Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 25 of 30
Found at i:8845484 original size:32 final size:33
Alignment explanation
Indices: 8845425--8845491 Score: 109
Period size: 32 Copynumber: 2.0 Consensus size: 33
8845415 TATATAAAGT
*
8845425 TGTATGTAAATATATATGTATTAACTCATATACA
1 TGTATGTAAACATATA-GTATTAACTCATATACA
8845459 TGTATGTAAACATATA-TATTAACTCATATACA
1 TGTATGTAAACATATAGTATTAACTCATATACA
8845491 T
1 T
8845492 AAAGTTGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 17 0.53
34 15 0.47
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (33 bp):
TGTATGTAAACATATAGTATTAACTCATATACA
Found at i:8846165 original size:11 final size:11
Alignment explanation
Indices: 8846148--8846191 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
8846138 TATAGCCGGC
8846148 CAAAGGAA-AA
1 CAAAGGAAGAA
8846158 CAAAAGGAAGAA
1 C-AAAGGAAGAA
8846170 CAAAGGAAG-A
1 CAAAGGAAGAA
8846180 -AAA-GAAGAA
1 CAAAGGAAGAA
8846189 CAA
1 CAA
8846192 GAACCCTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.13
9 4 0.13
10 4 0.13
11 15 0.50
12 3 0.10
ACGTcount: A:0.68, C:0.09, G:0.23, T:0.00
Consensus pattern (11 bp):
CAAAGGAAGAA
Found at i:8852349 original size:21 final size:21
Alignment explanation
Indices: 8852324--8852364 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8852314 ATGAATAACT
* *
8852324 TAAGTTTAAAACTCATTCAAA
1 TAAGTTCAAAAATCATTCAAA
8852345 TAAGTTCAAAAATCATTCAA
1 TAAGTTCAAAAATCATTCAA
8852365 GCAATTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.32
Consensus pattern (21 bp):
TAAGTTCAAAAATCATTCAAA
Found at i:8854084 original size:31 final size:31
Alignment explanation
Indices: 8854039--8854121 Score: 121
Period size: 31 Copynumber: 2.7 Consensus size: 31
8854029 CAACGTTGGT
* *
8854039 ATGTTACAATATTTTACGTTATATGCATGGC
1 ATGTTACCACATTTTACGTTATATGCATGGC
*
8854070 GTGTTACCACATTTTACGTTATATGCATGGC
1 ATGTTACCACATTTTACGTTATATGCATGGC
* *
8854101 ATGTTACCACAATTTATGTTA
1 ATGTTACCACATTTTACGTTA
8854122 GGGGCATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (31 bp):
ATGTTACCACATTTTACGTTATATGCATGGC
Found at i:8854318 original size:24 final size:24
Alignment explanation
Indices: 8854291--8854348 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
8854281 TTAGCGTGTT
* *
8854291 ACACGTCATGTACAAAAATCTATG
1 ACACGCCATGTACAAAAACCTATG
*
8854315 ACACGCCATGTACAAAAACCTGTG
1 ACACGCCATGTACAAAAACCTATG
*
8854339 ACAAGCCATG
1 ACACGCCATG
8854349 GTTAGCGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.19
Consensus pattern (24 bp):
ACACGCCATGTACAAAAACCTATG
Found at i:8854357 original size:69 final size:69
Alignment explanation
Indices: 8854246--8854393 Score: 233
Period size: 69 Copynumber: 2.1 Consensus size: 69
8854236 CTATGATGTT
* * * *
8854246 ACACGCCATGTACAAAAATCTATGACAAGCCATGGTTAGCGTGTTACACGTCATGTACAAAAATC
1 ACACGCCATGTACAAAAACCTATGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACC
8854311 TATG
66 TATG
*
8854315 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACC
1 ACACGCCATGTACAAAAACCTATGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACC
*
8854380 TGTG
66 TATG
*
8854384 ACAAGCCATG
1 ACACGCCATG
8854394 GTTAGTGTGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (69 bp):
ACACGCCATGTACAAAAACCTATGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACC
TATG
Found at i:8854363 original size:45 final size:45
Alignment explanation
Indices: 8854313--8854438 Score: 198
Period size: 45 Copynumber: 2.8 Consensus size: 45
8854303 CAAAAATCTA
8854313 TGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTG
1 TGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTG
*
8854358 TGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTG
1 TGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTG
* * * * *
8854403 TTACACGCTATGTACAAAAACATGTGGCACGCCATG
1 TGACACGCCATGTACAAAAACCTGTGACAAGCCATG
8854439 TACAAAAACC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (45 bp):
TGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTG
Found at i:8854434 original size:69 final size:69
Alignment explanation
Indices: 8854356--8854591 Score: 221
Period size: 69 Copynumber: 3.4 Consensus size: 69
8854346 ATGGTTAGCG
** * *
8854356 TGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAA
1 TGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTGACACGCCATGTACAAA
8854421 AACA
66 AACA
* *
8854425 TGTGGCACGCCATGTACAAAAACCTGTGACAAGCTATGGTTAACGTGTGACACGCCATGTACAAA
1 TGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTGACACGCCATGTACAAA
* *
8854490 AGCC
66 AACA
* * * ** * * * *
8854494 TGTGACAAGTCATGGT--TAGTA--TGTTACACGCCAT-GTACAAAAACCTGTGACACGCCATGT
1 TGTGACACGCCAT-GTACAAAAACCTGTGACAAGCCATGGT----TAACGTGTGACACGCCATGT
*
8854554 ACAAAAACC
61 ACAAAAACA
*
8854563 TATGACACGCCATGTACAAAAACCTGTGA
1 TGTGACACGCCATGTACAAAAACCTGTGA
8854592 AACTTCAAAT
Statistics
Matches: 131, Mismatches: 27, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
65 2 0.02
66 10 0.08
68 4 0.03
69 107 0.82
70 4 0.03
72 4 0.03
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.22
Consensus pattern (69 bp):
TGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTGACACGCCATGTACAAA
AACA
Found at i:8854446 original size:114 final size:113
Alignment explanation
Indices: 8854246--8854576 Score: 502
Period size: 114 Copynumber: 2.9 Consensus size: 113
8854236 CTATGATGTT
* * *
8854246 ACACGCCATGTACAAAAATCTATGACAAGCCATGGTTAGCGTGTTACACG-TCATGTACAAAAAT
1 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCT-ATGTACAAAAA-
* *
8854310 CTATGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTG
64 CTGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTG
8854360 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAACA
1 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAAC-
* *
8854425 TGTGGCACGCCATGTACAAAAACCTGTGACAAGCTATGGTTAACGTGTG
65 TGTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTG
* * * *
8854474 ACACGCCATGTACAAAAGCCTGTGACAAGTCATGGTTAGTATGTTACACGCCATGTACAAAAACC
1 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAA-C
* *
8854539 TGTGACACGCCATGTACAAAAACCTATGACACGCCATG
65 TGTGACACGCCATGTACAAAAACCTGTGACAAGCCATG
8854577 TACAAAAACC
Statistics
Matches: 199, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
113 1 0.01
114 196 0.98
115 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (113 bp):
ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTTACACGCTATGTACAAAAACT
GTGACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAACGTGTG
Found at i:8854479 original size:45 final size:45
Alignment explanation
Indices: 8854421--8854591 Score: 184
Period size: 45 Copynumber: 3.7 Consensus size: 45
8854411 TATGTACAAA
*
8854421 AACATGTGGCACGCCATGTACAAAAACCTGTGACAAGCTATGGTT
1 AACATGTGACACGCCATGTACAAAAACCTGTGACAAGCTATGGTT
* *
8854466 AACGTGTGACACGCCATGTACAAAAGCCTGTGACAAG-TCATGGTT
1 AACATGTGACACGCCATGTACAAAAACCTGTGACAAGCT-ATGGTT
** * * * *
8854511 AGTATGTTACACGCCATGTACAAAAACCTGTGACACGCCAT-GTACAAA
1 AACATGTGACACGCCATGTACAAAAACCTGTGACAAGCTATGGT----T
* *
8854559 AACCTATGACACGCCATGTACAAAAACCTGTGA
1 AACATGTGACACGCCATGTACAAAAACCTGTGA
8854592 AACTTCAAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
44 3 0.03
45 73 0.70
48 28 0.27
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (45 bp):
AACATGTGACACGCCATGTACAAAAACCTGTGACAAGCTATGGTT
Found at i:8855266 original size:31 final size:31
Alignment explanation
Indices: 8855228--8855318 Score: 155
Period size: 31 Copynumber: 2.9 Consensus size: 31
8855218 ATTTTCTCTT
8855228 TACGTTATATGCATGGCGTGTTACCACATTC
1 TACGTTATATGCATGGCGTGTTACCACATTC
*
8855259 TACGTTATATGCATGGCATGTTACCACATTC
1 TACGTTATATGCATGGCGTGTTACCACATTC
* *
8855290 TACGTTATATGCATGGTGTGTTACAACAT
1 TACGTTATATGCATGGCGTGTTACCACAT
8855319 GACTGACAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (31 bp):
TACGTTATATGCATGGCGTGTTACCACATTC
Found at i:8859114 original size:118 final size:118
Alignment explanation
Indices: 8858906--8859296 Score: 507
Period size: 118 Copynumber: 3.3 Consensus size: 118
8858896 TAATCTAAAC
* * * * * *
8858906 TGACACGCTGAGGGCACGCAGATTTTTGTCGTGACACGTTGACTTCTTACAGTATTGTTGGGTGA
1 TGACACGCTGAGGGCATGCAGATTTCTGTGGTGACACGTTGACTTCTTGCAGTATTATAGGGTGA
* * ** **
8858971 C-TCGGCATGCCCCATATTGTGGTGACATGCTGAGTGGAACCAGATTGTCT-GCG
66 CAT-GGCACGCCCCATCTTGTGGTGACACACTGAGTGGAACCAGATACT-TGGCG
* *
8859024 TGACACGCTGAGGGCATGCAAATTTCTGTGGTGACACGTTGACTTCTTGCAGTATTATGGGGTGA
1 TGACACGCTGAGGGCATGCAGATTTCTGTGGTGACACGTTGACTTCTTGCAGTATTATAGGGTGA
* *
8859089 CATGGCACGACCCATCTTGTGGTGACACACTGAGTGGAACCAAATACTTGGCG
66 CATGGCACGCCCCATCTTGTGGTGACACACTGAGTGGAACCAGATACTTGGCG
* * ** *
8859142 TGACACGCTGAGTGCATGCAGATTTCTGTGGTGACACGCTGACTTCTTGTTGTATTCTAGGGTGA
1 TGACACGCTGAGGGCATGCAGATTTCTGTGGTGACACGTTGACTTCTTGCAGTATTATAGGGTGA
* * *
8859207 CACGGCACTCCCCATCTTGTGGTGACACACTGAGTGGAACCAGATACTTGGCA
66 CATGGCACGCCCCATCTTGTGGTGACACACTGAGTGGAACCAGATACTTGGCG
* * *
8859260 TGACACGCTGAGTGCATGCATATTTCTGTAGTGACAC
1 TGACACGCTGAGGGCATGCAGATTTCTGTGGTGACAC
8859297 ACTGAATGGA
Statistics
Matches: 242, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
117 1 0.00
118 240 0.99
119 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (118 bp):
TGACACGCTGAGGGCATGCAGATTTCTGTGGTGACACGTTGACTTCTTGCAGTATTATAGGGTGA
CATGGCACGCCCCATCTTGTGGTGACACACTGAGTGGAACCAGATACTTGGCG
Found at i:8859271 original size:31 final size:31
Alignment explanation
Indices: 8859229--8859327 Score: 85
Period size: 31 Copynumber: 3.2 Consensus size: 31
8859219 CATCTTGTGG
8859229 TGACACACTGAGTGGAACCAGATACTTGGCA
1 TGACACACTGAGTGGAACCAGATACTTGGCA
* * ** * * *
8859260 TGACACGCTGAGTGCATGC--ATATTTCTGTA
1 TGACACACTGAGTGGAACCAGATACTT-GGCA
* *
8859290 GTGACACACTGAATGGAACTAGATACTTGGCA
1 -TGACACACTGAGTGGAACCAGATACTTGGCA
8859322 TGACAC
1 TGACAC
8859328 GCTAACTTGT
Statistics
Matches: 48, Mismatches: 16, Indels: 8
0.67 0.22 0.11
Matches are distributed among these distances:
29 5 0.10
30 2 0.04
31 34 0.71
32 2 0.04
33 5 0.10
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (31 bp):
TGACACACTGAGTGGAACCAGATACTTGGCA
Found at i:8861245 original size:26 final size:25
Alignment explanation
Indices: 8861215--8861264 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
8861205 AAAAGAACAA
* *
8861215 GAAAATACAAGAAAAAATTGAAAAAT
1 GAAAAAACAACAAAAAA-TGAAAAAT
*
8861241 GAAAAAATAACAAAAAATGAAAAA
1 GAAAAAACAACAAAAAATGAAAAA
8861265 ATGCACAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.74, C:0.04, G:0.10, T:0.12
Consensus pattern (25 bp):
GAAAAAACAACAAAAAATGAAAAAT
Found at i:8869272 original size:20 final size:20
Alignment explanation
Indices: 8869231--8869274 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
8869221 TTTCACTTCT
* *
8869231 AAATCATACTTCAATTACTC
1 AAATCATACTCCAATAACTC
*
8869251 AAATCATACTCCAATAAGTC
1 AAATCATACTCCAATAACTC
8869271 AAAT
1 AAAT
8869275 GGGGCCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATCATACTCCAATAACTC
Found at i:8869766 original size:4 final size:4
Alignment explanation
Indices: 8869759--8869790 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
8869749 ATGATAAAAA
8869759 AAAT AAAT AAAT AAAT AAAT AAAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAA
8869791 AATAAACTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:8872862 original size:104 final size:104
Alignment explanation
Indices: 8872732--8872940 Score: 402
Period size: 104 Copynumber: 2.0 Consensus size: 104
8872722 TGAATTGTGA
8872732 TGCTTGATCTTGAACTTGGCATAAACCTCTTTCATCATTGAACCATTGAGGTTACTAGCGTTATC
1 TGCTTGATCTTGAACTTGGCATAAACCTCTTTCATCATTGAACCATTGAGGTTACTAGCGTTATC
8872797 TGTGATGATCCTTTTCGGGAGACCATA-GGGCATATTAT
66 TGTGATGATCCTTTTCGGGAGACCATAGGGGCATATTAT
8872835 TNGCTTGATCTTGAACTTGGCATAAACCTCTTTCATCATTGAACCATTGAGGTTACTAGCGTTAT
1 T-GCTTGATCTTGAACTTGGCATAAACCTCTTTCATCATTGAACCATTGAGGTTACTAGCGTTAT
8872900 CTGTGATGATCCTTTTCGGGAGACCATAGGGGCATATTAT
65 CTGTGATGATCCTTTTCGGGAGACCATAGGGGCATATTAT
8872940 T
1 T
8872941 TCTTTTTGGA
Statistics
Matches: 104, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
103 1 0.01
104 91 0.88
105 12 0.12
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (104 bp):
TGCTTGATCTTGAACTTGGCATAAACCTCTTTCATCATTGAACCATTGAGGTTACTAGCGTTATC
TGTGATGATCCTTTTCGGGAGACCATAGGGGCATATTAT
Found at i:8879806 original size:21 final size:20
Alignment explanation
Indices: 8879772--8879810 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8879762 TAGATATCCA
* *
8879772 ATTACATCATTATCTAAAACC
1 ATTACATAACTATC-AAAACC
8879793 ATTACATAACTATCAAAA
1 ATTACATAACTATCAAAA
8879811 GGAAAAACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31
Consensus pattern (20 bp):
ATTACATAACTATCAAAACC
Found at i:8883535 original size:18 final size:18
Alignment explanation
Indices: 8883505--8883549 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8883495 GTGAACAAGA
8883505 ATTTTATTATTTTT-TACT
1 ATTTT-TTATTTTTATACT
*
8883523 ATTTTTTATTTTTATATT
1 ATTTTTTATTTTTATACT
*
8883541 ATTTATTAT
1 ATTTTTTAT
8883550 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTTTATTTTTATACT
Found at i:8883535 original size:26 final size:25
Alignment explanation
Indices: 8883506--8883589 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 25
8883496 TGAACAAGAA
* *
8883506 TTTTATTATTTTTTACTATTTTTTAT
1 TTTTA-TATTTTTTATTATTTATTAT
* *
8883532 TTTTATATTATTTATTATATATT-T
1 TTTTATATTTTTTATTATTTATTAT
8883556 TTTTATATTTTGATTATTATATTATTAT
1 TTTTATATTTT--TTATTAT-TTATTAT
*
8883584 TATTAT
1 TTTTAT
8883590 TTTGAAGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
24 11 0.23
25 14 0.30
26 12 0.26
27 4 0.09
28 6 0.13
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTTATATTTTTTATTATTTATTAT
Found at i:8883554 original size:14 final size:14
Alignment explanation
Indices: 8883509--8883589 Score: 57
Period size: 14 Copynumber: 5.9 Consensus size: 14
8883499 ACAAGAATTT
8883509 TATTATTT-TT-TA
1 TATTATTTATTATA
* *
8883521 CTATTTTTTATTTTTA
1 -TATTATTTA-TTATA
8883537 TATTATTTATTATA
1 TATTATTTATTATA
8883551 TATT-TTT-TTATA
1 TATTATTTATTATA
*
8883563 TTTTGA-TTATTATA
1 TATT-ATTTATTATA
8883577 TTATTA-TTATTAT
1 -TATTATTTATTAT
8883590 TTTGAAGATT
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
12 8 0.14
13 12 0.21
14 21 0.38
15 13 0.23
16 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (14 bp):
TATTATTTATTATA
Found at i:8883576 original size:38 final size:38
Alignment explanation
Indices: 8883508--8883592 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 38
8883498 AACAAGAATT
* *
8883508 TTATTA-TTTTTTACTATTTTTTATTTTTATATTATTTA
1 TTATTATTTTTTTACTATTTTTGATTATTATATTA-TTA
8883546 TTATATATTTTTTTA-TA-TTTTGATTATTATATTATTA
1 TTAT-TATTTTTTTACTATTTTTGATTATTATATTATTA
8883583 TTATTATTTT
1 TTATTATTTT
8883593 GAAGATTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
36 6 0.14
37 7 0.16
38 19 0.44
39 4 0.09
40 7 0.16
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (38 bp):
TTATTATTTTTTTACTATTTTTGATTATTATATTATTA
Found at i:8885232 original size:12 final size:13
Alignment explanation
Indices: 8885204--8885237 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8885194 TCTAATTCAT
8885204 TTTTTGTTTATAA
1 TTTTTGTTTATAA
**
8885217 TTTTTGTTTATGT
1 TTTTTGTTTATAA
8885230 TTTTTGTT
1 TTTTTGTT
8885238 AAAAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (13 bp):
TTTTTGTTTATAA
Found at i:8885473 original size:25 final size:26
Alignment explanation
Indices: 8885430--8885481 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
8885420 TTACGACATT
*
8885430 CATCCACTTCTAGTGGT-AAATTATC
1 CATCCACTTCTAGTAGTAAAATTATC
8885455 CATCCACTTCTTA-TAGTAAAATTATC
1 CATCCACTTC-TAGTAGTAAAATTATC
8885481 C
1 C
8885482 TTAAATTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.37
Consensus pattern (26 bp):
CATCCACTTCTAGTAGTAAAATTATC
Found at i:8885515 original size:25 final size:25
Alignment explanation
Indices: 8885460--8885529 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 25
8885450 TTATCCATCC
* *
8885460 ACTTCTTATAGTAAAATTATCCTTA
1 ACTTCTGATAGTAAAATTATCATTA
* *
8885485 AATTCTGATAGTAAAATTATTATCT-
1 ACTTCTGATAGTAAAATTATCAT-TA
*
8885510 ACTTCTGGT-GATAAAATTAT
1 ACTTCTGATAG-TAAAATTAT
8885530 AAATAGAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (25 bp):
ACTTCTGATAGTAAAATTATCATTA
Found at i:8885653 original size:59 final size:59
Alignment explanation
Indices: 8885585--8885698 Score: 174
Period size: 59 Copynumber: 1.9 Consensus size: 59
8885575 TTTCATATCC
* * * *
8885585 ATGATCATAATTATTAAATAATGTGGTATTCACTTCAAGGAATAGATAGATTTATGACT
1 ATGACCATAATTATTAAATAATGTCGCATTCACTTCAAGGAATAGATAAATTTATGACT
* *
8885644 ATGACCATAATTATTAAATGATGTCGCATTCACTTCAGGGAATAGATAAATTTAT
1 ATGACCATAATTATTAAATAATGTCGCATTCACTTCAAGGAATAGATAAATTTAT
8885699 AATTTTTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.36
Consensus pattern (59 bp):
ATGACCATAATTATTAAATAATGTCGCATTCACTTCAAGGAATAGATAAATTTATGACT
Found at i:8886154 original size:23 final size:23
Alignment explanation
Indices: 8886116--8886162 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8886106 GTTATGAAAA
8886116 ATAACTTAAAAAAATAAATAAAG
1 ATAACTTAAAAAAATAAATAAAG
* * *
8886139 ATAACTTGAAAGAATAATTAAAG
1 ATAACTTAAAAAAATAAATAAAG
8886162 A
1 A
8886163 GAAAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (23 bp):
ATAACTTAAAAAAATAAATAAAG
Found at i:8894468 original size:21 final size:20
Alignment explanation
Indices: 8894439--8894479 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
8894429 AATTAAGTGG
8894439 TTTTAGTTTAATTTTACTTTA
1 TTTTAGTTTAA-TTTACTTTA
*
8894460 TTTTGGTTTAATTTACTTTA
1 TTTTAGTTTAATTTACTTTA
8894480 AGAAGAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.22, C:0.05, G:0.07, T:0.66
Consensus pattern (20 bp):
TTTTAGTTTAATTTACTTTA
Found at i:8895264 original size:24 final size:24
Alignment explanation
Indices: 8895210--8895257 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
8895200 GATTTTCACA
8895210 GATTTTAACATGTAATTTGAATAT
1 GATTTTAACATGTAATTTGAATAT
*
8895234 GATTTTAGCATGTAATTTGAATAT
1 GATTTTAACATGTAATTTGAATAT
8895258 TTGTTTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (24 bp):
GATTTTAACATGTAATTTGAATAT
Found at i:8897876 original size:2 final size:2
Alignment explanation
Indices: 8897869--8897903 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8897859 AAACCCATTA
8897869 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8897904 NNNNNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8901070 original size:8 final size:8
Alignment explanation
Indices: 8901057--8901082 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8901047 GCTTAGCTTA
8901057 TATATATT
1 TATATATT
8901065 TATATATT
1 TATATATT
8901073 TATATATT
1 TATATATT
8901081 TA
1 TA
8901083 CATTATATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATATT
Found at i:8908226 original size:16 final size:17
Alignment explanation
Indices: 8908196--8908259 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 17
8908186 AAAGTGATAG
8908196 ATTTTTCA-AATAAAAT
1 ATTTTTCATAATAAAAT
*
8908212 ATTTTTCATAA-AAAAA
1 ATTTTTCATAATAAAAT
8908228 ATTTCCTTTCAATAAGTAAAAT
1 A-TT--TTTC-ATAA-TAAAAT
8908250 ATTTTTCATA
1 ATTTTTCATA
8908260 GAAAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
16 13 0.33
17 4 0.10
18 3 0.08
19 8 0.21
20 4 0.10
21 2 0.05
22 5 0.13
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTTTTCATAATAAAAT
Found at i:8908267 original size:19 final size:18
Alignment explanation
Indices: 8908207--8908272 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
8908197 TTTTTCAAAT
8908207 AAAATATTTTTCATAAAA
1 AAAATATTTTTCATAAAA
**
8908225 AAAAT-TTCCTTTCAATAAGT
1 AAAATATT--TTTC-ATAAAA
8908245 AAAATATTTTTCATAGAAA
1 AAAATATTTTTCATA-AAA
*
8908264 AAAAAATTT
1 AAAATATTT
8908273 CTTTTATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
17 2 0.05
18 8 0.21
19 17 0.45
20 9 0.24
21 2 0.05
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.38
Consensus pattern (18 bp):
AAAATATTTTTCATAAAA
Found at i:8911302 original size:16 final size:17
Alignment explanation
Indices: 8911278--8911317 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
8911268 TTTTATAAAT
8911278 TAATATTTAATTAA-TAA
1 TAAT-TTTAATTAAGTAA
8911295 TAATTTTAATTAAGTAA
1 TAATTTTAATTAAGTAA
8911312 T-ATTTT
1 TAATTTT
8911318 TTATCAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TAATTTTAATTAAGTAA
Found at i:8911395 original size:13 final size:14
Alignment explanation
Indices: 8911369--8911401 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8911359 TTGTTAAATT
8911369 TATAAAATAATATA
1 TATAAAATAATATA
*
8911383 TTTAAAA-AATATA
1 TATAAAATAATATA
8911396 TATAAA
1 TATAAA
8911402 TCTCACTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TATAAAATAATATA
Found at i:8911396 original size:15 final size:16
Alignment explanation
Indices: 8911366--8911398 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8911356 AATTTGTTAA
*
8911366 ATTTATAAAATAATAT
1 ATTTAAAAAATAATAT
8911382 ATTTAAAAAAT-ATAT
1 ATTTAAAAAATAATAT
8911397 AT
1 AT
8911399 AAATCTCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTTAAAAAATAATAT
Found at i:8911747 original size:16 final size:16
Alignment explanation
Indices: 8911723--8911802 Score: 66
Period size: 16 Copynumber: 5.3 Consensus size: 16
8911713 AATAAATTAT
*
8911723 TAATTTATCGATTAAA
1 TAATATATCGATTAAA
8911739 TAATATATCGA-TAAA
1 TAATATATCGATTAAA
*
8911754 TTAATA-A---ATT-AT
1 -TAATATATCGATTAAA
*
8911766 TAATTTATCGATTAAA
1 TAATATATCGATTAAA
8911782 TAATATATCGA-TAAA
1 TAATATATCGATTAAA
8911797 TTAATA
1 -TAATA
8911803 AATTTTTATG
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
11 4 0.08
12 3 0.06
13 1 0.02
15 12 0.24
16 31 0.61
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (16 bp):
TAATATATCGATTAAA
Found at i:8911753 original size:43 final size:43
Alignment explanation
Indices: 8911706--8911806 Score: 202
Period size: 43 Copynumber: 2.3 Consensus size: 43
8911696 TAATTAATGC
8911706 ATAAATTAATAAATTATTAATTTATCGATTAAATAATATATCG
1 ATAAATTAATAAATTATTAATTTATCGATTAAATAATATATCG
8911749 ATAAATTAATAAATTATTAATTTATCGATTAAATAATATATCG
1 ATAAATTAATAAATTATTAATTTATCGATTAAATAATATATCG
8911792 ATAAATTAATAAATT
1 ATAAATTAATAAATT
8911807 TTTATGATCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (43 bp):
ATAAATTAATAAATTATTAATTTATCGATTAAATAATATATCG
Found at i:8912690 original size:26 final size:26
Alignment explanation
Indices: 8912650--8912790 Score: 121
Period size: 26 Copynumber: 5.6 Consensus size: 26
8912640 TAACTTTGGG
* *
8912650 CATTGCGTGACTAGTTTTTTATAAGA
1 CATTGCGTGACTAGTTTCTGATAAGA
* *
8912676 CATTGCGTGATTAGTTTCTGATAAGG
1 CATTGCGTGACTAGTTTCTGATAAGA
* ** *
8912702 TATTGCGTGACTAACTT-TG----GG
1 CATTGCGTGACTAGTTTCTGATAAGA
* * *
8912723 CATTGCATGACTAGTTTTTGATAAGG
1 CATTGCGTGACTAGTTTCTGATAAGA
*
8912749 CATTGCGTGACTAGTTTCTGATAAGG
1 CATTGCGTGACTAGTTTCTGATAAGA
* *
8912775 CATTGCATGACCAGTT
1 CATTGCGTGACTAGTT
8912791 GATAGGCATT
Statistics
Matches: 94, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
21 15 0.16
22 2 0.02
25 2 0.02
26 75 0.80
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (26 bp):
CATTGCGTGACTAGTTTCTGATAAGA
Found at i:8912713 original size:73 final size:73
Alignment explanation
Indices: 8912628--8912785 Score: 262
Period size: 73 Copynumber: 2.2 Consensus size: 73
8912618 TAGTTTTTAA
* * *
8912628 GCATTGCGTGACTAACTTTGGGCATTGCGTGACTAGTTTTTTATAAGACATTGCGTGATTAGTTT
1 GCATTGCGTGACTAACTTTGGGCATTGCATGACTAGTTTTTGATAAGACATTGCGTGACTAGTTT
8912693 CTGATAAG
66 CTGATAAG
* *
8912701 GTATTGCGTGACTAACTTTGGGCATTGCATGACTAGTTTTTGATAAGGCATTGCGTGACTAGTTT
1 GCATTGCGTGACTAACTTTGGGCATTGCATGACTAGTTTTTGATAAGACATTGCGTGACTAGTTT
8912766 CTGATAAG
66 CTGATAAG
*
8912774 GCATTGCATGAC
1 GCATTGCGTGAC
8912786 CAGTTGATAG
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 78 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (73 bp):
GCATTGCGTGACTAACTTTGGGCATTGCATGACTAGTTTTTGATAAGACATTGCGTGACTAGTTT
CTGATAAG
Found at i:8912828 original size:23 final size:23
Alignment explanation
Indices: 8912744--8912855 Score: 93
Period size: 23 Copynumber: 4.8 Consensus size: 23
8912734 TAGTTTTTGA
* *
8912744 TAAGGCATTGCGTGACTAGTTTCTG
1 TAAGGCATTGCGTGACTTG-TT-AG
* **
8912769 ATAAGGCATTGCATGACCAGTT-G
1 -TAAGGCATTGCGTGACTTGTTAG
8912792 -ATAGGCATTGCGTGACTTGTTAG
1 TA-AGGCATTGCGTGACTTGTTAG
* * *
8912815 TAAGGCATTACGTGACTAGTTCG
1 TAAGGCATTGCGTGACTTGTTAG
*
8912838 TAAGGCATTGTGTGACTT
1 TAAGGCATTGCGTGACTT
8912856 AGGCATTGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.01
22 16 0.22
23 35 0.49
24 1 0.01
25 2 0.03
26 17 0.24
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (23 bp):
TAAGGCATTGCGTGACTTGTTAG
Found at i:8912898 original size:22 final size:21
Alignment explanation
Indices: 8912866--8912942 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
8912856 AGGCATTGCT
* *
8912866 TAAAAATTAGTCATGTAATGTA
1 TAAAAACTAGTCACGTAATG-A
*
8912888 TAAAAACTAGTCACGTAATGCC
1 TAAAAACTAGTCACGTAATG-A
* *
8912910 T-AAAACCAGTCACATAATGA
1 TAAAAACTAGTCACGTAATGA
8912930 CTAAAAACTAGTC
1 -TAAAAACTAGTC
8912943 GCACGGTGAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.38
22 28 0.62
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (21 bp):
TAAAAACTAGTCACGTAATGA
Found at i:8912920 original size:21 final size:21
Alignment explanation
Indices: 8912890--8912935 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
8912880 GTAATGTATA
* * *
8912890 AAAACTAGTCACGTAATGCCT
1 AAAACCAGTCACATAATGACT
8912911 AAAACCAGTCACATAATGACT
1 AAAACCAGTCACATAATGACT
8912932 AAAA
1 AAAA
8912936 ACTAGTCGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.22, G:0.11, T:0.20
Consensus pattern (21 bp):
AAAACCAGTCACATAATGACT
Found at i:8913992 original size:14 final size:13
Alignment explanation
Indices: 8913973--8914021 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 13
8913963 ACAACTATTT
*
8913973 GAAATTGCTACATA
1 GAAATTG-TCCATA
8913987 GAAATTAGTCCATA
1 GAAATT-GTCCATA
*
8914001 GAAATTATCCATA
1 GAAATTGTCCATA
8914014 GAAATTGT
1 GAAATTGT
8914022 TAGANNNNNN
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 13 0.42
14 17 0.55
15 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (13 bp):
GAAATTGTCCATA
Found at i:8914013 original size:13 final size:14
Alignment explanation
Indices: 8913983--8914019 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
8913973 GAAATTGCTA
8913983 CATAGAAATTAGTC
1 CATAGAAATTAGTC
8913997 CATAGAAATTA-TC
1 CATAGAAATTAGTC
8914010 CATAGAAATT
1 CATAGAAATT
8914020 GTTAGANNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (14 bp):
CATAGAAATTAGTC
Found at i:8923734 original size:37 final size:36
Alignment explanation
Indices: 8923662--8923740 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 36
8923652 AGGATGAATG
*
8923662 TGGATGATAGAAAGCCCACTTTGTAAATGCTTGAGAA
1 TGGATGATAGAAAGCCCACTTTGAAAATGC-TGAGAA
*
8923699 TGGATGATAGAAAGCCCACTTGTAGAAAATG-TGAGAG
1 TGGATGATAGAAAGCCCACTT-T-GAAAATGCTGAGAA
8923736 TGGAT
1 TGGAT
8923741 AAGTAAGTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
37 31 0.82
38 1 0.03
39 6 0.16
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.25
Consensus pattern (36 bp):
TGGATGATAGAAAGCCCACTTTGAAAATGCTGAGAA
Found at i:8926656 original size:21 final size:21
Alignment explanation
Indices: 8926632--8926672 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8926622 TTGACTTTAC
8926632 ACAGACATAGTCGACTATAGA
1 ACAGACATAGTCGACTATAGA
* *
8926653 ACAGGCATAGTTGACTATAG
1 ACAGACATAGTCGACTATAG
8926673 CAGCTCAGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (21 bp):
ACAGACATAGTCGACTATAGA
Found at i:8930936 original size:20 final size:20
Alignment explanation
Indices: 8930911--8930956 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
8930901 TTTTGGCCTC
8930911 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
8930931 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
8930951 ATTTGA
1 ATTTGA
8930957 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:8931032 original size:28 final size:27
Alignment explanation
Indices: 8931001--8931053 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
8930991 TTTGGACTAT
*
8931001 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
8931029 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
8931054 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:8931059 original size:28 final size:28
Alignment explanation
Indices: 8931001--8931059 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
8930991 TTTGGACTAT
* *
8931001 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
8931029 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
8931057 AGG
1 AGG
8931060 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:8938630 original size:38 final size:40
Alignment explanation
Indices: 8938588--8938690 Score: 140
Period size: 38 Copynumber: 2.6 Consensus size: 40
8938578 ATAGTGTTTG
* *
8938588 TGTGCACGATGTGGGGGGATGTACACGGT-G-GCACTGAT-
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGC-CGGATA
* *
8938626 TGTGCACGATGTGGGGGGATGCACACGATGGTGCCGGCTA
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGCCGGATA
8938666 TGTGCACGATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
8938691 TGAGCCGGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 27 0.47
39 4 0.07
40 26 0.46
ACGTcount: A:0.18, C:0.17, G:0.43, T:0.22
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGTGCCGGATA
Found at i:8955027 original size:27 final size:27
Alignment explanation
Indices: 8954997--8955064 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
8954987 TAGTTCAATA
* *
8954997 TATCTATCTACTTTCGGTGGTTAAATG
1 TATCCATCCACTTTCGGTGGTTAAATG
8955024 TATCCATCCACTTTCGGTGGTTAAATG
1 TATCCATCCACTTTCGGTGGTTAAATG
8955051 TATCCATCCACTTT
1 TATCCATCCACTTT
8955065 TGGTAGTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (27 bp):
TATCCATCCACTTTCGGTGGTTAAATG
Found at i:8956228 original size:15 final size:15
Alignment explanation
Indices: 8956201--8956243 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
8956191 ATTTTACTTT
8956201 TTTTATCATTTTTGTA
1 TTTTAT-ATTTTTGTA
*
8956217 TTTTATATTTTTTTA
1 TTTTATATTTTTGTA
8956232 TTATTATTATTT
1 TT-TTA-TATTT
8956244 ATTATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 10 0.42
16 9 0.38
17 5 0.21
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTTATATTTTTGTA
Found at i:8956246 original size:28 final size:26
Alignment explanation
Indices: 8956193--8956266 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
8956183 AATTTTAAAT
*
8956193 TTTACTTTTTTTATCATTTTTGTATT-
1 TTTA-TTTTTTTATTATTTTTGTATTA
*
8956219 TTATATTTTTTTATTATTATTATTTATTA
1 TT-TATTTTTTTATTATT-TT-TGTATTA
*
8956248 TTTATTTTTCTATTTATTT
1 TTTATTTTTTTA-TTATTT
8956267 AATGTCATGC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 14 0.35
27 4 0.10
28 15 0.38
29 7 0.17
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.74
Consensus pattern (26 bp):
TTTATTTTTTTATTATTTTTGTATTA
Found at i:8956264 original size:16 final size:14
Alignment explanation
Indices: 8956225--8956267 Score: 52
Period size: 13 Copynumber: 3.0 Consensus size: 14
8956215 TATTTTATAT
8956225 TTTTTTATTA-TTA
1 TTTTTTATTATTTA
*
8956238 TTATTTATTATTTA
1 TTTTTTATTATTTA
8956252 TTTTTCTATTTATTTA
1 TTTTT-TA-TTATTTA
8956268 ATGTCATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 7 0.28
15 2 0.08
16 7 0.28
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTATTATTTA
Found at i:8957062 original size:10 final size:10
Alignment explanation
Indices: 8957049--8957078 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8957039 TATTTTCGTA
8957049 TTTTTTTTAT
1 TTTTTTTTAT
8957059 TTTTTTTTAT
1 TTTTTTTTAT
*
8957069 TATTTTTTAT
1 TTTTTTTTAT
8957079 GATATTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:8957608 original size:38 final size:38
Alignment explanation
Indices: 8957566--8957681 Score: 205
Period size: 38 Copynumber: 3.1 Consensus size: 38
8957556 ATCTGCTATC
* *
8957566 CCTTTGCCCAAATCGGGCTCTCCCTCCACCTATCTCTT
1 CCTTTGCCCAAATCGAGCTCTCCCTCCACCGATCTCTT
8957604 CCTTTGCCCAAATCGAGCTCTCCCTCCACCGATCTCTT
1 CCTTTGCCCAAATCGAGCTCTCCCTCCACCGATCTCTT
*
8957642 CCTTTGCCCAAATCGAGCTCTCCCTCTACCGATCTCTT
1 CCTTTGCCCAAATCGAGCTCTCCCTCCACCGATCTCTT
8957680 CC
1 CC
8957682 CACCTCCAGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 75 1.00
ACGTcount: A:0.15, C:0.45, G:0.10, T:0.30
Consensus pattern (38 bp):
CCTTTGCCCAAATCGAGCTCTCCCTCCACCGATCTCTT
Found at i:8957764 original size:175 final size:175
Alignment explanation
Indices: 8957473--8957816 Score: 514
Period size: 175 Copynumber: 2.0 Consensus size: 175
8957463 GCCGACCAAC
* * * * *
8957473 CCCAAATCGGGCTCCCCCTCTACCGGTCTCTTCCTACCATCGGCCAATAGCCCACGTCGGACCTC
1 CCCAAATCGAGCTCCCCCTCTACCGATCTCTTCCCACCATCAGCCAATAGCCCACGCCGGACCTC
* * *
8957538 CTTCTGCCTGCTGCCTAGATCTGCTATCCCTTTGCCCAAATCGGGCTCTCCCTCCACCT-ATCTC
66 CCTCTGCCGGCTGCCTAGATCTGCTATCCCTTTGCCCAAATCGGGCTCTCCCTCCA-CTGAACTC
*
8957602 TTCCTTTGCCCAAATCGAGC-TCTCCCTCCACCGATCTCTTCCTTTG
130 TTCCTTTACCCAAATCG-GCATCTCCCTCCACCGATCTCTTCCTTTG
*
8957648 CCCAAATCGAGCTCTCCCTCTACCGATCTCTTCCCACC-TCCAGCCAATAGCCCACGCCGGACCT
1 CCCAAATCGAGCTCCCCCTCTACCGATCTCTTCCCACCAT-CAGCCAATAGCCCACGCCGGACCT
* * *
8957712 CCCTCTGTCGGCTGCCTAGATCTGCTCTCCCTTTGCCCAAATCGGGCTCTCCCTCTACTGAACTC
65 CCCTCTGCCGGCTGCCTAGATCTGCTATCCCTTTGCCCAAATCGGGCTCTCCCTCCACTGAACTC
*
8957777 TTCCTTTACCCAAATCGGCATCTCCCTCTACCGATCTCTT
130 TTCCTTTACCCAAATCGGCATCTCCCTCCACCGATCTCTT
8957817 TCTACCATCG
Statistics
Matches: 152, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
174 5 0.03
175 147 0.97
ACGTcount: A:0.15, C:0.44, G:0.14, T:0.27
Consensus pattern (175 bp):
CCCAAATCGAGCTCCCCCTCTACCGATCTCTTCCCACCATCAGCCAATAGCCCACGCCGGACCTC
CCTCTGCCGGCTGCCTAGATCTGCTATCCCTTTGCCCAAATCGGGCTCTCCCTCCACTGAACTCT
TCCTTTACCCAAATCGGCATCTCCCTCCACCGATCTCTTCCTTTG
Found at i:8957792 original size:38 final size:38
Alignment explanation
Indices: 8957736--8957816 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
8957726 CCTAGATCTG
* * *
8957736 CTCTCCCTTTGCCCAAATCGGGC-TCTCCCTCTACTGAA
1 CTCTTCCTTTACCCAAATC-GGCATCTCCCTCTACCGAA
*
8957774 CTCTTCCTTTACCCAAATCGGCATCTCCCTCTACCGAT
1 CTCTTCCTTTACCCAAATCGGCATCTCCCTCTACCGAA
8957812 CTCTT
1 CTCTT
8957817 TCTACCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 3 0.08
38 35 0.92
ACGTcount: A:0.16, C:0.42, G:0.10, T:0.32
Consensus pattern (38 bp):
CTCTTCCTTTACCCAAATCGGCATCTCCCTCTACCGAA
Found at i:8957850 original size:137 final size:137
Alignment explanation
Indices: 8957599--8957866 Score: 387
Period size: 137 Copynumber: 2.0 Consensus size: 137
8957589 CTCCACCTAT
* * *
8957599 CTCTTCCTTTGCCCAAATCGAGCTCTCCCTCCACCGATCTCTTCCTTTGCCCAAATCGAGCTCTC
1 CTCTCCCTTTGCCCAAATCGAGCTCTCCCTCCACCGAACTCTTCCTTTACCCAAATCGAGCTCTC
*
8957664 CCTCTACCGATCTCTTCCCACCTCCAGCCAATAGCCCACGCCGGACCTCCCTCTGTCGGCTGCCT
66 CCTCTACCGATCTCTTCCCACCTCCAGCCAATAGCCCACGCCGGACCTCCCTCTGTCAGCTGCCT
8957729 AGATCTG
131 AGATCTG
* * *
8957736 CTCTCCCTTTGCCCAAATCGGGCTCTCCCTCTACTGAACTCTTCCTTTACCCAAATCG-GCATCT
1 CTCTCCCTTTGCCCAAATCGAGCTCTCCCTCCACCGAACTCTTCCTTTACCCAAATCGAGC-TCT
* * * ** *
8957800 CCCTCTACCGATCTCTTTCTACCATCGA-CCGCTAGCCCACGCCGGACCTCCCTCTGTCAGTTGC
65 CCCTCTACCGATCTCTTCCCACC-TCCAGCCAATAGCCCACGCCGGACCTCCCTCTGTCAGCTGC
8957864 CTA
129 CTA
8957867 TTTTCTTATT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
136 2 0.02
137 111 0.96
138 3 0.03
ACGTcount: A:0.16, C:0.44, G:0.13, T:0.27
Consensus pattern (137 bp):
CTCTCCCTTTGCCCAAATCGAGCTCTCCCTCCACCGAACTCTTCCTTTACCCAAATCGAGCTCTC
CCTCTACCGATCTCTTCCCACCTCCAGCCAATAGCCCACGCCGGACCTCCCTCTGTCAGCTGCCT
AGATCTG
Found at i:8967576 original size:12 final size:12
Alignment explanation
Indices: 8967559--8967583 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8967549 CTAATCAAAC
8967559 TAAATAAAATAT
1 TAAATAAAATAT
8967571 TAAATAAAATAT
1 TAAATAAAATAT
8967583 T
1 T
8967584 TCATTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:8972792 original size:37 final size:36
Alignment explanation
Indices: 8972742--8972814 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 36
8972732 AATGGCTATC
8972742 GAAAAGTATAGTTCCTTTAGTAAACGACTTGAACAA
1 GAAAAGTATAGTTCCTTTAGTAAACGACTTGAACAA
8972778 NGAAAAGTATAGTTCCTTTAGTAAACGACTTGAACAA
1 -GAAAAGTATAGTTCCTTTAGTAAACGACTTGAACAA
8972815 TAATGAGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.27
Consensus pattern (36 bp):
GAAAAGTATAGTTCCTTTAGTAAACGACTTGAACAA
Found at i:8976433 original size:35 final size:35
Alignment explanation
Indices: 8976394--8976461 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
8976384 GTGTGGATAG
8976394 TGATGTTGATGTGTGCGAGTAGGGAGTGCACACAA
1 TGATGTTGATGTGTGCGAGTAGGGAGTGCACACAA
8976429 TGATGTTGATGTGTGCGAGTAGGGAGTGCACAC
1 TGATGTTGATGTGTGCGAGTAGGGAGTGCACAC
8976462 GANNNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.24, C:0.12, G:0.38, T:0.26
Consensus pattern (35 bp):
TGATGTTGATGTGTGCGAGTAGGGAGTGCACACAA
Found at i:8996750 original size:31 final size:31
Alignment explanation
Indices: 8996712--8997025 Score: 434
Period size: 31 Copynumber: 10.1 Consensus size: 31
8996702 AATAAGGAAT
*
8996712 AAATGTTGTGACACGCCATGCATAACAAGCA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
8996743 AAATGTTGTGACACACCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
8996774 AAATGTTGTGACATGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8996805 AAATGTTGTGACACGTCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8996836 AAACGTTATGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
** *
8996867 AAATACTGTCACACGCCATGCATATA-AAGTA
1 AAATGTTGTGACACGCCATGCATA-ACAAGTA
* * *
8996898 AAATGCTGTCACACGCCATGTATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
8996929 AAATGTTGTTACACGCCATGCATATA-AAGTA
1 AAATGTTGTGACACGCCATGCATA-ACAAGTA
* * *
8996960 AAATGCTGTCACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
8996991 AAATGTTGTGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
8997022 AAAT
1 AAAT
8997026 ANNNNNNNNN
Statistics
Matches: 253, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
30 1 0.00
31 250 0.99
32 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:9001510 original size:35 final size:35
Alignment explanation
Indices: 9001464--9001543 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
9001454 CAGCTTTAGC
9001464 TGCTGATTTTGAAGGCTGGAAA-GTGAACTTTTGGT
1 TGCTGATTTTGAAGGCT-GAAAGGTGAACTTTTGGT
***
9001499 TGCTGATTTTGAAGGCTGAAAGGTGCGGTTTTGGT
1 TGCTGATTTTGAAGGCTGAAAGGTGAACTTTTGGT
*
9001534 TGCTAATTTT
1 TGCTGATTTT
9001544 TGTAGCTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 4 0.10
35 36 0.90
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (35 bp):
TGCTGATTTTGAAGGCTGAAAGGTGAACTTTTGGT
Found at i:9001626 original size:33 final size:31
Alignment explanation
Indices: 9001566--9001632 Score: 89
Period size: 33 Copynumber: 2.1 Consensus size: 31
9001556 TGCTGATTTT
9001566 TTTAAGGAGAATAAAGCAGCTTAGTTGCTGA
1 TTTAAGGAGAATAAAGCAGCTTAGTTGCTGA
* * *
9001597 TTTAGAGGAGAAATAGAGTAGCTTGGTTGCTGA
1 TTTA-AGGAG-AATAAAGCAGCTTAGTTGCTGA
9001630 TTT
1 TTT
9001633 TGATGTGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 4 0.13
32 5 0.16
33 22 0.71
ACGTcount: A:0.31, C:0.07, G:0.28, T:0.33
Consensus pattern (31 bp):
TTTAAGGAGAATAAAGCAGCTTAGTTGCTGA
Found at i:9001825 original size:5 final size:5
Alignment explanation
Indices: 9001805--9001862 Score: 89
Period size: 5 Copynumber: 11.2 Consensus size: 5
9001795 GAAGAGGAAG
*
9001805 AGAAA GAGAGAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAG AGAAA AGAAA
1 AGAAA -AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
9001857 AGAAA A
1 AGAAA A
9001863 ATATATATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
5 41 0.84
6 6 0.12
7 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:9001933 original size:25 final size:25
Alignment explanation
Indices: 9001879--9001934 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
9001869 ATATGCATAT
9001879 AAATGGACATGGCCCAACAAGGAAAG
1 AAATGGACATGGCCCAACAA-GAAAG
* *
9001905 -AATGGACATGGCCTAATTAA-AAAG
1 AAATGGACATGGCCCAA-CAAGAAAG
9001929 AAATGG
1 AAATGG
9001935 GAGAAGTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 20 0.77
26 2 0.08
ACGTcount: A:0.46, C:0.14, G:0.25, T:0.14
Consensus pattern (25 bp):
AAATGGACATGGCCCAACAAGAAAG
Found at i:9003950 original size:11 final size:11
Alignment explanation
Indices: 9003934--9003969 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
9003924 TTTTGGGTTG
9003934 AAAGTTGTTTT
1 AAAGTTGTTTT
9003945 AAAGTTGTTTT
1 AAAGTTGTTTT
9003956 AAAGTTGTTTT
1 AAAGTTGTTTT
9003967 AAA
1 AAA
9003970 ATTTACAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (11 bp):
AAAGTTGTTTT
Found at i:9016562 original size:21 final size:22
Alignment explanation
Indices: 9016509--9016563 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
9016499 AAAATCTTAC
* *
9016509 ATTTTTTCACTTGTTTCCTTGA
1 ATTTTTCCACTTGTTCCCTTGA
9016531 A-TTTTCACACTT-TTCCCTTGA
1 ATTTTTC-CACTTGTTCCCTTGA
9016552 ATTTTTCCACTT
1 ATTTTTCCACTT
9016564 AGGGTTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTTTTCCACTTGTTCCCTTGA
Found at i:9022218 original size:20 final size:21
Alignment explanation
Indices: 9022180--9022229 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
9022170 AATTACTAAT
9022180 TTTAATTTAAAAAAGAAATCA
1 TTTAATTTAAAAAAGAAATCA
9022201 TTTAA-TTAAAAATA-AAAT-A
1 TTTAATTTAAAAA-AGAAATCA
*
9022220 ATTAATTTAA
1 TTTAATTTAA
9022230 TAAATTGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 15 0.58
21 6 0.23
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TTTAATTTAAAAAAGAAATCA
Found at i:9024400 original size:13 final size:13
Alignment explanation
Indices: 9024382--9024406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9024372 AGAGAAATTG
9024382 TGATTTTATAAAA
1 TGATTTTATAAAA
9024395 TGATTTTATAAA
1 TGATTTTATAAA
9024407 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:9025629 original size:15 final size:16
Alignment explanation
Indices: 9025609--9025649 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
9025599 CAGAGATTTT
9025609 GATTTTAAAG-CTTTG
1 GATTTTAAAGTCTTTG
*
9025624 GATTTTAAAGTTTTTG
1 GATTTTAAAGTCTTTG
9025640 G-TTTTAAAGT
1 GATTTTAAAGT
9025650 TATTTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (16 bp):
GATTTTAAAGTCTTTG
Found at i:9025650 original size:15 final size:15
Alignment explanation
Indices: 9025605--9025650 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
9025595 AGATCAGAGA
*
9025605 TTTTGATTTTAAAG-
1 TTTTGGTTTTAAAGT
*
9025619 CTTTGGATTTTAAAGT
1 TTTTGG-TTTTAAAGT
9025635 TTTTGGTTTTAAAGT
1 TTTTGGTTTTAAAGT
9025650 T
1 T
9025651 ATTTTAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.57
Consensus pattern (15 bp):
TTTTGGTTTTAAAGT
Found at i:9025724 original size:19 final size:19
Alignment explanation
Indices: 9025686--9025725 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9025676 GCGTGGCCCA
*
9025686 AGTTAAATTAAGTTAAGTT
1 AGTTAAATTAAGTCAAGTT
* *
9025705 AGTTAAGTTAAGTCAGGTT
1 AGTTAAATTAAGTCAAGTT
9025724 AG
1 AG
9025726 GTAGAATAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.38
Consensus pattern (19 bp):
AGTTAAATTAAGTCAAGTT
Found at i:9025727 original size:5 final size:5
Alignment explanation
Indices: 9025685--9025717 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
9025675 TGCGTGGCCC
*
9025685 AAGTT AAATT AAGTT AAGTT -AGTT AAGTT AAGT
1 AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGT
9025718 CAGGTTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (5 bp):
AAGTT
Found at i:9035713 original size:37 final size:37
Alignment explanation
Indices: 9035661--9035990 Score: 493
Period size: 37 Copynumber: 8.9 Consensus size: 37
9035651 AAAAAGGTTG
*
9035661 CGTTGCCTCAGTTTTGAGGAGTTCATTTTGAAAGTCT
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
* *
9035698 CATTGCCTCAGTTTTGAGGAGTTCATTTTTAAAGTCT
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
*
9035735 CGTTGCCTCAATTTTGAGGAGTTCATTTT-AAAGTCT
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
*
9035771 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGGT-T
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAA-GTCT
*
9035808 ACGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAGTCT
1 -CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
* *
9035846 CGTTGCCTCAATTTTGAGGAGTTCATTTTAAAAGTCC
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
*
9035883 CATTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
* *
9035920 CGTGGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCG
1 CGTTGCCTCAGTTTTGAGGAGTTCA-TTTTAAAAGTCT
* * *
9035958 CATTGCCTCAGTTTTGAGGAATTCATTTAAAAA
1 CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAA
9035991 AAAATTGGTA
Statistics
Matches: 269, Mismatches: 19, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
36 36 0.13
37 166 0.62
38 67 0.25
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (37 bp):
CGTTGCCTCAGTTTTGAGGAGTTCATTTTAAAAGTCT
Found at i:9036141 original size:9 final size:9
Alignment explanation
Indices: 9036122--9036165 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
9036112 ATGAATTAAA
9036122 AAAATATAAT
1 AAAA-ATAAT
9036132 AAAAATAAT
1 AAAAATAAT
9036141 AAAAATAAT
1 AAAAATAAT
*
9036150 AAAAATTA-
1 AAAAATAAT
9036158 AAAAATAA
1 AAAAATAA
9036166 AGAAGAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
8 7 0.22
9 21 0.66
10 4 0.12
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATAAT
Found at i:9037393 original size:17 final size:16
Alignment explanation
Indices: 9037373--9037417 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
9037363 AAACTACTCA
9037373 AAAAATAATAAATAAAT
1 AAAAATAATAAAT-AAT
9037390 AAAAATAAATAAATAAT
1 AAAAAT-AATAAATAAT
*
9037407 AAAAATGATAA
1 AAAAATAATAA
9037418 CAATGATTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 15 0.58
18 7 0.27
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (16 bp):
AAAAATAATAAATAAT
Found at i:9037398 original size:14 final size:14
Alignment explanation
Indices: 9037379--9037405 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9037369 CTCAAAAAAT
9037379 AATAAATAAATAAA
1 AATAAATAAATAAA
9037393 AATAAATAAATAA
1 AATAAATAAATAA
9037406 TAAAAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAAATAAATAAA
Found at i:9040420 original size:23 final size:24
Alignment explanation
Indices: 9040367--9040420 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 24
9040357 TCACAAATAA
* * *
9040367 AAAAATATTTTTTTATTATAACTT
1 AAAAATATTTTTGTATTAGAACAT
* *
9040391 AATAATA-TTTTGTATTAGAAGAT
1 AAAAATATTTTTGTATTAGAACAT
9040414 AAAAATA
1 AAAAATA
9040421 CCTTTCATTG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (24 bp):
AAAAATATTTTTGTATTAGAACAT
Found at i:9042523 original size:2 final size:2
Alignment explanation
Indices: 9042516--9042540 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9042506 GAAATGCAAC
9042516 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9042541 AAATGTAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9048782 original size:14 final size:15
Alignment explanation
Indices: 9048750--9048799 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 15
9048740 CAATAATTAT
*
9048750 AAAAACAATTATAAC
1 AAAAACAAATATAAC
9048765 -AAAACAAAT-TAAC
1 AAAAACAAATATAAC
9048778 AAAAACATCAAATATAAC
1 -AAAA-A-CAAATATAAC
9048796 AAAA
1 AAAA
9048800 TAATATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 4 0.14
14 8 0.28
15 3 0.10
16 1 0.03
17 9 0.31
18 4 0.14
ACGTcount: A:0.70, C:0.14, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAAACAAATATAAC
Found at i:9049235 original size:26 final size:28
Alignment explanation
Indices: 9049197--9049249 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 28
9049187 GGAAAGTGCA
* *
9049197 CAAACAATAAAATTTAAATTTAAATAAT
1 CAAACAATAAAATATAAACTTAAATAAT
*
9049225 CAAA-AAT-AAATATCAACTTAAATAA
1 CAAACAATAAAATATAAACTTAAATAA
9049250 CTAAAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 15 0.68
27 3 0.14
28 4 0.18
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (28 bp):
CAAACAATAAAATATAAACTTAAATAAT
Found at i:9059240 original size:15 final size:15
Alignment explanation
Indices: 9059216--9059248 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
9059206 AAGAATTTAC
9059216 TTTGTGCA-TTATTG
1 TTTGTGCATTTATTG
9059230 TTTGTTGCATTTATTG
1 TTTG-TGCATTTATTG
9059246 TTT
1 TTT
9059249 CATTATTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 4 0.24
16 9 0.53
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (15 bp):
TTTGTGCATTTATTG
Found at i:9061377 original size:110 final size:110
Alignment explanation
Indices: 9061189--9061410 Score: 428
Period size: 110 Copynumber: 2.0 Consensus size: 110
9061179 CATGTAAATA
9061189 CATTTTGTTTGTAAAACACAAAGATTTACCATTTAAACTCCTTTTCATAAAATTTCACCAAAATC
1 CATTTTGTTTGTAAAACACAAAGATTTACCATTTAAACTCCTTTTCATAAAATTTCACCAAAATC
9061254 GATTAAAAACATACTTTAGATAATAAAAATGATGGTAAGGTTACT
66 GATTAAAAACATACTTTAGATAATAAAAATGATGGTAAGGTTACT
9061299 CANTTTTGTTTGTAAAACACAAAGATTTACCATTTAAACTCC-TTTCATAAAATTTCACCAAAAT
1 CA-TTTTGTTTGTAAAACACAAAGATTTACCATTTAAACTCCTTTTCATAAAATTTCACCAAAAT
9061363 CGATTAAAAACATACTTTAGATAATAAAAATGATGGTAAGGTTACT
65 CGATTAAAAACATACTTTAGATAATAAAAATGATGGTAAGGTTACT
9061409 CA
1 CA
9061411 CAGTACTAGG
Statistics
Matches: 111, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
110 72 0.65
111 39 0.35
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (110 bp):
CATTTTGTTTGTAAAACACAAAGATTTACCATTTAAACTCCTTTTCATAAAATTTCACCAAAATC
GATTAAAAACATACTTTAGATAATAAAAATGATGGTAAGGTTACT
Found at i:9079633 original size:20 final size:21
Alignment explanation
Indices: 9079588--9079634 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
9079578 AGATGTCTAA
*
9079588 AATAATTATTTGAAATGAAAT
1 AATAATTATTTGAAATAAAAT
* *
9079609 TATAATTGTTTG-AATAAAAT
1 AATAATTATTTGAAATAAAAT
9079629 AATAAT
1 AATAAT
9079635 ATTNNNNNNN
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATTATTTGAAATAAAAT
Found at i:9081839 original size:20 final size:20
Alignment explanation
Indices: 9081814--9081859 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
9081804 TTTTGGCCCC
*
9081814 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGAAGTATA
*
9081834 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
9081854 ATTTGA
1 ATTTGA
9081860 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:9081935 original size:28 final size:27
Alignment explanation
Indices: 9081904--9081956 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
9081894 TTTAGAGTAT
*
9081904 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
9081932 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
9081957 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:9081962 original size:28 final size:28
Alignment explanation
Indices: 9081904--9081962 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
9081894 TTTAGAGTAT
* *
9081904 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
9081932 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
9081960 AGG
1 AGG
9081963 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:9087199 original size:16 final size:17
Alignment explanation
Indices: 9087171--9087202 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9087161 AGCCCGTAAG
9087171 AGACCCAAATAAAAATT
1 AGACCCAAATAAAAATT
9087188 AGACCC-AATAAAAAT
1 AGACCCAAATAAAAAT
9087203 ATAATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.59, C:0.19, G:0.06, T:0.16
Consensus pattern (17 bp):
AGACCCAAATAAAAATT
Found at i:9094595 original size:15 final size:15
Alignment explanation
Indices: 9094575--9094621 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
9094565 TAAAACAATA
9094575 TTAAAACCAAAAGCT
1 TTAAAACCAAAAGCT
9094590 TTAAAAACC-AAAGCT
1 TT-AAAACCAAAAGCT
* *
9094605 TTAAAATCAAAATCT
1 TTAAAACCAAAAGCT
9094620 TT
1 TT
9094622 TATCTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 5 0.18
15 17 0.61
16 6 0.21
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.28
Consensus pattern (15 bp):
TTAAAACCAAAAGCT
Found at i:9117485 original size:20 final size:20
Alignment explanation
Indices: 9117459--9117504 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
9117449 AATCTTACCT
* *
9117459 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
9117480 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
9117501 TTTT
1 TTTT
9117505 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:9117506 original size:22 final size:22
Alignment explanation
Indices: 9117464--9117504 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9117454 TACCTTTTTT
*
9117464 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
9117486 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
9117505 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:9118279 original size:40 final size:38
Alignment explanation
Indices: 9118219--9118323 Score: 120
Period size: 40 Copynumber: 2.7 Consensus size: 38
9118209 CATCCAGCTT
* *
9118219 ATGTGCATCCCCGCACATCGTGCACATAGCTAGAGTCATC
1 ATGTGCATCCCCCCACATCGTGCACA-A-CTAGAGCCATC
* * *
9118259 ATGTGCATCCCCCCATATCGTGCACAATTAGTGCCATC
1 ATGTGCATCCCCCCACATCGTGCACAACTAGAGCCATC
* *
9118297 TTGTACATCCCCCCCACATCGTGCACA
1 ATGTGCAT-CCCCCCACATCGTGCACA
9118324 CGGGCACTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
38 14 0.25
39 18 0.32
40 24 0.43
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (38 bp):
ATGTGCATCCCCCCACATCGTGCACAACTAGAGCCATC
Found at i:9119716 original size:16 final size:16
Alignment explanation
Indices: 9119691--9119732 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
9119681 AAATTATGAC
9119691 AATTAATT-AAAACTA
1 AATTAATTAAAAACTA
9119706 AATTCAATTAAAAACTA
1 AATT-AATTAAAAACTA
*
9119723 AACTAATTAA
1 AATTAATTAA
9119733 CAAAAACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 10 0.42
17 10 0.42
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (16 bp):
AATTAATTAAAAACTA
Found at i:9119721 original size:17 final size:15
Alignment explanation
Indices: 9119691--9119732 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 15
9119681 AAATTATGAC
9119691 AATTAATTAAAACTA
1 AATTAATTAAAACTA
9119706 AATTCAATTAAAAACTA
1 AATT-AATT-AAAACTA
*
9119723 AACTAATTAA
1 AATTAATTAA
9119733 CAAAAACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 6 0.25
16 8 0.33
17 10 0.42
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (15 bp):
AATTAATTAAAACTA
Found at i:9120523 original size:16 final size:16
Alignment explanation
Indices: 9120498--9120530 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
9120488 TAGAAAAAAT
9120498 AGCATCAGAAGATGAC
1 AGCATCAGAAGATGAC
*
9120514 AGCATTAGAAGATGAC
1 AGCATCAGAAGATGAC
9120530 A
1 A
9120531 AGGTGTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.15, G:0.24, T:0.15
Consensus pattern (16 bp):
AGCATCAGAAGATGAC
Found at i:9134313 original size:16 final size:17
Alignment explanation
Indices: 9134282--9134317 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
9134272 TTTGGTGCCC
*
9134282 AAGAAGTTAGGAAAAGA
1 AAGAAGTTAAGAAAAGA
9134299 AAGAAG-TAAGAAAAGA
1 AAGAAGTTAAGAAAAGA
9134315 AAG
1 AAG
9134318 GAAGGAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (17 bp):
AAGAAGTTAAGAAAAGA
Found at i:9137009 original size:20 final size:20
Alignment explanation
Indices: 9136984--9137029 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
9136974 CTTCTAAACC
9136984 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
9137004 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
9137024 TCAAAT
1 TCAAAT
9137030 GGGGCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:9142459 original size:20 final size:20
Alignment explanation
Indices: 9142422--9142466 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
9142412 AGGAAAGGAA
9142422 GAAAAGAGAAAAACCAAA-G
1 GAAAAGAGAAAAACCAAAGG
**
9142441 GAAAAGTAGAAAATTCAAAGG
1 GAAAAG-AGAAAAACCAAAGG
9142462 GAAAA
1 GAAAA
9142467 TCGCGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.64, C:0.07, G:0.22, T:0.07
Consensus pattern (20 bp):
GAAAAGAGAAAAACCAAAGG
Found at i:9142930 original size:21 final size:20
Alignment explanation
Indices: 9142902--9142942 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
9142892 TGAGCTGATT
9142902 TTGGTGAT-TTTAATGAGTTA
1 TTGGTGATATTTAATG-GTTA
9142922 TTGGCTGATATTTAATGGTTA
1 TTGG-TGATATTTAATGGTTA
9142943 GAAATGTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (20 bp):
TTGGTGATATTTAATGGTTA
Found at i:9145906 original size:72 final size:71
Alignment explanation
Indices: 9145822--9145966 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 71
9145812 ATTTACATTT
9145822 GTATGATCTCAAAATAAGGTTATTCATAGCCATCTCATAATGGAACCATCATTCCAAACTATACA
1 GTATGATCTCAAAATAAGGTTATTCATAGCCATCTCATAATGGAACCATCATTCCAAACTATACA
9145887 TTCATC
66 TTCATC
9145893 NGTATGATCTCAAAATAAGGTTATTCATAGCCATCTCATAATGGAACCATCATTCCAAACTATAC
1 -GTATGATCTCAAAATAAGGTTATTCATAGCCATCTCATAATGGAACCATCATTCCAAACTATAC
9145958 ATTCATC
65 ATTCATC
9145965 GT
1 GT
9145967 TAGCAAAGTG
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 2 0.03
72 71 0.97
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.31
Consensus pattern (71 bp):
GTATGATCTCAAAATAAGGTTATTCATAGCCATCTCATAATGGAACCATCATTCCAAACTATACA
TTCATC
Found at i:9147021 original size:38 final size:38
Alignment explanation
Indices: 9146979--9147065 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
9146969 ACTCATAAGG
*
9146979 CAATATCATCATCATGTGCACTCCTTACTCGCACATTT
1 CAATATCATCATCATGTGCACTCCCTACTCGCACATTT
9147017 CAATATCATCATCATGTGCACTCCCTACTCGCACATTT
1 CAATATCATCATCATGTGCACTCCCTACTCGCACATTT
9147055 CAATATCATCA
1 CAATATCATCA
9147066 CACGCACTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (38 bp):
CAATATCATCATCATGTGCACTCCCTACTCGCACATTT
Found at i:9147073 original size:35 final size:37
Alignment explanation
Indices: 9146979--9147076 Score: 137
Period size: 38 Copynumber: 2.6 Consensus size: 37
9146969 ACTCATAAGG
* *
9146979 CAATATCATCATCATGTGCACTCCTTACTCGCACATTT
1 CAATATCATCATCA-GCGCACTCCCTACTCGCACATTT
*
9147017 CAATATCATCATCATGTGCACTCCCTACTCGCACATTT
1 CAATATCATCATCA-GCGCACTCCCTACTCGCACATTT
9147055 CAATATCATCA-CA-CGCACTCCC
1 CAATATCATCATCAGCGCACTCCC
9147077 ACCCACATCA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
35 8 0.14
37 2 0.03
38 48 0.83
ACGTcount: A:0.28, C:0.36, G:0.07, T:0.30
Consensus pattern (37 bp):
CAATATCATCATCAGCGCACTCCCTACTCGCACATTT
Found at i:9148673 original size:55 final size:54
Alignment explanation
Indices: 9148576--9148839 Score: 305
Period size: 55 Copynumber: 4.8 Consensus size: 54
9148566 AACCACCAGC
* * * **
9148576 TCATCAGTTCATGTGCACTCCCACACTGCACATAGCTGGAATCATCTTCCATCGA
1 TCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGCAATCATCACCCA-CGA
* * * *
9148631 TCATTAGCTCATTTGCACTCCCACACTGCACATAGCTAG-AATCATCACCCACCGG
1 TCATCAGCTCATGTGCACTCCCACACCGCACATAGCT-GCAATCATCACCCA-CGA
* *
9148686 TCATCAGCTCATGTGCACTCCCACACCGCACATAACTGCAATCATCACCCACTA
1 TCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGCAATCATCACCCACGA
* * *
9148740 GTCATCAACTCATGTGCACTCCCACACCGCACAAAGCTGCAATCATCACCCACCA
1 -TCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGCAATCATCACCCACGA
* * * * *
9148795 GCCATCAGCTCATGTGCACTCCTACACCACACATAGTTGGAATCA
1 -TCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGCAATCA
9148840 CCCGTCATCA
Statistics
Matches: 182, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
54 2 0.01
55 179 0.98
56 1 0.01
ACGTcount: A:0.28, C:0.37, G:0.12, T:0.22
Consensus pattern (54 bp):
TCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGCAATCATCACCCACGA
Found at i:9148839 original size:110 final size:110
Alignment explanation
Indices: 9148568--9148839 Score: 350
Period size: 110 Copynumber: 2.5 Consensus size: 110
9148558 ATGTATACAA
* * ** *
9148568 CCACCAGCTCATCAGTTCATGTGCACTCCCACACTGCACATAGCTGGAATCATCTTCCATCGATC
1 CCACCAGC-CATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCACCCATAGATC
* * * * *
9148633 ATTAGCTCATTTGCACTCCCACACTGCACATAGCTAGAATCATCAC
65 ATCAACTCATGTGCACTCCCACACCGCACAAAGCTAGAATCATCAC
* * * *
9148679 CCACCGGTCATCAGCTCATGTGCACTCCCACACCGCACATAACTGCAATCATCACCCACTAG-TC
1 CCACCAGCCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCACCCA-TAGATC
9148743 ATCAACTCATGTGCACTCCCACACCGCACAAAGCT-GCAATCATCAC
65 ATCAACTCATGTGCACTCCCACACCGCACAAAGCTAG-AATCATCAC
* * *
9148789 CCACCAGCCATCAGCTCATGTGCACTCCTACACCACACATAGTTGGAATCA
1 CCACCAGCCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCA
9148840 CCCGTCATCA
Statistics
Matches: 138, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
109 1 0.01
110 129 0.93
111 8 0.06
ACGTcount: A:0.28, C:0.38, G:0.12, T:0.21
Consensus pattern (110 bp):
CCACCAGCCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCACCCATAGATCA
TCAACTCATGTGCACTCCCACACCGCACAAAGCTAGAATCATCAC
Found at i:9149667 original size:17 final size:16
Alignment explanation
Indices: 9149645--9149680 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
9149635 TTTGGTGCCT
*
9149645 AAGAAGTTAGAAGAAGA
1 AAGAAGTAAGAA-AAGA
9149662 AAGAAGTAAGAAAAGA
1 AAGAAGTAAGAAAAGA
9149678 AAG
1 AAG
9149681 GAAAGGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (16 bp):
AAGAAGTAAGAAAAGA
Found at i:9149691 original size:15 final size:14
Alignment explanation
Indices: 9149671--9149704 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
9149661 AAAGAAGTAA
9149671 GAAAAGAAAGGAAAG
1 GAAAAGAAAGG-AAG
9149686 GAAAAGAAAGGAAG
1 GAAAAGAAAGGAAG
9149700 GAAAA
1 GAAAA
9149705 CAAATGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
GAAAAGAAAGGAAG
Found at i:9151164 original size:19 final size:19
Alignment explanation
Indices: 9151140--9151180 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
9151130 TTCTTCTTCT
*
9151140 TTTTCATGCTCCCACGCCA
1 TTTTCATGCTCCCACACCA
9151159 TTTTCATGCTCCCACACCA
1 TTTTCATGCTCCCACACCA
9151178 TTT
1 TTT
9151181 CACCTTACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.39, G:0.07, T:0.37
Consensus pattern (19 bp):
TTTTCATGCTCCCACACCA
Found at i:9151290 original size:19 final size:18
Alignment explanation
Indices: 9151268--9151325 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
9151258 GAGATCAGTT
9151268 GAAAGAAAGGAGAAAGGAA
1 GAAA-AAAGGAGAAAGGAA
9151287 GAAATAAAGGAG-AAGG--
1 GAAA-AAAGGAGAAAGGAA
*
9151303 GAAAAGA-GAGAAAGGAA
1 GAAAAAAGGAGAAAGGAA
9151320 GAAAAA
1 GAAAAA
9151326 GCTTGGTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 3 0.09
15 6 0.18
16 4 0.12
17 5 0.15
18 4 0.12
19 11 0.33
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (18 bp):
GAAAAAAGGAGAAAGGAA
Found at i:9163874 original size:38 final size:38
Alignment explanation
Indices: 9163746--9164076 Score: 425
Period size: 38 Copynumber: 8.7 Consensus size: 38
9163736 GAAAGTCTTA
* *
9163746 TTGCCTTAGTTTTGAGGAGTTTA-TTTTAGAAGTTTCG
1 TTGCCTCAGTTTTGAGGAGTTCATTTTTAGAAGTTTCG
* *
9163783 TTGCCTCAGTTTTAAGGAGTTCATTTTTTAGAAGTTTCA
1 TTGCCTCAGTTTTGAGGAGTTCA-TTTTTAGAAGTTTCG
* *
9163822 TTGCCTTAGTTTTGAGGAGTTCATCTTTTAG-AGTTTCA
1 TTGCCTCAGTTTTGAGGAGTTCAT-TTTTAGAAGTTTCG
* * * *
9163860 TTGCCTCAGCTTTGAGGACTTCATTTTTAAAAGTCTCG
1 TTGCCTCAGTTTTGAGGAGTTCATTTTTAGAAGTTTCG
*
9163898 TTGCCTCAGTTTTGAGGAGTTTA-TTTTAGAAGTTTCG
1 TTGCCTCAGTTTTGAGGAGTTCATTTTTAGAAGTTTCG
9163935 TTGCCTCAGTTTTGAGGAGTTCATTTTTTAGAAGTTTCG
1 TTGCCTCAGTTTTGAGGAGTTCA-TTTTTAGAAGTTTCG
* *
9163974 TTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCTCG
1 TTGCCTCAGTTTTGAGGAGTTCATTTTTAGAAGTTTCG
* * * * *
9164012 TTACTTCAGTTTTGAAGAGTTCATTTTTAAAAGTCTCG
1 TTGCCTCAGTTTTGAGGAGTTCATTTTTAGAAGTTTCG
* *
9164050 TTGCCTCAGCTTAGAGGAGTCTCATTT
1 TTGCCTCAGTTTTGAGGAGT-TCATTT
9164077 AAAAAAAACA
Statistics
Matches: 259, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
37 59 0.23
38 117 0.45
39 83 0.32
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (38 bp):
TTGCCTCAGTTTTGAGGAGTTCATTTTTAGAAGTTTCG
Found at i:9164026 original size:152 final size:152
Alignment explanation
Indices: 9163732--9164069 Score: 507
Period size: 152 Copynumber: 2.2 Consensus size: 152
9163722 GTTTCAAGAC
* ** *
9163732 TTTTGAAAGTCTTATTGCCTTAGTTTTGAGGAGTTTATTTTAGAAGTTTCGTTGCCTCAGTTTTA
1 TTTTAAAAGTCTCGTTGCCTCAGTTTTGAGGAGTTTATTTTAGAAGTTTCGTTGCCTCAGTTTTA
* * *
9163797 AGGAGTTCATTTTTTAGAAGTTTCATTGCCTTAGTTTTGAGGAGTTCATCTTTTAGAGTTTCATT
66 AGGAGTTCATTTTTTAGAAGTTTCATTGCCTCAGTTTTGAGGAGTTCATCTTTTAAAGTCTCATT
* *
9163862 GCCTCAGCTTTGAGGACTTCAT
131 ACCTCAGCTTTGAAGACTTCAT
*
9163884 TTTTAAAAGTCTCGTTGCCTCAGTTTTGAGGAGTTTATTTTAGAAGTTTCGTTGCCTCAGTTTTG
1 TTTTAAAAGTCTCGTTGCCTCAGTTTTGAGGAGTTTATTTTAGAAGTTTCGTTGCCTCAGTTTTA
* *
9163949 AGGAGTTCATTTTTTAGAAGTTTCGTTGCCTCAGTTTTGAGGAGTTCAT-TTTTAAAAGTCTCGT
66 AGGAGTTCATTTTTTAGAAGTTTCATTGCCTCAGTTTTGAGGAGTTCATCTTTT-AAAGTCTCAT
* * *
9164013 TACTTCAGTTTTGAAGAGTTCAT
130 TACCTCAGCTTTGAAGACTTCAT
* *
9164036 TTTTAAAAGTCTCGTTGCCTCAGCTTAGAGGAGT
1 TTTTAAAAGTCTCGTTGCCTCAGTTTTGAGGAGT
9164070 CTCATTTAAA
Statistics
Matches: 168, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
151 4 0.02
152 164 0.98
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (152 bp):
TTTTAAAAGTCTCGTTGCCTCAGTTTTGAGGAGTTTATTTTAGAAGTTTCGTTGCCTCAGTTTTA
AGGAGTTCATTTTTTAGAAGTTTCATTGCCTCAGTTTTGAGGAGTTCATCTTTTAAAGTCTCATT
ACCTCAGCTTTGAAGACTTCAT
Found at i:9164092 original size:11 final size:11
Alignment explanation
Indices: 9164076--9164105 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
9164066 GAGTCTCATT
9164076 TAAAAAAAACA
1 TAAAAAAAACA
9164087 TAAAAAAAACA
1 TAAAAAAAACA
9164098 -AAAAAAAA
1 TAAAAAAAA
9164106 GCTTTGGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.07
Consensus pattern (11 bp):
TAAAAAAAACA
Found at i:9165012 original size:2 final size:2
Alignment explanation
Indices: 9165005--9165031 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9164995 GGGCATAGAT
9165005 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
9165032 AGCTCGGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9167881 original size:21 final size:21
Alignment explanation
Indices: 9167841--9167881 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9167831 GACAAAAACT
*
9167841 TTCTCGCTGCAGCGAGATTCA
1 TTCTCGCTGCAGCAAGATTCA
*
9167862 TTCTCGCTGCAGCAATATTC
1 TTCTCGCTGCAGCAAGATTC
9167882 CAGCCAGCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.32
Consensus pattern (21 bp):
TTCTCGCTGCAGCAAGATTCA
Found at i:9168120 original size:4 final size:4
Alignment explanation
Indices: 9168105--9168258 Score: 128
Period size: 4 Copynumber: 38.5 Consensus size: 4
9168095 TTTACGTATG
* * * * * *
9168105 TATA TATT TATA TATA TATG TATA CATA CATA TATA TATA TACA TATG
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * *
9168153 TATA TACA TATA TATA TATA CATA TGTA TATA CATA TATG TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * * * *
9168201 CATA CAAA TATA TATA CATA TATA TACA TGTA TGTA TATG TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
*
9168249 TATA CATA TA
1 TATA TATA TA
9168259 CCCATAATCA
Statistics
Matches: 116, Mismatches: 34, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
4 116 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (4 bp):
TATA
Found at i:9168137 original size:14 final size:14
Alignment explanation
Indices: 9168113--9168204 Score: 116
Period size: 14 Copynumber: 6.7 Consensus size: 14
9168103 TGTATATATT
*
9168113 TATATATATATGTA
1 TATATACATATGTA
* *
9168127 TACATACATATATA
1 TATATACATATGTA
9168141 TATATACATATG--
1 TATATACATATGTA
*
9168153 TATATACATATATA
1 TATATACATATGTA
9168167 TATATACATATGTA
1 TATATACATATGTA
* *
9168181 TATACATATATGTA
1 TATATACATATGTA
9168195 TATATACATA
1 TATATACATA
9168205 CAAATATATA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
12 11 0.17
14 54 0.83
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (14 bp):
TATATACATATGTA
Found at i:9168137 original size:26 final size:26
Alignment explanation
Indices: 9168106--9168257 Score: 164
Period size: 26 Copynumber: 5.7 Consensus size: 26
9168096 TTACGTATGT
* *
9168106 ATATATTTATATATATATGTATACATAC
1 ATATATATATATACATATGTAT--ATAC
9168134 ATATATATATATACATATGTATATAC
1 ATATATATATATACATATGTATATAC
9168160 ATATATATATATACATATGTATATAC
1 ATATATATATATACATATGTATATAC
*** *
9168186 ATATATGTATATATACATACAAATATAT
1 ATATA--TATATATACATATGTATATAC
*
9168214 ATACATATATATACATGTATGTATAT--
1 ATATATATATATACA--TATGTATATAC
*
9168240 GTATATATATATACATAT
1 ATATATATATATACATAT
9168258 ACCCATAATC
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
24 3 0.03
26 58 0.54
28 47 0.44
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (26 bp):
ATATATATATATACATATGTATATAC
Found at i:9168211 original size:14 final size:14
Alignment explanation
Indices: 9168106--9168229 Score: 103
Period size: 14 Copynumber: 8.9 Consensus size: 14
9168096 TTACGTATGT
* * *
9168106 ATATATTTATATAT
1 ATATATATACATAC
*
9168120 ATATGTATACATAC
1 ATATATATACATAC
*
9168134 ATATATATATATAC
1 ATATATATACATAC
*
9168148 ATATGTATATACATAT
1 ATA--TATATACATAC
9168164 ATATATATACAT--
1 ATATATATACATAC
* *
9168176 ATGTATATACATAT
1 ATATATATACATAC
9168190 ATGTATATATACATAC
1 A--TATATATACATAC
*
9168206 A-A-ATATATATAC
1 ATATATATACATAC
9168218 ATATATATACAT
1 ATATATATACAT
9168230 GTATGTATAT
Statistics
Matches: 89, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
12 21 0.24
13 2 0.02
14 42 0.47
16 24 0.27
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (14 bp):
ATATATATACATAC
Done.