Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 24 of 30
Found at i:8515277 original size:32 final size:32
Alignment explanation
Indices: 8515211--8515300 Score: 139
Period size: 32 Copynumber: 2.9 Consensus size: 32
8515201 TTAAATAAAT
* *
8515211 TTGAAAAATAAATAACTCATC--TTAAATGAT
1 TTGAAAAATAAATCACTCATCTTTTAAATGAC
8515241 TTGAAAAATAAATCACTCATCTTTTAAATGAC
1 TTGAAAAATAAATCACTCATCTTTTAAATGAC
*
8515273 TTGAAAAATAAATCAATCATCTTTTAAA
1 TTGAAAAATAAATCACTCATCTTTTAAA
8515301 GAATTAACAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 20 0.36
32 35 0.64
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (32 bp):
TTGAAAAATAAATCACTCATCTTTTAAATGAC
Found at i:8515481 original size:49 final size:50
Alignment explanation
Indices: 8515428--8515578 Score: 193
Period size: 49 Copynumber: 3.1 Consensus size: 50
8515418 TTTGAAAATA
* * *
8515428 AAAGGCTCCACAACTTTAAAGGAATTTAAAAATAAATAACTCCTT-TTGT
1 AAAGGCTCTACAACTTTAAATGAATTTAAAAATAAATAACTCCTTCTTAT
* *
8515477 AAAGGCTTTACAACTTTAAATG-ATTTAGAAAATAAATAACT-TTTCTTAT
1 AAAGGCTCTACAACTTTAAATGAATTTA-AAAATAAATAACTCCTTCTTAT
* * *
8515526 AAAGACTCTACAACTTTAAATGAATTTTAAAATAAATAACTCC-TCGTAT
1 AAAGGCTCTACAACTTTAAATGAATTTAAAAATAAATAACTCCTTCTTAT
8515575 AAAG
1 AAAG
8515579 TCTCCGTAAC
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
48 7 0.08
49 77 0.88
50 4 0.05
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (50 bp):
AAAGGCTCTACAACTTTAAATGAATTTAAAAATAAATAACTCCTTCTTAT
Found at i:8515578 original size:130 final size:129
Alignment explanation
Indices: 8515325--8515561 Score: 284
Period size: 130 Copynumber: 1.8 Consensus size: 129
8515315 AAATACTTAG
8515325 AAAAATAAATAACTCCTTTTCTGAAAGCTCCACAACTTTAAATGAATTTGAAAAATAAATAATTT
1 AAAAATAAATAACTCCTTTTCTGAAAGCTCCACAACTTTAAATGAATTTGAAAAATAAATAATTT
* * ** * *
8515390 TCTTACAAAGGCTCCACAACTTTGTTTTTTTGAAAATAAAAGGCTCCACAACTTTAAAGGAATTT
66 TCTTACAAAGACTCCACAACTTTATAATTTTGAAAATAAAAGACTCCAC-ACTATAAAGGAATTT
* **
8515455 AAAAATAAATAACTCCTTTTGT-AAAGGCTTTACAACTTTAAATG-ATTT-AGAAAATAAATAAC
1 AAAAATAAATAACTCCTTTTCTGAAA-GCTCCACAACTTTAAATGAATTTGA-AAAATAAATAA-
* *
8515517 TTTTCTTATAAAGACTCTACAACTTTAAATGAATTTT-AAAATAAA
63 TTTTCTTACAAAGACTCCACAACTTT--AT-AATTTTGAAAATAAA
8515562 TAACTCCTCG
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
128 1 0.01
129 18 0.20
130 60 0.65
132 9 0.10
133 4 0.04
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (129 bp):
AAAAATAAATAACTCCTTTTCTGAAAGCTCCACAACTTTAAATGAATTTGAAAAATAAATAATTT
TCTTACAAAGACTCCACAACTTTATAATTTTGAAAATAAAAGACTCCACACTATAAAGGAATTT
Found at i:8515631 original size:41 final size:41
Alignment explanation
Indices: 8515554--8515632 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
8515544 AATGAATTTT
* **
8515554 AAAATAAATAACTCCTCGTATAAAGTCTCCGTAACTTTTGA
1 AAAATAAATAACTCCTCGTATAAAGGCTCCACAACTTTTGA
8515595 AAAATAAATAACTCTTCTC-T-TAAAGGCTCCACAACTTT
1 AAAATAAATAACTC--CTCGTATAAAGGCTCCACAACTTT
8515633 AAAAATGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 29 0.88
42 1 0.03
43 3 0.09
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.32
Consensus pattern (41 bp):
AAAATAAATAACTCCTCGTATAAAGGCTCCACAACTTTTGA
Found at i:8515685 original size:22 final size:23
Alignment explanation
Indices: 8515660--8515710 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
8515650 TAATAAGTGT
* *
8515660 TGATTAGCCAAATGTTTT-AAAG
1 TGATTAGCCAAAGGTTTTGAAAA
* *
8515682 TGATTATCCAGAGGTTTTGAAAA
1 TGATTAGCCAAAGGTTTTGAAAA
8515705 TGATTA
1 TGATTA
8515711 TTTAATGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (23 bp):
TGATTAGCCAAAGGTTTTGAAAA
Found at i:8517167 original size:19 final size:19
Alignment explanation
Indices: 8517143--8517180 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8517133 CTATTTAACT
*
8517143 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
8517162 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
8517181 GGTTTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:8518597 original size:13 final size:13
Alignment explanation
Indices: 8518579--8518604 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8518569 AAAAGAAATT
8518579 ATGATTTTATAAA
1 ATGATTTTATAAA
8518592 ATGATTTTATAAA
1 ATGATTTTATAAA
8518605 TTTTCTAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
ATGATTTTATAAA
Found at i:8519848 original size:15 final size:15
Alignment explanation
Indices: 8519803--8519848 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
8519793 AGATCAGAGA
*
8519803 TTTTGATTTTAAAGC
1 TTTTGATTTTAAAGT
* *
8519818 TTTGGATTTTAGAGT
1 TTTTGATTTTAAAGT
8519833 TTTTGATTTTAAAGT
1 TTTTGATTTTAAAGT
8519848 T
1 T
8519849 GTTTTAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.57
Consensus pattern (15 bp):
TTTTGATTTTAAAGT
Found at i:8519893 original size:5 final size:5
Alignment explanation
Indices: 8519883--8519915 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
8519873 TGCATGGCCC
8519883 AAGTT AAGTT AAGTT AAGTT -AGTT AAGTT AAGT
1 AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGT
8519916 CAGGTTTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
AAGTT
Found at i:8519908 original size:14 final size:15
Alignment explanation
Indices: 8519883--8519915 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
8519873 TGCATGGCCC
8519883 AAGTTAAGTTAAGTT
1 AAGTTAAGTTAAGTT
8519898 AAGTT-AGTTAAGTT
1 AAGTTAAGTTAAGTT
8519912 AAGT
1 AAGT
8519916 CAGGTTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (15 bp):
AAGTTAAGTTAAGTT
Found at i:8529933 original size:10 final size:10
Alignment explanation
Indices: 8529918--8529959 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
8529908 TTTTTCTTAC
8529918 CTTTCTTTCT
1 CTTTCTTTCT
*
8529928 CTTTCTTTCC
1 CTTTCTTTCT
8529938 CATTTCTTTCT
1 C-TTTCTTTCT
*
8529949 CTCTCTTTCT
1 CTTTCTTTCT
8529959 C
1 C
8529960 ATCGTCGGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (10 bp):
CTTTCTTTCT
Found at i:8550769 original size:27 final size:28
Alignment explanation
Indices: 8550714--8550773 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
8550704 TTTTTGAAAT
*
8550714 TTACACTTTTACCCCGTAAAAGTCAAAAA
1 TTACACTTTTACCCCG-AAAACTCAAAAA
* *
8550743 TTACATTTTTACCCC-AAAACTGAAAAA
1 TTACACTTTTACCCCGAAAACTCAAAAA
8550770 TTAC
1 TTAC
8550774 CCGTAGACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 14 0.50
29 14 0.50
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (28 bp):
TTACACTTTTACCCCGAAAACTCAAAAA
Found at i:8550961 original size:19 final size:19
Alignment explanation
Indices: 8550937--8550974 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8550927 CTGCCAAACT
*
8550937 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
8550956 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
8550975 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:8552334 original size:5 final size:5
Alignment explanation
Indices: 8552326--8552358 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
8552316 ACCTAACCTG
8552326 ACTTA ACTTA AC-TA ACTTA ACTTA ACTTA ACTT
1 ACTTA ACTTA ACTTA ACTTA ACTTA ACTTA ACTT
8552359 GGGCCACGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (5 bp):
ACTTA
Found at i:8552345 original size:14 final size:15
Alignment explanation
Indices: 8552326--8552358 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
8552316 ACCTAACCTG
8552326 ACTTAACTTAAC-TA
1 ACTTAACTTAACTTA
8552340 ACTTAACTTAACTTA
1 ACTTAACTTAACTTA
8552355 ACTT
1 ACTT
8552359 GGGCCACGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (15 bp):
ACTTAACTTAACTTA
Found at i:8552416 original size:15 final size:15
Alignment explanation
Indices: 8552396--8552441 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8552386 TTAAAACAAT
8552396 TTTAAAATCAAAAAC
1 TTTAAAATCAAAAAC
*
8552411 TTTAAAATGC-AAAGC
1 TTTAAAAT-CAAAAAC
*
8552426 TTTAAAATAAAAAAC
1 TTTAAAATCAAAAAC
8552441 T
1 T
8552442 CTGATCTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 25 0.96
16 1 0.04
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (15 bp):
TTTAAAATCAAAAAC
Found at i:8553657 original size:13 final size:13
Alignment explanation
Indices: 8553639--8553663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8553629 TTTCAGAAAA
8553639 TTTATAAAATCAT
1 TTTATAAAATCAT
8553652 TTTATAAAATCA
1 TTTATAAAATCA
8553664 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:8559385 original size:17 final size:18
Alignment explanation
Indices: 8559359--8559407 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
8559349 AAAGGAAATA
*
8559359 AATATTTAAATATTATT-
1 AATATATAAATATTATTC
8559376 AATATATAAAT-TT-TTC
1 AATATATAAATATTATTC
8559392 AATA-ATAAAATATTAT
1 AATATAT-AAATATTAT
8559408 AAAGAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
15 4 0.15
16 10 0.37
17 12 0.44
18 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATATATAAATATTATTC
Found at i:8559443 original size:46 final size:47
Alignment explanation
Indices: 8559393--8559499 Score: 119
Period size: 46 Copynumber: 2.3 Consensus size: 47
8559383 AAATTTTTCA
* * * *
8559393 ATAATAAAATATTATAAAGAATATTACTTAA-TATTATTATTTGAAT
1 ATAATAAAATATAACAAAGAATATTACTTAATTAGTATTATTTAAAT
* *
8559439 ATAAT-AAATGTAACAAAGAATATTATTTAATTAGTATTATTTAAAT
1 ATAATAAAATATAACAAAGAATATTACTTAATTAGTATTATTTAAAT
*
8559485 TTAATGAAGAATATA
1 ATAAT-AA-AATATA
8559500 TTGTCTTTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
45 21 0.43
46 22 0.45
48 1 0.02
49 5 0.10
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (47 bp):
ATAATAAAATATAACAAAGAATATTACTTAATTAGTATTATTTAAAT
Found at i:8559581 original size:23 final size:23
Alignment explanation
Indices: 8559515--8559585 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
8559505 TTTTAATATT
*
8559515 AAATATTATTTAATTATAATAAA
1 AAATATTATTAAATTATAATAAA
** **
8559538 AGGT-TTAATTATCTTCA-AATAAA
1 AAATATT-ATTAAATT-ATAATAAA
8559561 AAATATTATTAAATTATAATAAA
1 AAATATTATTAAATTATAATAAA
8559584 AA
1 AA
8559586 TATGTTTGTA
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
22 3 0.09
23 29 0.83
24 3 0.09
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (23 bp):
AAATATTATTAAATTATAATAAA
Found at i:8559629 original size:22 final size:22
Alignment explanation
Indices: 8559559--8559629 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
8559549 TCTTCAAATA
* *
8559559 AAAAATATTATTAAATTATAAT
1 AAAAATATTATTTAATTATAGT
* *
8559581 AAAAATATGT-TTGT-ATTTTGGT
1 AAAAATAT-TATT-TAATTATAGT
*
8559603 GAAAATATTATTTAATTATAGT
1 AAAAATATTATTTAATTATAGT
8559625 AAAAA
1 AAAAA
8559630 GGTATTTTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
21 2 0.05
22 34 0.92
23 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.42
Consensus pattern (22 bp):
AAAAATATTATTTAATTATAGT
Found at i:8560566 original size:2 final size:2
Alignment explanation
Indices: 8560559--8560598 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
8560549 CATCCTGTAA
8560559 AT AT AT AT AT A- AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8560599 TAGTAGTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8566991 original size:17 final size:18
Alignment explanation
Indices: 8566969--8567004 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8566959 TCCATTTCTC
*
8566969 TTTCAA-ATTTACTGAGT
1 TTTCAACATTTACTAAGT
8566986 TTTCAACATTTACTAAGT
1 TTTCAACATTTACTAAGT
8567004 T
1 T
8567005 ATGGTGGCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (18 bp):
TTTCAACATTTACTAAGT
Found at i:8568428 original size:23 final size:23
Alignment explanation
Indices: 8568402--8568607 Score: 141
Period size: 23 Copynumber: 9.0 Consensus size: 23
8568392 ACTTGTCATT
*
8568402 TTTAAAAAATGTTACATGCCATG
1 TTTAAAAAATGTTACACGCCATG
* *
8568425 TTTAGAAAATGTTACACGTCATG
1 TTTAAAAAATGTTACACGCCATG
** * **
8568448 -TCCAAAAATGTTACAC-ACAAA
1 TTTAAAAAATGTTACACGCCATG
* * * * *
8568469 TTGAAAAATTATTACACACCTTG
1 TTTAAAAAATGTTACACGCCATG
* *
8568492 -TTCAAAAATGTTACACG-CAAG
1 TTTAAAAAATGTTACACGCCATG
* *
8568513 TTTAAAAATTGTTACACGCCTTG
1 TTTAAAAAATGTTACACGCCATG
* * *
8568536 TTCAAAAATTGTTACATGCCATG
1 TTTAAAAAATGTTACACGCCATG
* * * *
8568559 TTCATAACATGTTACATGCCATG
1 TTTAAAAAATGTTACACGCCATG
*
8568582 TTAAATAAAAATGTTACACGCCATG
1 TT-TA-AAAAATGTTACACGCCATG
8568607 T
1 T
8568608 GCTAACACAT
Statistics
Matches: 139, Mismatches: 38, Indels: 10
0.74 0.20 0.05
Matches are distributed among these distances:
21 4 0.03
22 52 0.37
23 65 0.47
24 1 0.01
25 17 0.12
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (23 bp):
TTTAAAAAATGTTACACGCCATG
Found at i:8568499 original size:44 final size:44
Alignment explanation
Indices: 8568450--8568551 Score: 150
Period size: 44 Copynumber: 2.3 Consensus size: 44
8568440 ACGTCATGTC
8568450 CAAAAATGTTACACACAAATTGAAAAATTATTACACACCTTGTT
1 CAAAAATGTTACACACAAATTGAAAAATTATTACACACCTTGTT
* * * * *
8568494 CAAAAATGTTACACGCAAGTTTAAAAATTGTTACACGCCTTGTT
1 CAAAAATGTTACACACAAATTGAAAAATTATTACACACCTTGTT
8568538 CAAAAATTGTTACA
1 CAAAAA-TGTTACA
8568552 TGCCATGTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
44 45 0.87
45 7 0.13
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (44 bp):
CAAAAATGTTACACACAAATTGAAAAATTATTACACACCTTGTT
Found at i:8568583 original size:12 final size:12
Alignment explanation
Indices: 8568545--8568584 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8568535 GTTCAAAAAT
8568545 TGTTACATGCCA
1 TGTTACATGCCA
**
8568557 TGTT-CATAACA
1 TGTTACATGCCA
8568568 TGTTACATGCCA
1 TGTTACATGCCA
8568580 TGTTA
1 TGTTA
8568585 AATAAAAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (12 bp):
TGTTACATGCCA
Found at i:8568921 original size:54 final size:54
Alignment explanation
Indices: 8568837--8568943 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
8568827 GACCACAACA
* * *
8568837 TGATGATGATGGTGCTAAACAGAGATTTGACAGAGCTCATACAGTTCAGAGAGC
1 TGATGATGATAGTGCTAAACAGAGAATTGACAGAGCTCATACAATTCAGAGAGC
* * * *
8568891 TGATGATGATAGTGCTTAACAGAGAATTGACAGAGTTGATACAATTTAGAGAG
1 TGATGATGATAGTGCTAAACAGAGAATTGACAGAGCTCATACAATTCAGAGAG
8568944 TTGAGAGAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (54 bp):
TGATGATGATAGTGCTAAACAGAGAATTGACAGAGCTCATACAATTCAGAGAGC
Found at i:8577413 original size:18 final size:18
Alignment explanation
Indices: 8577367--8577425 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
8577357 ACAAGTATAC
* * *
8577367 ATCCACTTTTGGTGGGTG
1 ATCCACTTATGATGGGTT
* *
8577385 ATCAACATATGATGGGTT
1 ATCCACTTATGATGGGTT
*
8577403 ATCCACTTATGATGGATT
1 ATCCACTTATGATGGGTT
8577421 ATCCA
1 ATCCA
8577426 TTTTTTAGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (18 bp):
ATCCACTTATGATGGGTT
Found at i:8577524 original size:51 final size:51
Alignment explanation
Indices: 8577465--8577598 Score: 191
Period size: 51 Copynumber: 2.6 Consensus size: 51
8577455 TACTTGTGGT
* *
8577465 AAATTATCCATCCACTTCTGGTAGCAAAATTA-TCTTTAGATTCTGATAGTA
1 AAATTATCCATCCACTTCTGGTGGTAAAATTATTC-TTAGATTCTGATAGTA
* *
8577516 AAATTATCCATCCACTTCTGGTGGTAATATTATTCTTAGATTCTGATGGTA
1 AAATTATCCATCCACTTCTGGTGGTAAAATTATTCTTAGATTCTGATAGTA
* *
8577567 AAATTAT-TATCCACTACTGGTGGTAAAATTAT
1 AAATTATCCATCCACTTCTGGTGGTAAAATTAT
8577599 AATTAGAATT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
50 22 0.29
51 51 0.68
52 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (51 bp):
AAATTATCCATCCACTTCTGGTGGTAAAATTATTCTTAGATTCTGATAGTA
Found at i:8577590 original size:25 final size:25
Alignment explanation
Indices: 8577449--8577598 Score: 90
Period size: 25 Copynumber: 6.0 Consensus size: 25
8577439 GATGACATTC
* * *
8577449 ATCCACTACTTGTGGT-AAATTATCC
1 ATCCACTTCTGGTGGTAAAATTAT-T
* *
8577474 ATCCACTTCTGGTAGCAAAATTATCT
1 ATCCACTTCTGGTGGTAAAATTAT-T
* ** * * *
8577500 TTAGA-TTCTGATAGTAAAATTATCC
1 ATCCACTTCTGGTGGTAAAATTAT-T
*
8577525 ATCCACTTCTGGTGGTAATATTATT
1 ATCCACTTCTGGTGGTAAAATTATT
* * * *
8577550 CT-TAGATTCTGATGGTAAAATTATT
1 ATCCA-CTTCTGGTGGTAAAATTATT
*
8577575 ATCCACTACTGGTGGTAAAATTAT
1 ATCCACTTCTGGTGGTAAAATTAT
8577599 AATTAGAATT
Statistics
Matches: 93, Mismatches: 28, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
24 1 0.01
25 66 0.71
26 26 0.28
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (25 bp):
ATCCACTTCTGGTGGTAAAATTATT
Found at i:8581023 original size:19 final size:20
Alignment explanation
Indices: 8580989--8581028 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8580979 TTCTGGGGTT
8580989 TTAAAATTCTCAATTTCGTC
1 TTAAAATTCTCAATTTCGTC
* *
8581009 TTAAAA-TCTCTATTTGGTC
1 TTAAAATTCTCAATTTCGTC
8581028 T
1 T
8581029 AGTTTGAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.47
Consensus pattern (20 bp):
TTAAAATTCTCAATTTCGTC
Found at i:8581238 original size:34 final size:34
Alignment explanation
Indices: 8581176--8581297 Score: 181
Period size: 34 Copynumber: 3.6 Consensus size: 34
8581166 CAGAAACTAC
* *
8581176 CAGCAAACAGCTCCAATTTTTTTGCACAAATTGG
1 CAGCAAACAGCTCAAATTTTTCTGCACAAATTGG
* * *
8581210 CAGCAAACAACTCAAACTTTTCTACACAAATTGG
1 CAGCAAACAGCTCAAATTTTTCTGCACAAATTGG
*
8581244 CATCAAACAGCTCAAATTTTTCTGCACAAATTGG
1 CAGCAAACAGCTCAAATTTTTCTGCACAAATTGG
*
8581278 TAGCAAACAGCTCAAATTTT
1 CAGCAAACAGCTCAAATTTT
8581298 CAGTAGCCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 77 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (34 bp):
CAGCAAACAGCTCAAATTTTTCTGCACAAATTGG
Found at i:8584795 original size:39 final size:39
Alignment explanation
Indices: 8584744--8584862 Score: 130
Period size: 39 Copynumber: 3.0 Consensus size: 39
8584734 GTACACGTAC
* *
8584744 ACGTTTAGTACACGTGTAATACGACACAACATGATTAAA
1 ACGTTTAATACACGTGTAATACGACACAACACGATTAAA
* *
8584783 ACGTTTAATACACGTGTAATACGACACGACACGATTAAC
1 ACGTTTAATACACGTGTAATACGACACAACACGATTAAA
* * * * *
8584822 ACATTTATTAAACGTATCAATATAAGACACAACACGATTAA
1 ACGTTTAATACACGTGT--A-ATACGACACAACACGATTAA
8584863 TGACACGTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 48 0.72
41 1 0.01
42 18 0.27
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (39 bp):
ACGTTTAATACACGTGTAATACGACACAACACGATTAAA
Found at i:8584976 original size:15 final size:15
Alignment explanation
Indices: 8584952--8584991 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
8584942 TTTAAAATCT
*
8584952 ATAATTATAAAAATA
1 ATAATAATAAAAATA
*
8584967 ATTATAATAAAAATA
1 ATAATAATAAAAATA
8584982 ATAATAATAA
1 ATAATAATAA
8584992 CATCAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATAATAAAAATA
Found at i:8585015 original size:15 final size:15
Alignment explanation
Indices: 8584969--8585024 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
8584959 TAAAAATAAT
*
8584969 TATAATAA-AAATAA
1 TATAATAACAATTAA
*
8584983 TAATAATAAC-ATCAAA
1 T-ATAATAACAAT-TAA
8584999 TATAATAACAATTAA
1 TATAATAACAATTAA
8585014 TATAAATAACA
1 TAT-AATAACA
8585025 TACATAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 1 0.03
15 21 0.62
16 12 0.35
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (15 bp):
TATAATAACAATTAA
Found at i:8593230 original size:21 final size:18
Alignment explanation
Indices: 8593194--8593228 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8593184 ATTGAAGAAG
8593194 AGAAGAAAGATTTGGTGA
1 AGAAGAAAGATTTGGTGA
*
8593212 AGAAGAAAGATCTGGTG
1 AGAAGAAAGATTTGGTG
8593229 GTCTAGTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.34, T:0.20
Consensus pattern (18 bp):
AGAAGAAAGATTTGGTGA
Found at i:8593258 original size:32 final size:32
Alignment explanation
Indices: 8593222--8593304 Score: 112
Period size: 32 Copynumber: 2.6 Consensus size: 32
8593212 AGAAGAAAGA
*
8593222 TCTGGTGGTCTAGTGGTGCCGTGGTGCCGTGG
1 TCTGGTGGTCTGGTGGTGCCGTGGTGCCGTGG
* * * *
8593254 TCTGGTGGTCTGGCGATGTCGTGGTGCTGTGG
1 TCTGGTGGTCTGGTGGTGCCGTGGTGCCGTGG
*
8593286 TCTAGTGGTCTGGTGGTGC
1 TCTGGTGGTCTGGTGGTGC
8593305 TCCGTGCATT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.04, C:0.17, G:0.46, T:0.34
Consensus pattern (32 bp):
TCTGGTGGTCTGGTGGTGCCGTGGTGCCGTGG
Found at i:8594283 original size:20 final size:20
Alignment explanation
Indices: 8594258--8594295 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8594248 TGAAAATTTA
*
8594258 TTGATTTGGTTAAGCATGAG
1 TTGATTTAGTTAAGCATGAG
8594278 TTGATTTAGTTAAGCATG
1 TTGATTTAGTTAAGCATG
8594296 TTCAAGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (20 bp):
TTGATTTAGTTAAGCATGAG
Found at i:8599453 original size:104 final size:104
Alignment explanation
Indices: 8599267--8599455 Score: 274
Period size: 104 Copynumber: 1.8 Consensus size: 104
8599257 TTTAGAGTTA
* *
8599267 TATCTTCGTATATATCTTCTGTTAAACCACATGCTTTTGTCTTAATGTTCATGCCATTTGGCCTT
1 TATCTTCGTATATATCTTCTGTTAAACCACATGCTTTTGTCTTAATGTTCATGCCATTTGGCATG
8599332 TGTTTATTATTTGAGTTTACATATCAAACATCTTTCTTG
66 TGTTTATTATTTGAGTTTACATATCAAACATCTTTCTTG
* * * * *
8599371 TATCTTCGTGTATATCTTCTGTTAAGCCACATGCTTTTGTGTTAATGCTT-ATGTCATTTGGTAT
1 TATCTTCGTATATATCTTCTGTTAAACCACATGCTTTTGTCTTAATG-TTCATGCCATTTGGCAT
*
8599435 GTGTTTTTTA-TTGTAGTTTAC
65 GTGTTTATTATTTG-AGTTTAC
8599456 GTATGAAATT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
103 3 0.04
104 70 0.93
105 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (104 bp):
TATCTTCGTATATATCTTCTGTTAAACCACATGCTTTTGTCTTAATGTTCATGCCATTTGGCATG
TGTTTATTATTTGAGTTTACATATCAAACATCTTTCTTG
Found at i:8603243 original size:36 final size:36
Alignment explanation
Indices: 8603203--8603271 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
8603193 CATCTTTCTT
* *
8603203 ATGATTATGCACTACATTTATTGATAGTTAATACTA
1 ATGATTATACACTACATTCATTGATAGTTAATACTA
* *
8603239 ATGATTATACATTACATTCATTGTTAGTTAATA
1 ATGATTATACACTACATTCATTGATAGTTAATA
8603272 ATAACGGTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (36 bp):
ATGATTATACACTACATTCATTGATAGTTAATACTA
Found at i:8604767 original size:28 final size:30
Alignment explanation
Indices: 8604724--8604785 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 30
8604714 ATGTCTATGG
*
8604724 GTAATTTTTCAGTTTT-T-GGGGCAAAAAT
1 GTAATTTTTCACTTTTATAGGGGCAAAAAT
* *
8604752 GTAATTTTTGACTTTTATAGGGGCAAAAGT
1 GTAATTTTTCACTTTTATAGGGGCAAAAAT
8604782 GTAA
1 GTAA
8604786 ATTTCAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 14 0.48
29 1 0.03
30 14 0.48
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (30 bp):
GTAATTTTTCACTTTTATAGGGGCAAAAAT
Found at i:8620472 original size:26 final size:26
Alignment explanation
Indices: 8620436--8620488 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8620426 GAAATGAGTC
8620436 AGTTTAATTTCATTATATAATTGAAT
1 AGTTTAATTTCATTATATAATTGAAT
8620462 AGTTTAATTTCATTATATAATTGAAT
1 AGTTTAATTTCATTATATAATTGAAT
8620488 A
1 A
8620489 TGTGTATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.49
Consensus pattern (26 bp):
AGTTTAATTTCATTATATAATTGAAT
Found at i:8621255 original size:69 final size:69
Alignment explanation
Indices: 8621144--8621285 Score: 275
Period size: 69 Copynumber: 2.1 Consensus size: 69
8621134 TTTCGTCGAA
*
8621144 AATTTCGTAGGTAAATCCATTGGCTTTGCTAACTGTGAGATCCGTGGGTACATTACCGATGGATT
1 AATTTCGTAGGTAAATCCATTGGCTTTGCTAACTATGAGATCCGTGGGTACATTACCGATGGATT
8621209 TACT
66 TACT
8621213 AATTTCGTAGGTAAATCCATTGGCTTTGCTAACTATGAGATCCGTGGGTACATTACCGATGGATT
1 AATTTCGTAGGTAAATCCATTGGCTTTGCTAACTATGAGATCCGTGGGTACATTACCGATGGATT
8621278 TACT
66 TACT
8621282 AATT
1 AATT
8621286 GCAAACTTCT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (69 bp):
AATTTCGTAGGTAAATCCATTGGCTTTGCTAACTATGAGATCCGTGGGTACATTACCGATGGATT
TACT
Found at i:8622647 original size:24 final size:24
Alignment explanation
Indices: 8622620--8622668 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
8622610 CATAACAAAA
8622620 TGATCATCTATGGATATGACGACT
1 TGATCATCTATGGATATGACGACT
*
8622644 TGATCATCTATGGATATGATGACT
1 TGATCATCTATGGATATGACGACT
8622668 T
1 T
8622669 ACTTCTTTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (24 bp):
TGATCATCTATGGATATGACGACT
Found at i:8625346 original size:72 final size:72
Alignment explanation
Indices: 8625080--8625339 Score: 341
Period size: 72 Copynumber: 3.6 Consensus size: 72
8625070 TGAGCTATTA
*
8625080 GATCTAAGTCTTACAAATCTCTCTGGAGCATTGCCTAATTCCATTGGCAATTTAGTTTCATTGAA
1 GATCTAAGTCTTACGAATCTCTCTGGAGCATTGCCTAATTCCATTGGCAATTTAGTTTCATTGAA
8625145 ACATTTG
66 ACATTTG
*
8625152 GATCTAAG--TTAC-ACATCCCTCTCTGGAGCATTGCCTAATTCCATTGGTAATTTAGTTTCATT
1 GATCTAAGTCTTACGA-AT--CTCTCTGGAGCATTGCCTAATTCCATTGGCAATTTAGTTTCATT
*
8625214 GAAAGATTTG
63 GAAACATTTG
** ***
8625224 GATCTACA-TCAGACGTCCCTCTCTGGAGCATTGCCTAATTCCATTGGCAATTTAGTTTCATTGG
1 GATCTA-AGTCTTACGAATCTCTCTGGAGCATTGCCTAATTCCATTGGCAATTTAGTTTCATT-G
8625288 AAA-ATTTG
64 AAACATTTG
* * *
8625296 GATCTAAGTTTTACGAATCTCTCTGGAGCATTGCGTAATCCCAT
1 GATCTAAGTCTTACGAATCTCTCTGGAGCATTGCCTAATTCCAT
8625340 CCGCAATCTA
Statistics
Matches: 163, Mismatches: 16, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
69 1 0.01
70 6 0.04
71 1 0.01
72 148 0.91
73 5 0.03
74 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (72 bp):
GATCTAAGTCTTACGAATCTCTCTGGAGCATTGCCTAATTCCATTGGCAATTTAGTTTCATTGAA
ACATTTG
Found at i:8627808 original size:10 final size:10
Alignment explanation
Indices: 8627789--8627818 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8627779 AATATGCGCG
*
8627789 CTTTTCTTTT
1 CTTTTTTTTT
8627799 CTTTTTTTTT
1 CTTTTTTTTT
8627809 CTTTTTTTTT
1 CTTTTTTTTT
8627819 AACAAAGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:8631625 original size:93 final size:92
Alignment explanation
Indices: 8631511--8631904 Score: 446
Period size: 93 Copynumber: 4.2 Consensus size: 92
8631501 AGGTCAGAGA
* * * ***
8631511 CTAACTATTTGATATATATTCAATATTCATCCTTTAATACATGTCACATTTTTGGCATATACATA
1 CTAACTGTTTGATATATATTCAACATTCA-CCTTTAATACACGTCACATTTTCAACATATACATA
* * *
8631576 AACTTTGTTGGCATGTAAGGTTCAAAGG
65 GACTTTATTGGCATGTAAGGTCCAAAGG
* * *
8631604 CTAATTGTTTGTTATATATTCAACATTCACCATTAAGTACACGTCACATTTTCAACATATACATA
1 CTAACTGTTTGATATATATTCAACATTCACCTTTAA-TACACGTCACATTTTCAACATATACATA
* *
8631669 GACTTTATTGGCATGTAAAGTCCAGAGG
65 GACTTTATTGGCATGTAAGGTCCAAAGG
* * * * * *
8631697 CTAGCTGTTTGATATATATTCAACATACACCATTAAATATATGTCACATTTTCGACATATACATA
1 CTAACTGTTTGATATATATTCAACATTCACC-TTTAATACACGTCACATTTTCAACATATACATA
* * * *
8631762 TAGTTTATTTGGCATGTAAGGTCTAGAGG
65 GACTTTA-TTGGCATGTAAGGTCCAAAGG
* * * *
8631791 CTAACTGCTTGATATATATATTCAACATTCACCCTTACATACACATCACATTTTCAGCATATACA
1 CTAACTGTTTG--ATATATATTCAACATTCACCTTTA-ATACACGTCACATTTTCAACATATACA
*
8631856 TAGACTTTATTGGCATGTAAGGTCCAAAGA
63 TAGACTTTATTGGCATGTAAGGTCCAAAGG
* *
8631886 CTAATTCTTTGATATATAT
1 CTAACTGTTTGATATATAT
8631905 ATATATATAT
Statistics
Matches: 250, Mismatches: 45, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
92 6 0.02
93 137 0.55
94 31 0.12
95 28 0.11
96 48 0.19
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.37
Consensus pattern (92 bp):
CTAACTGTTTGATATATATTCAACATTCACCTTTAATACACGTCACATTTTCAACATATACATAG
ACTTTATTGGCATGTAAGGTCCAAAGG
Found at i:8631855 original size:189 final size:186
Alignment explanation
Indices: 8631508--8631904 Score: 521
Period size: 189 Copynumber: 2.1 Consensus size: 186
8631498 ATAAGGTCAG
* * * * * *
8631508 AGACTAACTATTTGATATATATTCAATATTCATCCTTTAATACATGTCACATTTTTGGCATATAC
1 AGACTAACTCTTTGATATATATTCAACATACATCCTTAAATACATGTCACATTTTCGACATATAC
* *
8631573 ATAAACTTTGTTGGCATGTAAGGTTCAAAGGCTAATTGTTTGTTATATATTCAACATTCACCATT
66 ATAAACTTTGTTGGCATGTAAGGTTCAAAGGCTAACTGCTTGTTATATATTCAACATTCACCATT
* *
8631638 AAGTACACGTCACATTTTCAACATATACATAGACTTTATTGGCATGTAAAGTCCAG
131 AAGTACACATCACATTTTCAACATATACATAGACTTTATTGGCATGTAAAGTCCAA
* * * *
8631694 AGGCTAGCTGTTTGATATATATTCAACATACA-CCATTAAATATATGTCACATTTTCGACATATA
1 AGACTAACTCTTTGATATATATTCAACATACATCC-TTAAATACATGTCACATTTTCGACATATA
* * * *
8631758 CATATAGTTTATTTGGCATGTAAGG-TCTAGAGGCTAACTGCTTGATATATATATTCAACATTCA
65 CATAAACTTT-GTTGGCATGTAAGGTTC-AAAGGCTAACTGCTTG-T-TATATATTCAACATTCA
* * *
8631822 CCCTTACA-TACACATCACATTTTCAGCATATACATAGACTTTATTGGCATGTAAGGTCCAA
126 CCATTA-AGTACACATCACATTTTCAACATATACATAGACTTTATTGGCATGTAAAGTCCAA
*
8631883 AGACTAATTCTTTGATATATAT
1 AGACTAACTCTTTGATATATAT
8631905 ATATATATAT
Statistics
Matches: 181, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
185 2 0.01
186 62 0.34
187 26 0.14
188 1 0.01
189 89 0.49
190 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.37
Consensus pattern (186 bp):
AGACTAACTCTTTGATATATATTCAACATACATCCTTAAATACATGTCACATTTTCGACATATAC
ATAAACTTTGTTGGCATGTAAGGTTCAAAGGCTAACTGCTTGTTATATATTCAACATTCACCATT
AAGTACACATCACATTTTCAACATATACATAGACTTTATTGGCATGTAAAGTCCAA
Found at i:8631904 original size:2 final size:2
Alignment explanation
Indices: 8631897--8631922 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8631887 TAATTCTTTG
8631897 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8631923 TCAACATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8640870 original size:22 final size:22
Alignment explanation
Indices: 8640845--8640890 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8640835 TTGGTTAGTA
8640845 ATTTGTTGCTGT-TTTATGGGAG
1 ATTTGTTGCT-TATTTATGGGAG
*
8640867 ATTTGTTGCTTATTTGTGGGAG
1 ATTTGTTGCTTATTTATGGGAG
8640889 AT
1 AT
8640891 GATGGTGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.15, C:0.04, G:0.30, T:0.50
Consensus pattern (22 bp):
ATTTGTTGCTTATTTATGGGAG
Found at i:8643132 original size:19 final size:19
Alignment explanation
Indices: 8643104--8643141 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8643094 CCATTTGACT
*
8643104 TATTGGAGTATGATTTGAG
1 TATTGAAGTATGATTTGAG
8643123 TATTGAAGTATGATTTGAG
1 TATTGAAGTATGATTTGAG
8643142 GTTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGAAGTATGATTTGAG
Found at i:8651585 original size:11 final size:11
Alignment explanation
Indices: 8651568--8651610 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
8651558 TCAGAGTTTT
8651568 TTGGTTTAAAG
1 TTGGTTTAAAG
*
8651579 CTGGTTTAAAG
1 TTGGTTTAAAG
*
8651590 TTGTTTTAAAG
1 TTGGTTTAAAG
*
8651601 TTGTTTTAAA
1 TTGGTTTAAA
8651611 ATTTACATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (11 bp):
TTGGTTTAAAG
Found at i:8651688 original size:5 final size:5
Alignment explanation
Indices: 8651641--8651684 Score: 70
Period size: 5 Copynumber: 8.8 Consensus size: 5
8651631 TCTAAGTCTT
* *
8651641 GTTAA GTTAA GATAA GTTAA GTTAA GTTAA GTTAA GTTAG GTTA
1 GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTA
8651685 GGTTGAACAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (5 bp):
GTTAA
Found at i:8656194 original size:116 final size:116
Alignment explanation
Indices: 8655990--8656222 Score: 430
Period size: 116 Copynumber: 2.0 Consensus size: 116
8655980 AACACATGGA
8655990 TTTTATCCAATATTATCATGGATAATTGAAGGAATTTAAGTGGTGGAGAGAGAAAGCTTAATAGT
1 TTTTATCCAATATTATCATGGATAATTGAAGGAATTTAAGTGGTGGAGAGAGAAAGCTTAATAGT
* *
8656055 TAAGAAATTAAAAACGGGCCAATGACATTATGCCACATGTCATGCCTTTAT
66 TAAGAAATTAAAAACGGGCCAATGACATGATGCCACATGTCATGCCTATAT
8656106 TTTTATCCAATATTATCATGGATAATTGAAGGAATTTAAGTGGTGGAGAGAGAAAGCTTAATAGT
1 TTTTATCCAATATTATCATGGATAATTGAAGGAATTTAAGTGGTGGAGAGAGAAAGCTTAATAGT
* *
8656171 TAAGAAATTAAAAATGGGCCAATGACATGATGCCACGTGTCATGCCTATAT
66 TAAGAAATTAAAAACGGGCCAATGACATGATGCCACATGTCATGCCTATAT
8656222 T
1 T
8656223 AATTTATTAT
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 113 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (116 bp):
TTTTATCCAATATTATCATGGATAATTGAAGGAATTTAAGTGGTGGAGAGAGAAAGCTTAATAGT
TAAGAAATTAAAAACGGGCCAATGACATGATGCCACATGTCATGCCTATAT
Found at i:8664621 original size:21 final size:20
Alignment explanation
Indices: 8664596--8664655 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
8664586 AGATGTCTAA
*
8664596 AATAATTATTTGAAATGAAAT
1 AATAATTATTTG-AATAAAAT
* *
8664617 TATAATTGTTTGAATAAAAT
1 AATAATTATTTGAATAAAAT
8664637 AATAA-TATTT-AATAAAAT
1 AATAATTATTTGAATAAAAT
8664655 A
1 A
8664656 TTCTATTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
18 9 0.26
19 4 0.12
20 11 0.32
21 10 0.29
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (20 bp):
AATAATTATTTGAATAAAAT
Found at i:8667963 original size:19 final size:19
Alignment explanation
Indices: 8667939--8667985 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
8667929 CTAGCAATTA
8667939 TAATTAATAAAT-TATTTAT
1 TAATT-ATAAATGTATTTAT
*
8667958 TAATTATAATTGTATTTAT
1 TAATTATAAATGTATTTAT
*
8667977 TAAGTATAA
1 TAATTATAA
8667986 TTGTGGATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
TAATTATAAATGTATTTAT
Found at i:8667986 original size:19 final size:19
Alignment explanation
Indices: 8667951--8667989 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8667941 ATTAATAAAT
*
8667951 TATTTATTAATTATAATTG
1 TATTTATTAAGTATAATTG
8667970 TATTTATTAAGTATAATTG
1 TATTTATTAAGTATAATTG
8667989 T
1 T
8667990 GGATGACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
TATTTATTAAGTATAATTG
Found at i:8694869 original size:23 final size:23
Alignment explanation
Indices: 8694839--8694925 Score: 111
Period size: 23 Copynumber: 3.8 Consensus size: 23
8694829 CACAATAAGT
*
8694839 TAGTCACGTAATTCCATATCAAC
1 TAGTCACGCAATTCCATATCAAC
** *
8694862 TAGTCACGTGATTCTATATCAAC
1 TAGTCACGCAATTCCATATCAAC
* *
8694885 TAGTCACGCGATTCAATATCAAC
1 TAGTCACGCAATTCCATATCAAC
*
8694908 TAGTCACCCAATTCCATA
1 TAGTCACGCAATTCCATA
8694926 ATAAGTGGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.30
Consensus pattern (23 bp):
TAGTCACGCAATTCCATATCAAC
Found at i:8695085 original size:69 final size:69
Alignment explanation
Indices: 8694918--8695089 Score: 166
Period size: 69 Copynumber: 2.5 Consensus size: 69
8694908 TAGTCACCCA
* * * * *
8694918 ATTCCATAATAAGTGGTAATGCCAATCCATATATACTACTCACGCGAGTTAATATCAACTAGTAA
1 ATTCCATAATAACTAGTAATGCCAATCCATATATACTACTCACGCAAGTTAATATCAAATACTAA
* **
8694983 TGTG
66 CGCC
* * ** * * * * *
8694987 ATTCCATAATAACCAGTGATGGGACTCCATATTTGCTACTCACGCAATTTTATAAT-AAATACTA
1 ATTCCATAATAACTAGTAATGCCAATCCATATATACTACTCACGCAAGTTAAT-ATCAAATACTA
8695051 ACGCC
65 ACGCC
*
8695056 ATTCCATAATAACTAGTAATGCCAGTCCATATAT
1 ATTCCATAATAACTAGTAATGCCAATCCATATAT
8695090 TACTCATGTG
Statistics
Matches: 79, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
69 77 0.97
70 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (69 bp):
ATTCCATAATAACTAGTAATGCCAATCCATATATACTACTCACGCAAGTTAATATCAAATACTAA
CGCC
Found at i:8695162 original size:23 final size:23
Alignment explanation
Indices: 8694849--8695162 Score: 70
Period size: 23 Copynumber: 13.7 Consensus size: 23
8694839 TAGTCACGTA
* *
8694849 ATTCCAT-ATCAACTAGTCACGTG
1 ATTCCATAAT-AACTAGTCATGCG
* *
8694872 ATTCTAT-ATCAACTAGTCACGCG
1 ATTCCATAAT-AACTAGTCATGCG
* ** *
8694895 ATTCAAT-ATCAACTAGTCACCCA
1 ATTCCATAAT-AACTAGTCATGCG
* * * *
8694918 ATTCCATAATAAGTGGTAATGCC
1 ATTCCATAATAACTAGTCATGCG
* * *
8694941 AATCCAT-ATATACTACTCACGCG
1 ATTCCATAATA-ACTAGTCATGCG
* * *
8694964 AGTT-AAT-ATCAACTAGTAATGTG
1 A-TTCCATAAT-AACTAGTCATGCG
* * *
8694987 ATTCCATAATAACCAGTGATGGG
1 ATTCCATAATAACTAGTCATGCG
* * ** * * *
8695010 ACTCCATATTTGCTACTCACGCA
1 ATTCCATAATAACTAGTCATGCG
** * * * * *
8695033 ATTTTATAATAAATACTAACGCC
1 ATTCCATAATAACTAGTCATGCG
* *
8695056 ATTCCATAATAACTAGTAATGCC
1 ATTCCATAATAACTAGTCATGCG
* * * *
8695079 AGTCCAT-AT-ATTACTCATGTG
1 ATTCCATAATAACTAGTCATGCG
* * **
8695100 ACTCAAT-ATCAACTAGTCACACG
1 ATTCCATAAT-AACTAGTCATGCG
* *
8695123 ATTCCACAAAAACTAGTCATGCG
1 ATTCCATAATAACTAGTCATGCG
*
8695146 ATTCCATAATAATTAGT
1 ATTCCATAATAACTAGT
8695163 AACGCCACTC
Statistics
Matches: 207, Mismatches: 75, Indels: 18
0.69 0.25 0.06
Matches are distributed among these distances:
21 14 0.07
22 7 0.03
23 179 0.86
24 7 0.03
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (23 bp):
ATTCCATAATAACTAGTCATGCG
Found at i:8695266 original size:23 final size:23
Alignment explanation
Indices: 8695240--8695312 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
8695230 GGCTCATGCA
*
8695240 ATTCCATATTTACTAGTCAC-TCG
1 ATTCCATATTAACTAGTCACGT-G
* ** *
8695263 ATTCCAAATCGATTAGTCACGTG
1 ATTCCATATTAACTAGTCACGTG
*
8695286 ATTCCATATTAACTAATCACGTG
1 ATTCCATATTAACTAGTCACGTG
8695309 ATTC
1 ATTC
8695313 AAAAATTAGC
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
23 39 0.98
24 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (23 bp):
ATTCCATATTAACTAGTCACGTG
Found at i:8695674 original size:26 final size:26
Alignment explanation
Indices: 8695638--8695700 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
8695628 TCTTTTTTGT
*
8695638 TAAATAATACAAAAAAGAAAAATATG
1 TAAATGATACAAAAAAGAAAAATATG
* *
8695664 TAAATGATACAACAAAGAACAATATG
1 TAAATGATACAAAAAAGAAAAATATG
* *
8695690 GACATGATACA
1 TAAATGATACA
8695701 GAACAATGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.60, C:0.10, G:0.11, T:0.19
Consensus pattern (26 bp):
TAAATGATACAAAAAAGAAAAATATG
Found at i:8707683 original size:11 final size:12
Alignment explanation
Indices: 8707657--8707685 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8707647 TAATGAATAC
8707657 TTTTTCTACTAT
1 TTTTTCTACTAT
8707669 TTTTTCTACTAT
1 TTTTTCTACTAT
8707681 TTTTT
1 TTTTT
8707686 ATTCTGTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTCTACTAT
Found at i:8709575 original size:40 final size:40
Alignment explanation
Indices: 8709531--8709697 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
8709521 AGCTTGACTG
8709531 GGTAGTTGACATGGTCCTACCTTTTGATTTGGTTTTTGTT
1 GGTAGTTGACATGGTCCTACCTTTTGATTTGGTTTTTGTT
* * *
8709571 GGTAGTTGACATGGTCTTTCCTTTTGATTTGGTTTTGGTT
1 GGTAGTTGACATGGTCCTACCTTTTGATTTGGTTTTTGTT
* *** *
8709611 GGTAGTTGACATGGTCCTACCCTTTTGAGATAACTTTAT-TT
1 GGTAGTTGACATGGTCCTA-CCTTTTGA-TTTGGTTTTTGTT
*
8709652 GGTAGTTGACATGGTCCTA-CTCTTGATTTGG-TTTTG-T
1 GGTAGTTGACATGGTCCTACCTTTTGATTTGGTTTTTGTT
8709689 GGTAGTTGA
1 GGTAGTTGA
8709698 TACGATTCTA
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
37 13 0.12
38 1 0.01
39 6 0.06
40 54 0.50
41 29 0.27
42 4 0.04
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.47
Consensus pattern (40 bp):
GGTAGTTGACATGGTCCTACCTTTTGATTTGGTTTTTGTT
Found at i:8712830 original size:2 final size:2
Alignment explanation
Indices: 8712823--8712855 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8712813 ATTTGCATCA
8712823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8712856 CTACCATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8712942 original size:2 final size:2
Alignment explanation
Indices: 8712935--8712969 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8712925 ATGTGCACCN
8712935 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8712970 CCCATCATCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8716263 original size:28 final size:28
Alignment explanation
Indices: 8716231--8716316 Score: 127
Period size: 28 Copynumber: 3.1 Consensus size: 28
8716221 TCTAGGACAA
*
8716231 CAATATTATTAAGGATGTTTGTGTTCTT
1 CAATATTATTATGGATGTTTGTGTTCTT
*
8716259 CAATATTATTATGAATGTTTGTGTTCTT
1 CAATATTATTATGGATGTTTGTGTTCTT
* * *
8716287 GAATGTTATTATGGATTTTTGTGTTCTT
1 CAATATTATTATGGATGTTTGTGTTCTT
8716315 CA
1 CA
8716317 TTAATAACTT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.23, C:0.07, G:0.17, T:0.52
Consensus pattern (28 bp):
CAATATTATTATGGATGTTTGTGTTCTT
Found at i:8721493 original size:19 final size:20
Alignment explanation
Indices: 8721466--8721511 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8721456 ATGAGACAAG
*
8721466 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
8721485 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
8721504 ATAATATT
1 ATAATATT
8721512 AATATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:8722161 original size:2 final size:2
Alignment explanation
Indices: 8722154--8722204 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
8722144 NNNNNNNNNN
8722154 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8722196 AT AT AT AT A
1 AT AT AT AT A
8722205 ATTGAATCAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8722826 original size:27 final size:27
Alignment explanation
Indices: 8722776--8722850 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
8722766 AAAAGAAAAA
* *
8722776 AACAAGAAAGGAAAATGGGCATGGCCC
1 AACAAGAAAGAAAAATGGACATGGCCC
* * *
8722803 AACAAGCAAGAAAAATGGATATGGTCC
1 AACAAGAAAGAAAAATGGACATGGCCC
* *
8722830 AA-TA-AAGGAAAAATGGACATG
1 AACAAGAAAGAAAAATGGACATG
8722851 ATCCAATAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 14 0.36
26 1 0.03
27 24 0.62
ACGTcount: A:0.49, C:0.13, G:0.25, T:0.12
Consensus pattern (27 bp):
AACAAGAAAGAAAAATGGACATGGCCC
Found at i:8722846 original size:25 final size:25
Alignment explanation
Indices: 8722812--8722882 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
8722802 CAACAAGCAA
*
8722812 GAAAAATGGATATGGTCCAATAAAG
1 GAAAAATGGACATGGTCCAATAAAG
* *
8722837 GAAAAATGGACATGATCCAATAAAT
1 GAAAAATGGACATGGTCCAATAAAG
* *
8722862 GAAGAATGGGCATGGTCCAAT
1 GAAAAATGGACATGGTCCAAT
8722883 CAAAAAGAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.20
Consensus pattern (25 bp):
GAAAAATGGACATGGTCCAATAAAG
Found at i:8722894 original size:25 final size:25
Alignment explanation
Indices: 8722810--8722896 Score: 83
Period size: 25 Copynumber: 3.5 Consensus size: 25
8722800 CCCAACAAGC
**
8722810 AAGAA-AAATGGATATGGTCCAATA
1 AAGAAGAAATGGGCATGGTCCAATA
* *
8722834 AAGGAA-AAATGGACATGATCCAATA
1 AA-GAAGAAATGGGCATGGTCCAATA
8722859 AATGAAG-AATGGGCATGGTCCAATCA
1 AA-GAAGAAATGGGCATGGTCCAAT-A
8722885 AA-AAGAAATGGG
1 AAGAAGAAATGGG
8722897 AGAAGTCCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.09
25 46 0.85
26 3 0.06
ACGTcount: A:0.48, C:0.10, G:0.24, T:0.17
Consensus pattern (25 bp):
AAGAAGAAATGGGCATGGTCCAATA
Found at i:8724564 original size:70 final size:70
Alignment explanation
Indices: 8724451--8724588 Score: 249
Period size: 70 Copynumber: 2.0 Consensus size: 70
8724441 ATTACAGTTG
*
8724451 TAAAGCCCGACCTTATAAAATACTATTCATGACATACATGTGATGATAGCATGATTTCATGCTAG
1 TAAAGCCCGACCTTATAAAATACTATTCATGACATACATGTGATGATAGCATGATTGCATGCTAG
8724516 GAGTA
66 GAGTA
* *
8724521 TAAAGCTCGACCTTATAAAATACTATTCATGACTTACATGTGATGATAGCATGATTGCATGCTAG
1 TAAAGCCCGACCTTATAAAATACTATTCATGACATACATGTGATGATAGCATGATTGCATGCTAG
8724586 GAG
66 GAG
8724589 AGTCCCGAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (70 bp):
TAAAGCCCGACCTTATAAAATACTATTCATGACATACATGTGATGATAGCATGATTGCATGCTAG
GAGTA
Found at i:8731838 original size:20 final size:21
Alignment explanation
Indices: 8731815--8731856 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
8731805 AATAAAATCT
8731815 ACATAACAAAAAAAAGA-AGA
1 ACATAACAAAAAAAAGATAGA
* *
8731835 ACATAGCAAATAAAAGATAGA
1 ACATAACAAAAAAAAGATAGA
8731856 A
1 A
8731857 TGCACATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.69, C:0.10, G:0.12, T:0.10
Consensus pattern (21 bp):
ACATAACAAAAAAAAGATAGA
Found at i:8732186 original size:28 final size:29
Alignment explanation
Indices: 8732145--8732200 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 29
8732135 TAAGTTATAG
*
8732145 AAAAGAGAGTAAAATAAAGATGA-AAAGAAC
1 AAAAGAGAG-AAAAAAAAGA-GAGAAAGAAC
8732175 AAAAGAGA-AAAAAAAAGAGAGAAAGA
1 AAAAGAGAGAAAAAAAAGAGAGAAAGA
8732201 GATGTGGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.08
28 14 0.58
30 8 0.33
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (29 bp):
AAAAGAGAGAAAAAAAAGAGAGAAAGAAC
Found at i:8734765 original size:26 final size:26
Alignment explanation
Indices: 8734706--8734765 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
8734696 ACCATATACC
*
8734706 CATCATCAACATGCACACCACCCCAT
1 CATCATCTACATGCACACCACCCCAT
* **
8734732 CATCATCTTCATGCACACCTTCCCAT
1 CATCATCTACATGCACACCACCCCAT
8734758 CATCATCT
1 CATCATCT
8734766 CATATGCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.43, G:0.03, T:0.25
Consensus pattern (26 bp):
CATCATCTACATGCACACCACCCCAT
Found at i:8734853 original size:42 final size:42
Alignment explanation
Indices: 8734784--8734875 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
8734774 ACGGCTTATG
* *
8734784 CGCATATAGTCGGGTCAGCAACGGCTTATGTGCACTCCCACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
*
8734826 CGCACATAGCCGGGTCAGTAACGGCTTATGTGCACTCCCACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
8734868 CGCACATA
1 CGCACATA
8734876 ACCGNNNNNN
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.22
Consensus pattern (42 bp):
CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
Found at i:8738591 original size:27 final size:28
Alignment explanation
Indices: 8738561--8738614 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
8738551 TCGGAGTATA
8738561 GGGGCAAAATC-GT-AATTTTTTCGTCCT
1 GGGGCAAAATCGGTAAATTTTTT-GTCCT
*
8738588 GGGGCCAAATCGGTAAATTTTTTGTCC
1 GGGGCAAAATCGGTAAATTTTTTGTCC
8738615 CAACACTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 10 0.42
28 6 0.25
29 8 0.33
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (28 bp):
GGGGCAAAATCGGTAAATTTTTTGTCCT
Found at i:8738608 original size:28 final size:27
Alignment explanation
Indices: 8738561--8738614 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
8738551 TCGGAGTATA
*
8738561 GGGGCAAAATCGTAATTTTTTCGTCCT
1 GGGGCAAAATCGTAAATTTTTCGTCCT
* *
8738588 GGGGCCAAATCGGTAAATTTTTTGTCC
1 GGGGCAAAATC-GTAAATTTTTCGTCC
8738615 CAACACTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (27 bp):
GGGGCAAAATCGTAAATTTTTCGTCCT
Found at i:8739938 original size:71 final size:71
Alignment explanation
Indices: 8739861--8740023 Score: 299
Period size: 71 Copynumber: 2.3 Consensus size: 71
8739851 GTAACCATGT
8739861 GTGTGCACGATGTGGGGGGATACACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
1 GTGTGCACGATGTGGGGGGATACACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
8739926 GTGCCA
66 GTGCCA
* *
8739932 GTGTGCACGATGTGGGGGGATGCACATGCCGGTGATGATGGTGGCGTGAGAGATGGATGATGATA
1 GTGTGCACGATGTGGGGGGATACACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
*
8739997 GTGCCC
66 GTGCCA
8740003 GTGTGCACGATGTGGGGGGAT
1 GTGTGCACGATGTGGGGGGAT
8740024 TTACACGATG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 89 1.00
ACGTcount: A:0.21, C:0.13, G:0.44, T:0.23
Consensus pattern (71 bp):
GTGTGCACGATGTGGGGGGATACACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
GTGCCA
Found at i:8741287 original size:171 final size:173
Alignment explanation
Indices: 8740988--8741610 Score: 732
Period size: 171 Copynumber: 3.6 Consensus size: 173
8740978 ATGACAACTT
* * *
8740988 ATGCCTTC-AGAAGCCTTATTAATCACTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTT
1 ATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
* * ** * * * *
8741052 TAATTTTTTTACA-TTTTCGACCAAGAA-AGATTATAATTAAATGTTTGCCTCA-AGGAATATGA
65 GAATTTTTTTACATTTTTAGATTAA-AACAGATTATAATTGAATGTTTGCCTTAGAGAAACATGA
*
8741114 AGCGAAAGCCATCAATTGACAAAAAAAGTCCATTTATAGTCACTC
129 AGCGAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * *
8741159 ATGCCTTTGAAAGTCTTATTACTCTG-TTTAAATGGTTTTATAATCTCGTTATTGATTTTAAGTT
1 ATGCCTTCGAAAGCCTTATTACTC-GCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
8741223 GAATTTTTTTACATTTTTAG-TTAAAACAGATTATAATTGAATGTTTGCCTTAGA-AAACATGAA
65 GAATTTTTTTACATTTTTAGATTAAAACAGATTATAATTGAATGTTTGCCTTAGAGAAACATGAA
* * **
8741286 GCGAAAGCCGTCGATTGGTAAGAAAAGTCCATTTATAGTCACTC
130 GCGAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTC
*
8741330 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTG
1 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
* * * * * *
8741395 AATTTTTCTACATTTTT-GTTTAAAAC--A-TATGATTG-TTAGATTTGCGTCTCGAGAAACATG
66 AATTTTTTTACATTTTTAGATTAAAACAGATTATAATTGAAT-G-TTTGCCT-TAGAGAAACATG
* * * *
8741455 AAGCAAAAGCCATCCATTGAGAAGAAAAGTTCATTTATAGTCACTC
128 AAGCGAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * *
8741501 ATGTCTTCAAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCACATTATTGATTTTAAGTTG
1 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
* * * * *
8741566 ATTTTTTTTATATTTTTA-TTTAAAGCAAATTATAATTGAATGTTT
66 AATTTTTTTACATTTTTAGATTAAAACAGATTATAATTGAATGTTT
8741611 ACCTCGGGAA
Statistics
Matches: 388, Mismatches: 48, Indels: 30
0.83 0.10 0.06
Matches are distributed among these distances:
167 1 0.00
168 8 0.02
169 7 0.02
170 7 0.02
171 345 0.89
172 7 0.02
173 4 0.01
174 8 0.02
175 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (173 bp):
ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
AATTTTTTTACATTTTTAGATTAAAACAGATTATAATTGAATGTTTGCCTTAGAGAAACATGAAG
CGAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTC
Found at i:8747395 original size:170 final size:170
Alignment explanation
Indices: 8747113--8747492 Score: 525
Period size: 170 Copynumber: 2.2 Consensus size: 170
8747103 NNNNNNNNNN
* *
8747113 ATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTGCCTCGGGA
1 ATTTTAAGTTGAA-TTTTTTACATTTTTGGTTAAAACAGATGATAATTGAATGTTTGCCTCGGGA
*
8747178 AATATGAAGCGAAAGCCATCAATTGACAAGAAAAGTCTATTTATAGTCACTCACGCCTTCGAAA-
65 AATATGAAGCGAAAGCCATCAATTGACAAGAAAAGTCTATTTATAGTCACTCACGCCTTCAAAAG
*
8747242 CCTCATTACTCGGTTTAAATGGTTTTATAATCTCATAATTT
130 CCTCATTACTCGGTTTAAATGGTTTTATAATCTCATAATTG
* ** *
8747283 ATTTTAAGTTGAATTTTTCTACATTTTTGGTTAAAACATATGATTGTT-AGAT-TTGTGTCTCGG
1 ATTTTAAGTTGAATTTTT-TACATTTTTGGTTAAAACAGATGATAATTGA-ATGTT-TGCCTCGG
* * * *
8747346 GAAATATGAAGCGAAAGCCATCCATTGAGAAGAAAAAT-TCATTTATAGTCACTCATGCCTTCAA
63 GAAATATGAAGCGAAAGCCATCAATTGACAAGAAAAGTCT-ATTTATAGTCACTCACGCCTTCAA
** *
8747410 AAGCCTTGTTACTCGGTTTAAATGGTTTTATAATCTCATTATTG
127 AAGCCTCATTACTCGGTTTAAATGGTTTTATAATCTCATAATTG
* *
8747454 ATTTTAAGTTGAATTGTTTTGCATTTGTGGTTAAAACAG
1 ATTTTAAGTTGAATT-TTTTACATTTTTGGTTAAAACAG
8747493 TTTTTATGTA
Statistics
Matches: 186, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
169 9 0.05
170 105 0.56
171 69 0.37
172 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (170 bp):
ATTTTAAGTTGAATTTTTTACATTTTTGGTTAAAACAGATGATAATTGAATGTTTGCCTCGGGAA
ATATGAAGCGAAAGCCATCAATTGACAAGAAAAGTCTATTTATAGTCACTCACGCCTTCAAAAGC
CTCATTACTCGGTTTAAATGGTTTTATAATCTCATAATTG
Found at i:8748229 original size:21 final size:22
Alignment explanation
Indices: 8748204--8748244 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
8748194 CCTAGGTGGA
8748204 AAAATTCAAGGAAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
8748225 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
8748245 AAAAAAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.54, C:0.07, G:0.22, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:8748250 original size:22 final size:21
Alignment explanation
Indices: 8748203--8748250 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
8748193 CCCTAGGTGG
*
8748203 AAAAATTCAAGGAAAAAGTGT
1 AAAAATTCAAGGAAAAAGTGA
*
8748224 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAAGGAAA-AAGTGA
8748246 AAAAA
1 AAAAA
8748251 AGGTAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.60, C:0.06, G:0.19, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGGAAAAAGTGA
Found at i:8750928 original size:171 final size:171
Alignment explanation
Indices: 8750557--8751821 Score: 1283
Period size: 171 Copynumber: 7.4 Consensus size: 171
8750547 TCGTGACATC
* * * * *
8750557 ATCTCATTAA-TGATCTTAACTTGATTTTTTTTACATTTTTGGTTGAAACAGATTATAATTGATT
1 ATCTCA-TAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
* * * * * ** * * *
8750621 GTTTACATCGAGAAACGTGATGCAAAAGCCATCCATTGGGAAGAAAAGTTCAGTTATAGTCACTA
65 GTTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * *
8750686 ATGGCTTCGAAAGTCTTATTACTTACTTTAAATGGTTTTATA
130 ATGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
* * *
8750728 ATCTCATAATAGATTTTAAGTTGATTTTTTTTACATTTTTGGTTAAAACAAATTATAATTGAATG
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* * * * * * * *
8750793 TTTGCCTCAAAAAACATGAAGCAAAAGCCATCAATTGA-AAAAAAAATCTATTTATAGCCACTCA
66 TTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* *
8750857 TGCCTTCGGAAGCCTTATTACTTGCCTTAAATGGTTTTATA
131 TGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
* * * * ** * * *
8750898 ATCTCATAATAGATTTTAATTTGAATTTTTTTGCAATTTCAGTTAAGATAGATTATAATTAAATG
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* * * * *
8750963 TTTGCCTC-AGCAAACATGAAGCGAAAGCCATCTATTTACAAGAAAAGTCTATTTATAGTCACTT
66 TTTGCCTCAAG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
*
8751027 ATGCCTTTGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
130 ATGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
* * * * * * * * * *
8751069 ATCTCATAATTTACTTTAAGATGAAGTTTTCTACATTTTCGGCTAAAATAGAGTATAATTGATTG
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
*** * * * * * *
8751134 TTTGCCTTGGGAAACGTGATGTGAAAGCCATCGATTGAGAAGAAAAGTCCATATATAGCCACTCA
66 TTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* *
8751199 TGCCTTC-AACAACCTTATTACTTACTTTAAATGGTTTTATA
131 TGCCTTCGAA-AGCCTTATTACTTGCTTTAAATGGTTTTATA
* * * * *
8751240 ATCTCACAATTGATTTTAAGTTGAATTTTTTCACATTTTTGTTTAAGAA-ATATTATAATTAAAT
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAAT
* * * * * **
8751304 GTTTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCACTTATAGTCTTTC
65 GTTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * **
8751369 ATGCATTCAAAATCTTTATTGCTCACTTTAAATGGTTTTATA
130 ATGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
* * * *
8751411 ATCTCATTATTGATTTTAAGTTGAACTTTTCTACATTTTTGGTTCAAAACAGATTATAATTAAAT
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-AAAACAGATTATAATTGAAT
* * **
8751476 GTTTGCCTCAAGAAACGTGAAACGAAAGCCATCGATTAGGA-AA-AAAAGTCCACATATAGTCAC
65 GTTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATT--GACAAGAAAAGTCCATTTATAGTCAC
* * *
8751539 TCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGATTTTATA
128 TCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
* * * * * * *
8751583 ATCTCATAATTTATTTTAAGTTGAATTGTTTTATATTTTTGGTTAAAGCAGATGATAGTT-AGGT
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA-AT
* * ** * * *
8751647 TTTTTCCT--AGTTAAACGTTCAGTGAAAGCCATCCATTGAGAAGAAAAGACCATTTATAGTCAC
65 GTTTGCCTCAAG--AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC
* * *
8751710 TCATGTCTTCGAAAGCCTAATAACTTGCTTTAAATGGTTTTATA
128 TCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
* * * * *
8751754 AT-TGCATTATTGATTTTGAGTTGAATTTTTTTAAATTTTTAGTTAAAACATATTATAATTGAAT
1 ATCT-CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
8751818 GTTT
65 GTTT
8751822 ACCTNNNNNN
Statistics
Matches: 904, Mismatches: 172, Indels: 36
0.81 0.15 0.03
Matches are distributed among these distances:
169 5 0.01
170 151 0.17
171 600 0.66
172 144 0.16
173 2 0.00
174 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (171 bp):
ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
TTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
TGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
Found at i:8751329 original size:342 final size:340
Alignment explanation
Indices: 8750557--8751821 Score: 1333
Period size: 343 Copynumber: 3.7 Consensus size: 340
8750547 TCGTGACATC
* * * * * * *
8750557 ATCTCATTAA-TGATCTTAACTTGATTTTTTTTACATTTTTGGTTGAAACAGATTATAATTGATT
1 ATCTCA-TAATTGATTTTAAGTTGAATTTTTTCACATTTTT-GTTTAAACAGATTATAATTAAAT
* * * * * ** * * *
8750621 GTTTACATCGAGAAACGTGATGCAAAAGCCATCCATTGGGAAGAAAAGTTCAGTTATAGTCACTA
64 GTTTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTT
* * *
8750686 ATGGCTTCGAAAGTCTTATTACTTACTTTAAATGGTTTTATAATCTCATAATAGATTTTAAGTTG
129 ATGCCTTCGAAAGCCTTATTACTTACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
** * * * * *
8750751 ATTTTTTTTACATTTTTGGTTAAAACAAATTATAATTGAATGTTTGCCTCAAAAAACATGAAGCA
194 AACTTTTCTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCG
* * * * *
8750816 AAAGCCATCAATTGA-AAAAAAAATCTATTTATAGCCACTCATGCCTTCGGAAGCCTTATTACTT
259 AAAGCCATCGATTGAGAAAAAAAGTCCATATATAGCCACTCATGCCTTC-AAAGCCTTATTACTT
*
8750880 GCCTTAAATGGTTTTATA
323 GCTTTAAATGGTTTTATA
* * ** *
8750898 ATCTCATAATAGATTTTAATTTGAATTTTTTTGCA-ATTTCAG-TTAAGATAGATTATAATTAAA
1 ATCTCATAATTGATTTTAAGTTGAA-TTTTTT-CACATTTTTGTTTAA-ACAGATTATAATTAAA
* * * * *
8750961 TGTTTGCCTC-AGCAAACATGAAGCGAAAGCCATCTATTTACAAGAAAAGTCTATTTATAGTCAC
63 TGTTTACCTCGA-TAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC
* * * * *
8751025 TTATGCCTTTGAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTTACTTTAAGA
127 TTATGCCTTCGAAAGCCTTATTACTTACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGT
* * * * * * *** *
8751090 TGAAGTTTTCTACATTTTCGGCTAAAATAGAGTATAATTGATTGTTTGCCTTGGGAAACGTGATG
192 TGAACTTTTCTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAG
* * *
8751155 TGAAAGCCATCGATTGAGAAGAAAAGTCCATATATAGCCACTCATGCCTTCAACAACCTTATTAC
257 CGAAAGCCATCGATTGAGAAAAAAAGTCCATATATAGCCACTCATGCCTTCAA-AGCCTTATTAC
*
8751220 TTACTTTAAATGGTTTTATA
321 TTGCTTTAAATGGTTTTATA
* * *
8751240 ATCTCACAATTGATTTTAAGTTGAATTTTTTCACATTTTTGTTTAAGAAATATTATAATTAAATG
1 ATCTCATAATTGATTTTAAGTTGAATTTTTTCACATTTTTGTTTAA-ACAGATTATAATTAAATG
* *
8751305 TTTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCACTTATAGTC-TTTC
65 TTTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTT-
* * * * * * *
8751369 ATGCATTCAAAATCTTTATTGCTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTG
129 ATGCCTTCGAAAGCCTTATTACTTACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
* *
8751434 AACTTTTCTACATTTTTGGTTCAAAACAGATTATAATTAAATGTTTGCCTCAAGAAACGTGAAAC
194 AACTTTTCTACATTTTTGGTT-AAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGC
* * *
8751499 GAAAGCCATCGATT-AGGAAAAAAAGTCCACATATAGTCACTCATGCCTTTGAAAGCCTTATTAC
258 GAAAGCCATCGATTGA-GAAAAAAAGTCCATATATAGCCACTCATGCC-TTCAAAGCCTTATTAC
* *
8751563 TCGCTTTAAATGATTTTATA
321 TTGCTTTAAATGGTTTTATA
* * * * * **
8751583 ATCTCATAATTTATTTTAAGTTGAATTGTTTT-ATATTTTTGGTTAAAGCAGATGATAGTTAGGT
1 ATCTCATAATTGATTTTAAGTTGAATT-TTTTCACATTTTTGTTTAAA-CAGATTATAATTAAAT
* * * * * ** * * * *
8751647 TTTTTCCTAGTTAAACGTTCAGTGAAAGCCATCCATTGAGAAGAAAAGACCATTTATAGTCACTC
64 GTTTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTT
* * * * * *
8751712 ATGTCTTCGAAAGCCTAATAACTTGCTTTAAATGGTTTTATAAT-TGCATTATTGATTTTGAGTT
129 ATGCCTTCGAAAGCCTTATTACTTACTTTAAATGGTTTTATAATCT-CATAATTGATTTTAAGTT
* * * * *
8751776 GAATTTTTTTAAATTTTTAGTTAAAACATATTATAATTGAATGTTT
193 GAACTTTTCTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
8751822 ACCTNNNNNN
Statistics
Matches: 760, Mismatches: 146, Indels: 35
0.81 0.16 0.04
Matches are distributed among these distances:
340 9 0.01
341 214 0.28
342 258 0.34
343 270 0.36
344 9 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (340 bp):
ATCTCATAATTGATTTTAAGTTGAATTTTTTCACATTTTTGTTTAAACAGATTATAATTAAATGT
TTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTTAT
GCCTTCGAAAGCCTTATTACTTACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA
CTTTTCTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCGAA
AGCCATCGATTGAGAAAAAAAGTCCATATATAGCCACTCATGCCTTCAAAGCCTTATTACTTGCT
TTAAATGGTTTTATA
Found at i:8751674 original size:514 final size:510
Alignment explanation
Indices: 8750583--8751825 Score: 1442
Period size: 514 Copynumber: 2.4 Consensus size: 510
8750573 TAACTTGATT
* * * * * * * * * * **
8750583 TTTTTTACATTTTTGGTTGAAACAGATTATAATTGATTGTTTACATCGAGAAACGTGATGCAAAA
1 TTTTCTACATTTTCGGCTAAAACAGAGTATAATTGATTGTTTGCCTAGGGAAACGTCATGTGAAA
* * * * *
8750648 GCCATCCATTGGGAAGAAAAGTTCAGTTATAGTCACTAATGGCTTCGAAAGTCTTATTACTTACT
66 GCCATCCATTGAGAAGAAAAGTCCA-TTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTACT
* *
8750713 TTAAATGGTTTTATAATCTCATAATAGATTTTAAGTTGATTTTTTTTACATTTTTGGTTAAAACA
130 TTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAAAACA
* * *
8750778 AATTATAATTGAATGTTTGCCTCAAAAAACATGAAGCAAAAGCCATCAATTGAAAAAAAAATCTA
194 TATTATAATTGAATGTTTACCTCAAAAAACATGAAGCAAAAGCCATCAATTGAAAAAAAAATCCA
* * ** **
8750843 TTTATAGCCACTCATGCCTTCGGAAGCCTTATTACTTGCCTTAAATGGTTTTATAATCTCATAAT
259 CTTATAGCCACTCATGCATTCAAAAGCCTTATTACTCACCTTAAATGGTTTTATAATCTCATAAT
* * * * * *
8750908 AGATTTTAATTTGAATTTTTTTGCAATTTCAGTTAAGATAGATTATAATTAAATGTTTGCCTCAG
324 AGATTTTAAGTTGAACTTTTCTACAATTTCAGTTAAAACAGATTATAATTAAATGTTTGCCTCAG
* * * * ** *
8750973 CAAACATGAAGCGAAAGCCATCTATTTACAAGAAAAGTCTATTTATAGTCACTTATGCCTTTGAA
389 CAAACATGAAACGAAAGCCATCGATTTACAAAAAAAGTCCACATATAGTCACTCATGCCTTTGAA
* *
8751038 AGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTTACTTTAAGATGAAG
454 AGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTTACTTTAAGATGAAG
* * *
8751095 TTTTCTACATTTTCGGCTAAAATAGAGTATAATTGATTGTTTGCCTTGGGAAACGTGATGTGAAA
1 TTTTCTACATTTTCGGCTAAAACAGAGTATAATTGATTGTTTGCCTAGGGAAACGTCATGTGAAA
* * *
8751160 GCCATCGATTGAGAAGAAAAGTCCATATATAGCCACTCATGCCTTC-AACAACCTTATTACTTAC
66 GCCATCCATTGAGAAGAAAAGTCCAT-TATAGTCACTCATGCCTTCGAA-AGCCTTATTACTTAC
* *
8751224 TTTAAATGGTTTTATAATCTCACAATTGATTTTAAGTTGAATTTTTTCACATTTTTGTTTAAGAA
129 TTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTG-TTAA-AA
* * * * * * *
8751289 -ATATTATAATTAAATGTTTACCTCGATAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGT
192 CATATTATAATTGAATGTTTACCTCAAAAAACATGAAGCAAAAGCCATCAATTGA-AAAAAAAAT
* ** * * * *
8751353 CCACTTATAGTCTTTCATGCATTCAAAATCTTTATTGCTCACTTTAAATGGTTTTATAATCTCAT
256 CCACTTATAGCCACTCATGCATTCAAAAGCCTTATTACTCACCTTAAATGGTTTTATAATCTCAT
* * * **
8751418 TATTGATTTTAAGTTGAACTTTTCTACATTTTTGGTTCAAAACAGATTATAATTAAATGTTTGCC
321 AATAGATTTTAAGTTGAACTTTTCTACAATTTCAGTT-AAAACAGATTATAATTAAATGTTTGCC
* *
8751483 TCAAG-AAACGTGAAACGAAAGCCATCGA-TTAGGAAAAAAAGTCCACATATAGTCACTCATGCC
385 TC-AGCAAACATGAAACGAAAGCCATCGATTTA-CAAAAAAAGTCCACATATAGTCACTCATGCC
* *
8751546 TTTGAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTTATTTTAAGTTGAA-
448 TTTGAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTTACTTTAAGATGAAG
* * * * * * * * **
8751608 TTGTTTTATATTTTTGGTTAAAGCAGA-TGATAGTTAGGTT-TTTTCCTAGTTAAACGTTCA-GT
1 TT-TTCTACATTTTCGGCTAAAACAGAGT-ATAATT-GATTGTTTGCCTAGGGAAACG-TCATGT
* * * *
8751670 GAAAGCCATCCATTGAGAAGAAAAGACCATTTATAGTCACTCATGTCTTCGAAAGCCTAATAACT
62 GAAAGCCATCCATTGAGAAGAAAAGTCCA-TTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* * * *
8751735 TGCTTTAAATGGTTTTATAAT-TGCATTATTGATTTTGAGTTGAATTTTTTTAAATTTTTAGTTA
126 TACTTTAAATGGTTTTATAATCT-CATAATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTA
8751799 AAACATATTATAATTGAATGTTTACCT
189 AAACATATTATAATTGAATGTTTACCT
8751826 NNNNNNNNNN
Statistics
Matches: 616, Mismatches: 98, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
511 4 0.01
512 207 0.34
513 97 0.16
514 297 0.48
515 11 0.02
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (510 bp):
TTTTCTACATTTTCGGCTAAAACAGAGTATAATTGATTGTTTGCCTAGGGAAACGTCATGTGAAA
GCCATCCATTGAGAAGAAAAGTCCATTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTACTT
TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGTTAAAACATA
TTATAATTGAATGTTTACCTCAAAAAACATGAAGCAAAAGCCATCAATTGAAAAAAAAATCCACT
TATAGCCACTCATGCATTCAAAAGCCTTATTACTCACCTTAAATGGTTTTATAATCTCATAATAG
ATTTTAAGTTGAACTTTTCTACAATTTCAGTTAAAACAGATTATAATTAAATGTTTGCCTCAGCA
AACATGAAACGAAAGCCATCGATTTACAAAAAAAGTCCACATATAGTCACTCATGCCTTTGAAAG
CCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTTACTTTAAGATGAAG
Found at i:8754792 original size:171 final size:171
Alignment explanation
Indices: 8754362--8757671 Score: 3358
Period size: 171 Copynumber: 19.2 Consensus size: 171
8754352 NNNNNNNNNN
*
8754362 GAAAGTCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * *
8754427 TATATTGTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGTGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
* * *
8754492 CGATTGAGAAGAAAAGTGCATTTATAGTCACTAATGCCTTC
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
** * * * *
8754533 GGTAGCC-TATTGCTTGCTTTAAATGGTTGTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * *
8754597 TACATTTTTGTTTAAAAAATATTATAATTAAATGTTTACCAAGATAAACGTGAAGCAAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
* * * *
8754662 CCATTGACAAGAAAAGTCCACTTATAGTCTCACATGCCTTC
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
8754703 GAAATCCTTATTGCTTGCTTTAAATGGTTTTATAATCTCATTATTGATATGAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * *
8754768 TACATTTTTAGTTAAAACATATTATAATTAAATGTTTACCTCAG-GAAACGTGAAGCGAAAGCCA
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAAGCGAAAGCCA
** * *
8754832 TTGATTGTGACA-AAAAGTCCATTTATAGTCACTCATGCCTTT
130 TCCATTGAGA-AGAAAAGTCCATTTATAGTCACTCATGCCTTC
* *
8754874 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA--TTTT
* *** * * * * ** *
8754939 TTTACATTTTTTGTTAAGTTAGATGATAGTT-AGATTTTTTCCTAGTTAAACGTGAAACGAAAGC
64 TTTACATTTTTGGTTAAAACAGATTATAATTGA-ATGTTTACCTAGAGAAACGTGAAGCGAAAGC
* * * *
8755003 CATCCATTGAGAAGAAAAGTCGATTTATAGTCACTAATACCTTT
128 CATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
8755047 AAAAG-CTTGATAACTTGCTTTTAATGGTTTTATGAT-TGCATTATTGATTTTGAGTTG-ATTGT
1 GAAAGCCTT-ATTACTCGCTTTAAATGGTTTTATAATCT-CATTATTGATTTTAAGTTGAATT-T
* * * * *
8755109 TTTTACATTTTTGGTTAAAACATATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGTGAAAGC
63 TTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGC
* * * *
8755174 CATCGATAT-ACAAGAAAAGTCCATTTATAATCAATCATGCCTTC
128 CATCCAT-TGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
8755218 GAAAGCCATATTACTTGTTTTAGACGATTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTT
* * * *
8755283 TTACATTTTTTGTTAAAACAGATTATAAATGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCA
65 TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCA
* * * * * *
8755348 TCCATTGACATGAAAAGTCCATTTATTGTTAC-CTATACCTTT
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTC
* * * * *
8755390 AAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATTATTGATCTTAACTTGAAATTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* ** * * * * *
8755455 TACATTTTTGGTTAAAACAGATTATAATTGATTGTTTACCTCTAGCAATGTGATGTGAAACCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
* * * * *
8755520 CCATTGAGAAGAAAAGTTCAGTTATAGTCACTAATGGCTTT
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* ** * * *
8755561 GAATGTTTTATTACTAGCTTTAAATGGTTTTATAATCTCATAATTGATCTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * *
8755626 TAAATTTTTGGTTAAAACAAATTATAATTTAATGTTTGCCTTGAGAAACGTGAATCAAAAGCCA-
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
* * *
8755690 CCGATTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTT
131 CC-ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
8755732 GAAAGCCTTATCACTCGTTTTAAATGGTTTTATAATCCCATTATTGATCTTAAGTTGAA-TTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * ** **
8755796 TACATTTTTGATTAAAACAGATTATAATTGAATGTTTGCTTCTAGAAATATGAAGCGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
* * *
8755861 CCATTGACAAGAAAAGGCTCATTTATAGTCACTCATGCCTTT
131 CCATTGAGAAGAAAAGTC-CATTTATAGTCACTCATGCCTTC
* * * * *
8755903 AAAAGCCTTATTGCTCACTTTAAATGGTTTTATAATTTTATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTT
* ** * *
8755968 TTAAATTTTTGGTTAAAATTGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGTGAAAGCCA
65 TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCA
* *
8756033 TCGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
*
8756075 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATGTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * *
8756140 TACATTTTTGATTAAAATAAATTATATTTGAATGTTTACCTCAG-GAAACGTGAAGCGAAAGCCA
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAAGCGAAAGCCA
*
8756204 TCGATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *
8756246 GGAAGCCTTATTACTTGCTTTAAATGCTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
** * * * * * * *
8756311 TATTTTTTTTGGTTTAAATAGATTATAATTGAATGTTTGCTTCAG-GAAACATGAGGCGAAAACC
66 TA-CATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAAGCGAAAGCC
* * **
8756375 ATCGATT-AGCAAGAAAAGTCCACTTATAGTTGCTCATGCCTTC
129 ATCCATTGAG-AAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
8756418 AAAAGCCTTATTACTCATGCCTTCGAAA-GCCTTATTACTCGCTTTAAATGCTTTTATAATCTCA
1 GAAAGCCTTATTACTC--G-CTT-TAAATG-GTT-TTA-------T-AAT-C--TCATTAT-TGA
* * * * * *
8756482 TTATTGATTTTAATTTAAATTTTTTCACATTTTTGGGTAAAATAGATTATAATTGATTGTTTACC
48 TT-TTAAGTTGAA--T---TTTTTT-ACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
* * * * * * * * *
8756547 TCTG-TAAACGTGATGCGAAGGCCATCCATTGAGAAGAAAAGTTCAATTACAGTCACTCACGCGT
106 T-AGAGAAACGTGAAGCGAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCT
8756611 TC
170 TC
* * * * * *
8756613 GGAAGCCTTATTACTCACTTTAAATGGTTTAAGAATCTCATAATTAATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * ** * *
8756678 TACATTTTCGGTTAAGAA-AGATTATAATTAAATCTTCGCCTTGGGAAACGTGAAGCGAAAGCCA
66 TACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCA
* * *
8756742 TCGATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCTTTT
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *
8756784 GAAATCCTTATTACTCGCTTTAAATGGTTTTATAATCTCACTATTGATTTCAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* ** * *
8756849 TACATTTTTGGTT-AAACAAATTATAATTGAATGTTTTTCTCGAGAAACGTGAAGTGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
* *
8756913 CGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *
8756954 GAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * *
8757019 TACATTTTTGGTTAAAACATATGATAGTTTG-ATTTTTACCTTAG-GAAACATGAAGCGAAAGCC
66 TACATTTTTGGTTAAAACAGATTATA-ATTGAATGTTTACC-TAGAGAAACGTGAAGCGAAAGCC
* * * * * *
8757082 AACCATTGAGAGGAAGAGTCCATTTACAGTCACTCGTACCTTC
129 ATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
8757125 AAAAGCCTTATTACTTGATTTAAATTGTTTT-TCAATCTCATAATTTA-TTTAAGTTGAATTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATTATTGATTTTAAGTTGAATTTTT
* * * * * * * *
8757188 TTGCCTTCTTCGTTAAAACAGATTGTAATTGAATATTTGCCTTAG-GAAACGTTAAGCGAAAGCC
65 TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC-TAGAGAAACGTGAAGCGAAAGCC
* * * *
8757252 ATCCATTGGGAA-AAAAGGTCCATTTATAGTCACTCATACGTTT
129 ATCCATTGAGAAGAAAA-GTCCATTTATAGTCACTCATGCCTTC
* * * ** *
8757295 GAAAGCCTTATAACTCACTTTAAATGATCATATAATCTCATAATTGATTTTAAGTTGAATTGTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTT
* * * * *** * **
8757360 TTACATTTTTGGTTAAAACAGATTATAATTGAATTTTTAACTCGAAAAATACGAAGCAAAAAATC
65 TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGC-GAAAGCC
* * * * *
8757425 ATCCATTGATAAAAAAAGTCCACTTATAGTTAGTCATGCCTTC
129 ATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
8757468 AAAAGCCTTAGTACTCACTTTAGATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * ** * * * * * *
8757533 TACCTTTTTAGTTAAAACAGACAATAATTGAATTTTTACCTTG-GAAAATGTAAAGCAAAATACC
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAG-AAACGTGAAGCGAAA-GCC
* * * *
8757597 ATCCATTGAGAAGAAAACTTCATTTATAGTCACTCATGCATTT
129 ATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
8757640 GAAAGCCTTATTACTCGCTTTAAATGGTTTTA
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTA
8757672 AGTTGAATTT
Statistics
Matches: 2610, Mismatches: 457, Indels: 143
0.81 0.14 0.04
Matches are distributed among these distances:
169 8 0.00
170 501 0.19
171 1124 0.43
172 505 0.19
173 296 0.11
174 5 0.00
175 5 0.00
176 6 0.00
177 10 0.00
178 4 0.00
179 6 0.00
181 1 0.00
182 3 0.00
184 1 0.00
185 3 0.00
186 1 0.00
188 5 0.00
189 4 0.00
190 9 0.00
191 5 0.00
192 5 0.00
195 100 0.04
196 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (171 bp):
GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAAGCGAAAGCCAT
CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
Found at i:8755484 original size:343 final size:342
Alignment explanation
Indices: 8754362--8758042 Score: 3798
Period size: 343 Copynumber: 10.7 Consensus size: 342
8754352 NNNNNNNNNN
*
8754362 GAAAGTCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * *
8754427 TATATTGTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGTGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT
* * * * ** * *
8754492 CGATTGAGAAGAAAAGTGCATTTATAGTCACTAATGCCTTCGGTAGCC-TATTGCTTGCTTTAAA
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAA
* * * *
8754556 TGGTTGTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGTTTAAAAAATATTA
196 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTA
* ** * *
8754621 TAATTAAATGTTTACCAAGATAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCACTTA
261 TAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * *
8754686 TAGTCTCACATGCCTTC
326 TAGTCACTCATGCCTTT
* * * * *
8754703 GAAATCCTTATTGCTTGCTTTAAATGGTTTTATAATCTCATTATTGATATGAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * **
8754768 TACATTTTTAGTTAAAACATATTATAATTAAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT
** *
8754833 TGATTGTGACA-AAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAA
131 CCATTGAGA-AGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAA
* * ***
8754897 ATGGTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTTTTTACATTTTTTGTTAAGTTAGA
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA--TTTTTTTACATTTTTGGTTAAAACAGA
* * * * * ** * * * *
8754962 TGATAGTT-AGATTTTTTCCTAGTTAAACGTGAAACGAAAGCCATCCATTGAGAAGAAAAGTCGA
258 TTATAATTGA-ATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA
* *
8755026 TTTATAGTCACTAATACCTTT
322 TTTATAGTCACTCATGCCTTT
* * * * * *
8755047 AAAAG-CTTGATAACTTGCTTTTAATGGTTTTATGAT-TGCATTATTGATTTTGAGTTG-ATTGT
1 GAAAGCCTT-ATTACTCGCTTTAAATGGTTTTATAATCT-CATTATTGATTTTAAGTTGAATT-T
* * *
8755109 TTTTACATTTTTGGTTAAAACATATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGTGAAAGC
63 TTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGC
* * * * * * * *
8755174 CATCGATAT-ACAAGAAAAGTCCATTTATAATCAATCATGCCTTCGAAAGCCATATTACTTGTTT
128 CATCCAT-TGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTT
* * * * *
8755238 TAGACGATTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTTACATTTTTTGTTAAAACA
192 TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACATTTTTGGTTAAAACA
* *
8755303 GATTATAAATGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACATGAAAAGTCC
256 GATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
* * *
8755368 ATTTATTGTTAC-CTATACCTTT
321 ATTTATAGTCACTC-ATGCCTTT
* * * * *
8755390 AAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATTATTGATCTTAACTTGAAATTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * *
8755455 TACATTTTTGGTTAAAACAGATTATAATTGATTGTTTACCTCT-AGCAATGTGATGTGAAACCCA
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-TGGGAAACGTGAAGCGAAAGCCA
* * * * * ** *
8755519 TCCATTGAGAAGAAAAGTTCAGTTATAGTCACTAATGGCTTTGAATGTTTTATTACTAGCTTTAA
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAA
* * *
8755584 ATGGTTTTATAATCTCATAATTGATCTTAAGTTGAATTTTTTTAAATTTTTGGTTAAAACAAATT
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATT
* * * * *
8755649 ATAATTTAATGTTTGCCTTGAGAAACGTGAATCAAAAGCCA-CCGATTGACAAAAAAAGTCCATT
260 ATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCC-ATTGACAAGAAAAGTCCATT
8755713 TATAGTCACTCATGCCTTT
324 TATAGTCACTCATGCCTTT
* * * *
8755732 GAAAGCCTTATCACTCGTTTTAAATGGTTTTATAATCCCATTATTGATCTTAAGTTGAA-TTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * ** **
8755796 TACATTTTTGATTAAAACAGATTATAATTGAATGTTT-GCTTCTAGAAATATGAAGCGAAAGCCA
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTT-GGGAAACGTGAAGCGAAAGCCA
* * * * *
8755860 TCCATTGACAAGAAAAGGCTCATTTATAGTCACTCATGCCTTTAAAAGCCTTATTGCTCACTTTA
130 TCCATTGAGAAGAAAAGTC-CATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTA
* * * * **
8755925 AATGGTTTTATAATTTTATTATTGATTTTAAGTTGAATTTTTTTTAAATTTTTGGTTAAAATTGA
194 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACATTTTTGGTTAAAACAGA
** * *
8755990 TTATAATTGAATGTTTACCTCGAGAAACGTGAAGTGAAAGCCATCGATTGATAAGAAAAGTCCAT
258 TTATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCAT
*
8756055 TTATAGTCACTCATGCCTTC
323 TTATAGTCACTCATGCCTTT
*
8756075 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATGTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * **
8756140 TACATTTTTGATTAAAATAAATTATATTTGAATGTTTACCTCAGGAAACGTGAAGCGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT
* * * *
8756205 CGATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGGAAGCCTTATTACTTGCTTTAAA
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAA
* * ** * *
8756270 TGCTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTATTTTTTTTGGTTTAAATAGATT
196 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-CATTTTTGGTTAAAACAGATT
* * * * *
8756335 ATAATTGAATGTTTGCTTC-AGGAAACATGAGGCGAAAA-CCATCGATT-AGCAAGAAAAGTCCA
260 ATAATTGAATGTTTACCTCGA-GAAACGTGAAGC-AAAAGCCATCCATTGA-CAAGAAAAGTCCA
*
8756397 CTTATAGTTGCTCATGCCTTCAAAAGCCTTATTACTCATGCCTTC
322 -TT-TA-----T-A-G---T-------C-----ACTCATGCCTTT
* * *
8756442 GAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCTCATTATTGATTTTAATTTAAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * *
8756507 CACATTTTTGGGTAAAATAGATTATAATTGATTGTTTACCTCT-GTAAACGTGATGCGAAGGCCA
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-TGGGAAACGTGAAGCGAAAGCCA
* * * * * * * *
8756571 TCCATTGAGAAGAAAAGTTCAATTACAGTCACTCACGCGTTCGGAAGCCTTATTACTCACTTTAA
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAA
* * * *
8756636 ATGGTTTAAGAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTCGGTTAAGAA-AGAT
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AACAGAT
* * ** * * * * *
8756700 TATAATTAAATCTTCGCCTTGGGAAACGTGAAGCGAAAGCCATCGATTGAGAAGAAAAGTCCATT
259 TATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATT
*
8756765 TATAGTCACTCATGCTTTT
324 TATAGTCACTCATGCCTTT
* * *
8756784 GAAATCCTTATTACTCGCTTTAAATGGTTTTATAATCTCACTATTGATTTCAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* ** * * *
8756849 TACATTTTTGGTT-AAACAAATTATAATTGAATGTTTTTCTCGAGAAACGTGAAGTGAAAGCCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT
* * *
8756913 CGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
131 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAA
* * * *
8756978 TGCTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACATATGA
196 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTA
* * * * * * * * *
8757043 TAGTTTG-ATTTTTACCT-TAGGAAACATGAAGCGAAAGCCAACCATTGAGAGGAAGAGTCCATT
261 TA-ATTGAATGTTTACCTCGA-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * *
8757106 TACAGTCACTCGTACCTTC
324 TATAGTCACTCATGCCTTT
* * * * * *
8757125 AAAAGCCTTATTACTTGATTTAAATTGTTTT-TCAATCTCATAATTTA-TTTAAGTTGAATTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATTATTGATTTTAAGTTGAATTTTT
* * * * * * * * *
8757188 TTGCCTTCTTCGTTAAAACAGATTGTAATTGAATATTTGCCTTAGGAAACGTTAAGCGAAAGCCA
65 TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCA
* * * * *
8757253 TCCATTGGGAA-AAAAGGTCCATTTATAGTCACTCATACGTTTGAAAGCCTTATAACTCACTTTA
130 TCCATTGAGAAGAAAA-GTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTA
* **
8757317 AATGATCATATAATCTCATAATTGATTTTAAGTTGAATTGTTTTTACATTTTTGGTTAAAACAGA
194 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTACATTTTTGGTTAAAACAGA
* * * *** ** * *
8757382 TTATAATTGAATTTTTAACTCGAAAAATACGAAGCAAAAAATCATCCATTGATAAAAAAAGTCCA
258 TTATAATTGAATGTTTACCTCGAGAAACGTGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCCA
* * * *
8757447 CTTATAGTTAGTCATGCCTTC
322 TTTATAGTCACTCATGCCTTT
* * * * *
8757468 AAAAGCCTTAGTACTCACTTTAGATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * ** * * * * * *
8757533 TACCTTTTTAGTTAAAACAGACAATAATTGAATTTTTACCTTGGAAAATGTAAAGCAAAATACCA
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAA-GCCA
* * *
8757598 TCCATTGAGAAGAAAACTTCATTTATAGTCACTCATGCATTTGAAAGCCTTATTACTCGCTTTAA
130 TCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAA
* *
8757663 AT-G------------------G-TTTTAAGTTGAATTTTTCTACATTTTTTGTTAAAACAGATT
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATT
* ** * * * * **
8757708 ATCATTGAACATTTACCTTGGGAAACATGAAGCGAAAGCCATCCATTGGGAAGAAAAGTCCATTT
260 ATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
8757773 ATAGTCACTCATGCCTTT
325 ATAGTCACTCATGCCTTT
* * * *
8757791 GAAAGCCTTATTGCTCACTTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * ** * * *
8757856 TACAGTTTTGTTTAAAACAGATTATAATTGAACATTTGCCTTGGGAAACGTGAAGTGAAAACCAT
66 TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT
* * * * * *
8757921 TCACT-AGGAAGAAAAGTCCATTTATAGTCACTCATACATTTGAAAGCCTCATTACTTGCTTTAA
131 CCATTGA-GAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAA
* *
8757985 ATGGTTTTATAGTCTCATAATTGATTTTAAGTT-AGATTTTTTTACATTTTTGCTTAAA
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGA-ATTTTTTTACATTTTTGGTTAAA
8758043 GCCATCCATT
Statistics
Matches: 2785, Mismatches: 459, Indels: 191
0.81 0.13 0.06
Matches are distributed among these distances:
321 1 0.00
322 62 0.02
323 147 0.05
324 49 0.02
325 14 0.01
326 1 0.00
339 1 0.00
340 34 0.01
341 606 0.22
342 431 0.15
343 645 0.23
344 426 0.15
345 63 0.02
346 4 0.00
347 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
354 1 0.00
355 1 0.00
357 1 0.00
358 1 0.00
359 1 0.00
362 1 0.00
364 2 0.00
365 5 0.00
366 59 0.02
367 225 0.08
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (342 bp):
GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
TACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGGGAAACGTGAAGCGAAAGCCAT
CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAA
TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTA
TAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
TAGTCACTCATGCCTTT
Found at i:8755708 original size:514 final size:513
Alignment explanation
Indices: 8754362--8758042 Score: 3781
Period size: 514 Copynumber: 7.2 Consensus size: 513
8754352 NNNNNNNNNN
* *
8754362 GAAAGTCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
* * * * * *
8754427 TATATTGTTGGTTAAAATAGATTATAATTGAATGTTTGCCT-TGGGAAACGTGAAGTGAAAGCCA
66 TACATTTTTGGTTAAAATAGATTATAATTGATTGTTTACCTCT-AGAAACGTGAAGCGAAAGCCA
* * * ** *
8754491 TCGATTGAGAAGAAAAGTGCATTTATAGTCACTAATGCCTTCGGTAGCC-TATTGCTTGCTTTAA
130 TCCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAA
* *
8754555 ATGGTTGTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGTTTAAAA-AATAT
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAA-AT
* * ** * * * *
8754619 TATAATTAAATGTTTACCAAGATAAACGTGAAGCAAAAGCCATCC-ATTGACAAGAAAAGTCCAC
259 TATAATTGAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCA-CCGATTGAGAAGAAAAGTCCAT
* * * * * *
8754683 TTATAGTCTCACATGCCTTCGAAATCCTTATTGCTTGCTTTAAATGGTTTTATAATCTCATTATT
323 TTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATT
* * * * *
8754748 GATATGAAGTTGAATTTTTTTACATTTTTAGTTAAAACATATTATAATTAAATGTTTACCTC-AG
388 GATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCGA-
* **
8754812 GAAACGTGAAGCGAAAGCCATTGATTGTGAC-A-AAAAGTCCATTTATAGTCACTCATGCCTTT
452 GAAACGTGAAGCAAAAGCCATCCA-T-TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
*
8754874 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA--TTTT
* ** * * * *
8754939 TTTACATTTTTTGTTAAGTTAGATGATAGTTAGATT-TTT-TC-CTAGTTAAACGTGAAACGAAA
64 TTTACATTTTTGGTTAAAATAGATTATAATT-GATTGTTTACCTCTAG--AAACGTGAAGCGAAA
* * ** *
8755001 GCCATCCATTGAGAAGAAAAG-TCGATTTATAGTCACTAATACCTTTAAAAG-CTTGATAACTTG
126 GCCATCCATTGAGAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTT-ATTACTTG
* * * *
8755064 CTTTTAATGGTTTTATGAT-TGCATTATTGATTTTGAGTTG-ATTGTTTTTACATTTTTGGTTAA
189 CTTTAAATGGTTTTATAATCT-CATAATTGATTTTAAGTTGAATT-TTTTTACATTTTTGGTTAA
* * * * *
8755127 AACATATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGTGAAAGCCATCGATAT-ACAAGAAA
252 AACAAATTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCACCGAT-TGAGAAGAAA
* * * * * * * * *
8755191 AGTCCATTTATAATCAATCATGCCTTCGAAAGCCATATTACTTGTTTTAGACGATTTTATAATCT
316 AGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCT
*
8755256 CATTATTGATTTTAAGTTGAATTTTTTTTACATTTTTTGTTAAAACAGATTATAAATGAATGTTT
381 CATTATTGATTTTAAGTTGAA-TTTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTT
* * * *
8755321 ACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACATGAAAAGTCCATTTATTGTTAC-CTATA
445 ACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATG
8755385 CCTTT
509 CCTTT
* * * * * *
8755390 AAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATTATTGATCTTAACTTGAAATTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
* * * * * *
8755455 TACATTTTTGGTTAAAACAGATTATAATTGATTGTTTACCTCTAGCAATGTGATGTGAAACCCAT
66 TACATTTTTGGTTAAAATAGATTATAATTGATTGTTTACCTCTAGAAACGTGAAGCGAAAGCCAT
* * * * * ** *
8755520 CCATTGAGAAGAAAAGTTCAGTTATAGTCACTAATGGCTTTGAATGTTTTATTACTAGCTTTAAA
131 CCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAA
* *
8755585 TGGTTTTATAATCTCATAATTGATCTTAAGTTGAATTTTTTTAAATTTTTGGTTAAAACAAATTA
196 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAATTA
* * * * *
8755650 TAATTTAATGTTTGCCTTGAGAAACGTGAATCAAAAGCCACCGATTGACAAAAAAAGTCCATTTA
261 TAATTGAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCACCGATTGAGAAGAAAAGTCCATTTA
* * *
8755715 TAGTCACTCATGCCTTTGAAAGCCTTATCACTCGTTTTAAATGGTTTTATAATCCCATTATTGAT
326 TAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGAT
* * * *
8755780 CTTAAGTTGAA-TTTTTTACA-TTTTTGATTAAAACAGATTATAATTGAATGTTTGCTTCTAGAA
391 TTTAAGTTGAATTTTTTTACATTTTTTG-TTAAAACAGATTATAATTGAATGTTTACCTCGAGAA
** * *
8755843 ATATGAAGCGAAAGCCATCCATTGACAAGAAAAGGCTCATTTATAGTCACTCATGCCTTT
455 ACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTT
* * * * * *
8755903 AAAAGCCTTATTGCTCACTTTAAATGGTTTTATAATTTTATTATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTT
* * * * *
8755968 TTAAATTTTTGGTTAAAATTGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGTGAAAGCCA
65 TTACATTTTTGGTTAAAATAGATTATAATTGATTGTTTACCTCTAGAAACGTGAAGCGAAAGCCA
* * * *
8756033 TCGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA
130 TCCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAA
* * * *
8756098 ATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATGTTTTTACATTTTTGATTAAAATAAATT
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAATT
* * * *
8756163 ATATTTGAATGTTTACC-TCAGGAAACGTGAAGCGAAAGCCATCGATTGAGAAGAAAAGTCCATT
260 ATAATTGAATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCACCGATTGAGAAGAAAAGTCCATT
* * * *
8756227 TATAGTCACTCATGCCTTCGGAAGCCTTATTACTTGCTTTAAATGCTTTTATAATCTCATTATTG
324 TATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTG
** * * * *
8756292 ATTTTAAGTTGAATTTTTTTATTTTTTTTGGTTTAAATAGATTATAATTGAATGTTTGCTTC-AG
389 ATTTTAAGTTGAATTTTTTTACATTTTTT-GTTAAAACAGATTATAATTGAATGTTTACCTCGA-
* * *
8756356 GAAACATGAGGCGAAAA-CCATCGATT-AGCAAGAAAAGTCCACTTATAGTTGCTCATGCCTTCA
452 GAAACGTGAAGC-AAAAGCCATCCATTGA-CAAGAAAAGTCCA-TT-TA-----T-A-G---T--
*
8756419 AAAGCCTTATTACTCATGCCTTC
501 -----C-----ACTCATGCCTTT
* * * *
8756442 GAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCTCATTATTGATTTTAATTTAAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
* * * *
8756507 CACATTTTTGGGTAAAATAGATTATAATTGATTGTTTACCTCT-GTAAACGTGATGCGAAGGCCA
66 TACATTTTTGGTTAAAATAGATTATAATTGATTGTTTACCTCTAG-AAACGTGAAGCGAAAGCCA
* * * * * **
8756571 TCCATTGAGAAGAAAAGTTCAATTACAGTCACTCACGCGTTCGGAAGCCTTATTACTCACTTTAA
130 TCCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAA
* * * * *
8756636 ATGGTTTAAGAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTCGGTTAAGAA-AGAT
195 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AACAAAT
* * * * *
8756700 TATAATTAAATCTTCGCCTTGGGAAACGTGAAGCGAAAGCCATCGATTGAGAAGAAAAGTCCATT
259 TATAATTGAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCACCGATTGAGAAGAAAAGTCCATT
* * *
8756765 TATAGTCACTCATGCTTTTGAAATCCTTATTACTCGCTTTAAATGGTTTTATAATCTCACTATTG
324 TATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTG
* * * **
8756830 ATTTCAAGTTGAATTTTTTTACATTTTTGGTT-AAACAAATTATAATTGAATGTTTTTCTCGAGA
389 ATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCGAGA
** * *
8756894 AACGTGAAGTGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
454 AACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
* *
8756954 GAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCTCATAATTTATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
* * * * *
8757019 TACATTTTTGGTTAAAACATATGATAGTTTGATT-TTTACCT-TAGGAAACATGAAGCGAAAGCC
66 TACATTTTTGGTTAAAATAGATTATA-ATTGATTGTTTACCTCTA-GAAACGTGAAGCGAAAGCC
* * * * * * * * *
8757082 AACCATTGAGAGGAAGAGTCCATTTACAGTCACTCGTACCTTCAAAAGCCTTATTACTTGATTTA
129 ATCCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTA
* * * * * * *
8757147 AATTGTTTT-TCAATCTCATAATTTA-TTTAAGTTGAATTTTTTTGCCTTCTTCGTTAAAACAGA
194 AATGGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAA
* * * *
8757210 TTGTAATTGAATATTTGCCTT-AGGAAACGTTAAGCGAAAGCCATCC-ATTGGGAA-AAAAGGTC
258 TTATAATTGAATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCA-CCGATTGAGAAGAAAA-GTC
* * * * * ** *
8757272 CATTTATAGTCACTCATACGTTTGAAAGCCTTATAACTCACTTTAAATGATCATATAATCTCATA
320 CATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATT
* * *
8757337 ATTGATTTTAAGTTGAATTGTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATTTTTAACT
385 ATTGATTTTAAGTTGAATT-TTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCT
* *** ** * * * * *
8757402 CGAAAAATACGAAGCAAAAAATCATCCATTGATAAAAAAAGTCCACTTATAGTTAGTCATGCCTT
449 CGAGAAACGTGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
*
8757467 C
513 T
* * * *
8757468 AAAAGCCTTAGTACTCACTTTAGATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
* * * ** * * * * *
8757533 TACCTTTTTAGTTAAAACAGACAATAATTGAATT-TTTACCT-TGGAAAATGTAAAGCAAAATAC
66 TACATTTTTGGTTAAAATAGATTATAATTG-ATTGTTTACCTCTAG-AAACGTGAAGCGAAA-GC
* * * *
8757596 CATCCATTGAGAAGAAAACTTCATTTATAGTCACTCATGCATTTGAAAGCCTTATTACTCGCTTT
128 CATCCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTT
* * *
8757661 AAAT-G------------------G-TTTTAAGTTGAATTTTTCTACATTTTTTGTTAAAACAGA
193 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAA
* ** * * * *
8757706 TTATCATTGAACATTTACCTTGGGAAACATGAAGCGAAAGCCATCC-ATTGGGAAGAAAAGTCCA
258 TTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCA-CCGATTGAGAAGAAAAGTCCA
* * * *
8757770 TTTATAGTCACTCATGCCTTTGAAAGCCTTATTGCTCACTTTAAATGGTTATATAATCTCATAAT
322 TTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTAT
* ** * *
8757835 TGATTTTAAGTTGAATTTTTTTACA-GTTTTGTTTAAAACAGATTATAATTGAACATTTGCCTTG
387 TGATTTTAAGTTGAATTTTTTTACATTTTTTG-TTAAAACAGATTATAATTGAATGTTTACCTCG
* * * * * * *
8757899 GGAAACGTGAAGTGAAAA-CCATTCACT-AGGAAGAAAAGTCCATTTATAGTCACTCATACATTT
451 AGAAACGTGAAG-CAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
* * *
8757962 GAAAGCCTCATTACTTGCTTTAAATGGTTTTATAGTCTCATAATTGATTTTAAGTT-AGATTTTT
1 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA-ATTTTT
*
8758026 TTACATTTTTGCTTAAA
65 TTACATTTTTGGTTAAA
8758043 GCCATCCATT
Statistics
Matches: 2671, Mismatches: 409, Indels: 196
0.82 0.12 0.06
Matches are distributed among these distances:
493 2 0.00
494 105 0.04
495 46 0.02
496 160 0.06
497 4 0.00
510 6 0.00
511 156 0.06
512 334 0.13
513 125 0.05
514 805 0.30
515 259 0.10
516 213 0.08
517 8 0.00
522 1 0.00
523 1 0.00
524 2 0.00
527 2 0.00
528 1 0.00
529 1 0.00
534 3 0.00
535 5 0.00
536 54 0.02
537 6 0.00
538 307 0.11
539 65 0.02
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (513 bp):
GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
TACATTTTTGGTTAAAATAGATTATAATTGATTGTTTACCTCTAGAAACGTGAAGCGAAAGCCAT
CCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAA
TGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAATTA
TAATTGAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCACCGATTGAGAAGAAAAGTCCATTTA
TAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGAT
TTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAA
CGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
Found at i:8756435 original size:24 final size:24
Alignment explanation
Indices: 8756407--8756457 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
8756397 CTTATAGTTG
8756407 CTCATGCCTTCAAAAGCCTTATTA
1 CTCATGCCTTCAAAAGCCTTATTA
*
8756431 CTCATGCCTTCGAAAGCCTTATTA
1 CTCATGCCTTCAAAAGCCTTATTA
8756455 CTC
1 CTC
8756458 GCTTTAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.33
Consensus pattern (24 bp):
CTCATGCCTTCAAAAGCCTTATTA
Found at i:8757794 original size:151 final size:150
Alignment explanation
Indices: 8757515--8757993 Score: 469
Period size: 171 Copynumber: 3.0 Consensus size: 150
8757505 TCATAATTGA
* * ** **
8757515 TTTTAAGTTGAATTTTTTTACCTTTTTAGTTAAAACAGACAATAATTGAATTTTTACCTT-GGAA
1 TTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAATTGAACATTTACCTTGGGAA
* * * *
8757579 A-ATGTAAAGCAAAATACCATCCATTGAGAAGAAAACTTCATTTATAGTCACTCATGCATTTGAA
65 ACATG--AAGCGAAA-ACCATCCATTGGGAAGAAAAGTCCATTTATAGTCACTCATGCATTTGAA
8757643 AGCCTTATTACTCGCTTTAAATGG
127 AGCCTTATTACTCGCTTTAAATGG
*
8757667 TTTTAAGTTGAATTTTTCTACATTTTTTGTTAAAACAGATTATCATTGAACATTTACCTTGGGAA
1 TTTTAAGTTGAATTTTT-TACATTTTTTGTTAAAACAGATTATAATTGAACATTTACCTTGGGAA
* *
8757732 ACATGAAGCGAAAGCCATCCATTGGGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGC
65 ACATGAAGCGAAAACCATCCATTGGGAAGAAAAGTCCATTTATAGTCACTCATGCATTTGAAAGC
* *
8757797 CTTATTGCTCACTTTAAATGG
130 CTTATTACTCGCTTTAAATGG
*
8757818 TTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA-GTTTTGTTTAAAACAGATTATA
1 -----T--T-T--TAA--G----T----TGAA-TTTTTTACATTTTTTG-TTAAAACAGATTATA
* * * * * *
8757882 ATTGAACATTTGCCTTGGGAAACGTGAAGTGAAAACCATTCACTAGGAAGAAAAGTCCATTTATA
44 ATTGAACATTTACCTTGGGAAACATGAAGCGAAAACCATCCATTGGGAAGAAAAGTCCATTTATA
* * *
8757947 GTCACTCATACATTTGAAAGCCTCATTACTTGCTTTAAATGG
109 GTCACTCATGCATTTGAAAGCCTTATTACTCGCTTTAAATGG
8757989 TTTTA
1 TTTTA
8757994 TAGTCTCATA
Statistics
Matches: 272, Mismatches: 30, Indels: 41
0.79 0.09 0.12
Matches are distributed among these distances:
151 71 0.26
152 54 0.20
153 5 0.02
154 3 0.01
156 1 0.00
158 1 0.00
159 1 0.00
161 5 0.02
163 2 0.01
164 1 0.00
166 1 0.00
167 1 0.00
170 5 0.02
171 116 0.43
172 5 0.02
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (150 bp):
TTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAATTGAACATTTACCTTGGGAAA
CATGAAGCGAAAACCATCCATTGGGAAGAAAAGTCCATTTATAGTCACTCATGCATTTGAAAGCC
TTATTACTCGCTTTAAATGG
Found at i:8757952 original size:171 final size:170
Alignment explanation
Indices: 8757667--8758034 Score: 540
Period size: 171 Copynumber: 2.2 Consensus size: 170
8757657 CTTTAAATGG
* * *
8757667 TTTTAAGTTGAATTTTTCTACATTTTTTGTTAAAACAGATTATCATTGAACATTTACCTTGGGAA
1 TTTTAAGTTGAATTTTTTTACATTTTGT-TTAAAACAGATTATAATTGAACATTTACCTTGGGAA
* * * * *
8757732 ACATGAAGCGAAAGCCATCCATTGGGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGC
65 ACATGAAGCGAAAACCATCCACTAGGAAGAAAAGTCCATTTATAGTCACTCATACATTTGAAAGC
* *
8757797 CTTATTGCTCACTTTAAATGGTTATATAATCTCATAATTGA
130 CTCATTACTCACTTTAAATGGTTATATAATCTCATAATTGA
*
8757838 TTTTAAGTTGAATTTTTTTACAGTTTTGTTTAAAACAGATTATAATTGAACATTTGCCTTGGGAA
1 TTTTAAGTTGAATTTTTTTACA-TTTTGTTTAAAACAGATTATAATTGAACATTTACCTTGGGAA
* * *
8757903 ACGTGAAGTGAAAACCATTCACTAGGAAGAAAAGTCCATTTATAGTCACTCATACATTTGAAAGC
65 ACATGAAGCGAAAACCATCCACTAGGAAGAAAAGTCCATTTATAGTCACTCATACATTTGAAAGC
** * *
8757968 CTCATTACTTGCTTTAAATGGTTTTATAGTCTCATAATTGA
130 CTCATTACTCACTTTAAATGGTTATATAATCTCATAATTGA
8758009 TTTTAAGTT-AGATTTTTTTACATTTT
1 TTTTAAGTTGA-ATTTTTTTACATTTT
8758035 TGCTTAAAGC
Statistics
Matches: 177, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
170 5 0.03
171 167 0.94
172 5 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
TTTTAAGTTGAATTTTTTTACATTTTGTTTAAAACAGATTATAATTGAACATTTACCTTGGGAAA
CATGAAGCGAAAACCATCCACTAGGAAGAAAAGTCCATTTATAGTCACTCATACATTTGAAAGCC
TCATTACTCACTTTAAATGGTTATATAATCTCATAATTGA
Found at i:8758169 original size:127 final size:127
Alignment explanation
Indices: 8757925--8758162 Score: 361
Period size: 127 Copynumber: 1.9 Consensus size: 127
8757915 AACCATTCAC
* * ** * *
8757925 TAGGAAGAAAAGTCCATTTATAGTCACTCATACATTTGAAAGCCTCATTACTTGCTTTAAATGGT
1 TAGGAAGAAAAGTCCATTTATAATCACTCACACATTCAAAAGCCTCATTACTCGCGTTAAATGGT
* *
8757990 TTTATAGTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGCTTAAAGCCATCCAT
66 TATATAATCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGCTTAAAGCCATCCAT
* * *
8758052 TAGGAAGAAAAGTCTATTTATAATCACTCACACCTTCAAAAGCCTTATTACTCGCGTTAAATGGT
1 TAGGAAGAAAAGTCCATTTATAATCACTCACACATTCAAAAGCCTCATTACTCGCGTTAAATGGT
8758117 TATATAATCTCATAATTGATTTTAAGTT-GAATTTTTTTACATTTTT
66 TATATAATCTCATAATTGATTTTAAGTTAG-ATTTTTTTACATTTTT
8758163 TGTTAAAACA
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
126 1 0.01
127 98 0.99
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (127 bp):
TAGGAAGAAAAGTCCATTTATAATCACTCACACATTCAAAAGCCTCATTACTCGCGTTAAATGGT
TATATAATCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGCTTAAAGCCATCCAT
Found at i:8758282 original size:298 final size:298
Alignment explanation
Indices: 8757742--8758339 Score: 855
Period size: 298 Copynumber: 2.0 Consensus size: 298
8757732 ACATGAAGCG
* * ** ** *
8757742 AAAGCCATCCATTGGGAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTGCTC
1 AAAGCCATCCATTAGGAAGAAAAGTCCATTTATAATCACTCACACCTTCAAAAGCCTTATTACTC
*
8757807 ACTTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAGTTTTGTTTAAA
66 ACGTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAGTTTTGTTTAAA
* * * *
8757872 ACAGATTATAATTGAACATTTGCCTTGGGAAACGTGAAGTGAAAACCATTCACTAGGAAGAAAAG
131 ACAGATTATAATTAAACATTTACCTCGAGAAACGTGAAGTGAAAACCATTCACTAGGAAGAAAAG
* * * * *
8757937 TCCATTTATAGTCACTCATACATTTGAAAGCCTCATTACTTGCTTTAAATGGTTTTATAGTCTCA
196 TCCATTTATAGTCACTCATACATTCGAAAGCCTCATTACTCGCTTTAAATGATTTTAGAATCTCA
8758002 TAATTGATTTTAAGTT-AGATTTTTTTACATTTTTGCTT
261 TAATTGATTTTAAGTTGA-ATTTTTTTACATTTTTGCTT
*
8758040 AAAGCCATCCATTAGGAAGAAAAGTCTATTTATAATCACTCACACCTTCAAAAGCCTTATTACTC
1 AAAGCCATCCATTAGGAAGAAAAGTCCATTTATAATCACTCACACCTTCAAAAGCCTTATTACTC
* *
8758105 GCGTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTTTGTTAA
66 ACGTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAGTTTTGT-TTAA
* * *
8758169 AACAGATTATAATTAAATATTTACCTCGAGAAACGTGAAGTGAAAGGCC--TCTATTAGGAAGAA
130 AACAGATTATAATTAAACATTTACCTCGAGAAACGTGAAGTGAAA-ACCATTC-ACTAGGAAGAA
* * * *
8758232 AAGTCCATATT-TAGTCACTCATGCCTTCGGAAGCCTTATTACTCGCTTTAAATGATTTTAGAAT
193 AAGTCCAT-TTATAGTCACTCATACATTCGAAAGCCTCATTACTCGCTTTAAATGATTTTAGAAT
* *
8758296 CTCATAATTGATTTTAAGTTGAATTTTTTTACCTTTTTGGTT
257 CTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGCTT
8758338 AA
1 AA
8758340 GAAAGATAAT
Statistics
Matches: 266, Mismatches: 29, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
297 7 0.03
298 254 0.95
299 5 0.02
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (298 bp):
AAAGCCATCCATTAGGAAGAAAAGTCCATTTATAATCACTCACACCTTCAAAAGCCTTATTACTC
ACGTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAGTTTTGTTTAAA
ACAGATTATAATTAAACATTTACCTCGAGAAACGTGAAGTGAAAACCATTCACTAGGAAGAAAAG
TCCATTTATAGTCACTCATACATTCGAAAGCCTCATTACTCGCTTTAAATGATTTTAGAATCTCA
TAATTGATTTTAAGTTGAATTTTTTTACATTTTTGCTT
Found at i:8758354 original size:171 final size:169
Alignment explanation
Indices: 8758040--8758577 Score: 688
Period size: 171 Copynumber: 3.1 Consensus size: 169
8758030 ATTTTTGCTT
* * * * **
8758040 AAAGCCATCCATTAGGAAGAAAAGTCTATTTATAATCACTCACACCTTCAAAAGCCTTATTACTC
1 AAAGGCATCTATTAGGAAGAAAAGTCCATTT-TAGTCACTCATGCCTTCAAAAGCCTTATTACTC
* * * *
8758105 GCGTTAAATGGTTATATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAA
65 GCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACCTTTTTGGTTAAA
8758170 ACAGATTATAATTAAATATTTACCTCGAGAAACGTGAAGTG
130 ACAGATTATAATTAAATATTTACCTCGAGAAACGTGAAG-G
* **
8758211 AAAGGCCTCTATTAGGAAGAAAAGTCCATATTTAGTCACTCATGCCTTCGGAAGCCTTATTACTC
1 AAAGGCATCTATTAGGAAGAAAAGTCCAT-TTTAGTCACTCATGCCTTCAAAAGCCTTATTACTC
* *
8758276 GCTTTAAATGATTTTAGAATCTCATAATTGATTTTAAGTTGAATTTTTTTACCTTTTTGGTTAAG
65 GCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACCTTTTTGGTTAA-
* * *
8758341 AA-AGATAATAATTAAATA-TTGCCTCG-GTAAACGTGAAGC
129 AACAGATTATAATTAAATATTTACCTCGAG-AAACGTGAAGG
* * * * *
8758380 AAAAGCAATCTATT-GACAAGAAAAGTCCACTTATAGTCACTCATGCCTTTAAAATCCTTATTAC
1 AAAGGC-ATCTATTAG-GAAGAAAAGTCCA-TTTTAGTCACTCATGCCTTCAAAAGCCTTATTAC
* *
8758444 TCGCTTTAAATGGTTTTATAATCTTATTATTGATTTTAAGTTGAATTTTTTTTACCTTTTTGGTT
63 TCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACCTTTTTGGTT
* *
8758509 AAAACAGATTATAATTGAATATTTACCTCAAGAAACGTGAAGCG
127 AAAACAGATTATAATTAAATATTTACCTCGAGAAACGTGAAG-G
* * *
8758553 AAAGTCAACCATTAGGAAGAAAAGT
1 AAAGGCATCTATTAGGAAGAAAAGT
8758578 GTCACGACCC
Statistics
Matches: 315, Mismatches: 40, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
169 7 0.02
170 106 0.34
171 162 0.51
172 34 0.11
173 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (169 bp):
AAAGGCATCTATTAGGAAGAAAAGTCCATTTTAGTCACTCATGCCTTCAAAAGCCTTATTACTCG
CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACCTTTTTGGTTAAAA
CAGATTATAATTAAATATTTACCTCGAGAAACGTGAAGG
Found at i:8760546 original size:19 final size:19
Alignment explanation
Indices: 8760522--8760559 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8760512 CTGCCAAACC
*
8760522 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
8760541 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
8760560 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:8764320 original size:5 final size:5
Alignment explanation
Indices: 8764311--8764354 Score: 72
Period size: 5 Copynumber: 9.0 Consensus size: 5
8764301 TATTCTACCG
*
8764311 AACTT GACTT AACTT AAC-T AACTT AACTT AACTT AACTT AACTT
1 AACTT AACTT AACTT AACTT AACTT AACTT AACTT AACTT AACTT
8764355 GGACCACGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (5 bp):
AACTT
Found at i:8764409 original size:15 final size:15
Alignment explanation
Indices: 8764389--8764434 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8764379 TTCTTAAAAC
8764389 AACTTTAAAACCAAA
1 AACTTTAAAACCAAA
8764404 AACTTTAAAATCC-AA
1 AACTTTAAAA-CCAAA
* *
8764419 AGCTTTAAAATCAAA
1 AACTTTAAAACCAAA
8764434 A
1 A
8764435 TCCTAATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 24 0.89
16 2 0.07
ACGTcount: A:0.57, C:0.17, G:0.02, T:0.24
Consensus pattern (15 bp):
AACTTTAAAACCAAA
Found at i:8767170 original size:19 final size:19
Alignment explanation
Indices: 8767146--8767183 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8767136 CTGCTAATCC
* *
8767146 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCAAATA
8767165 CTCAAATCATACTCAAATA
1 CTCAAATCATACTCAAATA
8767184 AGTTAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCAAATA
Found at i:8775488 original size:47 final size:47
Alignment explanation
Indices: 8775400--8775492 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 47
8775390 GGAAGCAAAG
* ** *
8775400 AGAAATGAACCCATTATATTTATTTGCTATTAACTATAGAGAGAGAT
1 AGAAATGAACCCATTATATTTATTTGATATTAAAGAGAGAGAGAGAT
* *
8775447 AGAAATGAACTCATTATATTTATTT-ATGATTAAAGGGAGAGAGAGA
1 AGAAATGAACCCATTATATTTATTTGAT-ATTAAAGAGAGAGAGAGA
8775493 GGTGATGTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 1 0.03
47 38 0.97
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (47 bp):
AGAAATGAACCCATTATATTTATTTGATATTAAAGAGAGAGAGAGAT
Found at i:8775750 original size:58 final size:58
Alignment explanation
Indices: 8775642--8775764 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
8775632 GATTATTGAA
* * * * * *
8775642 GTGAACTAGTGGTTTTCTGATGACTTTCAATTGCAGTGGCGGGGTGATGGTCTTGGAG
1 GTGAATTAGTGATTTTCTGATGACTTTCAATTACAGCGGCGGGGTAATGGTCGTGGAG
* * * * *
8775700 GTGAATTAGTGATTTTCTGGTGACTTTCAATTATAGCGGTGGGTTAATGGTGGTGGAG
1 GTGAATTAGTGATTTTCTGATGACTTTCAATTACAGCGGCGGGGTAATGGTCGTGGAG
8775758 GTGAATT
1 GTGAATT
8775765 GTGTCACCAT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.20, C:0.09, G:0.35, T:0.37
Consensus pattern (58 bp):
GTGAATTAGTGATTTTCTGATGACTTTCAATTACAGCGGCGGGGTAATGGTCGTGGAG
Found at i:8775895 original size:16 final size:15
Alignment explanation
Indices: 8775876--8775917 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
8775866 TATAAATTAA
8775876 ATAATATATATATTTT
1 ATAATA-ATATATTTT
8775892 ATAA-AATATA-TTT
1 ATAATAATATATTTT
*
8775905 AAAATAATATATT
1 ATAATAATATATT
8775918 ATCAATAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 6 0.26
14 11 0.48
15 2 0.09
16 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATAATATATTTT
Found at i:8784147 original size:24 final size:25
Alignment explanation
Indices: 8784119--8784168 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
8784109 TACTGAAAAG
8784119 TAAAACCCAAAAAGAA-CAAACTAA
1 TAAAACCCAAAAAGAATCAAACTAA
*
8784143 TAAAACCTAAAAAGAATTCAAACTAA
1 TAAAACCCAAAAAGAA-TCAAACTAA
8784169 GAAGATGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.65
26 8 0.35
ACGTcount: A:0.64, C:0.18, G:0.04, T:0.14
Consensus pattern (25 bp):
TAAAACCCAAAAAGAATCAAACTAA
Found at i:8789273 original size:15 final size:14
Alignment explanation
Indices: 8789246--8789362 Score: 108
Period size: 15 Copynumber: 7.9 Consensus size: 14
8789236 TTGATTGAGG
*
8789246 ATGAAGAAGATGAC
1 ATGAAGGAGATGAC
*
8789260 ATGCAAGGAGATGAAG
1 ATG-AAGGAGATG-AC
*
8789276 ATGAAGAAGATGAC
1 ATGAAGGAGATGAC
*
8789290 ATGCAAGGAGATGAAG
1 ATG-AAGGAGATG-AC
*
8789306 ATGAAGAAGATGAC
1 ATGAAGGAGATGAC
*
8789320 ATGTAAGGAGATGAA
1 ATG-AAGGAGATGAC
* *
8789335 ATGAAGAAGATGAT
1 ATGAAGGAGATGAC
8789349 ATGGAAGGAGATGA
1 AT-GAAGGAGATGA
8789363 AAATAAAGAT
Statistics
Matches: 84, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
14 22 0.26
15 54 0.64
16 8 0.10
ACGTcount: A:0.47, C:0.04, G:0.33, T:0.15
Consensus pattern (14 bp):
ATGAAGGAGATGAC
Found at i:8789281 original size:30 final size:30
Alignment explanation
Indices: 8789245--8789363 Score: 204
Period size: 30 Copynumber: 4.0 Consensus size: 30
8789235 CTTGATTGAG
8789245 GATGAAGAAGATGACATGCAAGGAGATGAA
1 GATGAAGAAGATGACATGCAAGGAGATGAA
8789275 GATGAAGAAGATGACATGCAAGGAGATGAA
1 GATGAAGAAGATGACATGCAAGGAGATGAA
*
8789305 GATGAAGAAGATGACATGTAAGGAGATGAA
1 GATGAAGAAGATGACATGCAAGGAGATGAA
* *
8789335 -ATGAAGAAGATGATATGGAAGGAGATGAA
1 GATGAAGAAGATGACATGCAAGGAGATGAA
8789364 AATAAAGATG
Statistics
Matches: 86, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 27 0.31
30 59 0.69
ACGTcount: A:0.47, C:0.04, G:0.34, T:0.15
Consensus pattern (30 bp):
GATGAAGAAGATGACATGCAAGGAGATGAA
Found at i:8792795 original size:38 final size:40
Alignment explanation
Indices: 8792710--8792811 Score: 127
Period size: 38 Copynumber: 2.6 Consensus size: 40
8792700 CCAGCTCATA
*
8792710 TACATCCCCCCACATCATGCACATAGCCGGCGCCATCGTG
1 TACATCCCCCCACATCATGCACATAGCCAGCGCCATCGTG
** * * *
8792750 TGTATCCCCCCACATCGTGCACA-A-TCAGTGCCATCGTG
1 TACATCCCCCCACATCATGCACATAGCCAGCGCCATCGTG
8792788 TACATCCCCCCACAATCATGCACA
1 TACATCCCCCCAC-ATCATGCACA
8792812 CGGGCACTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 22 0.42
39 10 0.19
40 20 0.38
ACGTcount: A:0.25, C:0.41, G:0.15, T:0.20
Consensus pattern (40 bp):
TACATCCCCCCACATCATGCACATAGCCAGCGCCATCGTG
Found at i:8792934 original size:2 final size:2
Alignment explanation
Indices: 8792923--8792961 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
8792913 AATCATCATG
8792923 CA CA -A CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8792962 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8792966 original size:2 final size:2
Alignment explanation
Indices: 8792961--8792988 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8792951 ACACACACAC
8792961 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8792989 TCATAATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8801601 original size:63 final size:63
Alignment explanation
Indices: 8801494--8801673 Score: 297
Period size: 63 Copynumber: 2.9 Consensus size: 63
8801484 TCGCCGTCCC
* * * * *
8801494 CACAACCTTTATCATTTAACCGGCATTGCACTTCCCACTTCGCACATGCACGGTCGTAATTAT
1 CACATCCTTTGTCATTCAACTGGCATTGCACTTCCCACTCCGCACATGCACGGTCGTAATTAT
*
8801557 CACATCCTTTGTCATTCAACTGGCATTGCACTTCCCACTCCGCACATGCACGGTCGTAATTGT
1 CACATCCTTTGTCATTCAACTGGCATTGCACTTCCCACTCCGCACATGCACGGTCGTAATTAT
*
8801620 CACATCCTTTGTCATTCAACTAGCATTGCACTTCCCACTCCGCACATGCACGGT
1 CACATCCTTTGTCATTCAACTGGCATTGCACTTCCCACTCCGCACATGCACGGT
8801674 TGCATCAATT
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 110 1.00
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (63 bp):
CACATCCTTTGTCATTCAACTGGCATTGCACTTCCCACTCCGCACATGCACGGTCGTAATTAT
Found at i:8807072 original size:13 final size:13
Alignment explanation
Indices: 8807054--8807079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8807044 GGAAAATGAG
8807054 ATTTTATAAAATT
1 ATTTTATAAAATT
8807067 ATTTTATAAAATT
1 ATTTTATAAAATT
8807080 TTTAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:8811481 original size:20 final size:20
Alignment explanation
Indices: 8811453--8811494 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8811443 ATTAGGTTAC
8811453 TTTAAGTTAGTT-ATTTTAAT
1 TTTAAGTTA-TTCATTTTAAT
* *
8811473 TTTATGTTATTCCTTTTAAT
1 TTTAAGTTATTCATTTTAAT
8811493 TT
1 TT
8811495 GGTTATGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (20 bp):
TTTAAGTTATTCATTTTAAT
Found at i:8816552 original size:26 final size:26
Alignment explanation
Indices: 8816492--8816553 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
8816482 ACCATATACC
*
8816492 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
8816518 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
8816544 TATCATCATC
1 CATCATCATC
8816554 TCATATGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.39, G:0.03, T:0.26
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:8816846 original size:42 final size:42
Alignment explanation
Indices: 8816788--8816953 Score: 287
Period size: 42 Copynumber: 4.0 Consensus size: 42
8816778 ATGGGGGCAA
* *
8816788 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* *
8816830 CAACGGCTTATATGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
*
8816872 CAACGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
8816914 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
8816954 CAAATCAACA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 118 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:8825387 original size:21 final size:20
Alignment explanation
Indices: 8825347--8825387 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
8825337 TGAGCTGATT
8825347 TTGGTGATTTTAATGAGTTA
1 TTGGTGATTTTAATGAGTTA
8825367 TTGGTTGATATTTAATG-GTTA
1 TTGG-TGAT-TTTAATGAGTTA
8825388 GAAATGTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (20 bp):
TTGGTGATTTTAATGAGTTA
Found at i:8828824 original size:35 final size:35
Alignment explanation
Indices: 8828769--8828848 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
8828759 CTGGTTCCCC
* *
8828769 AGATATTTGTTTTTAGTTATTTAATTT-TATGTTTA
1 AGATTTTTGTTTTTAGTTATTTAATTTAAAT-TTTA
8828804 AGATTTTTGTTTTT-GATTATTTAATTTAAATTTTA
1 AGATTTTTGTTTTTAG-TTATTTAATTTAAATTTTA
*
8828839 ATATTTTTGT
1 AGATTTTTGT
8828849 GGAAGAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
34 1 0.03
35 37 0.93
36 2 0.05
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (35 bp):
AGATTTTTGTTTTTAGTTATTTAATTTAAATTTTA
Found at i:8829295 original size:29 final size:29
Alignment explanation
Indices: 8829259--8829314 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
8829249 AATAGGTCAA
8829259 AATA-TTTTCAACGGAAAATTT-CGTTGGT
1 AATATTTTTCAAC-GAAAATTTCCGTTGGT
8829287 AATATTTTTTCAACGAAAATTTCCGTTG
1 AATA-TTTTTCAACGAAAATTTCCGTTG
8829315 AAAATGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 4 0.16
29 8 0.32
30 13 0.52
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.41
Consensus pattern (29 bp):
AATATTTTTCAACGAAAATTTCCGTTGGT
Found at i:8839351 original size:17 final size:18
Alignment explanation
Indices: 8839329--8839367 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
8839319 TTTATTTTTC
8839329 AAAAAAAAAAGAAAT-GA
1 AAAAAAAAAAGAAATGGA
* *
8839346 AAAAAAGAGAGAAATGGA
1 AAAAAAAAAAGAAATGGA
8839364 AAAA
1 AAAA
8839368 CTGGTACGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAAGAAATGGA
Found at i:8840787 original size:53 final size:53
Alignment explanation
Indices: 8840677--8840793 Score: 130
Period size: 53 Copynumber: 2.2 Consensus size: 53
8840667 TCCAATGGAT
* * * * *
8840677 TTCCAACGAAAATTCCGTTGGAAAACAATGTAAAAAGAAAATTCATTGAAAAT
1 TTCCAACGGAAATTCAGTTGGAAAACAAGGGAAAAAGAAAATTCATTGAAAAG
**
8840730 TTCCAACGGAAATTCAGTTGGAAAACTCGGGAAAAAG-AAATTCTATTCG-AAAG
1 TTCCAACGGAAATTCAGTTGGAAAACAAGGGAAAAAGAAAATTC-ATT-GAAAAG
*
8840783 TTCCAATGGAA
1 TTCCAACGGAA
8840794 TTTTTATTGG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
52 6 0.11
53 47 0.87
54 1 0.02
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (53 bp):
TTCCAACGGAAATTCAGTTGGAAAACAAGGGAAAAAGAAAATTCATTGAAAAG
Found at i:8845455 original size:18 final size:18
Alignment explanation
Indices: 8845425--8845477 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
8845415 TATATAAAGT
8845425 TGTATGT-AA-ATATATA
1 TGTATGTAAACATATATA
* *
8845441 TGTAT-TAACTCATATACA
1 TGTATGTAA-ACATATATA
8845459 TGTATGTAAACATATATA
1 TGTATGTAAACATATATA
8845477 T
1 T
8845478 TAACTCATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
15 1 0.03
16 6 0.21
18 19 0.66
19 3 0.10
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (18 bp):
TGTATGTAAACATATATA
Done.