAAT
Found at i:8255734 original size:19 final size:21
Alignment explanation
Indices: 8255710--8255756 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
8255700 ATATGATAAT
8255710 AAAATATA-TAATAA-AA-ATA
1 AAAATATATTAATAATAACA-A
8255729 AAAATA-ATTAATAATAACAA
1 AAAATATATTAATAATAACAA
8255749 AAAATATA
1 AAAATATA
8255757 GACAATTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.04
19 12 0.50
20 9 0.38
21 2 0.08
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATATATTAATAATAACAA
Found at i:8258626 original size:4 final size:4
Alignment explanation
Indices: 8258606--8258664 Score: 50
Period size: 4 Copynumber: 14.2 Consensus size: 4
8258596 AGAAGAAAAG
*
8258606 AGAA AGGAA AGGAA AGAA AG-A AGAA A-AG AGAA AGGAA AGTAA AGAA
1 AGAA A-GAA A-GAA AGAA AGAA AGAA AGAA AGAA A-GAA AG-AA AGAA
*
8258652 AGAA ATAA AGAA A
1 AGAA AGAA AGAA A
8258665 AAGAGAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
3 5 0.11
4 24 0.52
5 17 0.37
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.03
Consensus pattern (4 bp):
AGAA
Found at i:8258627 original size:28 final size:28
Alignment explanation
Indices: 8258595--8258672 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
8258585 ACCCATAACC
8258595 AAGAAGAAAAGAGAAAGGAAAGGAAAGA
1 AAGAAGAAAAGAGAAAGGAAAGGAAAGA
*
8258623 AAGAAGAAAAGAGAAAGGAAAGTAAAGA
1 AAGAAGAAAAGAGAAAGGAAAGGAAAGA
*
8258651 AAGAA-ATAAAGAAAAAGAGAAA
1 AAGAAGA-AAAGAGAAAG-GAAA
8258673 AAGGAAGGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 1 0.02
28 41 0.89
29 4 0.09
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.03
Consensus pattern (28 bp):
AAGAAGAAAAGAGAAAGGAAAGGAAAGA
Found at i:8258638 original size:23 final size:24
Alignment explanation
Indices: 8258602--8258656 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
8258592 ACCAAGAAGA
8258602 AAAGAGAAAGGAAAGGAAAG-AAAG
1 AAAGA-AAAGGAAAGGAAAGTAAAG
8258626 -AAGAAAAGAGAAAGGAAAGTAAAG
1 AAAGAAAAG-GAAAGGAAAGTAAAG
8258650 AAAGAAA
1 AAAGAAA
8258657 TAAAGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.14
23 14 0.50
24 4 0.14
25 6 0.21
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (24 bp):
AAAGAAAAGGAAAGGAAAGTAAAG
Found at i:8260742 original size:171 final size:171
Alignment explanation
Indices: 8260295--8262124 Score: 2026
Period size: 171 Copynumber: 10.7 Consensus size: 171
8260285 TTATAATAAT
* * **
8260295 CGAAAGCCATCGATTGATAAGAAAAGTCCA-TT-TA-T-ACTCATGCCTTCAAAAGCCTT-TTCA
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATT-A
** * * * * * *
8260355 CTCACTTTAAATAATTTTATAATCTTATTATTAATTTTTAGTTGAATATTTTTACATTTTTTGTG
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT
* * * * * *
8260420 CAAACAGGTTATAAATGAATGTTTACC-TCAGGAAATGT-AAGG
130 AAAACAGATTATAATTGAATGTTTGCCTTGA-GAAACGTGAA-G
* * * * * *
8260462 CTAAAATCC-T-CAGTTGATAGGAAAAGCCCATTTATAGTCAC-CATGCC-TTCAGAAGCCTTAT
1 C-GAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTTAT
* * *
8260523 TGCTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGG
63 TACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGG
* * * * *
8260588 TTAAAACATAATATAATTGAACGTTTACCTTGGGAAACGTGAAG
128 TTAAAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
* * *
8260632 CGAAAGCCATCCAATGACAAGAAATGTCCATTTATAGTCACTCATGCCTTTGAAATCCTTATTAC
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
* * ** *
8260697 TCACTTTAAATGGTTTTATAATCTCATTATTAACTTTGGGTTGAATTTTCTTACATTTTTGGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
* * * * *
8260762 AAACAAATTATAATTGAATGTTTACCTCGGGAAACATGAAG
131 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
* * * * * * * *
8260803 CAAAAGCTATCGATTAACAAGAAAAGTTCGTTTATTGTCACTCATG-CTTTCAAAAGCCTTATTA
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAGCCTTATTA
* *
8260867 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGCTGAATTTTCTTACATTTTTGGCT
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGG-T
* * * *
8260932 AAAAACAGATCATAATTGAATGTTTGCCTCT-AGAAACATGAAA
129 TAAAACAGATTATAATTGAATGTTTGCCT-TGAGAAACGTGAAG
* * *
8260975 CGAAAGCCATCAATTGGCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
* * * *
8261040 TCACTTTAAATGGTTTTGTAATCTCATTATTGACTTTAGGTTGAATTTTCTTACATTTTTGGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
* * * *
8261105 AAACAGATTATAATTGAATGTTTGCCTGGGGAAATGTGAGG
131 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
* * * * *
8261146 CTAAAACCGTCCATTGA-AAGGAAAAGTCCATTTATAGTCAATCATGCCTTT-AGTAGCCTTATT
1 CGAAAGCCATCCATTGACAA-GAAAAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTTATT
* * * * * **
8261209 ACTCACTTAAAATAGATTTATAATCTCATAATTGAATTTAAGTTGAATTTTTTTACATTTTTGAA
64 ACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGT
* ** * *
8261274 TAAGAA-AGTTTATAATCAAATGTTTGCCTTGAGACACCTGAAG
129 TAA-AACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
* * * ** * *
8261317 CGAAAGCCATCGATGGACAAGACAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATTGC
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
** * * *
8261382 TTGCTTTAATTGGTTTTATAATCTCATTATTGATTTCAAGTTGAA-TTTTTTACATTTTTTGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
* * *
8261446 AAACAGATTATAATTGAATGTTTGTCTTGAAAAACGTGAGG
131 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
* * * * * * * * *
8261487 CTAAAACCCTCCGTTGATAGGAAAAGACCATTAATAGTCACCCATGCCTTTGAAAGCCTTATTAC
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
* * * *
8261552 TCGCTTTAAATGGTTTTATGATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTTGGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
**
8261617 AAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAG
131 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
* * * * *
8261658 AGAAAGCCATCGATTGACAAGAAAAGTCCATTTATACTCACTCATACCTTTGAAAGCTTTATTAC
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
* * * * *
8261723 TCCCTTTAAATGGTTTTATCATCTCATTATTGATTTGAAGTTGAATTTTCTCACATTTTTGGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
*
8261788 AAACAGATTATAGTTGAATGTTTGCCTT-AGGAAACGTGAAG
131 AAACAGATTATAATTGAATGTTTGCCTTGA-GAAACGTGAAG
* * * *
8261829 CGAAAGCCATCGATTGACAAGAAAAGTCCATTTACAGTTACTCATGCCTTCGAAAGCCTTATTAC
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
* * * * **
8261894 TCACTTTAAATGATTTTATAATCTGATTATTGATTTTAAGTTGAATTGTTTTACATTTTTTGTGC
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
* * *
8261959 AAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAGG
131 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
** * * * * *
8262000 TTAAA-CCCTCCATTGTCAAGAAAAGACCATTTATAGTCACTCATGCC-TTCAGAAGCCTTATTG
1 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTTATTA
* * * *
8262063 CTCGCTTAAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTG
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTG
8262125 NNNNNNNNNN
Statistics
Matches: 1391, Mismatches: 243, Indels: 55
0.82 0.14 0.03
Matches are distributed among these distances:
166 1 0.00
167 17 0.01
168 7 0.01
169 13 0.01
170 366 0.26
171 830 0.60
172 154 0.11
173 3 0.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (171 bp):
CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC
TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA
AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAAG
Found at i:8261551 original size:341 final size:341
Alignment explanation
Indices: 8260295--8262124 Score: 2039
Period size: 341 Copynumber: 5.4 Consensus size: 341
8260285 TTATAATAAT
* * * *
8260295 CGAAAGCCATCGATTGATAAGAAAAGTCCA-TT-TA-T-ACTCATGCCTTCAAAAGCCTT-TTCA
1 CGAAAGCCATCAATGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATT-A
** * * * *
8260355 CTCACTTTAAATAATTTTATAATCTTATTATTAATTTTTAGTTGAATATTT-TTACATTTTTTGT
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGA-TTTAAGTTGAAT-TTTCTTACATTTTTGGT
** * * * * * * * * *
8260419 GCAAACAGGTTATAAATGAATGTTTACC-TCAGGAAATGTAAGGCTAAAATCCTCAGTTGATAGG
128 TAAAACAGATTATAATTGAATGTTTGCCTTGA-GAAACGTGAGGCTAAAACCCTCCGTTGACAGG
* * * *
8260483 AAAAGCCCATTTATAGTCAC-CATGCC-TTCAGAAGCCTTATTGCTCACTTAAAATGGTTTTATA
192 AAAAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTTATTACTCACTTTAAATGGTTTTATA
* * * *
8260546 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACATAATATAATTGAACG
256 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* *
8260611 TTTACCTTGGGAAACGTGAAG
321 TTTGCCTTGAGAAACGTGAAG
* * *
8260632 CGAAAGCCATCCAAT-GACAAGAAATGTCCATTTATAGTCACTCATGCCTTTGAAATCCTTATTA
1 CGAAAGCCAT-CAATGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* **
8260696 CTCACTTTAAATGGTTTTATAATCTCATTATTAACTTTGGGTTGAATTTTCTTACATTTTTGGTT
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGA-TTTAAGTTGAATTTTCTTACATTTTTGGTT
* * * * * * * * * *
8260761 AAAACAAATTATAATTGAATGTTTACCTCGGGAAACATGAAGC-AAAA-GCTATCGATTAACAAG
129 AAAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCT-CCG-TTGACAGG
* * * *
8260824 AAAAGTTCGTTTATTGTCACTCATG-CTTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATA
192 AAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAGCCTTATTACTCACTTTAAATGGTTTTATA
* * * *
8260888 ATCTCATTATTGATTTTAAGCTGAATTTTCTTACATTTTTGGCTAAAAACAGATCATAATTGAAT
256 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGG-TTAAAACAGATTATAATTGAAT
* *
8260953 GTTTGCCTCT-AGAAACATGAAA
320 GTTTGCCT-TGAGAAACGTGAAG
8260975 CGAAAGCCATCAATTGG-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
1 CGAAAGCCATCAA-TGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* *
8261039 CTCACTTTAAATGGTTTTGTAATCTCATTATTGACTTTAGGTTGAATTTTCTTACATTTTTGGTT
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGA-TTTAAGTTGAATTTTCTTACATTTTTGGTT
* * * * * *
8261104 AAAACAGATTATAATTGAATGTTTGCCTGGGGAAATGTGAGGCTAAAACCGTCCATTGAAAGGAA
129 AAAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCTCCGTTGACAGGAA
* * * * *
8261169 AAGTCCATTTATAGTCAATCATGCCTTT-AGTAGCCTTATTACTCACTTAAAATAGATTTATAAT
194 AAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTTATTACTCACTTTAAATGGTTTTATAAT
* * ** * **
8261233 CTCATAATTGAATTTAAGTTGAATTTTTTTACATTTTTGAATAAGAA-AGTTTATAATCAAATGT
258 CTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGT
* *
8261297 TTGCCTTGAGACACCTGAAG
322 TTGCCTTGAGAAACGTGAAG
* * ** *
8261317 CGAAAGCCATCGATGGACAAGACAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATTGC
1 CGAAAGCCATCAATGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
** * *
8261382 TTGCTTTAATTGGTTTTATAATCTCATTATTGATTTCAAGTTGAATTTT-TTACATTTTTTGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTT-AAGTTGAATTTTCTTACATTTTTGGTTA
* * *
8261446 AAACAGATTATAATTGAATGTTTGTCTTGAAAAACGTGAGGCTAAAACCCTCCGTTGATAGGAAA
130 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCTCCGTTGACAGGAAA
* * * * *
8261511 AGACCATTAATAGTCACCCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATGATCT
195 AGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
* *
8261576 CATTATTGATTTTAAGTTGAATTTTCTTAAATTTTTGGTTAAAACAGATTATAATTGAATGTTTG
260 CATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTG
**
8261641 CCTCAAGAAACGTGAAG
325 CCTTGAGAAACGTGAAG
* * * * * * *
8261658 AGAAAGCCATCGATTGACAAGAAAAGTCCATTTATACTCACTCATACCTTTGAAAGCTTTATTAC
1 CGAAAGCCATCAATGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
* * *
8261723 TCCCTTTAAATGGTTTTATCATCTCATTATTGATTTGAAGTTGAATTTTCTCACATTTTTGGTTA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTT-AAGTTGAATTTTCTTACATTTTTGGTTA
* * * * * *
8261788 AAACAGATTATAGTTGAATGTTTGCCTT-AGGAAACGTGAAGCGAAAGCCAT-CGATTGACAAGA
130 AAACAGATTATAATTGAATGTTTGCCTTGA-GAAACGTGAGGCTAAAACCCTCCG-TTGACAGGA
* * * *
8261851 AAAGTCCATTTACAGTTACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGATTTTATAAT
193 AAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAAT
* * * **
8261916 CTGATTATTGATTTTAAGTTGAATTGTTTTACATTTTTTGTGCAAACAGATTATAATTGAATGTT
258 CTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTT
* * *
8261981 TACCTCGAGAAACGTGAGG
323 TGCCTTGAGAAACGTGAAG
** * * * * * *
8262000 TTAAA-CCCTCCATTGTCAAGAAAAGACCATTTATAGTCACTCATGCCTTC-AGAAGCCTTATTG
1 CGAAAGCCATCAATGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTA
* * * * *
8262063 CTCGCTTAAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTG
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGA-TTTAAGTTGAATTTTCTTACATTTTTG
8262125 NNNNNNNNNN
Statistics
Matches: 1265, Mismatches: 196, Indels: 60
0.83 0.13 0.04
Matches are distributed among these distances:
337 23 0.02
338 5 0.00
339 4 0.00
340 12 0.01
341 522 0.41
342 406 0.32
343 281 0.22
344 11 0.01
345 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (341 bp):
CGAAAGCCATCAATGGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
TCACTTTAAATGGTTTTATAATCTCATTATTGATTTAAGTTGAATTTTCTTACATTTTTGGTTAA
AACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCTCCGTTGACAGGAAAA
GTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTC
ATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGC
CTTGAGAAACGTGAAG
Found at i:8261686 original size:512 final size:512
Alignment explanation
Indices: 8260295--8262124 Score: 2213
Period size: 512 Copynumber: 3.6 Consensus size: 512
8260285 TTATAATAAT
* ** *
8260295 CGAAAGCCATCGATTGATAAGAAAAGTC-CATT-TA-T-ACTCATGCCTTCAAAAGCCTT-TTCA
1 CGAAAGCCATCGATTGACAAGAAAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATT-A
** * * *
8260355 CTCACTTTAAATAATTTTATAATCTTATTATTAATTTTTAGTTGAATATTTTTACATTTTTTGTG
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT-TTTTTACATTTTTTGTG
* * * * * * * * * *
8260420 CAAACAGGTTATAAATGAATGTTTACC-TCAGGAAATGTAAGGCTAAAATCCTCAGTTGATAGGA
129 AAAACAGATTATAATTGAATGTTTGCCTTGA-GAAACGTGAGGCTAAAACCCTCAATTGATAAGA
* *
8260484 AAAGCCCATTTATAGTCA-CCATGCCTTCAGAAGCCTTATTGCTCACTTAAAATGGTTTTATAAT
193 AAAGACCATTTATAGTCACCCATGCCTTCAGAAGCCTTATTACTCACTTAAAATGGTTTTATAAT
* * * *
8260548 CTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACATAATATAATTGAACGTT
258 CTCATAATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTT
* * * *
8260613 TACCTTGGGAAACGTGAAGCGAAAGCCATCCAATGACAAGAAATGTCCATTTATAGTCACTCATG
323 TGCCTCGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* **
8260678 CCTTTGAAATCCTTATTACTCACTTTAAATGGTTTTATAATCTCATTATT-AACTTTGGGTTGAA
388 CCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATTATTGAA-TTTAAGTTGAA
* * * *
8260742 TTTTCTTACATTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCGGGAAACATGAAG
452 TTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAG
* * * * * *
8260803 CAAAAGCTATCGATTAACAAGAAAAGT-TCGTTTATTGTCACTCATGCTTTCAAAAGCCTTATTA
1 CGAAAGCCATCGATTGACAAGAAAAGTCT-GTTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* *
8260867 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGCTGAATTTTCTTACATTTTTGGCT
65 CTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT-TTACATTTTTTG-T
* * * ** * * * **
8260932 AAAAACAGATCATAATTGAATGTTTGCCTCT-AGAAACATGAAACGAAAGCCATCAATTGGCAAG
128 GAAAACAGATTATAATTGAATGTTTGCCT-TGAGAAACGTGAGGCTAAAACCCTCAATTGATAAG
* * * *
8260996 AAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTCACTTTAAATGGTTTTGTA
192 AAAAGACCATTTATAGTCACCCATGCCTTCAG-AAGCCTTATTACTCACTTAAAATGGTTTTATA
* * *
8261060 ATCTCATTATTGACTTTAGGTTGAATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATG
256 ATCTCATAATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* * * * * * *
8261125 TTTGCCTGGGGAAATGTGAGGCTAAAACCGTCCATTGA-AAGGAAAAGTCCATTTATAGTCAATC
321 TTTGCCTCGGGAAACGTGAAGCGAAAGCCATCCATTGACAA-GAAAAGTCCATTTATAGTCACTC
* * * * *
8261189 ATGCCTTT-AGTAGCCTTATTACTCACTTAAAATAGATTTATAATCTCATAATTGAATTTAAGTT
385 ATGCCTTTGA-AAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATTATTGAATTTAAGTT
* ** * ** * *
8261253 GAATTTTTTTACATTTTTGAATAAGAA-AGTTTATAATCAAATGTTTGCCTTGAGACACCTGAAG
449 GAATTTTCTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAG
* * *
8261317 CGAAAGCCATCGATGGACAAGACAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATTGC
1 CGAAAGCCATCGATTGACAAGAAAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
** * * *
8261382 TTGCTTTAATTGGTTTTATAATCTCATTATTGATTTCAAGTTGAATTTTTTACATTTTTTGTTAA
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTACATTTTTTGTGAA
* * ** *
8261447 AACAGATTATAATTGAATGTTTGTCTTGAAAAACGTGAGGCTAAAACCCTCCGTTGATAGGAAAA
131 AACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCTCAATTGATAAGAAAA
* * * * *
8261512 GACCATTAATAGTCACCCATGCCTT-TGAAAGCCTTATTACTCGCTTTAAATGGTTTTATGATCT
196 GACCATTTATAGTCACCCATGCCTTCAG-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCT
* *
8261576 CATTATTGATTTTAAGTTGAATTTTCTTAAATTTTTGGTTAAAACAGATTATAATTGAATGTTTG
260 CATAATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTG
** * * * *
8261641 CCTCAAGAAACGTGAAGAGAAAGCCATCGATTGACAAGAAAAGTCCATTTATACTCACTCATACC
325 CCTCGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
8261706 TTTGAAAGCTTTATTACTCCCTTTAAATGGTTTTATCATCTCATTATTG-ATTTGAAGTTGAATT
390 TTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATTATTGAATTT-AAGTTGAATT
* * *
8261770 TTCTCACATTTTTGGTTAAAACAGATTATAGTTGAATGTTTGCCTT-AGGAAACGTGAAG
454 TTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTTGA-GAAACATGAAG
** * *
8261829 CGAAAGCCATCGATTGACAAGAAAAGTCCATTTACAGTTACTCATGCCTTCGAAAGCCTTATTAC
1 CGAAAGCCATCGATTGACAAGAAAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
* * *
8261894 TCACTTTAAATGATTTTATAATCTGATTATTGATTTTAAGTTGAATTGTTTTACATTTTTTGTGC
66 TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTTACATTTTTTGTGA
* * * *
8261959 AAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAGG-TTAAACCCTCCATTG-TCAAGAA
130 AAACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCTCAATTGAT-AAGAA
* * * *
8262022 AAGACCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTGCTCGCTTAAAATAGTTTTATAATC
194 AAGACCATTTATAGTCACCCATGCCTTCAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATC
*
8262087 TCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTG
259 TCATAATTGATTTTAAGTTGAATTTTCTTACATTTTTG
8262125 NNNNNNNNNN
Statistics
Matches: 1117, Mismatches: 178, Indels: 50
0.83 0.13 0.04
Matches are distributed among these distances:
508 23 0.02
509 2 0.00
510 1 0.00
511 13 0.01
512 593 0.53
513 133 0.12
514 346 0.31
515 6 0.01
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (512 bp):
CGAAAGCCATCGATTGACAAGAAAAGTCTGTTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
TCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTACATTTTTTGTGAA
AACAGATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGCTAAAACCCTCAATTGATAAGAAAA
GACCATTTATAGTCACCCATGCCTTCAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTC
ATAATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGC
CTCGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
TTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATTATTGAATTTAAGTTGAATTTT
CTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAG
Found at i:8267708 original size:171 final size:170
Alignment explanation
Indices: 8267393--8273270 Score: 4249
Period size: 171 Copynumber: 34.2 Consensus size: 170
8267383 GGGTCGTGAC
* * * * * * *
8267393 ATTACTCGCTTGAAATGGTTTTGTAATATGATTATTGATTTTAAGCTGATTTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA-ATTTTTTTACTTTTT
* * * * * * * *
8267458 TGGTTAAAATAGATTATAATTGAATGATTGCCTTGGGAAACGTGATGCGAAAGCCTTCCATTGAC
65 TGG-TAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGAC
* *
8267523 AAGAAAAGTCCATTTATAGACACTTATGCCTTCGAAAGCCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
*
8267565 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAACTTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT-TTTACTTTTT
* * * * * * **
8267630 TGGTCAAACAGATTATAATTGAATGCTTGCCTTGAGAAACGT-ATAGCTAAAACCCTCTGTTGGT
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGA-AGCGAAAACCATCCGTTGAC
* * * ** * *
8267694 AGGAAAAGTCCATTTATTGTCACTCATGACGACAAAAGCCAT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* *
8267736 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTGTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC--TTTT
* * ** * * * **
8267801 TTGTTAAAACAGATTATACA-TGAATCTTTACCTCAAGAAACGTGAGGCTAAAACCCTTAGTTGA
64 TTGGTAAAACAGATTATA-ATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGA
* * * *
8267865 CAGGAAAAGACCATTTATAGTCACTCATACCTT-TAGAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTT
* * * * *
8267908 ATTACTTGCTTAAAATGGTTTTATAATCTCATAATTGATTTTGAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-TTTTT
* * * ** * * * *
8267973 AGTTAAGA-ATTTTATAATTAAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCATCCGTTGATA
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACA
* ***
8268037 AGAAAACTTTGTTTATAGTCACTCATGCCTTC-AGAAGCCTT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTT
* * * *
8268078 ATTGCTTGC-TTAATATGGTTTTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACTTTTT
1 ATTACTCGCTTTAA-ATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTT
* * * * * * * * * *
8268142 TGGTTAAAACATATTTTAAATAAATGTTTGCTTTGGGGAAA-GTGAAGCG-AAAGCATTCCATTA
65 TGG-TAAAACAGATTATAATTGAATGTTTACCTT-GAGAAACGTGAAGCGAAAACCA-TCCGTTG
* *
8268205 ACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCTT
127 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* *
8268249 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACTTTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * * *
8268314 GGTTAAAACAGATTATAATTGAATGATTACCTTGGGAAACGTGACGCGAAACCCTTTCATTGACA
66 GG-TAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACA
*
8268379 AGAAAAGTCCATTTATAGACACTCATGCCTTCGAAAGCCTT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* *
8268420 ATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACCTTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA-CTTTTT
* * * * * * * **
8268485 TGGTCAAACAGATTATAATTAAATGTTTACCTCGAGAAACGT-ATGGCTAAAACCCTCGGTTGGT
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGA-AGCGAAAACCATCCGTTGAC
* * ** * *
8268549 AGGAAAAGTCCATTTATTGTCACTCATGCCCACAAAAGCCAT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* *
8268591 ATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTGTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC---TTT
* * * * * * * *
8268656 TTTGTTAAAACA-ATTTATACA-TGAATCTTTACCTCGGGAAACGTGAGGCTAAAACCCTCAGTT
63 TTTGGTAAAACAGA-TTATA-ATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTT
* * * * * *
8268719 GA-TAGAAAAAGACCATTTGTAGTCACTCATACCTTTAGAAA-CCCT
126 GACAAG-AAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTT
* * * * *
8268764 ATTACTTGCTTAAAATGGTTTTATAATCTCATAATTGATTTTGAGCTGAATTGTTTTT-CATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTTTAC-TTTT
* * * ** * * *
8268828 TAGTTAAGA-ATTTTATAATTAAATGTTTACCTCGAGAAACGCGAAGC-AAAAGCCATCCGTTGA
64 TTGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAA-CCATCCGTTGA
** * *
8268891 CAAGAAAAGTCTGTTTATAGTCACTCATGTCTTCAAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * * *
8268934 ATTGCTTGC-TTAATATGGTTTTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTT
1 ATTACTCGCTTTAA-ATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTT
* * * * * * * * * *
8268998 TGGTTAAAACAGATTTTAAATAAATGTTTGCTTTGGGAAAAGTGAAGCG-AAAGCATTCCATTAA
65 TGG-TAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCA-TCCGTTGA
* *
8269062 CAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * *
8269105 ATTACTCGTTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTAAATTTTTTTA-TATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACT-TTTT
* * * * * * * *
8269169 TGGTTAAAACAGATTATAATTAAATGTTTGCATCG-GAAAACGTGACGCGAAAGCTATCCATTGA
65 TGG-TAAAACAGATTATAATTGAATGTTTACCTTGAG-AAACGTGAAGCGAAAACCATCCGTTGA
* * *
8269233 TAAGAAAAGTCCTTTTATAGTCACTCATACCTTCGAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * **
8269276 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
** ** * * * *
8269341 GGGCAAACAGATGGTAATTGAATGTTTACCTT-AGGAAACGTGTAGCTAAAACCCTCTGTTGGA-
66 GGTAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTT-GAC
* * * * * *
8269404 AGGAAAAGTTCATTTATTGTCACTTATGCCTTCAAAAGCCCT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * *
8269446 ATTATTCGCTTTAAATGGTTTTATAATCTCATTATTGATGTTAAGTTGAATTGTTTTAGATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTT-TACTTTT
* * * * * **
8269511 TTGTTAAAACAGATTATTATTGAATGTTTATC-TCAGGAAACGTG-AGGGTAAAAGCC-TTAGTT
64 TTGGTAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCG-AAAA-CCATCCGTT
* * * * **
8269573 GATAGGAAAAGACCATTTATAGTCACTCATTCCTTTAAAAGCCTT
126 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * *
8269618 ATTACTCGCTTAAAATGG--TTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
** ** * * * * **
8269681 GGTTATGA-ATTTTAGAAAT-ATATGTTTGCCTTGAGAAACATGAAGCGAAAGGCATCCGTTGAC
66 GG-TAAAACAGATTATAATTGA-ATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGAC
* * * * *
8269744 AAGAAAAGTTCGTTTACAGTCACTCATGCCTTCAAAAGCTTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * *
8269786 ATTGCTCACTTTAAATGGTTTTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-TTTTT
* * * * * * * *
8269851 TGTTAAAACTGATTATAAATGAATGTTTGCC-TCAGGAAATGTCAAGCG-AAACGCATCCATTGA
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAAC-CATCCGTTGA
*
8269914 CAAGAAAAGTTCATTTATAGTCACTCATGCC-TCTGAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTT
* * *
8269957 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * * *
8270022 GGCCAAAACAGATTATAAATGAATGTTT-GCTTTAGGAAAAGTGAAGCGAAAGCCATCCATTGAC
66 GG-TAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTTGAC
* * *
8270086 AAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGACTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* *
8270128 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-TTTTT
* * * * * * * ***
8270193 AGTTAAAACATATTATAATTGAATGTTTACCTTGGGAAACATGATGCGAAAGCCATTTATTGACA
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACA
*
8270258 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * ** * *
8270299 ATTACTCGCTTTAAATAGTTTTATAATTTGGTTATTGATTTTAAGCTGAATTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTTACTTTTT
* * * * * * * * *
8270364 TGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGACGCGAAAGCCATTCATTGATA
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACA
* *
8270429 AGAAAAGTCCATTTATAGTCACTCATACCGTCGAAAGCCATT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC-TT
** * * * * * * ** *
8270471 CATTGACAAG----AAAAGTTCATTTATAGTCAC-TCA-TGCCTTCGAAAGCCTT-ATTTCTTGC
1 -ATT-ACTCGCTTTAAATGGT--TTTATAATCTCATTATTG-ATT-TTAAG--TTGAATT-TT--
* * * * * * * ***
8270529 TTTAAATGATTTT-GTAATCTGATTACTGATTTTAAGCTGAATTTTTTTACATT--TTTA-GTGA
55 TTT-ACT-TTTTTGGTAA----A--ACAGATTATAA-TTGAA--TGTTTACCTTGAGAAACGTG-
* ** ** * ** * * *** * * * * ***
8270590 AAAC-AAATTATAATTGAATGTTTACCTTGGGAAATGT-GACGCGAAAGCCATTCATTGACAAGG
108 AAGCGAAA--ACCA-T--CCGTTGA-C--AAGAAAAGTCCA-TTTATAGTCACTCA-TGCCTTCG
8270653 AAAAGTCCATTT
163 -AAAG-CC--TT
* ** * * * *
8270665 ATAGTCACTCATGCCTTGGAAA--GACTTATTA-CTCGATTTAAATGGTTTTATAATATGATTAT
1 AT--T-ACTC--G-CTT-TAAATGGTTTTATAATCTC-A-TT-ATTGATTTTA-AGT-TGA--AT
* **** * * * * * ****
8270727 TGATTTTAAGCTAAATATTTT--TACATTTTTGGTTAAAATAG-AT-TATA-ATTGA-ATGTTTG
52 T--TTTTTA-CT---T-TTTTGGTA-A-AACAGATTATAATTGAATGTTTACCTTGAGAAACGTG
* * * ** * * * * *
8270786 CCTTAG-G-AAACGTGATGCGAAAGGCATCCATTGATAATAAAATTCCCTTTATAATCGCTCATG
108 ---AAGCGAAAAC--CATCCG--TTG-A--C------AAGAAAAGTCCATTTATAGTCACTCATG
8270849 CCTTCGAAAGCCTT
157 CCTTCGAAAGCCTT
** * * **
8270863 ATTACTCATTTTAAATGGTTTTATAGTCTCATTATTGATTTTTAAGTTGAATTTTCTTAAATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGA-TTTTAAGTTGAATTTTTTTACTTTTT
* * * * * * **
8270928 TGGTTAAACATATTATAATTGAATGTTTACC-TCAGGAAACGTGAGGCTAAAACCCTTTGTT-AG
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTTGA-
* * * *
8270991 TAGGAAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * * *
8271034 ATTACTCACTTTAAATGGTTTTATAGTCTCATTATTGATTTTAAATTAAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * * * * ** **
8271099 GGTTAAAACAGATTAAAATTGAAAGTTTGCC-TCAGGAAATGTGAAGTGAAAGCCTTCCAATGGG
66 GG-TAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTTGAC
* * **
8271163 AAGGAAAGTACATTTATAGTCACTCATGCCTTTAAAAGCCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * * *
8271205 ATTACTCGCTTTAAATGGATTTATAATCTTATTATTAATTTTAAGCTG-ATTTGTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTT-TTTTACTTTTT
* * * * * * * *
8271269 TGGTTAAAATAGATTGTAATTGAATGTTTACC-TCAGGAAACGCGACGCGAAAGCCATCCATTAA
65 TGG-TAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTTGA
* * **
8271333 CAAGAAAAGTTCTTTTATAGTGGCTCATGCCTT-GAAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG-AAAGCCTT
* * *
8271376 ATTACTCGCTTTAAATGGTTTTATAAACTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-TTTTT
* * * * * * * * *
8271441 CGTTAAAACATATTATAATTGAATGTTTACCTTGGGAAACATGACGCGAAAGCCATTCATTGACA
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACA
* **
8271506 AGAAAAGTCCATTTATAGTCACTCACGCCTTTAAAAGCCTT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * *
8271547 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTTACTTTTT
* * * * *
8271612 TGGTTAAAACAGATTATAATTGAATGTTTGCATT-AGGAAACGTGACGCGAAAGCCATCCATTGA
65 TGG-TAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTTGA
* * *
8271676 CAGGAAAAGTCCTTTTATAGTCGCTCATGCCTTCGAAAGCC--
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * * * ** *
8271717 -TTA-----TTTAAATGTTTTTATAGTCTCATTATTGATTTTAAGCTGAATTTTCTTAAATTATT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * * *
8271776 GGTCAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGTAGCTAAAACCCTCTGTTTG-TA
66 GGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCG-TTGACA
* * * *
8271840 GGAAAAGTCCATTTATTGTCACTCATACCTTCAAAAGCCTT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* *
8271881 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGATGAATTGTTTTACATGTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-T-TTT
* * * * * * * * **
8271946 TTGTTAAAACAGATTATTATTGAATTTTTATCTCGAGAAACGTGAGGCTAAAACCCTCAATTGAC
64 TTGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGAC
* * * *
8272011 AGGAAAAGACCATTTATAGTCACTCATTCCTT-TAGAAGCCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTT
** * * * *
8272053 ATTGGTCGATTCAAATGG--TTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-TTTTT
** ** ** * * * *
8272116 TATTATGA-ATTTTATAATT-ATATGTTTGA-GTAGAGAAACGTGAAGCGAAAGCCATTCGTTGA
65 TGGTAAAACAGATTATAATTGA-ATGTTT-ACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGA
* ** *
8272178 CAA-AAAAATCTGTTTATAGTCACTCATGCCTT-TAGAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTT
* * * * *
8272220 ATTACTCGCTTTAAATAGTTTTACAGTCTCATTATTGATTTTAAATTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * * *** **
8272285 GGTTAAAACAAATTATAATTGAAAGTTTACC-TCAGGAAATGTGAAGCGAAAGCCTTCTAATGGG
66 GG-TAAAACAGATTATAATTGAATGTTTACCTTGA-GAAACGTGAAGCGAAAACCATCCGTTGAC
* * * *
8272349 AAGGAAAGTTCATTTATAGTCACTCATGCCTGT-AAAAACCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGCCTT
* * *
8272391 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * * *
8272456 GGTTAAAATAGATAATAATTGAATGTTTGCCTTGGGAAACGTGTCA-CGAAAGCCATCCATTGAC
66 GG-TAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTG-AAGCGAAAACCATCCGTTGAC
* * *
8272520 AAGAAAAGTCC-TTTTTAGTCGCTCATGCCTTCGGAAGCCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* ** * **
8272561 ATTCCTTACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTGAAATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
* * * * * ** * *
8272626 GATCAAACAGATGATAATTGAATGTTTACCTCGGGAAACGT-ATAGCTTAAACTC-TCTGTTGGT
66 GGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGA-AGCGAAAAC-CATCCGTT-GA
* * * * *
8272689 CGA-AAAAGTCCATTTATTGTCATTCATGTCTTCAAAAGCCTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
* * *
8272731 ATTACTCCCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTGGAATTATTTTACTTTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC--TTTT
* * * * * * * * **
8272796 TTGTTAAAACAGATTATTATTGAATGTTTATCTCGAGAACCGTGAGGCTAAAACCCTCAATTGAC
64 TTGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGAC
* * * *
8272861 AAGAAAAGACCGTTTATAGTCACTCATTCCTT-TAGAAGCCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTT
* * * *
8272903 ATTACTCGCTTAAAATGG--TTATAATCTCATAATTGATTTGAAGTTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
** ** * * * ** * * **
8272966 GGTTATGA-ATTTTATAATT-ATGTGTTTGCATCAAGAAACGTGAAGCGAAAGCCATTCGTTGGT
66 GG-TAAAACAGATTATAATTGA-ATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGAC
* *
8273029 TAGAAAAGTCCGTTTATAGTCACTCATGCCTTC-AGAAGCCTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTT
* * * * *
8273071 ATTGCTCGCTTTAAAAGGTTTGATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-TTTTT
* * * * * * * * * * * *
8273136 AGTTAAAAAATATTATAAATGAATGTTTGCCTCGGGAAACATGAAGCGAAAGCCATCCATTGATA
65 TGGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACA
8273201 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
8273242 ATTACTCGCTTTAAATGGTTTTATAATCT
1 ATTACTCGCTTTAAATGGTTTTATAATCT
8273271 NNNNNNNNNN
Statistics
Matches: 4545, Mismatches: 935, Indels: 453
0.77 0.16 0.08
Matches are distributed among these distances:
162 79 0.02
163 17 0.00
164 38 0.01
165 3 0.00
167 51 0.01
168 224 0.05
169 150 0.03
170 843 0.19
171 2083 0.46
172 667 0.15
173 139 0.03
174 13 0.00
175 3 0.00
176 4 0.00
177 4 0.00
178 1 0.00
180 1 0.00
181 11 0.00
182 21 0.00
183 13 0.00
184 5 0.00
185 11 0.00
186 4 0.00
187 3 0.00
188 3 0.00
189 1 0.00
190 17 0.00
191 11 0.00
192 13 0.00
193 10 0.00
194 5 0.00
195 11 0.00
196 6 0.00
197 5 0.00
198 10 0.00
199 8 0.00
200 4 0.00
201 13 0.00
202 10 0.00
203 19 0.00
204 2 0.00
205 4 0.00
206 5 0.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (170 bp):
ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTTTT
GGTAAAACAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCGAAAACCATCCGTTGACAA
GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT
Found at i:8268404 original size:342 final size:342
Alignment explanation
Indices: 8267393--8273270 Score: 5205
Period size: 342 Copynumber: 17.1 Consensus size: 342
8267383 GGGTCGTGAC
* * * * * *
8267393 ATTACTCGCTTGAAATGGTTTTGTAATATGATTATTGATTTTAAGCTGATTTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA-ATTTTTTTACATTTT
* * * ** * *
8267458 TGGTTAAAATAGATTATAATTGAATGATTGCCTTGGGAAACGTGATGCGAAAGCCTTCCATTGAC
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCATTCCATTGAC
* *
8267523 AAGAAAAGTCCATTTATAGACACTTATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * * *
8267588 TAATCTCATTATTGATTTTAAGTTGAATTTTCTTAACTTTTTTGG-TCAAACAGATTATAATTGA
195 TAATCTCATTATTGATTTTAAGCTGAATTTT-TTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * * * * * ** * *
8267652 ATGCTTGCCTTGAGAAACGT-ATAGCTAAAACC-CTCTGTTGGTAGGAAAAGTCCATTTATTGTC
259 ATGTTTACCTTGGGAAACGTGA-AGCGAAAGCCATTC-ATTGACAAGAAAAGTCCATTTATAGTC
* ** * *
8267715 ACTCATGACGACAAAAGCCAT
322 ACTCATGCCTTCAGAAGCCTT
* *
8267736 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTGTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTT
* * * * * * *
8267801 TTGTTAAAACAGATTATACA-TGAATCTTTACCTCAAGAAACGTGAGGCTAAAACCCTT--AGTT
65 TGGTTAAAACAGATTATA-ATTGAATGTTTACCTCAGGAAACGTGAAGC-GAAAGCATTCCA-TT
* * * * * *
8267863 GACAGGAAAAGACCATTTATAGTCACTCATACCTT-TAGAAGCCTTATTACTTGCTTAAAATGGT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATGGT
* * * * **
8267927 TTTATAATCTCATAATTGATTTTGAGCTGAATTTTTTTACATTTTTAGTTAAGA-ATTTTATAAT
191 TTTATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAAT
* * * * * * * ***
8267991 TAAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCATCCGTTGATAAGAAAACTTTGTTTATAGT
256 TGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGT
8268056 CACTCATGCCTTCAGAAGCCTT
321 CACTCATGCCTTCAGAAGCCTT
* * * * *
8268078 ATTGCTTGC-TTAATATGGTTTTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACTTTTT
1 ATTACTCGCTTTAA-ATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * * * ** *
8268142 TGGTTAAAACATATTTTAAATAAATGTTTGCTTTGGGGAAA-GTGAAGCGAAAGCATTCCATTAA
65 TGGTTAAAACAGATTATAATTGAATGTTTAC-CTCAGGAAACGTGAAGCGAAAGCATTCCATTGA
* *
8268206 CAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTT
* *
8268271 ATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACTTTTTTGGTTAAAACAGATTATAATTGA
194 ATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * * *
8268336 ATGATTACCTTGGGAAACGTGACGCGAAACCCTTTCATTGACAAGAAAAGTCCATTTATAGACAC
259 ATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCAC
8268401 TCATGCCTTC-GAAAGCCTT
324 TCATGCCTTCAG-AAGCCTT
* * *
8268420 ATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACCTTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA-CATTTT
* * * * * ** **
8268485 TGG-TCAAACAGATTATAATTAAATGTTTACCTC-GAGAAACGT-ATGGCTAAAACCCTCGGTTG
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAG-GAAACGTGA-AGCGAAAGCATTCCATTG
** * * ** * * *
8268547 GTAGGAAAAGTCCATTTATTGTCACTCATGCCCACAAAAGCCATATTACTCTCTTTAAATGGTTT
128 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTT
* * *
8268612 TATAATCTCATTATTGATTTTAAGTTGAATTGTTTTACATTTTTTTTGTTAAAACA-ATTTATAC
193 TATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACA--TTTTTGGTTAAAACAGA-TTATA-
* * * * * * * * *
8268676 A-TGAATCTTTACCTCGGGAAACGTGAGGCTAAAACC-CTCAGTTGA-TAGAAAAAGACCATTTG
254 ATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCA-TTGACAAG-AAAAGTCCATTTA
* * * *
8268738 TAGTCACTCATACCTTTAGAAACCCT
317 TAGTCACTCATGCCTTCAGAAGCCTT
* * * * *
8268764 ATTACTTGCTTAAAATGGTTTTATAATCTCATAATTGATTTTGAGCTGAATTGTTTTT-CATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTTTACATTTT
* * ** * * * *
8268828 TAGTTAAGA-ATTTTATAATTAAATGTTTACCTC-GAGAAACGCGAAGCAAAAGCCA-TCCGTTG
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAG-GAAACGTGAAGCGAAAG-CATTCCATTG
** * * * *
8268890 ACAAGAAAAGTCTGTTTATAGTCACTCATGTCTTCAAAAGCCTTATTGCTTGC-TTAATATGGTT
128 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA-ATGGTT
* * * * *
8268954 TTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAACAGATTTTAAAT
192 TTATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATT
* * * * * *
8269019 AAATGTTTGCTTTGGGAAAAGTGAAGCGAAAG-CATTCCATTAACAAGAAAAGTTCATTTATAGT
257 GAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATT-CATTGACAAGAAAAGTCCATTTATAGT
*
8269083 CACTCATGCCTT-TGAAAGCCTT
321 CACTCATGCCTTCAG-AAGCCTT
* * * * *
8269105 ATTACTCGTTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTAAATTTTTTTATATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * *
8269170 GGTTAAAACAGATTATAATTAAATGTTTGCATC-GGAAAACGTGACGCGAAAGC-TATCCATTGA
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCAGG-AAACGTGAAGCGAAAGCAT-TCCATTGA
* * * *
8269233 TAAGAAAAGTCCTTTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTT
* * * ** **
8269298 ATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTTGG-GCAAACAGATGGTAATTGA
194 ATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * * * * * * *
8269362 ATGTTTACCTTAGGAAACGTGTAGCTAAAACC-CTCTGTTGGA-AGGAAAAGTTCATTTATTGTC
259 ATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTC-ATT-GACAAGAAAAGTCCATTTATAGTC
* * *
8269425 ACTTATGCCTTCAAAAGCCCT
322 ACTCATGCCTTCAGAAGCCTT
* * * *
8269446 ATTATTCGCTTTAAATGGTTTTATAATCTCATTATTGATGTTAAGTTGAATTGTTTTAGATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTT
* * * * *
8269511 TTGTTAAAACAGATTATTATTGAATGTTTATCTCAGGAAACGTG-AGGGTAAAAGCCTT--AGTT
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCG--AAAGCATTCCA-TT
* * * * ** *
8269573 GATAGGAAAAGACCATTTATAGTCACTCATTCCTTTAAAAGCCTTATTACTCGCTTAAAATGG--
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * * ** ** * *
8269636 TTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTTGGTTATGA-ATTTTAGAAAT
192 TTATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATT
* * * * * * * * *
8269700 -ATATGTTTGCCTTGAGAAACATGAAGCGAAAGGCATCCGTTGACAAGAAAAGTTCGTTTACAGT
257 GA-ATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGT
* *
8269764 CACTCATGCCTTCAAAAGCTTT
321 CACTCATGCCTTCAGAAGCCTT
* * * *
8269786 ATTGCTCACTTTAAATGGTTTTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * *
8269851 TGTTAAAACTGATTATAAATGAATGTTTGCCTCAGGAAATGTCAAGCGAAACGCA-TCCATTGAC
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAA-GCATTCCATTGAC
*
8269915 AAGAAAAGTTCATTTATAGTCACTCATGCC-TCTGAAAGCCTTATTACTCGCTTTAAATGGTTTT
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTCGCTTTAAATGGTTTT
* ** *
8269979 ATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGCCAAAACAGATTATAAATGA
194 ATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * * * *
8270044 ATGTTTGCTTTAGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGTCAC
259 ATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCAC
* *
8270109 TCATGCCTT-TGAAAGACTT
324 TCATGCCTTCAG-AAGCCTT
* *
8270128 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * ** * * *
8270193 AGTTAAAACATATTATAATTGAATGTTTACCTTGGGAAACATGATGCGAAAGCCATT-TATTGAC
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAG-CATTCCATTGAC
* *
8270257 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTTATTACTCGCTTTAAATAGTTTTA
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* **
8270322 TAATTTGGTTATTGATTTTAAGCTGAATTTTTTTTACATTTTT-GTTAAAACAGATTATAATTGA
195 TAATCTCATTATTGATTTTAAGCTGAA-TTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * *
8270386 ATGTTTACCTCGGGAAACATGACGCGAAAGCCATTCATTGATAAGAAAAGTCCATTTATAGTCAC
259 ATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCAC
* *
8270451 TCATACCGTC-GAAAGCCATT
324 TCATGCCTTCAG-AAGCC-TT
** * * * * * * ** *
8270471 CATTGACAAG----AAAAGTTCATTTATAGTCAC-TCA-TGCCTTCGAAAGCCTT-ATTTCTTGC
1 -ATT-ACTCGCTTTAAATGGT--TTTATAATCTCATTATTG-ATT-TTAAG--TTGAATT-TT--
* * ** * * * * * *
8270529 TTTAAATGATTTTGTAATCTGATTACTGATTTTAAGCTGAATTTTTTTACATTTTTAGTGAAAAC
55 TTTACAT--TTTTG--GT-T-AAAACAGATTATAA-TTGAA--TGTTTAC---CTCAG-G-AAAC
* * ** * **
8270594 AAATTATAATTGAATGTTTACCTTGGGAAATGTGACGCGAAAGCCATTCATTGACAAGGAAAAGT
106 ---------GTGAA-G-----C----GAAA-G-CATTCCATTG----------ACAA-GAAAAGT
* * * * *
8270659 CCATTTATAGTCACTCATGCCTTGGAAAGACTTATTACTCGATTTAAATGGTTTTATAATATGAT
139 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCAT
* * * *
8270724 TATTGATTTTAAGCTAAATATTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCT
204 TATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT
* * * * * * * * * *
8270789 TAGGAAACGTGATGCGAAAGGCATCCATTGATAATAAAATTCCCTTTATAATCGCTCATGCCTTC
269 TGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
8270854 -GAAAGCCTT
334 AG-AAGCCTT
** * * *
8270863 ATTACTCATTTTAAATGGTTTTATAGTCTCATTATTGATTTTTAAGTTGAATTTTCTTAAATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGA-TTTTAAGTTGAATTTTTTTACATTTT
* * * * *
8270928 TGGTT-AAACATATTATAATTGAATGTTTACCTCAGGAAACGTGAGGCTAAA--A-CCCTTTGTT
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCATTCCATTG--
* * * * *
8270989 AGTAGGAAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATGGTT
128 A-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* ** * *
8271054 TTATAGTCTCATTATTGATTTTAAATTAAATTTTTTTACATTTTTGGTTAAAACAGATTAAAATT
192 TTATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATT
* * ** * * * ** * *
8271119 GAAAGTTTGCCTCAGGAAATGTGAAGTGAAAGCC-TTCCAATGGGAAGGAAAGTACATTTATAGT
257 GAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATT-CATTGACAAGAAAAGTCCATTTATAGT
* *
8271183 CACTCATGCCTTTAAAAGCCTT
321 CACTCATGCCTTCAGAAGCCTT
* * * *
8271205 ATTACTCGCTTTAAATGGATTTATAATCTTATTATTAATTTTAAGCTG-ATTTGTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTT-TTTTACATTTT
* * * * *
8271269 TGGTTAAAATAGATTGTAATTGAATGTTTACCTCAGGAAACGCGACGCGAAAGCCA-TCCATTAA
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAG-CATTCCATTGA
* * **
8271333 CAAGAAAAGTTCTTTTATAGTGGCTCATGCCTT-GAAAAGCCTTATTACTCGCTTTAAATGGTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG-AAAGCCTTATTACTCGCTTTAAATGGTTT
* * * *
8271397 TATAAACTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTTCGTTAAAACATATTATAATTG
193 TATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* *
8271462 AATGTTTACCTTGGGAAACATGACGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCA
258 AATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCA
* * *
8271527 CTCACGCCTTTAAAAGCCTT
323 CTCATGCCTTCAGAAGCCTT
* *
8271547 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTTACATTTT
* * * *
8271612 TGGTTAAAACAGATTATAATTGAATGTTTGCATTAGGAAACGTGACGCGAAAGCCA-TCCATTGA
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAG-CATTCCATTGA
* * * *
8271676 CAGGAAAAGTCCTTTTATAGTCGCTCATGCCTTCGAAAGCC---TTA-----TTTAAATGTTTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTT
* * * * *
8271733 ATAGTCTCATTATTGATTTTAAGCTGAATTTTCTTAAATTATTGG-TCAAACAGATTATAATTGA
194 ATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * * ** * * *
8271797 ATGTTTACCTTGGGAAACGTGTAGCTAAAACCCTCTGTTTG-TAGGAAAAGTCCATTTATTGTCA
259 ATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT-TCATTGACAAGAAAAGTCCATTTATAGTCA
* *
8271861 CTCATACCTTCAAAAGCCTT
323 CTCATGCCTTCAGAAGCCTT
* *
8271881 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGATGAATTGTTTTACATGTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACAT-TTT
* * * * * * * ** *
8271946 TTGTTAAAACAGATTATTATTGAATTTTTATCTC-GAGAAACGTGAGGCTAAAACCCTCAATTGA
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCAG-GAAACGTGAAGCGAAAGCATTCCATTGA
* * * * ** * *
8272010 CAGGAAAAGACCATTTATAGTCACTCATTCCTT-TAGAAGCCTTATTGGTCGATTCAAATGG--T
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATGGTTT
* * * ** ** **
8272072 TATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTATTATGA-ATTTTATAATT-
193 TATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* * * * * **
8272135 ATATGTTTGA-GTAGAGAAACGTGAAGCGAAAGCCATTCGTTGACAA-AAAAATCTGTTTATAGT
258 A-ATGTTT-ACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGT
*
8272198 CACTCATGCCTTTAGAAGCCTT
321 CACTCATGCCTTCAGAAGCCTT
* * * *
8272220 ATTACTCGCTTTAAATAGTTTTACAGTCTCATTATTGATTTTAAATTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * **
8272285 GGTTAAAACAAATTATAATTGAAAGTTTACCTCAGGAAATGTGAAGCGAAAGCCTTCTAATGGGA
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCATTCCATTGACA
* * * *
8272350 AGGAAAGTTCATTTATAGTCACTCATGCCTGT-AAAAACCTTATTACTCGCTTTAAATGGTTTTA
131 AGAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * *
8272414 TAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAATAGATAATAATTGAA
195 TAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* * * * *
8272479 TGTTTGCCTTGGGAAACGTGTCA-CGAAAGCCATCCATTGACAAGAAAAGTCC-TTTTTAGTCGC
260 TGTTTACCTTGGGAAACGTG-AAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCAC
*
8272542 TCATGCCTTCGGAAGCCTT
324 TCATGCCTTCAGAAGCCTT
* ** * *
8272561 ATTCCTTACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTGAAATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * **
8272626 -GATCAAACAGATGATAATTGAATGTTTACCTCGGGAAACGT-ATAGCTTAAA-C-TCTCTGTTG
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGA-AGC-GAAAGCAT-TCCATT-
* * * * * * *
8272687 GTCGA-AAAAGTCCATTTATTGTCATTCATGTCTTCAAAAGCCTTATTACTCCCTTTAAATGGTT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
* * * *
8272751 TTATAATCTCATTATTGATTTTAAG-TGGAATTATTTTACTTTTTTTTGTTAAAACAGATTATTA
192 TTATAATCTCATTATTGATTTTAAGCT-GAATTTTTTTAC-ATTTTTGGTTAAAACAGATTATAA
* * * * * * * * * *
8272815 TTGAATGTTTATCTCGAGAACCGTGAGGCTAAAACC-CTCAATTGACAAGAAAAGACCGTTTATA
255 TTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTC-ATTGACAAGAAAAGTCCATTTATA
* *
8272879 GTCACTCATTCCTTTAGAAGCCTT
319 GTCACTCATGCCTTCAGAAGCCTT
* * *
8272903 ATTACTCGCTTAAAATGG--TTATAATCTCATAATTGATTTGAAGTTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
** ** * * * * * *
8272966 GGTTATGA-ATTTTATAATT-ATGTGTTTGCATCAAGAAACGTGAAGCGAAAGCCATT-CGTTGG
66 GGTTAAAACAGATTATAATTGA-ATGTTTACCTCAGGAAACGTGAAGCGAAAG-CATTCCATTGA
** * * *
8273028 TTAGAAAAGTCCGTTTATAGTCACTCATGCCTTC-AGAAGCCTTATTGCTCGCTTTAAAAGGTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATGGTTT
* * * * * * * *
8273092 GATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTAGTTAAAAAATATTATAAATG
193 TATAATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* * * * *
8273157 AATGTTTGCCTCGGGAAACATGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCA
258 AATGTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCA
8273222 CTCATGCCTTC-GAAAGCCTT
323 CTCATGCCTTCAG-AAGCCTT
8273242 ATTACTCGCTTTAAATGGTTTTATAATCT
1 ATTACTCGCTTTAAATGGTTTTATAATCT
8273271 NNNNNNNNNN
Statistics
Matches: 4492, Mismatches: 840, Indels: 408
0.78 0.15 0.07
Matches are distributed among these distances:
333 13 0.00
334 215 0.05
335 54 0.01
337 2 0.00
338 103 0.02
339 311 0.07
340 590 0.13
341 700 0.16
342 1525 0.34
343 480 0.11
344 152 0.03
345 17 0.00
347 6 0.00
349 4 0.00
350 2 0.00
351 2 0.00
352 1 0.00
353 9 0.00
354 4 0.00
355 3 0.00
356 6 0.00
359 4 0.00
360 1 0.00
361 4 0.00
364 1 0.00
365 3 0.00
370 3 0.00
371 1 0.00
374 4 0.00
375 1 0.00
376 4 0.00
379 6 0.00
380 4 0.00
381 6 0.00
382 10 0.00
384 1 0.00
385 1 0.00
387 5 0.00
389 6 0.00
390 2 0.00
391 7 0.00
392 33 0.01
393 177 0.04
394 9 0.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (342 bp):
ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
GGTTAAAACAGATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCATTCCATTGACA
AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
AATCTCATTATTGATTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
GTTTACCTTGGGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTC
ATGCCTTCAGAAGCCTT
Found at i:8268503 original size:513 final size:512
Alignment explanation
Indices: 8267393--8273270 Score: 5096
Period size: 513 Copynumber: 11.4 Consensus size: 512
8267383 GGGTCGTGAC
* * * * * *
8267393 ATTACTCGCTTGAAATGGTTTTGTAATATGATTATTGATTTTAAGCTGATTTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA-ATTTTTTTACATTTT
* * * * * * *
8267458 TGGTTAAAATAGATTATAATTGAATGATTGCCTTGGGAAACGTGATGCGAAAGCCTTCCATTGAC
65 TGG-TAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGAAGCGAAAGCCATCCATTGAC
* *
8267523 AAGAAAAGTCCATTTATAGACACTTATGCCTTC-GAAAGCCTTATTACTCGCTTTAAATGGTTTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTTT
* * *
8267587 ATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAACTTTTTTGG-TCAAACAGATTATAATTG
193 ATAATCTCATTATTGATTTTAAGTTGAATTTT-TTTACATTTTTGGTTAAAACAGATTATAATTG
* * * * * * ** ** * *
8267651 AATGCTTGCCTTGAGAAACGT-ATAGCTAAAACCCTCTGTTGGTAGGAAAAGTCCATTTATTGTC
257 AATGTTTACCTTGGGAAACGTGA-AGCGAAAGCACTCCATTGACAAGAAAAGTCCATTTATAGTC
* ** * * *
8267715 ACTCATGACGACAAAAGCCATATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAA
321 ACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAA
* * * * **
8267780 GTTGAATTGTTTTACATTTTTTTGTTAAAACAGATTATACA-TGAATCTTTACCTCAAGAAACGT
386 GCTGAATTTTTTTACA-TTTTTGGTTAAAACAGATTATA-ATTGAATGTTTACCTCGGGAAACGT
* * * * * * *
8267844 GAGGCTAAAACCC-TT-AGTTGACAGGAAAAGACCATTTATAGTCACTCATACCTTTAGAAGCCT
449 GACGC-GAAACCCATTCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCT
8267907 T
512 T
* * * * *
8267908 ATTACTTGCTTAAAATGGTTTTATAATCTCATAATTGATTTTGAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * ** * * *
8267973 AGTTAAGA-ATTTTATAATTAAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCATCCGTTGATA
66 -GGTAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGAAGCGAAAGCCATCCATTGACA
* *** * *
8268037 AGAAAACTTTGTTTATAGTCACTCATGCCTTCAGAAGCCTTATTGCTTGC-TTAATATGGTTTTA
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAA-ATGGTTTTA
* * * * * * *
8268101 TAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACTTTTTTGGTTAAAACATATTTTAAATAAA
194 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* * * * *
8268166 TGTTTGCTTTGGGGAAA-GTGAAGCGAAAGCATTCCATTAACAAGAAAAGTTCATTTATAGTCAC
259 TGTTTACCTT-GGGAAACGTGAAGCGAAAGCACTCCATTGACAAGAAAAGTCCATTTATAGTCAC
* *
8268230 TCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGC
323 TCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGC
* * *
8268295 TGAATTTTTTTACTTTTTTGGTTAAAACAGATTATAATTGAATGATTACCTTGGGAAACGTGACG
388 TGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTGACG
* * *
8268360 CGAAACCCTTTCATTGACAAGAAAAGTCCATTTATAGACACTCATGCCTTCGAAAGCCTT
453 CGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * *
8268420 ATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACCTTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA-CATTTT
* * * * * * * ** **
8268485 TGGTCAAACAGATTATAATTAAATGTTTACCTCGAGAAACGT-ATGGCTAAAACCCTCGGTTGGT
65 TGGTAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGA-AGCGAAAGCCATCCATTGAC
* * ** * * *
8268549 AGGAAAAGTCCATTTATTGTCACTCATGCCCACAAAAGCCATATTACTCTCTTTAAATGGTTTTA
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTA
* *
8268614 TAATCTCATTATTGATTTTAAGTTGAATTGTTTTACATTTTTTTTGTTAAAACA-ATTTATACA-
194 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA--TTTTTGGTTAAAACAGA-TTATA-AT
* * * * * * * * *
8268677 TGAATCTTTACCTCGGGAAACGTGAGGCTAAAACCCT-CAGTTGA-TAGAAAAAGACCATTTGTA
255 TGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCACTCCA-TTGACAAG-AAAAGTCCATTTATA
* * * * * *
8268740 GTCACTCATACCTTTAGAAA-CCCTATTACTTGCTTAAAATGGTTTTATAATCTCATAATTGATT
318 GTCACTCATGCC-TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATT
* * * ** * *
8268804 TTGAGCTGAATTGTTTTT-CATTTTTAGTTAAGA-ATTTTATAATTAAATGTTTACCTCGAGAAA
382 TTAAGCTGAATT-TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAA
* * * * * * ** *
8268867 CGCGAAGCAAAAGCCATCCGTTGACAAGAAAAGTCTGTTTATAGTCACTCATGTCTTCAAAAGCC
446 CGTGACGCGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCC
8268932 TT
511 TT
* * * *
8268934 ATTGCTTGC-TTAATATGGTTTTATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTT
1 ATTACTCGCTTTAA-ATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * * * *
8268998 TGGTTAAAACAGATTTTAAATAAATGTTTGCTTTGGGAAAAGTGAAGCGAAAG-CATTCCATTAA
65 TGG-TAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGAAGCGAAAGCCA-TCCATTGA
* * *
8269062 CAAGAAAAGTTCATTTATAGTCACTCATGCCTT-TGAAAGCCTTATTACTCGTTTTAAATGGTTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTT
* * * * *
8269126 TATAATCTGATTATTGATTTTAAGCTAAATTTTTTTATATTTTTGGTTAAAACAGATTATAATTA
192 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* * * * * * *
8269191 AATGTTTGCATCGGAAAACGTGACGCGAAAGCTA-TCCATTGATAAGAAAAGTCCTTTTATAGTC
257 AATGTTTACCTTGGGAAACGTGAAGCGAAAGC-ACTCCATTGACAAGAAAAGTCCATTTATAGTC
* *
8269255 ACTCATACCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAA
321 ACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAA
* * * ** ** **
8269320 GTTGAATTTTCTTAAATTTTTGG-GCAAACAGATGGTAATTGAATGTTTACCTTAGGAAACGTGT
386 GCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTG-
* * * * * * *
8269384 A-GCTAAAACCC--TCTGTTGGA-AGGAAAAGTTCATTTATTGTCACTTATGCCTTCAAAAGCCC
450 ACGC-GAAACCCATTC-ATT-GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCT
8269445 T
512 T
* * * *
8269446 ATTATTCGCTTTAAATGGTTTTATAATCTCATTATTGATGTTAAGTTGAATTGTTTTAGATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA--TTT
* * * * * *
8269511 TTGTTAAAACAGATTATTATTGAATGTTTATCTCA-GGAAACGTG-AGGGTAAAAGCC-T-TAGT
64 TTGGTAAAACAGATTATAATTAAATGTTTACCT-AGGGAAACGTGAAGCG--AAAGCCATCCA-T
* * * * * * *
8269572 TGATAGGAAAAGACCATTTATAGTCACTCATTCCTTTAAAAGCCTTATTACTCGCTTAAAATGG-
125 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGT
* * ** ** * *
8269636 -TTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTTGGTTATGA-ATTTTAGAAA
190 TTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAAT
* * * * * * *
8269699 T-ATATGTTTGCCTTGAGAAACATGAAGCGAAAGGCA-TCCGTTGACAAGAAAAGTTCGTTTACA
255 TGA-ATGTTTACCTTGGGAAACGTGAAGCGAAA-GCACTCCATTGACAAGAAAAGTCCATTTATA
* * * * *
8269762 GTCACTCATGCCTTCAAAAGCTTTATTGCTCACTTTAAATGGTTTTATAGTCTCATTATTGATTT
318 GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTT
* * * * * * * *
8269827 TAAGTTGAATTTTCTTACATTTTTTGTTAAAACTGATTATAAATGAATGTTTGCCTCAGGAAATG
383 TAAGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACG
* * * * * *
8269892 TCAAGCGAAACGCATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCC-TCTGAAAGCCT
448 TGACGCGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAAAGCCT
8269956 T
512 T
* *
8269957 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * *
8270022 GGCCAAAACAGATTATAAATGAATGTTTGCTTTA-GGAAAAGTGAAGCGAAAGCCATCCATTGAC
66 GG-TAAAACAGATTATAATTAAATGTTTAC-CTAGGGAAACGTGAAGCGAAAGCCATCCATTGAC
* * *
8270086 AAGAAAAGTTCATTTATAGTCACTCATGCCTT-TGAAAGACTTATTACTCGCTTTAAATGGTTTT
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTTT
* * * *
8270150 ATAATCTGATTATTGATTTTAAGCTGAATTTTTTTACATTTTTAGTTAAAACATATTATAATTGA
193 ATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * **
8270215 ATGTTTACCTTGGGAAACATGATGCGAAAGC-CATTTATTGACAAGAAAAGTCCATTTATAGTCA
258 ATGTTTACCTTGGGAAACGTGAAGCGAAAGCAC-TCCATTGACAAGAAAAGTCCATTTATAGTCA
* * * **
8270279 CTCATGCCTTCGAAAGACTTATTACTCGCTTTAAATAGTTTTATAATTTGGTTATTGATTTTAAG
322 CTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
*
8270344 CTGAATTTTTTTTACATTTTT-GTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACATGA
387 CTGAA-TTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTGA
* * * * *
8270408 CGCGAAAGCCATTCATTGATAAGAAAAGTCCATTTATAGTCACTCATACCGTCGAAAGCCATT
451 CGCGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCC-TT
** * * * * * * ** *
8270471 CATTGACAAG----AAAAGTTCATTTATAGTCAC-TCA-TGCCTTCGAAAGCCTT-ATTTCTTGC
1 -ATT-ACTCGCTTTAAATGGT--TTTATAATCTCATTATTG-ATT-TTAAG--TTGAATT-TT--
* * * * * * * *
8270529 TTTAAATGATTTT-GTAATCTGATTACTGATTTTAAGCTGAATTTTTTTACATTTTTAGTGAAAA
55 TTTACAT--TTTTGGTAA----A--ACAGATTATAA--TTAA-ATGTTTAC----CTAG-GGAAA
* * ** * * ** * *
8270593 CAAATTATAATTGAATGTTTACCTTGGGAAATGTGACGCGAAAGCCATTCATTGACAAGGAAAAG
104 C---GT-GAAGCGAAAG----CCAT---CCAT-TGA--C--AAG-AAA---------------AG
* * * * *
8270658 TCCATTTATAGTCACTCATGCCTT-GGAAAGACTTATTACTCGATTTAAATGGTTTTATAATATG
137 TCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * *
8270722 ATTATTGATTTTAAGCTAAATATTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGC
201 ATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * * * *
8270787 CTTAGGAAACGTGATGCGAAAGGCA-TCCATTGATAATAAAATTCCCTTTATAATCGCTCATGCC
266 CTTGGGAAACGTGAAGCGAAA-GCACTCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
** * *
8270851 TTCGAAAGCCTTATTACTCATTTTAAATGGTTTTATAGTCTCATTATTGATTTTTAAGTTGAATT
330 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGA-TTTTAAGCTGAATT
* * * * * *
8270916 TTCTTAAATTTTTGGTT-AAACATATTATAATTGAATGTTTACCTCAGGAAACGTGAGGCTAAAA
394 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTGACGC-GAAA
** * * *
8270980 CCC-TTTGTT-AGTAGGAAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTT
458 CCCATTCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * *
8271034 ATTACTCACTTTAAATGGTTTTATAGTCTCATTATTGATTTTAAATTAAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * *
8271099 GGTTAAAACAGATTAAAATTGAAA-GTTTGCCTCA-GGAAATGTGAAGTGAAAGCCTTCCAATGG
66 GG-TAAAACAGATTATAATT-AAATGTTTACCT-AGGGAAACGTGAAGCGAAAGCCATCCATTGA
* * * * * *
8271162 GAAGGAAAGTACATTTATAGTCACTCATGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGATTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTT
* * * * *
8271227 ATAATCTTATTATTAATTTTAAGCTG-ATTTGTTTTACATTTTTGGTTAAAATAGATTGTAATTG
193 ATAATCTCATTATTGATTTTAAGTTGAATTT-TTTTACATTTTTGGTTAAAACAGATTATAATTG
** * * * * * *
8271291 AATGTTTACCTCAGGAAACGCGACGCGAAAGC-CATCCATTAACAAGAAAAGTTCTTTTATAGTG
257 AATGTTTACCTTGGGAAACGTGAAGCGAAAGCAC-TCCATTGACAAGAAAAGTCCATTTATAGTC
* * *
8271355 GCTCATGCCTT-GAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAAACTGATTATTGATTTTA
321 ACTCATGCCTTCG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTA
* * * *
8271419 AGCTGAATTTTTTTACATTTTTCGTTAAAACATATTATAATTGAATGTTTACCTTGGGAAACATG
385 AGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTG
* * *
8271484 ACGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCACGCCTTTAAAAGCCTT
450 ACGCGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* *
8271547 ATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTTACATTTT
* * * *
8271612 TGGTTAAAACAGATTATAATTGAATGTTTGCATTA-GGAAACGTGACGCGAAAGCCATCCATTGA
65 TGG-TAAAACAGATTATAATTAAATGTTTAC-CTAGGGAAACGTGAAGCGAAAGCCATCCATTGA
* * * *
8271676 CAGGAAAAGTCCTTTTATAGTCGCTCATGCCTTC-GAAAGCC---TTA-----TTTAAATGTTTT
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTT
* * * * * *
8271732 TATAGTCTCATTATTGATTTTAAGCTGAATTTTCTTAAATTATTGG-TCAAACAGATTATAATTG
192 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* * * * ** * * *
8271796 AATGTTTACCTTGGGAAACGTGTAGCTAAAACCCTCTGTTTG-TAGGAAAAGTCCATTTATTGTC
257 AATGTTTACCTTGGGAAACGTGAAGCGAAAGCACTC-CATTGACAAGAAAAGTCCATTTATAGTC
* *
8271860 ACTCATACCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAA
321 ACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAA
* * * * * * *
8271925 GATGAATTGTTTTACATGTTTTTGTTAAAACAGATTATTATTGAATTTTTATCTCGAGAAACGTG
386 GCTGAATTTTTTTACAT-TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTG
* * * * * * *
8271990 AGGCTAAAACCC--TCAATTGACAGGAAAAGACCATTTATAGTCACTCATTCCTTTAGAAGCCTT
450 ACGC-GAAACCCATTC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
** * * * *
8272053 ATTGGTCGATTCAAATGG--TTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTT
** ** ** * * * * *
8272116 TATTATGA-ATTTTATAATTATATGTTTGA-GTAGAGAAACGTGAAGCGAAAGCCATTCGTTGAC
65 TGGTAAAACAGATTATAATTAAATGTTT-ACCTAGGGAAACGTGAAGCGAAAGCCATCCATTGAC
* ** * *
8272179 AA-AAAAATCTGTTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATAGTTTTA
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * * *
8272243 CAGTCTCATTATTGATTTTAAATTGAATTTTTTTACATTTTTGGTTAAAACAAATTATAATTGAA
194 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* ** * * * ** * *
8272308 AGTTTACCTCAGGAAATGTGAAGCGAAAGC-CTTCTAATGGGAAGGAAAGTTCATTTATAGTCAC
259 TGTTTACCTTGGGAAACGTGAAGCGAAAGCAC-TCCATTGACAAGAAAAGTCCATTTATAGTCAC
* * *
8272372 TCATGCCTGT-AAAAACCTTATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAG
323 TCATGCCT-TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * * *
8272436 CTGAATTTTTTTACATTTTTGGTTAAAATAGATAATAATTGAATGTTTGCCTTGGGAAACGTGTC
387 CTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTGAC
* * * * * **
8272501 ACGAAAGCCATCCATTGACAAGAAAAGTCC-TTTTTAGTCGCTCATGCCTTCGGAAGCCTT
452 GCGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* ** * *
8272561 ATTCCTTACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTGAAATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * **
8272626 GATCAAACAGATGATAATTGAATGTTTACCTCGGGAAACGT-ATAGCTTAAA-CTC-TCTGTTGG
66 GGTAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGA-AGC-GAAAGC-CATCCATT-G
* * * * * * *
8272688 TCGA-AAAAGTCCATTTATTGTCATTCATGTCTTCAAAAGCCTTATTACTCCCTTTAAATGGTTT
127 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTT
* * * * *
8272752 TATAATCTCATTATTGATTTTAAGTGGAATTATTTTACTTTTTTTTGTTAAAACAGATTATTATT
192 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-ATTTTTGGTTAAAACAGATTATAATT
* * * * * * * * * * *
8272817 GAATGTTTATCTCGAGAACCGTGAGGCTAAAACCCTCAATTGACAAGAAAAGACCGTTTATAGTC
256 GAATGTTTACCTTGGGAAACGTGAAGCGAAAGCACTCCATTGACAAGAAAAGTCCATTTATAGTC
* * * * *
8272882 ACTCATTCCTT-TAGAAGCCTTATTACTCGCTTAAAATGG--TTATAATCTCATAATTGATTTGA
321 ACTCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTA
* ** ** * * * **
8272944 AGTTGAATTTTTTTACATTTTTGGTTATGA-ATTTTATAATT-ATGTGTTTGCATCAAGAAACGT
385 AGCTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA-ATGTTTACCTCGGGAAACGT
* * * *** * *
8273007 GAAGCGAAAGCCATTCGTTGGTTAGAAAAGTCCGTTTATAGTCACTCATGCCTTCAGAAGCCTT
449 GACGCGAAACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * *
8273071 ATTGCTCGCTTTAAAAGGTTTGATAGTCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * * * *
8273136 AGTTAAAAAATATTATAAATGAATGTTTGCCTCGGGAAACATGAAGCGAAAGCCATCCATTGATA
66 -GGTAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGAAGCGAAAGCCATCCATTGACA
8273201 AGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTCGCTTTAAATGGTTTTA
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTTTA
8273265 TAATCT
194 TAATCT
8273271 NNNNNNNNNN
Statistics
Matches: 4333, Mismatches: 827, Indels: 410
0.78 0.15 0.07
Matches are distributed among these distances:
501 32 0.01
502 43 0.01
503 13 0.00
504 34 0.01
505 134 0.03
506 147 0.03
507 9 0.00
508 43 0.01
509 177 0.04
510 573 0.13
511 394 0.09
512 596 0.14
513 1035 0.24
514 432 0.10
515 178 0.04
516 18 0.00
518 8 0.00
519 1 0.00
520 4 0.00
522 1 0.00
524 9 0.00
526 1 0.00
527 5 0.00
528 1 0.00
529 3 0.00
530 4 0.00
532 4 0.00
533 2 0.00
534 1 0.00
535 1 0.00
536 6 0.00
537 4 0.00
540 3 0.00
541 7 0.00
542 1 0.00
543 2 0.00
544 3 0.00
545 4 0.00
546 2 0.00
547 1 0.00
548 3 0.00
549 1 0.00
550 4 0.00
551 1 0.00
552 2 0.00
553 8 0.00
555 1 0.00
557 4 0.00
558 1 0.00
559 9 0.00
561 6 0.00
562 6 0.00
563 15 0.00
564 308 0.07
565 28 0.01
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (512 bp):
ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
GGTAAAACAGATTATAATTAAATGTTTACCTAGGGAAACGTGAAGCGAAAGCCATCCATTGACAA
GAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATA
ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
TTTACCTTGGGAAACGTGAAGCGAAAGCACTCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGCTGA
ATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGGGAAACGTGACGCGA
AACCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
Found at i:8270485 original size:50 final size:50
Alignment explanation
Indices: 8270410--8270517 Score: 180
Period size: 50 Copynumber: 2.2 Consensus size: 50
8270400 AAACATGACG
*
8270410 CGAAAGCCATTCATTGATAAGAAAAGTCCATTTATAGTCACTCATACCGT
1 CGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCGT
* * *
8270460 CGAAAGCCATTCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTT
1 CGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCGT
8270510 CGAAAGCC
1 CGAAAGCC
8270518 TTATTTCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (50 bp):
CGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCGT
Found at i:8270632 original size:221 final size:222
Alignment explanation
Indices: 8270239--8270676 Score: 702
Period size: 221 Copynumber: 2.0 Consensus size: 222
8270229 AAACATGATG
*
8270239 CGAAAGCCATTTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTTATTAC
1 CGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTTATTAC
* * * *
8270304 TCGCTTTAAATAGTTTTATAATTTGGTTATTGATTTTAAGCTGAATTTTTTTTACATTTTTGTTA
66 TCGCTTTAAATAGTTTTATAATCTGATTACTGATTTTAAGCTGAATTTTTTTTACATTTTTGTGA
* *
8270369 AAACAGATTATAATTGAATGTTTACCTCGGGAAACATGACGCGAAAGCCATTCATTGATAA-GAA
131 AAACAAATTATAATTGAATGTTTACCTCGGGAAACATGACGCGAAAGCCATTCATTGACAAGGAA
8270433 AAGTCCATTTATAGTCACTCATACCGT
196 AAGTCCATTTATAGTCACTCATACCGT
* * *
8270460 CGAAAGCCATTCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTTC
1 CGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTTATTAC
* *
8270525 TTGCTTTAAAT-GATTTTGTAATCTGATTACTGATTTTAAGCTGAA-TTTTTTTACATTTTTAGT
66 TCGCTTTAAATAG-TTTTATAATCTGATTACTGATTTTAAGCTGAATTTTTTTTACATTTTT-GT
* **
8270588 GAAAACAAATTATAATTGAATGTTTACCTTGGGAAATGTGACGCGAAAGCCATTCATTGACAAGG
129 GAAAACAAATTATAATTGAATGTTTACCTCGGGAAACATGACGCGAAAGCCATTCATTGACAAGG
8270653 AAAAGTCCATTTATAGTCACTCAT
194 AAAAGTCCATTTATAGTCACTCAT
8270677 GCCTTGGAAA
Statistics
Matches: 199, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
220 16 0.08
221 158 0.79
222 25 0.13
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (222 bp):
CGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTTATTAC
TCGCTTTAAATAGTTTTATAATCTGATTACTGATTTTAAGCTGAATTTTTTTTACATTTTTGTGA
AAACAAATTATAATTGAATGTTTACCTCGGGAAACATGACGCGAAAGCCATTCATTGACAAGGAA
AAGTCCATTTATAGTCACTCATACCGT
Found at i:8274286 original size:171 final size:171
Alignment explanation
Indices: 8273445--8274565 Score: 1343
Period size: 170 Copynumber: 6.6 Consensus size: 171
8273435 NNNNNNNNGA
* * *
8273445 AAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTT-TTA
1 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTA
* * * *
8273509 CATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTC-AGGAAACATGACGCGAACGCCATC
66 CATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGA-GAAACGTGACGCGAAAGCCATC
* *
8273573 CATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTTAA
130 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
* * * * * * * *
8273615 AAGCCTTATCACTCGCTTTAAAGGGTTTTATAATCTGATTGTTGATTTTAAGCTAAATTTTTTTC
1 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTA
* * *
8273680 CATTTTAGGTTAAAACAGA-T-TAATTGAATGTTTACCTCGAGAAACGTGACGTGAAAGTCATCC
66 CATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGACGCGAAAGCCATCC
* * * *
8273743 CTTAATAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCG
131 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
* *
8273783 AAAGCCTTATTACTCGCTTTAAATCGTTTTATAATCTCATTATCGATTTTAAGTTGAATTTTCTT
1 -AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTT
* * * * * * *
8273848 AAATTTTTGG-TCAAACAGATTATAATTGAATGTTTACCTCGAAAAACGTGAGGCTAAAACCCT-
65 ACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGACGCGAAAGCCATC
* * * ** *
8273911 CAGTTGACAGGAAAAGACCATTTATAGACACTCATAACTTTAC
130 CA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
* * * * * *
8273954 AAGACTTA-TAGCTCACTTAAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTT
1 AAGCCTTATTA-CTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTT
* ** * * * * *
8274018 ACATTTTTGGTTAAGA-ATTTTATAATTAAATTTTTGCCTCGAGAAATGTGAAGCGAAAGCCATC
65 ACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGACGCGAAAGCCATC
* *
8274082 CAGTGACAAGAAAAGTCCGTTTATAGTCACTCATGCCTTTAG
130 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
* *
8274124 AAGCCTTATTACTCGCTTTAAATGGTTTTATAGA-CTCATTATTGATTTTAAGTTGAATGTTCTC
1 AAGCCTTATTACTCGCTTTAAATGGTTTTATA-ATCTCATTATTGATTTTAAGTTGAATTTTCTT
* * * * * *
8274188 ACATTTTTGGTTAAAATAGATTATAATCGAATGCTTGCCTCTG-GAAACTTGTA-GCAAAAGCCA
65 ACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTC-GAGAAACGTG-ACGCGAAAGCCA
* ** *
8274251 TCCATTGACAACAAAAGTTTATTTATAGTCACTCATGCCTTCAG
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
* * * *
8274295 AAGCCTTATTACTCACTTGAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTCTTA
1 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTA
* **
8274360 CATTTTTGGTTAAAACATATTGGAATTGAATGTTTACCTCGAGAAACGTGACGCGAAAGCCATCC
66 CATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGACGCGAAAGCCATCC
* ** *
8274425 ATTGACAACAAAAGTTTATTTATAGTCACTCATGCC-TTCG
131 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
8274465 AAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTT
1 -AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTT
* * *
8274530 AAATTGTTGG-TCAAACAGATTATAATTGAATGTTTA
65 ACATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
8274566 TGTCATGAAC
Statistics
Matches: 803, Mismatches: 129, Indels: 38
0.83 0.13 0.04
Matches are distributed among these distances:
168 10 0.01
169 134 0.17
170 344 0.43
171 313 0.39
172 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (171 bp):
AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTA
CATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGACGCGAAAGCCATCC
ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAG
Found at i:8281466 original size:171 final size:170
Alignment explanation
Indices: 8281236--8283275 Score: 1737
Period size: 171 Copynumber: 12.1 Consensus size: 170
8281226 CTGTTGGTAG
*
8281236 GAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * *
8281301 GTCTCATTATTCATTTTAAATTGAATTTTTTTACAAGTTTGGTTAAAACATATTATAATTGAAAG
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGAATG
* * *
8281366 TTTGCCTCAGGAAACGTGAAGCGAAAGCCTTCCAATGGGAA
131 TTTGCCTC-GGAAACGTGAAGCGAAAGCCATCCATTGAGAA
* * *
8281407 GGAAAGTTCATTTATAGTCACTCATGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * * * * * * *
8281472 ATTTGATTATTCATTTTAAGCTAAATTGTTTTACATTTTTAGTTAAAATAGATTATAATTGAATG
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGAATG
* * * * * * * * *
8281537 TTTGTCACGGAAGACATGAGGCTAAAACCCT-CAGTTGATAG
131 TTTGCCTCGGAA-ACGTGAAGCGAAAGCCATCCA-TTGAGAA
* * * * * **
8281578 GAAAAGACCATTTACAGTCACTCATACCTTTAAAAGCCTT-GTAGCTCGCTGAAAATGGTTTTAT
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA-CTCGCTTTAAATGGTTTTAT
* * * * * ** *
8281642 AATCTCATAATTGATTTTAAGTTGAATTTCTTTAC-ATTTTCAGTGAAAA-ATTTTATAATTAAA
65 AGTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTT-GGTTAAAACAGATTATAATTGAA
* *
8281705 TGTTTGCCTCGAGAAACGTGGAA-TGAAAGCCATCCATTGACAA
129 TGTTTGCCTCG-GAAACGT-GAAGCGAAAGCCATCCATTGAGAA
* * * * * * *
8281748 GAAAAGTTCGTTTATAGTAAAC-AATGCCTTCAGAAGCCTTATTACTCGCTTTTAACGGTTTTAT
1 GAAAAGTCCATTTATAGT-CACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
* * * * * * * *
8281812 AGTCTCATTATTGATTTTAAGTTGAATTCTCTCACATTTTTGGCTAAAATAGATCATAATCGAAT
65 AGTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGAAT
* * * ** *
8281877 GTTTGCCTTTGGAAACTTGAAGCAAAAGTGATCCATTGAAAA
130 GTTTGCC-TCGGAAACGTGAAGCGAAAGCCATCCATTGAGAA
* ** * *
8281919 GAAAAGTCCTTTTATAGTTGCTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGCTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * *
8281984 GTCTCATTATTGATTTTATGTTGAATTTTCTTA-AATTTTTGG-TCAAACAGATTATAATTGAAT
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAA-TTTTGGTTAAAACAGATTATAATTGAAT
* * * * * ** *
8282047 GTTTACCTCGGGAAACGTGTAGCTAAAACCCTCTGTTG-GTAG
130 GTTTGCCTC-GGAAACGTGAAGCGAAAGCCATCCATTGAG-AA
* ** * *
8282089 GAAAAGTCCATCTATTTTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * ** *
8282154 ATCTCATTATTGATTTTAAGATGAATTGTTTTA-AATTTTTTATCTAAAACAGATTATTATTGAA
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAA-TTTTGGT-TAAAACAGATTATAATTGAA
** * ** * *
8282218 TGTTTATCTCAGGAAACGTGAGGTTAAAACC--CGCAGTTGA-CA
129 TGTTTGCCTC-GGAAACGTGAAGCGAAAGCCATC-CA-TTGAGAA
* ** * * *
8282260 GAAAAAGACCATTTATAGTCACTCATTTCTTTAGAAGCCTTATTACTCGCTTAAAATGG--TTAT
1 G-AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
* * * * * * ** **
8282323 AATCACATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTGATTATGA-ATTTTATAATT-ATA
65 AGTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGA-A
* * * *
8282386 TGTTTGCCTTGAGAAACGTGAAGCGAAGGCCATCCGTTGACAA
129 TGTTTGCCTCG-GAAACGTGAAGCGAAAGCCATCCATTGAGAA
** * *
8282429 GAAAAGTCTGTTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATG
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * * *
8282494 GTCTCATTGTTCATTTTAAATTGAATTTTTTTACATTTTTGGTTAAAATAGATTATAATT-ACAA
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGA-AT
* * * ** *
8282558 CTTTGCCTCGAGAAACGTGAAGCAAAAGCCTTCCAAGGGGAA
130 GTTTGCCTCG-GAAACGTGAAGCGAAAGCCATCCATTGAGAA
* * * *
8282600 GAAAAGTTCATTTATAGTTACTCATGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTAATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * *
8282665 ATCTGATTATTGATTTTAAGCTGAATTTTTTTA-TATATTT--TT--------TTA-AATCGAAT
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAAT-TTTGGTTAAAACAGATTATAATTGAAT
* * ** *
8282718 GTTTGCCTCAGGAAACTTGAAGCAAAAGTGATCCATTGACAA
130 GTTTGCCTC-GGAAACGTGAAGCGAAAGCCATCCATTGAGAA
* * * * *
8282760 GAAAAGTCCTTTTATAGTCGCTCATGCCTTCGAAA-CCTTATTACTTGCTTTAAAT-GATTT-TA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* *
8282822 GTCTCATTATTAATTTTAAGTTGAATTTTCTTA-AATTTTGGGTT-AAACAGATTATAATTGAAT
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTT-GGTTAAAACAGATTATAATTGAAT
* * ** *
8282885 GTTTACCTCGAGAAACGT-----G-TAG-C-TCTGTTG-GTAG
130 GTTTGCCTCG-GAAACGTGAAGCGAAAGCCATCCATTGAG-AA
** * * * *
8282919 GAAAAGTCCATTTATTTTCTCTCATGCCTTCAAAAGCCTT-GTAGCTCGCTTAAAATAGTTTTAT
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA-CTCGCTTTAAATGGTTTTAT
* * * * ** *
8282983 ATTCTCATAATTTATTTTAAGTTGAATTTTTTTTAC-ATTTTCGGTTAAGA-ATTTTATAATTAA
65 AGTCTCATTATTGATTTTAAGTTGAA-TTTTTTTACAATTTT-GGTTAAAACAGATTATAATTGA
* * * *
8283046 ATGTTTACCTCGAGAAACGTGAAGTGAACGCCATCCATTGAAAA
128 ATGTTTGCCTCG-GAAACGTGAAGCGAAAGCCATCCATTGAGAA
* *
8283090 GAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAACGGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * *
8283155 GTCTCATTATTGATTTTAAGTTGAATTTTTTCACATTTTTGGTT-AAACAGATTATAATCGAGTG
66 GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGAATG
* *
8283219 TTTGCCTCGGGAAACGTGAAGCGAAAGCCATCTATTGACAA
131 TTTGCCTC-GGAAACGTGAAGCGAAAGCCATCCATTGAGAA
*
8283260 GAAAAGTTCATTTATA
1 GAAAAGTCCATTTATA
8283276 ATNNNNNNNN
Statistics
Matches: 1483, Mismatches: 318, Indels: 137
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.00
157 32 0.02
158 3 0.00
159 59 0.04
160 78 0.05
161 11 0.01
162 24 0.02
163 46 0.03
164 2 0.00
166 4 0.00
167 23 0.02
168 85 0.06
169 12 0.01
170 421 0.28
171 583 0.39
172 97 0.07
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (170 bp):
GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATA
GTCTCATTATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAAACAGATTATAATTGAATG
TTTGCCTCGGAAACGTGAAGCGAAAGCCATCCATTGAGAA
Found at i:8281522 original size:377 final size:376
Alignment explanation
Indices: 8280812--8281539 Score: 955
Period size: 377 Copynumber: 1.9 Consensus size: 376
8280802 TGGTTAAAAA
* * * **
8280812 GATTATAATCGAATGTTTACCTCGGGAAACATGTAGGTTTGTTGGTAGGAAAAGTAAATTTATTT
1 GATTATAATCGAATGTTTACCTCGAGAAACATGTAGCTCTGTTGGTAGGAAAAGTAAATTTATAG
* *
8280877 TCTCTCATGCCTTCAAAAGCCTTATAACTCGCTTAAAATGGTTTTATAATCTCATAATTGATTTT
66 TCACTCATGCCTTCAAAAGCCTTATAACTCGCTTAAAATGGTTTTATAATCTCATAATTCATTTT
* * * * * *
8280942 AAGTTGAATTTTTTTAAATTTTCGGTTAAGAATTTTATAATTACATGTTTGCCTTGAAAAACGTG
131 AAATTGAATTTTTTTAAAGTTTCGGTTAAAAATATTATAATTACAAGTTTGCCTAGAAAAACGTG
* * * * *
8281007 AAGTGAAAGCCATCCATTGACAACAAAAGTCTGTTTATAGTCAGCCATGCCTTCAGAAGCTTTAT
196 AAGCGAAAGCCATCCAATGACAACAAAAGTCTATTTATAGTCAGCCATGCCTTCAAAAGCCTTAT
* * * * *
8281072 TACTTGCTTTAAACGGTTTTATAGTCTCATTATTAATTTTAAGTTGAATTTTCTCACATTTTTGG
261 TACTCGCTTTAAACGGTTTTATAATCTCATTATTAATTTTAAGCTAAATTTTCTCACATTTTTAG
8281137 TTAAAATAGATTATAATCGAATGTTTTCCTCGAGAAACTTGAAGCAAAAGT
326 TTAAAATAGATTATAATCGAATGTTTTCCTCGAGAAACTTGAAGCAAAAGT
* * **
8281188 GATTATAATTGAATGTTTACCTCGAGAAACGTGTAGCTCTGTTGGTAGGAAAAGTCTATTTATAG
1 GATTATAATCGAATGTTTACCTCGAGAAACATGTAGCTCTGTTGGTAGGAAAAGTAAATTTATAG
* * * *
8281253 TCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTCATTTT
66 TCACTCATGCCTTCAAAAGCCTTATAACTCGCTTAAAATGGTTTTATAATCTCATAATTCATTTT
*
8281318 AAATTGAATTTTTTTACAAGTTT-GGTTAAAACATATTATAATTGA-AAGTTTGCCTCAG-GAAA
131 AAATTGAATTTTTTTA-AAGTTTCGGTTAAAA-ATATTATAATT-ACAAGTTTGCCT-AGAAAAA
* ** ** *
8281380 CGTGAAGCGAAAGCCTTCCAATGGGAAGGAAAGT-TCATTTATAGTCA-CTCATGCCTTTAAAAG
192 CGTGAAGCGAAAGCCATCCAATGACAACAAAAGTCT-ATTTATAGTCAGC-CATGCCTTCAAAAG
* * * * *
8281443 CCTTATTACTCGCTTTAAATGGTTTTATAATTTGATTATTCATTTTAAGCTAAATTGTT-TTACA
255 CCTTATTACTCGCTTTAAACGGTTTTATAATCTCATTATTAATTTTAAGCTAAATT-TTCTCACA
*
8281507 TTTTTAGTTAAAATAGATTATAATTGAATGTTT
319 TTTTTAGTTAAAATAGATTATAATCGAATGTTT
8281540 GTCACGGAAG
Statistics
Matches: 301, Mismatches: 44, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
376 139 0.46
377 158 0.52
378 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (376 bp):
GATTATAATCGAATGTTTACCTCGAGAAACATGTAGCTCTGTTGGTAGGAAAAGTAAATTTATAG
TCACTCATGCCTTCAAAAGCCTTATAACTCGCTTAAAATGGTTTTATAATCTCATAATTCATTTT
AAATTGAATTTTTTTAAAGTTTCGGTTAAAAATATTATAATTACAAGTTTGCCTAGAAAAACGTG
AAGCGAAAGCCATCCAATGACAACAAAAGTCTATTTATAGTCAGCCATGCCTTCAAAAGCCTTAT
TACTCGCTTTAAACGGTTTTATAATCTCATTATTAATTTTAAGCTAAATTTTCTCACATTTTTAG
TTAAAATAGATTATAATCGAATGTTTTCCTCGAGAAACTTGAAGCAAAAGT
Found at i:8281862 original size:341 final size:339
Alignment explanation
Indices: 8281228--8283275 Score: 1890
Period size: 341 Copynumber: 6.1 Consensus size: 339
8281218 GTGTAGCTCT
* * *
8281228 GTTGGTAGGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATG
1 GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATG
* * * * * *
8281293 GTTTTATAGTCTCATTATTCATTTTAAATTGAATTTTTTTACAAGTTTGGTTAAAACATATTATA
66 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC-ATTTTGGTTAAAA-ATTTTATA
* * * ** * *
8281358 ATTGAAA-GTTTGCCTC-AGGAAACGTGAAGCGAAAGCCTTCCAATGGGAAGGAAAGTTCATTTA
129 ATT-AAATGTTTGCCTCGA-GAAACGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * * * *
8281421 TAGTCACTCATGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATTTGATTATTCAT
192 TAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGAT
* * * * * * * *
8281486 TTTAAGCTAAATTGTTTTACATTTTTAGTTAAAATAGATTATAATTGAATGTTTGTCACGGAAGA
257 TTTAAGTTGAATTTTTTTACATTTTTGGCTAAAACAGATTATAATTGAATGTTTGCCTCGGAA-A
* *
8281551 CATGAGGCTAAAACCCTCA
321 CGTGAAGCTAAAACCCTCA
* * * * * *
8281570 GTTGATAGGAAAAGACCATTTACAGTCACTCATACCTTTAAAAGCCTT-GTAGCTCGCTGAAAAT
1 GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA-CTCGCTTAAAAT
* * *
8281634 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTCTTTACATTTTCAGTGAAAAATTTTATA
65 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTT-GGTTAAAAATTTTATA
* *
8281699 ATTAAATGTTTGCCTCGAGAAACGTGGAA-TGAAAGCCATCCATTGACAAGAAAAGTTCGTTTAT
129 ATTAAATGTTTGCCTCGAGAAACGT-GAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * *
8281763 AGTAAAC-AATGCCTTCAGAAGCCTTATTACTCGCTTTTAACGGTTTTATAGTCTCATTATTGAT
193 AGT-CACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGAT
* * * * * * *
8281827 TTTAAGTTGAATTCTCTCACATTTTTGGCTAAAATAGATCATAATCGAATGTTTGCCTTTGGAAA
257 TTTAAGTTGAATTTTTTTACATTTTTGGCTAAAACAGATTATAATTGAATGTTTGCC-TCGGAAA
* ***
8281892 CTTGAAGC-AAAAGTGATCCA
321 CGTGAAGCTAAAA-CCCT-CA
* * * ** * *
8281912 -TTGAAAAGAAAAGTCCTTTTATAGTTGCTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
1 GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATG
* * * * * * * * **
8281976 GCTTTATAGTCTCATTATTGATTTTATGTTGAATTTTCTTAAATTTTTGGTCAAACAGATTATAA
66 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTGGTTAAAAATTTTATAA
* * * * * * ** ** * * *
8282041 TTGAATGTTTACCTCGGGAAACGTGTAGCT-AAAACCCTCTGTTGGTAGGAAAAGTCCATCTATT
130 TTAAATGTTTGCCTCGAGAAACGTGAAG-TGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * *
8282105 TTCACTCATGCCTTC-GAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATTATTGATT
194 GTCACTCATGCCTTCAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGATT
* * * ** * **
8282169 TTAAGATGAATTGTTTTAAATTTTTTATCTAAAACAGATTATTATTGAATGTTTATCTCAGGAAA
258 TTAAGTTGAATTTTTTTACA-TTTTTGGCTAAAACAGATTATAATTGAATGTTTGCCTC-GGAAA
* * *
8282234 CGTGAGGTTAAAACCCGCA
321 CGTGAAGCTAAAACCCTCA
* * * ** * *
8282253 GTTGACAGAAAAAGACCATTTATAGTCACTCATTTCTTTAGAAGCCTTATTACTCGCTTAAAATG
1 GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATG
* * * **
8282318 G--TTATAATCACATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTGATTATGAATTTTATAA
66 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTGGTTAAAAATTTTATAA
* * * * * **
8282381 TTATATGTTTGCCTTGAGAAACGTGAAGCGAAGGCCATCCGTTGACAAGAAAAGTCTGTTTATAG
130 TTAAATGTTTGCCTCGAGAAACGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * *
8282446 TCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATGGTCTCATTGTTCATTTT
195 TCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGATTTT
* * * **
8282511 AAATTGAATTTTTTTACATTTTTGGTTAAAATAGATTATAATT-ACAACTTTGCCTCGAGAAACG
260 AAGTTGAATTTTTTTACATTTTTGGCTAAAACAGATTATAATTGA-ATGTTTGCCTCG-GAAACG
*
8282575 TGAAGC-AAAAGCCTTCCAA
323 TGAAGCTAAAA-CCCT-C-A
** * * * *
8282594 GGGGA-A-GAAAAGTTCATTTATAGTTACTCATGCCTTTAAAAGCCTTATTACTCGCTTTAAATG
1 GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATG
* * * * * *
8282657 GTTTAATAATCTGATTATTGATTTTAAGCTGAATTTTTTTATA-TAT--TT-----TTTTA-AAT
66 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTGGTTAAAAATTTTATAAT
** * ** ** *
8282713 CGAATGTTTGCCTC-AGGAAACTTGAAGCAAAAGTGATCCATTGACAAGAAAAGTCCTTTTATAG
131 TAAATGTTTGCCTCGA-GAAACGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
8282777 TCGCTCATGCCTTC-GAAACCTTATTACTTGCTTTAAAT-GATTT-TAGTCTCATTATTAATTTT
195 TCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGATTTT
* * * * *
8282839 AAGTTGAATTTTCTTA-AATTTTGGGTTAAACAGATTATAATTGAATGTTTACCTCGAGAAACGT
260 AAGTTGAATTTTTTTACATTTTTGGCTAAAACAGATTATAATTGAATGTTTGCCTCG-GAAACGT
*
8282903 GTAGCT------CT--
324 GAAGCTAAAACCCTCA
* ** * *
8282911 GTTGGTAGGAAAAGTCCATTTATTTTCTCTCATGCCTTCAAAAGCCTT-GTAGCTCGCTTAAAAT
1 GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA-CTCGCTTAAAAT
* * * *
8282975 AGTTTTATATTCTCATAATTTATTTTAAGTTGAATTTTTTTTACATTTTCGGTTAAGAATTTTAT
65 GGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACATTTT-GGTTAAAAATTTTAT
* * *
8283040 AATTAAATGTTTACCTCGAGAAACGTGAAGTGAACGCCATCCATTGAAAAGAAAAGTCCATTTAT
128 AATTAAATGTTTGCCTCGAGAAACGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
*
8283105 AGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAACGGTTTTATAGTCTCATTATTGATT
193 AGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGATT
* * * *
8283170 TTAAGTTGAATTTTTTCACATTTTTGG-TTAAACAGATTATAATCGAGTGTTTGCCTCGGGAAAC
258 TTAAGTTGAATTTTTTTACATTTTTGGCTAAAACAGATTATAATTGAATGTTTGCCTC-GGAAAC
* * *
8283234 GTGAAGCGAAAGCCATCTA
322 GTGAAGCTAAAACCCTC-A
* * *
8283253 -TTGACAAGAAAAGTTCATTTATA
1 GTTGATAGGAAAAGTCCATTTATA
8283276 ATNNNNNNNN
Statistics
Matches: 1359, Mismatches: 287, Indels: 121
0.77 0.16 0.07
Matches are distributed among these distances:
317 2 0.00
318 3 0.00
319 72 0.05
320 9 0.01
321 3 0.00
324 2 0.00
327 43 0.03
328 31 0.02
329 9 0.01
330 90 0.07
331 88 0.06
332 9 0.01
333 70 0.05
334 8 0.01
337 2 0.00
338 6 0.00
339 92 0.07
340 179 0.13
341 432 0.32
342 205 0.15
343 4 0.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (339 bp):
GTTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATG
GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTGGTTAAAAATTTTATAAT
TAAATGTTTGCCTCGAGAAACGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
CACTCATGCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTCTCATTATTGATTTTA
AGTTGAATTTTTTTACATTTTTGGCTAAAACAGATTATAATTGAATGTTTGCCTCGGAAACGTGA
AGCTAAAACCCTCA
Found at i:8289174 original size:14 final size:14
Alignment explanation
Indices: 8289157--8289193 Score: 51
Period size: 12 Copynumber: 2.7 Consensus size: 14
8289147 TTCTTCACAC
8289157 TTCTTTCTCTCTCT
1 TTCTTTCTCTCTCT
8289171 TTCTTT-T-TCTCT
1 TTCTTTCTCTCTCT
8289183 TTCTCTTCTCT
1 TTCT-TTCTCT
8289194 TTAATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 9 0.45
13 3 0.15
14 7 0.35
15 1 0.05
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTCTTTCTCTCTCT
Found at i:8289183 original size:12 final size:11
Alignment explanation
Indices: 8289158--8289195 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
8289148 TCTTCACACT
8289158 TCTTTCTC-TC
1 TCTTTCTCTTC
*
8289168 TCTTTCTTTTTC
1 TCTTTC-TCTTC
8289180 TCTTTCTCTTC
1 TCTTTCTCTTC
8289191 TCTTT
1 TCTTT
8289196 AATATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 6 0.25
11 10 0.42
12 8 0.33
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (11 bp):
TCTTTCTCTTC
Found at i:8291360 original size:34 final size:34
Alignment explanation
Indices: 8291317--8291404 Score: 158
Period size: 34 Copynumber: 2.6 Consensus size: 34
8291307 TATTTTAGTC
8291317 AACGATGGAATTAACTTAAAGAAACTGTGTGATA
1 AACGATGGAATTAACTTAAAGAAACTGTGTGATA
* *
8291351 AACGATGGAATTAACTTAAAGAAACTTTGTGATT
1 AACGATGGAATTAACTTAAAGAAACTGTGTGATA
8291385 AACGATGGAATTAACTTAAA
1 AACGATGGAATTAACTTAAA
8291405 CTTTTATGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.44, C:0.09, G:0.18, T:0.28
Consensus pattern (34 bp):
AACGATGGAATTAACTTAAAGAAACTGTGTGATA
Found at i:8293550 original size:34 final size:35
Alignment explanation
Indices: 8293483--8293557 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 35
8293473 CCTTACAAAC
8293483 GCTTTTTACGAGATCAAGCAATAACCCTCACAATG
1 GCTTTTTACGAGATCAAGCAATAACCCTCACAATG
* * * * *
8293518 GCTTTTTTCGAGCTCAA-CCATAACCTTTACAATG
1 GCTTTTTACGAGATCAAGCAATAACCCTCACAATG
8293552 GCTTTT
1 GCTTTT
8293558 GATAAAAGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 20 0.57
35 15 0.43
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (35 bp):
GCTTTTTACGAGATCAAGCAATAACCCTCACAATG
Found at i:8294076 original size:19 final size:19
Alignment explanation
Indices: 8294048--8294085 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8294038 CCATTTAACT
* *
8294048 TATTGTAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
8294067 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
8294086 GGTTTAGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:8295472 original size:13 final size:13
Alignment explanation
Indices: 8295454--8295478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8295444 AGAGAAATTG
8295454 TGATTTTATAAAA
1 TGATTTTATAAAA
8295467 TGATTTTATAAA
1 TGATTTTATAAA
8295479 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:8296701 original size:15 final size:16
Alignment explanation
Indices: 8296681--8296721 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
8296671 CAGAGATTTT
8296681 GATTTTAAAG-CTTTG
1 GATTTTAAAGTCTTTG
*
8296696 GATTTTAAAGTTTTTG
1 GATTTTAAAGTCTTTG
8296712 G-TTTTAAAGT
1 GATTTTAAAGT
8296722 TGTTTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (16 bp):
GATTTTAAAGTCTTTG
Found at i:8296722 original size:15 final size:15
Alignment explanation
Indices: 8296677--8296722 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8296667 AGATCAGAGA
*
8296677 TTTTGATTTTAAAG-
1 TTTTGGTTTTAAAGT
*
8296691 CTTTGGATTTTAAAGT
1 TTTTGG-TTTTAAAGT
8296707 TTTTGGTTTTAAAGT
1 TTTTGGTTTTAAAGT
8296722 T
1 T
8296723 GTTTTAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.57
Consensus pattern (15 bp):
TTTTGGTTTTAAAGT
Found at i:8304756 original size:14 final size:14
Alignment explanation
Indices: 8304737--8304779 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
8304727 ATTCTTAATT
8304737 TTCATCAAGCAATA
1 TTCATCAAGCAATA
* **
8304751 TTCATCATGTTATA
1 TTCATCAAGCAATA
8304765 -TCATCAAGCAATA
1 TTCATCAAGCAATA
8304778 TT
1 TT
8304780 AACCAAGCAT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (14 bp):
TTCATCAAGCAATA
Found at i:8305206 original size:20 final size:21
Alignment explanation
Indices: 8305161--8305207 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
8305151 AGATGTCTCA
*
8305161 AATAATTATTTGAAATGAAAT
1 AATAATTATTTGAAATAAAAT
* *
8305182 TATAATTGTTTG-AATAAAAT
1 AATAATTATTTGAAATAAAAT
8305202 AATAAT
1 AATAAT
8305208 ATTCAATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATTATTTGAAATAAAAT
Found at i:8307657 original size:13 final size:13
Alignment explanation
Indices: 8307639--8307663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8307629 ATTTTCAAAA
8307639 ATTTTATAAAATT
1 ATTTTATAAAATT
8307652 ATTTTATAAAAT
1 ATTTTATAAAAT
8307664 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:8309920 original size:13 final size:13
Alignment explanation
Indices: 8309902--8309926 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8309892 AGAGAAATTG
8309902 TGATTTTATAAAA
1 TGATTTTATAAAA
8309915 TGATTTTATAAA
1 TGATTTTATAAA
8309927 TTTTCTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:8334808 original size:22 final size:22
Alignment explanation
Indices: 8334783--8334867 Score: 152
Period size: 22 Copynumber: 3.9 Consensus size: 22
8334773 TTTAAAACCA
*
8334783 CTTTAAAACCAAAAACTCTTAT
1 CTTTAAAACCAAAAGCTCTTAT
*
8334805 CTTTAAAACCAAAAGCTTTTAT
1 CTTTAAAACCAAAAGCTCTTAT
8334827 CTTTAAAACCAAAAGCTCTTAT
1 CTTTAAAACCAAAAGCTCTTAT
8334849 CTTTAAAACCAAAAGCTCT
1 CTTTAAAACCAAAAGCTCT
8334868 GATACCAATA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 60 1.00
ACGTcount: A:0.42, C:0.22, G:0.04, T:0.32
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTTAT
Found at i:8342392 original size:43 final size:43
Alignment explanation
Indices: 8342344--8342450 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
8342334 TTGACTCGGC
* *
8342344 TATGTGCGAGTAGGGAGTGTGCATAAGCCGATGATGACCTGGT
1 TATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCTGGT
* * * * *
8342387 TATGTGCGATTAGGGAGTGCGCGTAACCCGGTGATGACCTAGC
1 TATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCTGGT
* * *
8342430 CATGTACTAGTAGGGAGTGCG
1 TATGTGCGAGTAGGGAGTGCG
8342451 AATGAGCTGG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.24
Consensus pattern (43 bp):
TATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCTGGT
Found at i:8349739 original size:28 final size:29
Alignment explanation
Indices: 8349698--8349757 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
8349688 GTCTATGGGC
*
8349698 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
8349726 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
8349756 AA
1 AA
8349758 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:8357034 original size:35 final size:36
Alignment explanation
Indices: 8356983--8357107 Score: 155
Period size: 35 Copynumber: 3.5 Consensus size: 36
8356973 AGTATTTGAA
*
8356983 TAAAATTTTTTTAATTAAGTTGTTAGGCTTAATTAAT
1 TAAAA-TTGTTTAATTAAGTTGTTAGGCTTAATTAAT
** * *
8357020 TAAAATT-TTTAATTAAGTCATTAGGCCTAATTGAT
1 TAAAATTGTTTAATTAAGTTGTTAGGCTTAATTAAT
* **
8357055 TAAAATTGTTTAATTAAGTTGCTAGGCTTAATTACC
1 TAAAATTGTTTAATTAAGTTGTTAGGCTTAATTAAT
8357091 T-AAATTGTTTAATTAAG
1 TAAAATTGTTTAATTAAG
8357108 GTATGGGCCT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
35 47 0.62
36 24 0.32
37 5 0.07
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (36 bp):
TAAAATTGTTTAATTAAGTTGTTAGGCTTAATTAAT
Found at i:8357069 original size:71 final size:71
Alignment explanation
Indices: 8356978--8357128 Score: 200
Period size: 71 Copynumber: 2.1 Consensus size: 71
8356968 TCTCAAGTAT
* * * *
8356978 TTGAATAAAATTTTTTTAATTAAGTTGTTAGGCTTAATTAATTAAAATT-TTTAATTAA-GTCAT
1 TTGATTAAAATTTGTTTAATTAAGTTGCTAGGCTTAATTAACT-AAATTGTTTAATTAAGGT-A-
8357041 TAGGCCTAA
63 TAGGCCTAA
* *
8357050 TTGATTAAAA-TTGTTTAATTAAGTTGCTAGGCTTAATTACCTAAATTGTTTAATTAAGGTATGG
1 TTGATTAAAATTTGTTTAATTAAGTTGCTAGGCTTAATTAACTAAATTGTTTAATTAAGGTATAG
8357114 GCCTAA
66 GCCTAA
8357120 TTGATTAAA
1 TTGATTAAA
8357129 TTAAACAATT
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
70 22 0.31
71 38 0.54
72 11 0.15
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.44
Consensus pattern (71 bp):
TTGATTAAAATTTGTTTAATTAAGTTGCTAGGCTTAATTAACTAAATTGTTTAATTAAGGTATAG
GCCTAA
Found at i:8357081 original size:36 final size:36
Alignment explanation
Indices: 8356978--8357128 Score: 150
Period size: 35 Copynumber: 4.2 Consensus size: 36
8356968 TCTCAAGTAT
* * *
8356978 TTGAATAAAATTTTTTTAATTAAGTTGTTAGGCTTAA
1 TTGATTAAAA-TTGTTTAATTAAGTTGTTAGGCCTAA
* **
8357015 TTAATTAAAATT-TTTAATTAAGTCATTAGGCCTAA
1 TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
* *
8357050 TTGATTAAAATTGTTTAATTAAGTTGCTAGGCTTAA
1 TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
* *
8357086 TT-ACCT-AAATTGTTTAATTAAG--GTATGGGCCTAA
1 TTGA-TTAAAATTGTTTAATTAAGTTGT-TAGGCCTAA
8357120 TTGATTAAA
1 TTGATTAAA
8357129 TTAAACAATT
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
33 1 0.01
34 10 0.11
35 51 0.54
36 24 0.26
37 8 0.09
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.44
Consensus pattern (36 bp):
TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
Found at i:8366441 original size:18 final size:18
Alignment explanation
Indices: 8366410--8366444 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8366400 AGAAATGATG
*
8366410 AATTTAAATTATTATATA
1 AATTTAAATAATTATATA
*
8366428 AATTTTAATAATTATAT
1 AATTTAAATAATTATAT
8366445 TCATATAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTTAAATAATTATATA
Found at i:8367797 original size:27 final size:27
Alignment explanation
Indices: 8367762--8367816 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8367752 CAATTTTTCC
* *
8367762 ATTCCAGTTTTGATAGAATTTGAGTTT
1 ATTCAAGTTTTAATAGAATTTGAGTTT
8367789 ATTCAAGTTTTAATAGAATTTGAGTTT
1 ATTCAAGTTTTAATAGAATTTGAGTTT
8367816 A
1 A
8367817 ATTATAGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.47
Consensus pattern (27 bp):
ATTCAAGTTTTAATAGAATTTGAGTTT
Found at i:8368402 original size:2 final size:2
Alignment explanation
Indices: 8368390--8368440 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
8368380 TCGTGAGTGT
8368390 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8368431 TA TA TA TA TA
1 TA TA TA TA TA
8368441 CAATTTGCTT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8371224 original size:15 final size:15
Alignment explanation
Indices: 8371204--8371232 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8371194 TGACTGAGTC
8371204 TTTTATTTGGTTTTT
1 TTTTATTTGGTTTTT
8371219 TTTTATTTGGTTTT
1 TTTTATTTGGTTTT
8371233 ACGTATGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (15 bp):
TTTTATTTGGTTTTT
Found at i:8373773 original size:44 final size:44
Alignment explanation
Indices: 8373710--8373799 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
8373700 AGAATTTGGG
*
8373710 TTGTTGATGCAAGAGCACAAGAATGGGTAGACAAATTGAATGCT
1 TTGTTGATGCAAGAGCACAAGAATAGGTAGACAAATTGAATGCT
8373754 TTGTTGATGCAAGAGCACAAGAATAGGTAGACAAATTGAATGCT
1 TTGTTGATGCAAGAGCACAAGAATAGGTAGACAAATTGAATGCT
8373798 TT
1 TT
8373800 CTCTTCCTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.27
Consensus pattern (44 bp):
TTGTTGATGCAAGAGCACAAGAATAGGTAGACAAATTGAATGCT
Found at i:8380576 original size:1 final size:1
Alignment explanation
Indices: 8380572--8380599 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
8380562 TTTAAAAAAA
8380572 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
8380600 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8380604 original size:2 final size:2
Alignment explanation
Indices: 8380599--8380641 Score: 70
Period size: 2 Copynumber: 21.5 Consensus size: 2
8380589 TTTTTTTTTT
8380599 TA TA TA TA TA TA TA TA TA CTA TA TA TA TA TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
8380641 T
1 T
8380642 TGAGTTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.03
2 36 0.92
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8380623 original size:13 final size:12
Alignment explanation
Indices: 8380599--8380641 Score: 70
Period size: 13 Copynumber: 3.6 Consensus size: 12
8380589 TTTTTTTTTT
8380599 TATATATATATA
1 TATATATATATA
8380611 TATATACTATATA
1 TATATA-TATATA
8380624 TATATA-ATATA
1 TATATATATATA
8380635 TATATAT
1 TATATAT
8380642 TGAGTTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.38
12 6 0.21
13 12 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (12 bp):
TATATATATATA
Found at i:8384963 original size:139 final size:138
Alignment explanation
Indices: 8384713--8384989 Score: 545
Period size: 139 Copynumber: 2.0 Consensus size: 138
8384703 TCTCTGCCCC
8384713 CACAAGGCTTTTATGTTTCGTAAAATTTACCAGCAATAAATTGGACTTTATATTTATAAAGTTCA
1 CACAAGGCTTTTATGTTTCGTAAAATTTACCAGCAATAAATTGGACTTTATATTTATAAAGTTCA
8384778 TACTATTTCTATTCATATACACACGTATGCATGCATATATATGTAATTTTTTTAAATAAATAATA
66 TACTATTTCTATTCATATACACACGTATGCATGCATATATATGTAATTTTTTTAAATAAATAATA
8384843 TTTCTTAT
131 TTTCTTAT
8384851 NCACAAGGCTTTTATGTTTCGTAAAATTTACCAGCAATAAATTGGACTTTATATTTATAAAGTTC
1 -CACAAGGCTTTTATGTTTCGTAAAATTTACCAGCAATAAATTGGACTTTATATTTATAAAGTTC
8384916 ATACTATTTCTATTCATATACACACGTATGCATGCATATATATGTAATTTTTTTAAATAAATAAT
65 ATACTATTTCTATTCATATACACACGTATGCATGCATATATATGTAATTTTTTTAAATAAATAAT
8384981 ATTTCTTAT
130 ATTTCTTAT
8384990 TTTTCGTAAA
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
139 138 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (138 bp):
CACAAGGCTTTTATGTTTCGTAAAATTTACCAGCAATAAATTGGACTTTATATTTATAAAGTTCA
TACTATTTCTATTCATATACACACGTATGCATGCATATATATGTAATTTTTTTAAATAAATAATA
TTTCTTAT
Found at i:8398866 original size:2 final size:2
Alignment explanation
Indices: 8398853--8398884 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8398843 TTGCTATTCA
*
8398853 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8398885 TAAATTAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8400063 original size:17 final size:17
Alignment explanation
Indices: 8400033--8400076 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
8400023 TTTTATTAAT
* *
8400033 TATTTTTTACTTTTATA
1 TATTTTTAATTTTTATA
*
8400050 TTTTTTTAATTTTTATA
1 TATTTTTAATTTTTATA
8400067 TATTTTTAAT
1 TATTTTTAAT
8400077 ATAATTAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (17 bp):
TATTTTTAATTTTTATA
Found at i:8414908 original size:19 final size:19
Alignment explanation
Indices: 8414870--8414908 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8414860 TAGATGGAAA
*
8414870 ACATCATATGATCCATCAT
1 ACATCATATGATCCAACAT
8414889 ACATCATATGTAT-CAACAT
1 ACATCATATG-ATCCAACAT
8414908 A
1 A
8414909 TCAAGCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (19 bp):
ACATCATATGATCCAACAT
Found at i:8416410 original size:2 final size:2
Alignment explanation
Indices: 8416403--8416448 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
8416393 TATGCAAAAG
* *
8416403 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA -A TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8416444 TA TA T
1 TA TA T
8416449 GATTGAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8417823 original size:37 final size:37
Alignment explanation
Indices: 8417716--8417825 Score: 94
Period size: 37 Copynumber: 3.0 Consensus size: 37
8417706 CCTCAGCTCT
* * *** * * *
8417716 TGTGCACTCCCTACACGCACAAGGCAATACCACCATA
1 TGTGCACTCCCTACTCACACACCTCAATATCATCATG
* * ** *
8417753 TGTGCACTCCTTACTCGCACATTTCAATGTCATCATG
1 TGTGCACTCCCTACTCACACACCTCAATATCATCATG
*
8417790 TGTGCACTCCCTACTCACACACCTCATTATCATCAT
1 TGTGCACTCCCTACTCACACACCTCAATATCATCAT
8417826 ACAACATTAT
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.26, C:0.35, G:0.11, T:0.27
Consensus pattern (37 bp):
TGTGCACTCCCTACTCACACACCTCAATATCATCATG
Found at i:8421088 original size:17 final size:17
Alignment explanation
Indices: 8421068--8421129 Score: 58
Period size: 16 Copynumber: 3.7 Consensus size: 17
8421058 TTATTAATTA
8421068 ATTATTATTTTTATTTT
1 ATTATTATTTTTATTTT
*
8421085 ATTA-TATTTTT-TATT
1 ATTATTATTTTTATTTT
*
8421100 ATTTTTA-TTTTATTTCT
1 ATTATTATTTTTATTT-T
*
8421117 AATTACTATTTTT
1 -ATTATTATTTTT
8421130 TTACACCTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
15 10 0.29
16 11 0.31
17 5 0.14
18 5 0.14
19 4 0.11
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTATTATTTTTATTTT
Found at i:8421121 original size:21 final size:21
Alignment explanation
Indices: 8421081--8421121 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8421071 ATTATTTTTA
* *
8421081 TTTTATTATATTTTTTATTAT
1 TTTTATTATATTTCTAATTAT
*
8421102 TTTTATTTTATTTCTAATTA
1 TTTTATTATATTTCTAATTA
8421122 CTATTTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTATTATATTTCTAATTAT
Found at i:8421130 original size:26 final size:26
Alignment explanation
Indices: 8421055--8421132 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 26
8421045 TAGTTTTTAG
*
8421055 TTATTATTAATTAATTATTATTTTTATT
1 TTATTA-TAATT-ACTATTATTTTTATT
* **
8421083 TTATTATATTTTTTATTATTTTTATT
1 TTATTATAATTACTATTATTTTTATT
*
8421109 TTATTTCTAATTACTATT-TTTTTA
1 TTA-TTATAATTACTATTATTTTTA
8421133 CACCTTACAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
26 23 0.53
27 14 0.33
28 6 0.14
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.71
Consensus pattern (26 bp):
TTATTATAATTACTATTATTTTTATT
Found at i:8422224 original size:13 final size:13
Alignment explanation
Indices: 8422206--8422233 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8422196 TTTTCTTTCC
8422206 TCCCCTTTCATTT
1 TCCCCTTTCATTT
8422219 TCCCCTTTCATTT
1 TCCCCTTTCATTT
8422232 TC
1 TC
8422234 TCTCTCTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.39, G:0.00, T:0.54
Consensus pattern (13 bp):
TCCCCTTTCATTT
Found at i:8422416 original size:28 final size:28
Alignment explanation
Indices: 8422384--8422437 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
8422374 TGAATCAAGC
8422384 TTCTCTTTCTCTCTCACCTT-CCGACGGT
1 TTCTCTTTCTCTCTCA-CTTGCCGACGGT
*
8422412 TTCTCTTTCTCTTTCACTTGCCGACG
1 TTCTCTTTCTCTCTCACTTGCCGACG
8422438 CGAAACCTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.07, C:0.37, G:0.11, T:0.44
Consensus pattern (28 bp):
TTCTCTTTCTCTCTCACTTGCCGACGGT
Found at i:8428465 original size:37 final size:37
Alignment explanation
Indices: 8428358--8428467 Score: 94
Period size: 37 Copynumber: 3.0 Consensus size: 37
8428348 CCTCAGCTCT
* * *** * * *
8428358 TGTGCACTCCCTACACGCACAAGGCAATACCACCATA
1 TGTGCACTCCCTACTCACACACCTCAATATCATCATG
* * ** *
8428395 TGTGCACTCCTTACTCGCACATTTCAATGTCATCATG
1 TGTGCACTCCCTACTCACACACCTCAATATCATCATG
*
8428432 TGTGCACTCCCTACTCACACACCTCATTATCATCAT
1 TGTGCACTCCCTACTCACACACCTCAATATCATCAT
8428468 ACAACATTAT
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.26, C:0.35, G:0.11, T:0.27
Consensus pattern (37 bp):
TGTGCACTCCCTACTCACACACCTCAATATCATCATG
Found at i:8430661 original size:24 final size:24
Alignment explanation
Indices: 8430632--8430680 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8430622 TATCATCAGC
8430632 ATACAAAATAAGAAAGATAAACTT
1 ATACAAAATAAGAAAGATAAACTT
8430656 ATACAAAATAAGAAAGATAAACTT
1 ATACAAAATAAGAAAGATAAACTT
8430680 A
1 A
8430681 CTCCCACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.20
Consensus pattern (24 bp):
ATACAAAATAAGAAAGATAAACTT
Found at i:8445783 original size:27 final size:27
Alignment explanation
Indices: 8445732--8445783 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
8445722 ATATCCTGGT
*
8445732 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTGACCCTGA
*
8445759 GGTGGTAAAATTACCATTTT-ACCCT
1 GGTGG-AAAATTACAATTTTGACCCT
8445784 TATACTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTGACCCTGA
Found at i:8445854 original size:20 final size:20
Alignment explanation
Indices: 8445829--8445874 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
8445819 CTTCTAAACC
8445829 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
8445849 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
8445869 TCAAAT
1 TCAAAT
8445875 GGGGCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:8460862 original size:39 final size:40
Alignment explanation
Indices: 8460808--8460894 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 40
8460798 AGATTCAATC
* * * *
8460808 TCGCTGCAGCGAAATTTCTACCCA-TAAACAGAATGTTTA
1 TCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTTTA
* *
8460847 TCGCTGCAGCGAAATTGCAACCCAGAAAATAGAAAGTTTC
1 TCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTTTA
8460887 TCGCTGCA
1 TCGCTGCA
8460895 ACGAGAATGC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
39 22 0.54
40 19 0.46
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (40 bp):
TCGCTGCAGCGAAATTGCAACCCAGAAAACAGAAAGTTTA
Found at i:8461307 original size:43 final size:43
Alignment explanation
Indices: 8461259--8461390 Score: 158
Period size: 43 Copynumber: 3.1 Consensus size: 43
8461249 CCCATCATCA
* * ** *
8461259 TCATCACCAGCTCATGCGCACTCCCTACTCACACATGGCTGGG
1 TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
* *
8461302 TCATCACCAGGTTATGCGCACTCTCTACTCGCACATAACCGGG
1 TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
* * *
8461345 TCATC-CTCGGCTTATGCGCACTCCCTACTCGCACATAGCCGAG
1 TCATCAC-CAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
8461388 TCA
1 TCA
8461391 ATATAATTAC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 1 0.01
43 75 0.99
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.23
Consensus pattern (43 bp):
TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
Found at i:8465171 original size:22 final size:23
Alignment explanation
Indices: 8465141--8465187 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
8465131 GTATAGAGTT
8465141 ATTTGAGCTTAATT-TTGATAGTA
1 ATTTGAGCTTAATTCTT-ATAGTA
*
8465164 ATTT-AGCTTAGTTCTTATAGTA
1 ATTTGAGCTTAATTCTTATAGTA
8465186 AT
1 AT
8465188 GCATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.49
Consensus pattern (23 bp):
ATTTGAGCTTAATTCTTATAGTA
Found at i:8467888 original size:21 final size:21
Alignment explanation
Indices: 8467854--8467908 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
8467844 GTAGTTTATG
8467854 ACAAAGAC-GATGCATTCATA
1 ACAAAGACTGATGCATTCATA
* *
8467874 ACAAAGACTGATGCATTTATG
1 ACAAAGACTGATGCATTCATA
*
8467895 ACAAGGACTGATGC
1 ACAAAGACTGATGC
8467909 CTCCATTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 8 0.26
21 23 0.74
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (21 bp):
ACAAAGACTGATGCATTCATA
Found at i:8469377 original size:11 final size:12
Alignment explanation
Indices: 8469346--8469375 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
8469336 AGGTACATGT
8469346 AAAAAAATTTCA
1 AAAAAAATTTCA
8469358 AAAAAAATTTCA
1 AAAAAAATTTCA
8469370 AAAAAA
1 AAAAAA
8469376 TTAAAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAAAATTTCA
Found at i:8470756 original size:35 final size:35
Alignment explanation
Indices: 8470710--8470788 Score: 124
Period size: 35 Copynumber: 2.3 Consensus size: 35
8470700 AGCTTTAACT
8470710 GCTGATTTTGAAGGCTGAAAGGTGC-AGTTTTGGTG
1 GCTGATTTTGAAGGCTGAAAGGTGCGA-TTTTGGTG
*
8470745 GCTGATTTTGAAGGCTGAAAGGTGCGATTTTGGTT
1 GCTGATTTTGAAGGCTGAAAGGTGCGATTTTGGTG
*
8470780 GCTAATTTT
1 GCTGATTTT
8470789 TATAGTTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
35 40 0.98
36 1 0.02
ACGTcount: A:0.20, C:0.09, G:0.33, T:0.38
Consensus pattern (35 bp):
GCTGATTTTGAAGGCTGAAAGGTGCGATTTTGGTG
Found at i:8471050 original size:5 final size:5
Alignment explanation
Indices: 8471042--8471100 Score: 73
Period size: 5 Copynumber: 11.2 Consensus size: 5
8471032 TTGGTGAGAG
* *
8471042 AGAAG AGAAA GAGAAA GAGAGAA AGAAA AGAAA AGAAA AGAAA AGAAG
1 AGAAA AGAAA -AGAAA -AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA
8471090 AGAAA AGAAA A
1 AGAAA AGAAA A
8471101 AATATATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
5 35 0.71
6 12 0.24
7 2 0.04
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:8471062 original size:19 final size:19
Alignment explanation
Indices: 8471038--8471087 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 19
8471028 CAGATTGGTG
8471038 AGAGAGAAGAGAAAGAGAA
1 AGAGAGAAGAGAAAGAGAA
8471057 AGAGAGAA-AGAAA-AGAA
1 AGAGAGAAGAGAAAGAGAA
*
8471074 A-AGAAAAGA-AAAGA
1 AGAGAGAAGAGAAAGA
8471088 AGAGAAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 8 0.29
17 7 0.25
18 5 0.18
19 8 0.29
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AGAGAGAAGAGAAAGAGAA
Found at i:8471167 original size:25 final size:25
Alignment explanation
Indices: 8471120--8471176 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
8471110 ATATGCATAT
*
8471120 AAATGGACATGACCCAACAAGAAA-
1 AAATGGGCATGACCCAACAAGAAAG
**
8471144 AGAATGGGCATGACCCAATTAGAAAG
1 A-AATGGGCATGACCCAACAAGAAAG
8471170 AAATGGG
1 AAATGGG
8471177 AAGAGCCCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.47, C:0.16, G:0.25, T:0.12
Consensus pattern (25 bp):
AAATGGGCATGACCCAACAAGAAAG
Found at i:8474433 original size:60 final size:60
Alignment explanation
Indices: 8474285--8474444 Score: 144
Period size: 60 Copynumber: 2.7 Consensus size: 60
8474275 GATAGGAGAC
* * * * *
8474285 AAACAGAGAGTTTTTTGCTGCAGCGAGATTGAATCTCACTGCAGCGAAATTGTAACCCAG
1 AAACAGAGAGTTTTTCGCTGCAGCGAGATTCATTTTCACTGCAGCGAAATTGCAACCCAG
* * * * * * * **
8474345 AAATAGA-AGGTTTCTCGCTGTAGTGAGATTCTTTTTCACTGTAGCGAAATT-CAGCTGATG
1 AAACAGAGA-GTTTTTCGCTGCAGCGAGATTCATTTTCACTGCAGCGAAATTGCAACCCA-G
* *
8474405 AAACAGAGAGTTTTTGGCTGCAGCGAGATTCCTTTTCACT
1 AAACAGAGAGTTTTTCGCTGCAGCGAGATTCATTTTCACT
8474445 ACAACGAGAA
Statistics
Matches: 77, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
59 4 0.05
60 72 0.94
61 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (60 bp):
AAACAGAGAGTTTTTCGCTGCAGCGAGATTCATTTTCACTGCAGCGAAATTGCAACCCAG
Found at i:8474883 original size:2 final size:2
Alignment explanation
Indices: 8474878--8474903 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8474868 CAATATATTC
8474878 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8474904 CAACACAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8478621 original size:19 final size:20
Alignment explanation
Indices: 8478594--8478639 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8478584 AGGAGACAAG
*
8478594 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
8478613 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
8478632 ATAATATT
1 ATAATATT
8478640 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:8479086 original size:20 final size:20
Alignment explanation
Indices: 8479041--8479078 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8479031 TTTTGGCCCC
8479041 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
8479061 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
8479079 AGATTTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:8480340 original size:13 final size:13
Alignment explanation
Indices: 8480322--8480346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8480312 AGAGAAATTG
8480322 TGATTTTATAAAA
1 TGATTTTATAAAA
8480335 TGATTTTATAAA
1 TGATTTTATAAA
8480347 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:8483893 original size:2 final size:2
Alignment explanation
Indices: 8483888--8483919 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8483878 AGTTTTACAC
8483888 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8483920 GCTCTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8485394 original size:20 final size:19
Alignment explanation
Indices: 8485350--8485394 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8485340 TTTTGTTAAT
8485350 TGAAAATAAAGAAATCAAA
1 TGAAAATAAAGAAATCAAA
* * *
8485369 TAAAAATAAATAAAGTCAAG
1 TGAAAATAAAGAAA-TCAAA
8485389 TGAAAA
1 TGAAAA
8485395 AATTCAGCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.18
Consensus pattern (19 bp):
TGAAAATAAAGAAATCAAA
Found at i:8486123 original size:30 final size:30
Alignment explanation
Indices: 8486082--8486141 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
8486072 TTAGGAACTC
*
8486082 GGGCTAGTAAAGTTCATTGTAAGGTAAGTG
1 GGGCTACTAAAGTTCATTGTAAGGTAAGTG
8486112 GGGCTACTAAAGTTCATTGTAAGGTAAGTG
1 GGGCTACTAAAGTTCATTGTAAGGTAAGTG
8486142 TCCTACCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (30 bp):
GGGCTACTAAAGTTCATTGTAAGGTAAGTG
Found at i:8497762 original size:27 final size:27
Alignment explanation
Indices: 8497725--8497782 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
8497715 CTAGATAAGA
*
8497725 AAACTACATGATCTGATTTGGACACTG
1 AAACTACATGACCTGATTTGGACACTG
*
8497752 AAACTGCATGACCTGATTTGGACACTG
1 AAACTACATGACCTGATTTGGACACTG
8497779 AAAC
1 AAAC
8497783 ACAATTACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AAACTACATGACCTGATTTGGACACTG
Found at i:8500724 original size:17 final size:16
Alignment explanation
Indices: 8500691--8500739 Score: 66
Period size: 15 Copynumber: 3.1 Consensus size: 16
8500681 CTAAGTTCAT
*
8500691 TTACTTG-TTTGTTTA
1 TTACTTGTTTTTTTTA
8500706 TTCACTTGTTTTTTTTA
1 TT-ACTTGTTTTTTTTA
8500723 TT-CTTGTTTTTTTTA
1 TTACTTGTTTTTTTTA
8500738 TT
1 TT
8500740 TCCATTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 17 0.55
16 5 0.16
17 9 0.29
ACGTcount: A:0.10, C:0.08, G:0.08, T:0.73
Consensus pattern (16 bp):
TTACTTGTTTTTTTTA
Found at i:8501117 original size:55 final size:56
Alignment explanation
Indices: 8500981--8501119 Score: 133
Period size: 55 Copynumber: 2.5 Consensus size: 56
8500971 TGATTTTCAT
* *
8500981 CAAAACATTGGGAAAGCTTAGAAAAAAAGTTTCCTAAAAACACTATTGATTTTTGT
1 CAAAACATTGGGAAAGCTCAGAAAAAAAGTTTCCTAAAAACACTATTGATTTTTGC
** * * ** *
8501037 CAAAATGTTGGGAAA-ATCATGAAAAATA-TTTTTTAAAAGA-A-TTTTAGATTTTTGC
1 CAAAACATTGGGAAAGCTCA-GAAAAAAAGTTTCCTAAAA-ACACTATT-GATTTTTGC
*
8501092 CAAAACATTGGGAAAGCTCAAAAAAAAA
1 CAAAACATTGGGAAAGCTCAGAAAAAAA
8501120 AATTAGTTTT
Statistics
Matches: 65, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
54 3 0.05
55 38 0.58
56 24 0.37
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.29
Consensus pattern (56 bp):
CAAAACATTGGGAAAGCTCAGAAAAAAAGTTTCCTAAAAACACTATTGATTTTTGC
Found at i:8501237 original size:51 final size:54
Alignment explanation
Indices: 8501122--8501242 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 54
8501112 AAAAAAAAAA
** * * * * *
8501122 TTAGTTTTCACCAAAACATTGAGAAAACTAAGAAAGTTTTTCTTTCAAAATTTT
1 TTAGTTTTTGCCAAAACATTAAGAAAACTAAAAAAATATATCTTTCAAAATTTT
*
8501176 TT-GAATTTTGCCAAAACATTAAGAAAA-TAAAAAAATATAT-TTT-AAAATTTT
1 TTAG-TTTTTGCCAAAACATTAAGAAAACTAAAAAAATATATCTTTCAAAATTTT
8501227 TTAGTTTTTGCCAAAA
1 TTAGTTTTTGCCAAAA
8501243 TCAGGGATAC
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
51 21 0.38
52 4 0.07
53 10 0.18
54 21 0.38
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (54 bp):
TTAGTTTTTGCCAAAACATTAAGAAAACTAAAAAAATATATCTTTCAAAATTTT
Found at i:8504671 original size:14 final size:14
Alignment explanation
Indices: 8504652--8504678 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8504642 ATATCCTTGG
8504652 ATACTTGGATATCC
1 ATACTTGGATATCC
8504666 ATACTTGGATATC
1 ATACTTGGATATC
8504679 TTGGATATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (14 bp):
ATACTTGGATATCC
Found at i:8504685 original size:23 final size:22
Alignment explanation
Indices: 8504647--8504689 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
8504637 TGGAGATATC
8504647 CTTGGATACTTGGATATCCATA
1 CTTGGATACTTGGATATCCATA
8504669 CTTGGATATCTTGGATATCCA
1 CTTGGATA-CTTGGATATCCA
8504690 ACTATCCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (22 bp):
CTTGGATACTTGGATATCCATA
Found at i:8515183 original size:50 final size:50
Alignment explanation
Indices: 8515117--8515227 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
8515107 TCTATACTCG
* * *** *
8515117 AATAAATAACTTTTCTTTTGAAGGTTTTGCAATTTTAAATAAATTTGAAA
1 AATAAATAACTTTTCTTCTAAAGGTTCCACAACTTTAAATAAATTTGAAA
*
8515167 ATTAAATAA-TTCTTCTTCTAAAGGTTCCACAACTTTAAATAAATTTGAAA
1 AATAAATAACTT-TTCTTCTAAAGGTTCCACAACTTTAAATAAATTTGAAA
8515217 AATAAATAACT
1 AATAAATAACT
8515228 CATCTTAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.04
50 48 0.94
51 1 0.02
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (50 bp):
AATAAATAACTTTTCTTCTAAAGGTTCCACAACTTTAAATAAATTTGAAA
Done.