Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 29 of 30
Found at i:10134987 original size:14 final size:14
Alignment explanation
Indices: 10134947--10134990 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
10134937 TATTTTTTAA
*
10134947 TCTTTCTTTTTAATT
1 TCTTT-TTTTTATTT
*
10134962 TCTTTTTATTATTT
1 TCTTTTTTTTATTT
*
10134976 TGTTTTTTTTATTT
1 TCTTTTTTTTATTT
10134990 T
1 T
10134991 TTAAACCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (14 bp):
TCTTTTTTTTATTT
Found at i:10135970 original size:10 final size:11
Alignment explanation
Indices: 10135949--10135973 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10135939 GCTTTAGGTA
10135949 TTAAATTTTTT
1 TTAAATTTTTT
10135960 TTAAATTTTTT
1 TTAAATTTTTT
10135971 TTA
1 TTA
10135974 TAGAAGGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTAAATTTTTT
Found at i:10137356 original size:28 final size:29
Alignment explanation
Indices: 10137298--10137357 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 29
10137288 CTCAATTTGA
10137298 TGATATGGATTGAATATTTTTGTACTCAGTT
1 TGATATGGATTG-A-ATTTTTGTACTCAGTT
* *
10137329 TGATATGGATTG-ATTTTTGTTCTTAGTT
1 TGATATGGATTGAATTTTTGTACTCAGTT
10137357 T
1 T
10137358 CATCAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 15 0.56
31 12 0.44
ACGTcount: A:0.22, C:0.05, G:0.20, T:0.53
Consensus pattern (29 bp):
TGATATGGATTGAATTTTTGTACTCAGTT
Found at i:10141267 original size:21 final size:21
Alignment explanation
Indices: 10141225--10141267 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10141215 CCTGTACCGG
*
10141225 TGGTGGAACTAAAGGAGTAAC
1 TGGTGGAACTAAAGGAGAAAC
* * *
10141246 TGGTGGTACTATAGGTGAAAC
1 TGGTGGAACTAAAGGAGAAAC
10141267 T
1 T
10141268 TGACCAGTCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.26
Consensus pattern (21 bp):
TGGTGGAACTAAAGGAGAAAC
Found at i:10148782 original size:20 final size:21
Alignment explanation
Indices: 10148747--10148785 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
10148737 AAAACTAATA
*
10148747 AATAACAATCAAATTAAAAAG
1 AATAACAATAAAATTAAAAAG
10148768 AATAAC-ATAAAATTAAAA
1 AATAACAATAAAATTAAAA
10148786 TAACTCACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.21
Consensus pattern (21 bp):
AATAACAATAAAATTAAAAAG
Found at i:10149346 original size:19 final size:19
Alignment explanation
Indices: 10149319--10149356 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10149309 CCATTTGACT
10149319 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
*
10149338 TATTTGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
10149357 GTTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:10151348 original size:44 final size:45
Alignment explanation
Indices: 10151277--10151403 Score: 157
Period size: 44 Copynumber: 2.8 Consensus size: 45
10151267 CACGCTATGA
** * *
10151277 TGTTACACGCCATGTACAAAACCATGTGACAGGCCATGGTTAACG
1 TGTTACACGCCATGTACAAAAATATGTGACAAGCCATGATTAACG
* * * * *
10151322 TGTTACATGCTATGT-CAAAAATATGTGACAATCCATGATTAGCT
1 TGTTACACGCCATGTACAAAAATATGTGACAAGCCATGATTAACG
*
10151366 TGTTACACGCCATTTACAAAAATATGTGACAAGCCATG
1 TGTTACACGCCATGTACAAAAATATGTGACAAGCCATG
10151404 TACAAAAACC
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 34 0.50
45 34 0.50
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (45 bp):
TGTTACACGCCATGTACAAAAATATGTGACAAGCCATGATTAACG
Found at i:10151407 original size:24 final size:24
Alignment explanation
Indices: 10151374--10151423 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
10151364 CTTGTTACAC
* *
10151374 GCCATTTACAAAAATATGTGACAA
1 GCCATGTACAAAAACATGTGACAA
*
10151398 GCCATGTACAAAAACCTGTGACAA
1 GCCATGTACAAAAACATGTGACAA
10151422 GC
1 GC
10151424 TATGGTTAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (24 bp):
GCCATGTACAAAAACATGTGACAA
Found at i:10151465 original size:45 final size:45
Alignment explanation
Indices: 10151398--10151546 Score: 217
Period size: 45 Copynumber: 3.3 Consensus size: 45
10151388 TATGTGACAA
*
10151398 GCCATGTACAAAAACCTGTGACAAGCTATGGTTAGCTTGTTACAC
1 GCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACAC
* *
10151443 GCCATGTACAAAAACCTATGACAAGCCATGGTTAGCGTGTTACAC
1 GCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACAC
* * ** * *
10151488 TCTATGTACAAAAATATGTGACAAGCCACGGTTAGCTTGTTACAT
1 GCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACAC
10151533 GCCATGTACAAAAA
1 GCCATGTACAAAAA
10151547 TACGTGATAA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCTTGTTACAC
Found at i:10151485 original size:114 final size:113
Alignment explanation
Indices: 10151461--10151676 Score: 162
Period size: 114 Copynumber: 1.9 Consensus size: 113
10151451 CAAAAACCTA
* * * * * * * *
10151461 TGACAAGCCATGGTTAGCGTGTTACACTCTATGTACAAAAATATGTGACAAGCCACGGTTAGCTT
1 TGACAAGCCATGGTTAACGTGTTACACGCCATGT-CAAAAACATATGACAAGCCATGATTAGCGT
* * * * * *
10151526 GTTACATGCCATGTACAAAAATACGTGATAAGCCATATACAAAAACTTG
65 GTTACACGCCATGTACAAAAATATGTGACAAGCCATGTACAAAACCATG
* * * * * * * * * * *
10151575 TGACAATCTATGGTTAGCTTTTTACATGCTATGTACAAAAACCTGTGATAAGCCATGGTTAGCGT
1 TGACAAGCCATGGTTAACGTGTTACACGCCATGT-CAAAAACATATGACAAGCCATGATTAGCGT
* * *
10151640 GTTACACGCTATGTATAAAAATATGTGACAAACCATG
65 GTTACACGCCATGTACAAAAATATGTGACAAGCCATG
10151677 GTTAGCTTGT
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
114 84 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (113 bp):
TGACAAGCCATGGTTAACGTGTTACACGCCATGTCAAAAACATATGACAAGCCATGATTAGCGTG
TTACACGCCATGTACAAAAATATGTGACAAGCCATGTACAAAACCATG
Found at i:10151567 original size:159 final size:159
Alignment explanation
Indices: 10151277--10151688 Score: 605
Period size: 159 Copynumber: 2.6 Consensus size: 159
10151267 CACGCTATGA
* *
10151277 TGTTACACGCCATGTAC-AAAACCATGTGACAGGCCATGGTTAACGTGTTACA-TGCTATGT-CA
1 TGTTACACGCCATGTACAAAAACC-TGTGACAAGCCATGGTTAGCGTGTTACACT-CTATGTACA
* * * * *
10151339 AAAATATGTGACAATCCATGATTAGCTTGTTACACGCCATTTACAAAAATATGTGACAAGCCATG
64 AAAATATGTGACAAACCATGGTTAGCTTGTTACACGCCATGTACAAAAATACGTGACAAGCCATA
10151404 TACAAAAACCTGTGACAAGCTATGGTTAGCT
129 TACAAAAACCTGTGACAAGCTATGGTTAGCT
*
10151435 TGTTACACGCCATGTACAAAAACCTATGACAAGCCATGGTTAGCGTGTTACACTCTATGTACAAA
1 TGTTACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTTACACTCTATGTACAAA
* * * *
10151500 AATATGTGACAAGCCACGGTTAGCTTGTTACATGCCATGTACAAAAATACGTGATAAGCCATATA
66 AATATGTGACAAACCATGGTTAGCTTGTTACACGCCATGTACAAAAATACGTGACAAGCCATATA
* *
10151565 CAAAAACTTGTGACAATCTATGGTTAGCT
131 CAAAAACCTGTGACAAGCTATGGTTAGCT
* * * * * *
10151594 TTTTACATGCTATGTACAAAAACCTGTGATAAGCCATGGTTAGCGTGTTACACGCTATGTATAAA
1 TGTTACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTTACACTCTATGTACAAA
10151659 AATATGTGACAAACCATGGTTAGCTTGTTA
66 AATATGTGACAAACCATGGTTAGCTTGTTA
10151689 TGAAATACCC
Statistics
Matches: 229, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
158 48 0.21
159 181 0.79
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (159 bp):
TGTTACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGCGTGTTACACTCTATGTACAAA
AATATGTGACAAACCATGGTTAGCTTGTTACACGCCATGTACAAAAATACGTGACAAGCCATATA
CAAAAACCTGTGACAAGCTATGGTTAGCT
Found at i:10151609 original size:69 final size:69
Alignment explanation
Indices: 10151494--10151630 Score: 188
Period size: 69 Copynumber: 2.0 Consensus size: 69
10151484 ACACTCTATG
10151494 TACAAAAATATGTGACAAGCCACGGTTAGCTTGTTACATGCCATGTACAAAAATAC-GTGATAAG
1 TACAAAAATATGTGACAAGCCACGGTTAGCTTGTTACATGCCATGTACAAAAA-ACTGTGATAAG
10151558 CCATA
65 CCATA
* * * * * *
10151563 TACAAAAACT-TGTGACAATCTATGGTTAGCTTTTTACATGCTATGTACAAAAACCTGTGATAAG
1 TACAAAAA-TATGTGACAAGCCACGGTTAGCTTGTTACATGCCATGTACAAAAAACTGTGATAAG
10151627 CCAT
65 CCAT
10151631 GGTTAGCGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
68 1 0.02
69 58 0.97
70 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (69 bp):
TACAAAAATATGTGACAAGCCACGGTTAGCTTGTTACATGCCATGTACAAAAAACTGTGATAAGC
CATA
Found at i:10151614 original size:45 final size:45
Alignment explanation
Indices: 10151563--10151688 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
10151553 ATAAGCCATA
* * * *
10151563 TACAAAAACTTGTGACAATCTATGGTTAGCTTTTTACATGCTATG
1 TACAAAAACTTGTGACAAACCATGGTTAGCTTGTTACACGCTATG
* * * *
10151608 TACAAAAACCTGTGATAAGCCATGGTTAGCGTGTTACACGCTATG
1 TACAAAAACTTGTGACAAACCATGGTTAGCTTGTTACACGCTATG
*
10151653 TATAAAAA-TATGTGACAAACCATGGTTAGCTTGTTA
1 TACAAAAACT-TGTGACAAACCATGGTTAGCTTGTTA
10151689 TGAAATACCC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (45 bp):
TACAAAAACTTGTGACAAACCATGGTTAGCTTGTTACACGCTATG
Found at i:10155268 original size:5 final size:5
Alignment explanation
Indices: 10155258--10155288 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
10155248 CCCCAAGTCC
*
10155258 AGTTA AGTTA AGTTA AGTTA AGTTA GGTTA A
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA A
10155289 ATTGAATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (5 bp):
AGTTA
Found at i:10172050 original size:28 final size:27
Alignment explanation
Indices: 10172015--10172067 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
10172005 TATCCTAGTG
*
10172015 GTGGAAAATTACAATTTTGCCCCTAGA
1 GTGGAAAATTACAATTTTACCCCTAGA
*
10172042 GTGGCAAAATTACCATTTTACCCCTA
1 GTGG-AAAATTACAATTTTACCCCTA
10172068 TACTCCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (27 bp):
GTGGAAAATTACAATTTTACCCCTAGA
Found at i:10172136 original size:20 final size:20
Alignment explanation
Indices: 10172111--10172156 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
10172101 CTTCTAAACC
10172111 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
10172131 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
10172151 TCAAAT
1 TCAAAT
10172157 GAGGACAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:10173784 original size:18 final size:16
Alignment explanation
Indices: 10173745--10173787 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
10173735 TCATCCATCA
*
10173745 TTTTTTTATTTTTATT
1 TTTTTTTATTTTTACT
10173761 TATTTTTTATTTTTAAGCT
1 T-TTTTTTATTTTT-A-CT
10173780 TTTTTTTA
1 TTTTTTTA
10173788 AATAGGTGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 12 0.52
18 8 0.35
19 2 0.09
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTTTTATTTTTACT
Found at i:10174996 original size:171 final size:168
Alignment explanation
Indices: 10174697--10175305 Score: 643
Period size: 171 Copynumber: 3.6 Consensus size: 168
10174687 NNNNNNNNNN
* * * * * *
10174697 ATTTAAAGTGAGTAATAAGCCTTTTGAAGGAATGACTAACTATAAATGGACTTTTCTTCTTAGAG
1 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTCTTCTCAGAG
* * * * *
10174762 GATGGCTTTTGCTTCATGTTTCTCGAGG-AAAAAATCTAACTATCATCTGTTTTAACCAAAAATG
66 GAGGGCTTTTGCTTCATGTTTCCCGAGGTAAAAATTC-AATTATAATCTGTTTTAA-CAAAAATG
* *
10174826 TAAAAAAGTTAAACTTAAAATAAATTATGAGATTATACAACC
129 TAAAAAA-TTCAACTTAAAATCAATTATGAGATTATA-AACC
* * *
10174868 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAGCG
1 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTCTTCTCAGAG
* * * * * * *
10174933 GAGGGCTTTAGCATCATGATTCCCGTGGTCAACATTCAATTATAATCTATTTTAACAAAAAATGT
66 GAGGGCTTTTGCTTCATGTTTCCCGAGGTAAAAATTCAATTATAATCTGTTTTAAC-AAAAATGT
**
10174998 AAAAAAATTCAACTTAAAATCAACAATGAGATTATAAAGCC
130 -AAAAAATTCAACTTAAAATCAATTATGAGATTATAAA-CC
* * *
10175039 ATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGT-GCTTATAAATGAACTTTTCTTCTCA-A
1 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTAAC-TATAAATGGACTTTTCTTCTCAGA
** * * *
10175102 TGGATGGTATTTTGCTTCACGTTTCCCGAGGTAAATATTCAATTATAATCTGTTTTAACAAAAAG
65 -GGA-GGGCTTTTGCTTCATGTTTCCCGAGGTAAAAATTCAATTATAATCTGTTTTAACAAAAAT
* *
10175167 GTAAAAACATTCAACTTAAAATCAATTATGAGATTTTAAAATC
128 GTAAAAA-ATTCAACTTAAAATCAATTATGAGATTAT-AAACC
* * * * * * *
10175210 ATTTAAAGTGAGTAACAAGACTTTTGACGGCATGAGTAACTAT-AATGGGCTTTTCTTGTCA-AT
1 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTCTTCTCAGA-
** * **
10175273 GGATAGCTTTTGCTTCACGTTTCTTGAGGTAAA
65 GGAGGGCTTTTGCTTCATGTTTCCCGAGGTAAA
10175306 CTGTAACACC
Statistics
Matches: 367, Mismatches: 61, Indels: 22
0.82 0.14 0.05
Matches are distributed among these distances:
169 24 0.07
170 29 0.08
171 255 0.69
172 59 0.16
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (168 bp):
ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTCTTCTCAGAG
GAGGGCTTTTGCTTCATGTTTCCCGAGGTAAAAATTCAATTATAATCTGTTTTAACAAAAATGTA
AAAAATTCAACTTAAAATCAATTATGAGATTATAAACC
Found at i:10179676 original size:171 final size:170
Alignment explanation
Indices: 10179382--10180399 Score: 1077
Period size: 171 Copynumber: 6.0 Consensus size: 170
10179372 GTCGTTAAAT
* * * * **
10179382 AAACATTCAATTATAATCTATTTTAACAAAAAAAGTAAAAAAATTCAACTTAAAATAAATTACCA
1 AAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
* * * * * *
10179447 AATTATAAAACTATTTAAAGTGAGTAATAAGGATTTCAAAGGCATGAGTGACTATAAATGGACTT
66 GATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
10179512 TTCTTTCCAATGGTTGGCTTTTGCTTCACGTTTCCCGAGGT
131 TTCTTT-CAATGGATGGCTTTCGCTTCACGTTTCCCGAGGC
* * * *
10179553 AAACAGTCAATTATAATTTGTTTTAACAAAAAATGTAATAAAATTAAACTTAAAATAAATTATGA
1 AAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
* * *
10179618 GATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATAAGTAATTATAAATGGACTT
66 GATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
10179683 TTTTTATCAATCGATGGCTTTCGCTTCATGTTTCCCGAGGC
131 TTCTT-TCAATGGATGGCTTTCGCTTCACGTTTCCCGAGGC
** * * *
10179724 AAACATTCAATTATAATTTGTTTTAACCTAATATGTAAAAAAATTCAACTTAGAATCAATAATGA
1 AAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
* * * * * *
10179789 GATTATATAACCATTTAAATCA-AGTAATAAGGCTTTCAAAGGCATGAGTCACTATATATGGACT
66 GATTATAAAACCATTTAAA-GAGAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ***
10179853 TTTCTTGTCAATGGATAGCTTTCGCTTAACGTTTCCTTTGGC
130 TTTCTT-TCAATGGATGGCTTTCGCTTCACGTTTCCCGAGGC
* * ** * * * *
10179895 AAACATT-TATTATAATCTT-TCTTAAC-TGAAATGTAAAAATATACAGCTTAAAATCAATTATA
1 AAACATTCAATTATAAT-TTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATG
* * * *
10179957 AGATTATAAAACCATGTAAAGTGAGTAAT-AAGACTTTTGAAGGCATGAGTGACTATAAATGAAC
65 AGATTATAAAACCATTTAAAGAGAGTAATAAAG-CTTTCGAAGGCATGAGTGACTATAAATGGAC
* *** *
10180021 TTTTCTTTTCAGTGGATAATATTTCGCTTCGA-GTTTCCCAAGGGC
129 TTTTC-TTTCAATGGAT-GGCTTTCGCTTC-ACGTTTCCCGA-GGC
* * * *
10180066 AAA-ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTCAAAATCAATTATGA
1 AAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
* * * * *
10180130 GATTATAAAACTATTTAAAGCGAGTAAT-AAGCCTTTCGAAGGCATGAGTGATTCTAAAGGGACT
66 GATTATAAAACCATTTAAAGAGAGTAATAAAG-CTTTCGAAGGCATGAGTGACTATAAATGGACT
* ** * *
10180194 TTTCTTACCAAT-GATTGGCTTTCATTTCATGTTTCCC-ATGGT
130 TTTCTT-TCAATGGA-TGGCTTTCGCTTCACGTTTCCCGA-GGC
* * ** *
10180236 AAACATTTAATTATAATCTT-TCTTAACGTAAAATTTAAAAAAATTCAACTTAAAATCAATTATG
1 AAACATTCAATTATAAT-TTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATG
* * * *
10180300 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGGATGAGTGAATATAAATGGACT
65 AGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
*
10180365 TTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTC
130 TTTCTT-TCAATGGATGGCTTTCGCTTCACGTTTC
10180400 TTANNNNNNN
Statistics
Matches: 704, Mismatches: 124, Indels: 38
0.81 0.14 0.04
Matches are distributed among these distances:
168 2 0.00
169 91 0.13
170 42 0.06
171 470 0.67
172 99 0.14
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (170 bp):
AAACATTCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
GATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
TTCTTTCAATGGATGGCTTTCGCTTCACGTTTCCCGAGGC
Found at i:10180364 original size:512 final size:511
Alignment explanation
Indices: 10179416--10180399 Score: 1329
Period size: 512 Copynumber: 1.9 Consensus size: 511
10179406 AACAAAAAAA
* * *
10179416 GTAAAAAAATTCAACTTAAAATAAATTACCAAATTATAAAACTATTTAAAGTGAGTAATAAGGAT
1 GTAAAAAAATACAACTTAAAATAAATTACCAAATTATAAAACCATGTAAAGTGAGTAATAAGGAT
* * **
10179481 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTTCCAATGGTTGGCTTTTGCTTCACGTTTC
66 TTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGAATTTTGCTTCACGTTTC
* * * * * *
10179546 CCGAGGTAAACAGTCAATTATAATTTGTTTTAACAAAAAATGTAATAAAATTAAACTTAAAATAA
131 CCAAGGCAAACAGTCAATTATAATCTGTTTTAACAAAAAAGGTAAAAAAATTAAACTCAAAATAA
10179611 ATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATAAGTAATTATAAA
196 ATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATAAGTAATTATAAA
* * * *
10179676 TGGACTTTTTTTATCAATCGATGGCTTTCGCTTCATGTTTCCCGAGGCAAACATTCAATTATAAT
261 GGGACTTTTCTTACCAATCGATGGCTTTCACTTCATGTTTCCCGAGGCAAACATTCAATTATAAT
* * * *
10179741 TTGTTTTAACCTAATATGTAAAAAAATTCAACTTAGAATCAATAATGAGATTATATAACCATTTA
326 TTGTCTTAACCTAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTA
* * * *
10179806 AATCAAGTAATAAGGCTTTCAAAGGCATGAGTCACTATATATGGACTTTTCTTGTCAATGGATAG
391 AAGCAAGTAATAAGGCTTTCAAAGGCATGAGTCAATATAAATGGACTTTTCTTGTCAATCGATAG
10179871 CTTTCGCTTAACGTTTCCTTTGGCAAACATTTATTATAATCTTTCTTAACTGAAAT
456 CTTTCGCTTAACGTTTCCTTTGGCAAACATTTATTATAATCTTTCTTAACTGAAAT
* * * *
10179927 GTAAAAATATACAGCTTAAAATCAATTA-TAAGATTATAAAACCATGTAAAGTGAGTAATAA-GA
1 GTAAAAAAATACAACTTAAAATAAATTACCAA-ATTATAAAACCATGTAAAGTGAGTAATAAGGA
** * *
10179990 CTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTTTTCAGTGGAT-AATATTTCGCTTCGA-
65 -TTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGAAT-TTT-GCTTC-AC
* * *
10180053 GTTTCCCAAGGGCAAA-ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTCA
126 GTTTCCCAA-GGCAAACAGTCAATTATAATCTGTTTTAACAAAAAAGGTAAAAAAATTAAACTCA
* * * * *
10180117 AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAAT-AAGCCTTTCGAAGGCATGAGTGA
190 AAATAAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAG-CTTTCGAAGGCATAAGTAA
* * * *
10180181 TTCTAAAGGGACTTTTCTTACCAAT-GATTGGCTTTCATTTCATGTTTCCC-ATGGTAAACATTT
254 TTATAAAGGGACTTTTCTTACCAATCGA-TGGCTTTCACTTCATGTTTCCCGA-GGCAAACATTC
* * *
10180244 AATTATAATCTT-TCTTAACGTAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
317 AATTATAAT-TTGTCTTAACCTAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * * *
10180308 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGGATGAGTGAATATAAATGGACTTTTCTTGT
381 AAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTCAATATAAATGGACTTTTCTTGT
* *
10180373 CAATCGATGGCTTTCGCTTCACGTTTC
446 CAATCGATAGCTTTCGCTTAACGTTTC
10180400 TTANNNNNNN
Statistics
Matches: 409, Mismatches: 54, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
510 5 0.01
511 101 0.25
512 295 0.72
513 8 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (511 bp):
GTAAAAAAATACAACTTAAAATAAATTACCAAATTATAAAACCATGTAAAGTGAGTAATAAGGAT
TTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGAATTTTGCTTCACGTTTC
CCAAGGCAAACAGTCAATTATAATCTGTTTTAACAAAAAAGGTAAAAAAATTAAACTCAAAATAA
ATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTCGAAGGCATAAGTAATTATAAA
GGGACTTTTCTTACCAATCGATGGCTTTCACTTCATGTTTCCCGAGGCAAACATTCAATTATAAT
TTGTCTTAACCTAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTA
AAGCAAGTAATAAGGCTTTCAAAGGCATGAGTCAATATAAATGGACTTTTCTTGTCAATCGATAG
CTTTCGCTTAACGTTTCCTTTGGCAAACATTTATTATAATCTTTCTTAACTGAAAT
Found at i:10182608 original size:2 final size:2
Alignment explanation
Indices: 10182596--10182630 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
10182586 GTTGTTTGTG
10182596 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10182631 NNNNNNNNNN
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10199159 original size:77 final size:77
Alignment explanation
Indices: 10199016--10199179 Score: 193
Period size: 77 Copynumber: 2.1 Consensus size: 77
10199006 TAAATTTCTC
* **
10199016 AAATTAAAATGCTATCCTTAATTTTAGAAATTTCTTTTAAAGTAGGAAACAATTTCCTATTCTTT
1 AAATTAAAATGCTATCCTTAATTTTAGAAATTACTTTTAAAGTAAAAAACAATTTCCTATTCTTT
10199081 ATTAAGCAGCCA
66 ATTAAGCAGCCA
* * * * * ** *
10199093 AAATTTAAATTCTATCTTTAATTTTAGGAATTACTTTTAAAGTAAAAAATAATTTTTTATTTTTT
1 AAATTAAAATGCTATCCTTAATTTTAGAAATTACTTTTAAAGTAAAAAACAATTTCCTATTCTTT
* * **
10199158 ATGAATCATTCA
66 ATTAAGCAGCCA
10199170 AAATTAAAAT
1 AAATTAAAAT
10199180 AGATGACATT
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (77 bp):
AAATTAAAATGCTATCCTTAATTTTAGAAATTACTTTTAAAGTAAAAAACAATTTCCTATTCTTT
ATTAAGCAGCCA
Found at i:10200246 original size:28 final size:28
Alignment explanation
Indices: 10200214--10200268 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
10200204 TTTTTTTTTT
10200214 TAGAAAACAAAAAGACTAAAACAAGCCA
1 TAGAAAACAAAAAGACTAAAACAAGCCA
10200242 TAGAAAACAAAAAGACTAAAACAAGCC
1 TAGAAAACAAAAAGACTAAAACAAGCC
10200269 TAGCCAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.64, C:0.18, G:0.11, T:0.07
Consensus pattern (28 bp):
TAGAAAACAAAAAGACTAAAACAAGCCA
Found at i:10203270 original size:2 final size:2
Alignment explanation
Indices: 10203263--10203308 Score: 83
Period size: 2 Copynumber: 22.5 Consensus size: 2
10203253 NNNNNNNNNN
10203263 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
10203306 TA T
1 TA T
10203309 GTATTGATAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10206873 original size:30 final size:30
Alignment explanation
Indices: 10206837--10206898 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
10206827 AGGTTTGATG
*
10206837 AATATTAATATTTAATTTAAAATATTAAAA
1 AATATTAATATTGAATTTAAAATATTAAAA
10206867 AATATTAATATTGAATTTAAAATATTAAAA
1 AATATTAATATTGAATTTAAAATATTAAAA
10206897 AA
1 AA
10206899 GTTAAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (30 bp):
AATATTAATATTGAATTTAAAATATTAAAA
Found at i:10206888 original size:22 final size:22
Alignment explanation
Indices: 10206861--10206935 Score: 61
Period size: 22 Copynumber: 3.6 Consensus size: 22
10206851 ATTTAAAATA
*
10206861 TTAAAAAATATTAATATTGAA-
1 TTAAAAAATATTAATATTAAAC
* *
10206882 TT-TAAAATATTAA-A--AAAG
1 TTAAAAAATATTAATATTAAAC
*
10206900 TTAAAAAATATTAATATTTAAC
1 TTAAAAAATATTAATATTAAAC
* *
10206922 TAAAAAAATTTTAA
1 TTAAAAAATATTAA
10206936 CTTAAAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
17 2 0.05
18 2 0.05
19 11 0.26
20 11 0.26
21 2 0.05
22 14 0.33
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (22 bp):
TTAAAAAATATTAATATTAAAC
Found at i:10206954 original size:20 final size:20
Alignment explanation
Indices: 10206865--10206955 Score: 72
Period size: 19 Copynumber: 4.8 Consensus size: 20
10206855 AAAATATTAA
* *
10206865 AAAATATTAATATTGAATTT
1 AAAATATTAATATTTAACTT
* *
10206885 AAAATATTAA-A--AAAGTT
1 AAAATATTAATATTTAACTT
10206902 AAAAAATATTAATATTTAAC-T
1 --AAAATATTAATATTTAACTT
10206923 AAAA-A--AAT-TTTAACTT
1 AAAATATTAATATTTAACTT
10206939 AAAATATTAATATTTAA
1 AAAATATTAATATTTAA
10206956 ATTATTCAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
15 6 0.11
16 8 0.14
17 5 0.09
18 1 0.02
19 18 0.32
20 16 0.28
21 1 0.02
22 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AAAATATTAATATTTAACTT
Found at i:10207710 original size:12 final size:12
Alignment explanation
Indices: 10207686--10207717 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
10207676 ATGGCCGGCC
10207686 AAAGGAA-AACA
1 AAAGGAAGAACA
10207697 AAAGGAAGAACA
1 AAAGGAAGAACA
10207709 AAA-GAAGAA
1 AAAGGAAGAA
10207718 AAGAAGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.72, C:0.06, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAGGAAGAACA
Found at i:10209987 original size:13 final size:13
Alignment explanation
Indices: 10209969--10209993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10209959 TTCTAGAAAA
10209969 TTTATAAAATCAT
1 TTTATAAAATCAT
10209982 TTTATAAAATCA
1 TTTATAAAATCA
10209994 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:10211426 original size:27 final size:29
Alignment explanation
Indices: 10211372--10211429 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
10211362 TTTTTGAAAT
*
10211372 TTACACTTTTGCCCCTAAAAAGTCAAAAA
1 TTACACTTTTGCCCCTAAAAACTCAAAAA
*
10211401 TTACA-TTTTGCCCC-AAAAACTGAAAAA
1 TTACACTTTTGCCCCTAAAAACTCAAAAA
10211428 TT
1 TT
10211430 GCCCATAGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 13 0.48
28 9 0.33
29 5 0.19
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (29 bp):
TTACACTTTTGCCCCTAAAAACTCAAAAA
Found at i:10211619 original size:19 final size:19
Alignment explanation
Indices: 10211595--10211632 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10211585 TTGCCAAACC
*
10211595 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
10211614 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
10211633 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:10212257 original size:171 final size:170
Alignment explanation
Indices: 10211999--10212592 Score: 537
Period size: 172 Copynumber: 3.5 Consensus size: 170
10211989 GGAAAAGTTT
* * * ** * * * * **
10211999 ATTTATAGTTACTCATGCATTTGAAAGCCTTATTACTCGTTTTGAATGGCTTTATAAAT-TGATA
1 ATTTATAGTCACTCATACCTTCAAAAGACTTATTACTCGCTTTAAATGGTTTTAT-AATCACATA
** * * * * *
10212063 ATTGATTTTAAGTTGAATTTTTTTACCTTTTTAGTTAAAACATATTATAATTGAATATTCACCTC
65 ATTGATTTTAAGTTGTTTTTTTTTA-CTTTTTGGTTAAAATAGATTATAATTGAATGTTAACCTC
* * *
10212128 GAGAAATGTAAAGCGAAAGCCATTCATTGAAAAAAAAAGTCC
129 GAGAAACGTAAAGCAAAAGCCATCCATTGAAAAAAAAAGTCC
* * * * *
10212170 ATTTATAGTCACTCATACCTTCGAAAGCCTTATTGCTCGCTTTAAACGATTTTATAATCACATAA
1 ATTTATAGTCACTCATACCTTCAAAAGACTTATTACTCGCTTTAAATGGTTTTATAATCACATAA
* * * * *
10212235 TTGATTTTAAGTTGTTTTTTTTTTTGCATTTTGGTTGAAATAGATTATAATTGAATGTTTACCTA
66 TTGATTTTAAGTTG--TTTTTTTTTACTTTTTGGTTAAAATAGATTATAATTGAATGTTAACCTC
* * * ** * *
10212300 GGGAAACGTGAAGTTAAAA-CCATCCATTGGCAATAAAATTCC
129 GAGAAACGTAAAG-CAAAAGCCATCCATTGAAAAAAAAAGTCC
* * *
10212342 ATTTATAGTCACTCATACCTTCAAAAGACTTATTACTTGCTTTAAATGGTTTTATAACCCCATAA
1 ATTTATAGTCACTCATACCTTCAAAAGACTTATTACTCGCTTTAAATGGTTTTATAATCACATAA
** * * * * * *
10212407 TCAATTTTAAGTTATGTTTTATTTAATTTTTGGTTAAAATAGATCATAATTGAATGTTAACTTCA
66 TTGATTTTAAGTTGT-TTTTTTTTACTTTTTGGTTAAAATAGATTATAATTGAATGTTAACCTCG
* * * * *
10212472 AGAAACATAAAACAAAAGCTATCCATTGACAAACAAAAGTCT
130 AGAAACGTAAAGCAAAAGCCATCCATTGA-AAAAAAAAGTCC
* * * * * * *
10212514 ATTTATAGTCCCTCATGCCTTCAAAAGTCTCATTACTCACTTTAAATGGCTTTATAATCTA-ATT
1 ATTTATAGTCACTCATACCTTCAAAAGACTTATTACTCGCTTTAAATGGTTTTATAATC-ACATA
*
10212578 ATTGATTTTATGTTG
65 ATTGATTTTAAGTTG
10212593 AATTTTTTGA
Statistics
Matches: 336, Mismatches: 79, Indels: 15
0.78 0.18 0.03
Matches are distributed among these distances:
170 8 0.02
171 119 0.35
172 199 0.59
173 10 0.03
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (170 bp):
ATTTATAGTCACTCATACCTTCAAAAGACTTATTACTCGCTTTAAATGGTTTTATAATCACATAA
TTGATTTTAAGTTGTTTTTTTTTACTTTTTGGTTAAAATAGATTATAATTGAATGTTAACCTCGA
GAAACGTAAAGCAAAAGCCATCCATTGAAAAAAAAAGTCC
Found at i:10212913 original size:172 final size:172
Alignment explanation
Indices: 10212628--10213648 Score: 1224
Period size: 172 Copynumber: 6.0 Consensus size: 172
10212618 TATAATCTAA
* * **
10212628 TTATTATTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAA----AA---ATTCAACC-T
1 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTTACCTT
* * **
10212685 TTTGCTTAAAATAGGTCATAATTGAATATTTACCTCGAGAAATATGAAGTGAAAGCCATTCATTG
66 TTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATTG
* * * *
10212750 AGAAGAAAACTTCTTTTATAGTTACTCATGCCTTCAAAAGCC
131 AGAAAAAAACTTCATTTATAGTCACTCATGCCTTCGAAAGCC
* *
10212792 TTATTACTCGCTTTAAATGGTTTTATAATCTTATAATTGATTTTATGTTGAATTGTTTTTTACC-
1 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTTACCT
* * * * *
10212856 TTTTGGTTAAAATAGATAATAATTGAATATTTGCCTCAAGAAACGTGAAGCGAAAGCCATCCATT
65 TTTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATT
** * * * * *
10212921 GCCAAAAAAAGTTCATTTATAGTC-CAACATGTCTTCAAAAACC
130 GAGAAAAAAACTTCATTTATAGTCAC-TCATGCCTTCGAAAGCC
*
10212964 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTCATTTTAAGTTGAATTTTTTTTTACCT
1 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTTACCT
* * * * * * * * * **
10213029 TTTTGGTTCACACAGATTACAATTGAATGTTTACCTTGGGAAACATGAAGTGAAAGATATTCATT
65 TTTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATT
* ** * * *
10213094 AAGAGGAAAAGTTTATTTATAGTCACTCATGCCTTTGAAAGCC
130 GAGAAAAAAACTTCATTTATAGTCACTCATGCCTTCGAAAGCC
* * *
10213137 TTATTACTCGCTTTAAATGGTTTTATAATTTGATAATTGATTTTAAGTTGAATTTTTTTTACTTT
1 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTTACCTT
* * * * *
10213202 TTTAGTTAAAATAGATTATAATTGAATATTCACCTCG-GAAAACGTAAAGCGAAAGCCATTCATT
66 TTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAG-AAACGTGAAGTGAAAGCCATTCATT
* * * * *
10213266 GAAAAAAAAAGTCCATTTATAGTCATTCAAGCCTTCGAAAGCC
130 GAGAAAAAAACTTCATTTATAGTCACTCATGCCTTCGAAAGCC
* * * * *
10213309 TTATTACTCGCTTTAAACGGTTTTATAGTCACATAATTGATTTTAAGTTCAA-CTTTTTTACCTT
1 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTTACCTT
* * * * *
10213373 TTTGGCTAAAATAGATCATAATTGAATATTTGCCTTGGGAAACGTGAAATGAAAGCCATTCATTG
66 TTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATTG
* * * * *
10213438 AGAATAAAACTTCATTTATAATTACTTATGCCTTTGAAAGCC
131 AGAAAAAAACTTCATTTATAGTCACTCATGCCTTCGAAAGCC
10213480 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATAT-ATTTTAAGTTGAA-TTTTTTTACCT
1 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAAT-TGATTTTAAGTTGAATTTTTTTTACCT
*
10213543 TTTTGGTTAAAATAGATCACAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATT
65 TTTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATT
* *
10213608 GAGAAAAAAACTTCATTTATAATCATTCATGCCTTCGAAAG
130 GAGAAAAAAACTTCATTTATAGTCACTCATGCCTTCGAAAG
10213649 NNNNNNNNNN
Statistics
Matches: 720, Mismatches: 122, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
164 43 0.06
168 2 0.00
171 249 0.35
172 294 0.41
173 131 0.18
174 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (172 bp):
TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTTACCTT
TTTGGTTAAAATAGATCATAATTGAATATTTACCTCGAGAAACGTGAAGTGAAAGCCATTCATTG
AGAAAAAAACTTCATTTATAGTCACTCATGCCTTCGAAAGCC
Found at i:10213335 original size:345 final size:341
Alignment explanation
Indices: 10212704--10213648 Score: 1252
Period size: 345 Copynumber: 2.8 Consensus size: 341
10212694 AATAGGTCAT
* * *
10212704 AATTGAATATTTACCTCGAGAAATATGAAGTGAAAGCCATTCATTGAGAAGAAAACTTCT-TTTA
1 AATTGAATATTTACCTTGGGAAACATGAAGTGAAAGCCATTCATTGAGAAGAAAACTT-TATTTA
**
10212768 TAGTTACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTTATAATTGAT
65 TAGTTACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAAT-TTATAATTGAT
* * * *
10212833 TTTATGTTGAATTGTTTTTTACCTTTTGGTTAAAATAGATAATAATTGAATATTTGCCTCAAGAA
129 TTTAAGTTGAATT-TTTTTTACTTTTTGGTTAAAATAGATAATAATTGAATATTTACCTCGAGAA
* ** * * * *
10212898 ACGTGAAGCGAAAGCCATCCATTGCCAAAAAAAGTTCATTTATAGTCCA-ACATGTCTTCAAAAA
193 ACGTGAAGCGAAAGCCATTCATTGAAAAAAAAAGTTCATTTATAGT-CATTCATGCCTTCGAAAG
* * * *
10212962 CCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTCATTTTAAGTTGAATTTTTTTTTAC
257 CCTTATTACTCGCTTTAAACGGTTTTATAATCACATAATTCATTTTAAGTTCAA--CTTTTTTAC
* * * *
10213027 CTTTTTGGTTCACACAGATTAC
320 CTTTTTGGCTAAAACAGATCAC
* ** * * *
10213049 AATTGAATGTTTACCTTGGGAAACATGAAGTGAAAGATATTCATTAAGAGGAAAAGTTTATTTAT
1 AATTGAATATTTACCTTGGGAAACATGAAGTGAAAGCCATTCATTGAGAAGAAAACTTTATTTAT
*
10213114 AGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATTTGATAATTGATT
66 AGTTACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATTT-ATAATTGATT
* * *
10213179 TTAAGTTGAATTTTTTTTACTTTTTTAGTTAAAATAGATTATAATTGAATATTCACCTCG-GAAA
130 TTAAGTTGAATTTTTTTTAC-TTTTTGGTTAAAATAGATAATAATTGAATATTTACCTCGAG-AA
* * *
10213243 ACGTAAAGCGAAAGCCATTCATTGAAAAAAAAAGTCCATTTATAGTCATTCAAGCCTTCGAAAGC
193 ACGTGAAGCGAAAGCCATTCATTGAAAAAAAAAGTTCATTTATAGTCATTCATGCCTTCGAAAGC
* *
10213308 CTTATTACTCGCTTTAAACGGTTTTATAGTCACATAATTGATTTTAAGTTCAACTTTTTTACCTT
258 CTTATTACTCGCTTTAAACGGTTTTATAATCACATAATTCATTTTAAGTTCAACTTTTTTACCTT
* *
10213373 TTTGGCTAAAATAGATCAT
323 TTTGGCTAAAACAGATCAC
* * * * *
10213392 AATTGAATATTTGCCTTGGGAAACGTGAAATGAAAGCCATTCATTGAGAATAAAACTTCATTTAT
1 AATTGAATATTTACCTTGGGAAACATGAAGTGAAAGCCATTCATTGAGAAGAAAACTTTATTTAT
* * *
10213457 AATTACTTATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATAT-AT
66 AGTTACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAAT-TTATAAT-TGAT
* *
10213521 TTTAAGTTGAA-TTTTTTTACCTTTTTGGTTAAAATAGATCACAATTGAATATTTACCTCGAGAA
129 TTTAAGTTGAATTTTTTTTA-CTTTTTGGTTAAAATAGATAATAATTGAATATTTACCTCGAGAA
* * * *
10213585 ACGTGAAGTGAAAGCCATTCATTGAGAAAAAAACTTCATTTATAATCATTCATGCCTTCGAAAG
193 ACGTGAAGCGAAAGCCATTCATTGAAAAAAAAAGTTCATTTATAGTCATTCATGCCTTCGAAAG
10213649 NNNNNNNNNN
Statistics
Matches: 524, Mismatches: 67, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
342 102 0.19
343 147 0.28
344 16 0.03
345 259 0.49
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (341 bp):
AATTGAATATTTACCTTGGGAAACATGAAGTGAAAGCCATTCATTGAGAAGAAAACTTTATTTAT
AGTTACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATTTATAATTGATTT
TAAGTTGAATTTTTTTTACTTTTTGGTTAAAATAGATAATAATTGAATATTTACCTCGAGAAACG
TGAAGCGAAAGCCATTCATTGAAAAAAAAAGTTCATTTATAGTCATTCATGCCTTCGAAAGCCTT
ATTACTCGCTTTAAACGGTTTTATAATCACATAATTCATTTTAAGTTCAACTTTTTTACCTTTTT
GGCTAAAACAGATCAC
Found at i:10215488 original size:20 final size:21
Alignment explanation
Indices: 10215463--10215508 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10215453 TTGCTAGGGT
10215463 AAAATGATAAAT-AATTACTA
1 AAAATGATAAATAAATTACTA
* * *
10215483 AAAATGTTACATAAATTATTA
1 AAAATGATAAATAAATTACTA
10215504 AAAAT
1 AAAAT
10215509 AATACTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
AAAATGATAAATAAATTACTA
Found at i:10218449 original size:2 final size:2
Alignment explanation
Indices: 10218442--10218472 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10218432 AGACACCTTA
10218442 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10218473 ATAAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10218479 original size:4 final size:4
Alignment explanation
Indices: 10218472--10218505 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
10218462 ATATATATAT
10218472 AATA AAT- AATA AATA AATA AACTA AATA AATA AA
1 AATA AATA AATA AATA AATA AA-TA AATA AATA AA
10218506 AGTAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:10218499 original size:13 final size:12
Alignment explanation
Indices: 10218472--10218505 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
10218462 ATATATATAT
10218472 AATAAAT-AATA
1 AATAAATAAATA
10218483 AATAAATAAACTA
1 AATAAATAAA-TA
10218496 AATAAATAAA
1 AATAAATAAA
10218506 AGTAATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 2 0.10
13 12 0.57
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAATAAATA
Found at i:10218512 original size:13 final size:12
Alignment explanation
Indices: 10218470--10218525 Score: 51
Period size: 13 Copynumber: 4.5 Consensus size: 12
10218460 ATATATATAT
*
10218470 ATAATAAATAAT
1 ATAATAAATAAA
10218482 A-AATAAATAAA
1 ATAATAAATAAA
*
10218493 CTAAATAAATAAA
1 AT-AATAAATAAA
*
10218506 AGTAATAATTAAAA
1 A-TAATAAAT-AAA
10218520 ATAATA
1 ATAATA
10218526 NNNNNNNNNN
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
11 9 0.25
12 1 0.03
13 21 0.58
14 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (12 bp):
ATAATAAATAAA
Found at i:10223534 original size:2 final size:2
Alignment explanation
Indices: 10223527--10223553 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10223517 TTTTGGGATA
10223527 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
10223554 CATGTGAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10227089 original size:36 final size:36
Alignment explanation
Indices: 10227042--10227112 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
10227032 ATGTTCAAGC
* *
10227042 ATCTACAAGAA-TTAACAGTTTATATTTCATCATCAT
1 ATCTACAAGAATTTAAC-CTGTATATTTCATCATCAT
*
10227078 ATCTACAAGAATTTATCCTGTATATTTCATCATCA
1 ATCTACAAGAATTTAACCTGTATATTTCATCATCA
10227113 AATCAACCTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 27 0.87
37 4 0.13
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (36 bp):
ATCTACAAGAATTTAACCTGTATATTTCATCATCAT
Found at i:10230804 original size:99 final size:98
Alignment explanation
Indices: 10230637--10230819 Score: 253
Period size: 98 Copynumber: 1.9 Consensus size: 98
10230627 TATAGTAAAT
*
10230637 TTTAAAACTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAATAATTTAACAACAAAAATTA
1 TTTAAAACTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAAAAATTTAACAACAAAAA-TA
* *
10230702 AAAATTGTTTTCGTAATTAAACAAATTTAGAAAA
65 AAAAATGTTTTAGTAATTAAACAAATTTAGAAAA
* * **
10230736 TTTAAAATTATTTAAATTAATTAAGGTTTTATTAAA-TAATGAAAAAATTTAACTAA-TGAAATG
1 TTTAAAACTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAAAAATTTAAC-AACAAAAAT-
*
10230799 AAAAAATGTTTTAGTATTTAA
64 AAAAAATGTTTTAGTAATTAA
10230820 GCAATTAATT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
97 1 0.01
98 37 0.50
99 36 0.49
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.40
Consensus pattern (98 bp):
TTTAAAACTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAAAAATTTAACAACAAAAATAA
AAAATGTTTTAGTAATTAAACAAATTTAGAAAA
Found at i:10230845 original size:99 final size:99
Alignment explanation
Indices: 10230637--10230854 Score: 253
Period size: 99 Copynumber: 2.2 Consensus size: 99
10230627 TATAGTAAAT
* * *
10230637 TTTAAAACTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAATAATTTAACAACAAAAATTA
1 TTTAAAATTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAAAAATTTAACAACAAAAATGA
* * *
10230702 AAAATTGTTTTCGTAATTAAACAAATTTAGAAAA
66 AAAAATGTTTTAGTAATTAAACAAATTAAGAAAA
* **
10230736 TTTAAAATTATTTAAATTAATTAAGGTTTTATTAAA-TAATGAAAAAATTTAACTAA-TGAAATG
1 TTTAAAATTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAAAAATTTAAC-AACAAAAATG
* * **
10230799 AAAAAATGTTTTAGTATTTAAGC-AATTAATTAAA
65 AAAAAATGTTTTAGTAATTAAACAAATTAAGAAAA
* *
10230833 TTAGTAATATTATTTAACTTAA
1 TT--TAAAATTATTTAAATTAA
10230855 AAAATATTTA
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
97 10 0.10
98 39 0.39
99 52 0.51
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.40
Consensus pattern (99 bp):
TTTAAAATTATTTAAATTAATTAAGCTTTTATTAAATTAATGAAAAAATTTAACAACAAAAATGA
AAAAATGTTTTAGTAATTAAACAAATTAAGAAAA
Found at i:10230942 original size:116 final size:114
Alignment explanation
Indices: 10230734--10231303 Score: 396
Period size: 116 Copynumber: 4.9 Consensus size: 114
10230724 AAATTTAGAA
* * ** * * * * * * *
10230734 AATTTAAAATTATTTAAATTAATTAAGGTTTTATTAAATAATGAAAAAATTTAACTAATGAAATG
1 AATTAAAAAATATTTAAATTAATTAAGGTTGAATGAATTAATTAAATAATTTAGCTAATTAAGT-
** * *
10230799 AA-AAAATGTTTTAGTATTTAAGCAATTAATTAAATTAGTAATATTATTT
65 AATGTAATGTGTTAGTAATTAAGCAATTAATTAAATTAGTAATATTATTT
* ** *
10230848 AACTTAAAAAATATTTAACTTAATTAAGGTGTGAATGAGGTAATTAAATAATTTAGTTAATTAAG
1 AA-TTAAAAAATATTTAAATTAATTAAGGT-TGAATGAATTAATTAAATAATTTAGCTAATTAAG
** * * *
10230913 TAATGTAATGTGTTAGTAATTAAAAAATTAATTTAATAAGTAATATTATAT
64 TAATGTAATGTGTTAGTAATTAAGCAATTAATTAAATTAGTAATATTATTT
*** ** * * ** * * *
10230964 AATATTTTATTTATTTAAATGAAGTT-TGGCTTGAGGGAATTAATTACATTATTTAACTAATTAA
1 AAT-TAAAAAATATTTAAATTAA-TTAAGG-TTGAATGAATTAATTAAATAATTTAGCTAATTAA
* * * * **
10231028 --AAAGAATCATGTATTAGTAATTAAGCAATTAATTAAATTAGT-GTATGTAGTCA
63 GTAATG--TAATGTGTTAGTAATTAAGCAATTAATTAAATTAGTAATAT-TA-TTT
* * ** * * * * * * *
10231081 AATTTAAAATTATTTAAATTAATTAAAATTTTATTAAATAAATGAAATAATTTAGCTAATCAAAT
1 AATTAAAAAATATTTAAATTAATT-AAGGTTGAATGAATTAATTAAATAATTTAGCTAAT-TAAG
** * *
10231146 TAA-AAAATGTTTTAGTAATTAAGCAATTAATTAAATTAGTAGTATTATTT
64 TAATGTAATGTGTTAGTAATTAAGCAATTAATTAAATTAGTAATATTATTT
* * * *
10231196 AATTTAAATAATATTTAAATTAATTAAGGTGGTAATGAGTTAATTAAATAATTTAGTTAATTAAG
1 AA-TTAAAAAATATTTAAATTAATTAAGGTTG-AATGAATTAATTAAATAATTTAGCTAATTAAG
* **
10231261 TAATGCAATGTGTTAGTAATTAAGCAATTAAAGAAATTAGTAA
64 TAATGTAATGTGTTAGTAATTAAGCAATTAATTAAATTAGTAA
10231304 ATTCAGTAAA
Statistics
Matches: 344, Mismatches: 93, Indels: 36
0.73 0.20 0.08
Matches are distributed among these distances:
114 5 0.01
115 43 0.12
116 281 0.82
117 13 0.04
119 2 0.01
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.41
Consensus pattern (114 bp):
AATTAAAAAATATTTAAATTAATTAAGGTTGAATGAATTAATTAAATAATTTAGCTAATTAAGTA
ATGTAATGTGTTAGTAATTAAGCAATTAATTAAATTAGTAATATTATTT
Found at i:10234591 original size:2 final size:2
Alignment explanation
Indices: 10234584--10234620 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
10234574 TATAAGATGC
* *
10234584 AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10234621 AAATTAAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:10235390 original size:17 final size:17
Alignment explanation
Indices: 10235343--10235420 Score: 54
Period size: 18 Copynumber: 4.4 Consensus size: 17
10235333 ATCACGTCAT
*
10235343 TTTTTTCTCTTTTTTTC
1 TTTTTTCTATTTTTTTC
*
10235360 TTTTATT-TAATTTTTTCC
1 TTTT-TTCT-ATTTTTTTC
10235378 TTTTTTCT-TTTTTTCTC
1 TTTTTTCTATTTTTT-TC
*
10235395 TCTTCTTTCT-TATTCTTTC
1 T-TT-TTTCTAT-TTTTTTC
10235414 TTTTTTC
1 TTTTTTC
10235421 CATCTTTGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
16 6 0.12
17 13 0.26
18 18 0.36
19 9 0.18
20 4 0.08
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTCTATTTTTTTC
Found at i:10243028 original size:18 final size:19
Alignment explanation
Indices: 10242985--10243029 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
10242975 TAGCTAAGGT
10242985 AAAAA-AAATGATATAGGA
1 AAAAATAAATGATATAGGA
* *
10243003 ATAAATAAATGAT-TAGTA
1 AAAAATAAATGATATAGGA
10243021 AAAAATAAA
1 AAAAATAAA
10243030 AAAGGGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (19 bp):
AAAAATAAATGATATAGGA
Found at i:10243612 original size:2 final size:2
Alignment explanation
Indices: 10243605--10243642 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
10243595 ATAAAGGCAA
* *
10243605 AT AT AT AT AT AT AT AT AT AT AT A- AT AA AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10243643 CATAAATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:10245876 original size:29 final size:29
Alignment explanation
Indices: 10245815--10245878 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
10245805 GTAAATTTTT
**
10245815 AAAAATTACACTTTTACCCCCGTAAAGTG
1 AAAAATTACACTTTTACCCCCAAAAAGTG
* *
10245844 AAAAATTACATTTTTA-CCCCAAAAATTG
1 AAAAATTACACTTTTACCCCCAAAAAGTG
10245872 AAAAATT
1 AAAAATT
10245879 GCCCATAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.30
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCCAAAAAGTG
Found at i:10246815 original size:10 final size:10
Alignment explanation
Indices: 10246802--10246865 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 10
10246792 AATAAAAAAT
*
10246802 AATAGTAATA
1 AATAATAATA
10246812 AATAATAATA
1 AATAATAATA
10246822 AA-AATAAT-
1 AATAATAATA
*
10246830 AGTAATAATA
1 AATAATAATA
* *
10246840 ATTCA-AATA
1 AATAATAATA
*
10246849 TAT-ATAATA
1 AATAATAATA
10246858 AATAATAA
1 AATAATAA
10246866 ATTTGTGAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 2 0.05
9 23 0.53
10 18 0.42
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (10 bp):
AATAATAATA
Found at i:10246829 original size:25 final size:25
Alignment explanation
Indices: 10246796--10246865 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
10246786 ATTCAAAATA
10246796 AAAAATAATAGTAATAAATAATAAT
1 AAAAATAATAGTAATAAATAATAAT
10246821 AAAAATAATAGTAAT-AATAAT--T
1 AAAAATAATAGTAATAAATAATAAT
*
10246843 -CAAATATATA-TAATAAATAATAA
1 AAAAATA-ATAGTAATAAATAATAA
10246866 ATTTGTGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
21 9 0.22
22 10 0.25
24 6 0.15
25 15 0.38
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (25 bp):
AAAAATAATAGTAATAAATAATAAT
Found at i:10246858 original size:3 final size:3
Alignment explanation
Indices: 10246767--10246841 Score: 52
Period size: 3 Copynumber: 25.3 Consensus size: 3
10246757 TCAAAAAAAG
*
10246767 TAA TAA -AA T-A TAA TAA TAGA TTCAA -AA TAA -AA -AA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TA-A -T-AA TAA TAA TAA TAA TAA TAA TAA
* *
10246810 TAAA TAA TAA TAA AAA TAA TAG TAA TAA TAA T
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10246842 TCAAATATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
2 10 0.17
3 41 0.71
4 4 0.07
5 2 0.03
6 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:10252645 original size:50 final size:50
Alignment explanation
Indices: 10252570--10252671 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
10252560 CCAAGTGTTG
10252570 TTGAAAGTGGAGTAGAAATAGAAAATAAAAGAAAAGAAGAGAGATTTTTC
1 TTGAAAGTGGAGTAGAAATAGAAAATAAAAGAAAAGAAGAGAGATTTTTC
* *
10252620 TTGAAGGTGGAGTAGAAATAGAAAATAAAGGAAAAGAAGAGAGATTTTTC
1 TTGAAAGTGGAGTAGAAATAGAAAATAAAAGAAAAGAAGAGAGATTTTTC
10252670 TT
1 TT
10252672 TCTCTCTCCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.49, C:0.02, G:0.25, T:0.24
Consensus pattern (50 bp):
TTGAAAGTGGAGTAGAAATAGAAAATAAAAGAAAAGAAGAGAGATTTTTC
Found at i:10252771 original size:21 final size:21
Alignment explanation
Indices: 10252746--10252789 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10252736 AAGTTAGGAG
*
10252746 AAGGAAGGAGTAAGAAAA-GAA
1 AAGGAAGGA-AAAGAAAATGAA
10252767 AAGGAAGGAAAAGAAAATGAA
1 AAGGAAGGAAAAGAAAATGAA
10252788 AA
1 AA
10252790 TCTTGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.05
Consensus pattern (21 bp):
AAGGAAGGAAAAGAAAATGAA
Found at i:10254550 original size:341 final size:340
Alignment explanation
Indices: 10253927--10257864 Score: 3338
Period size: 341 Copynumber: 11.5 Consensus size: 340
10253917 NNNNNNNNNN
* *
10253927 CATAATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAGAAAGGTTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
* * * * * * *
10253992 CCTTGAGAAACGTGAAGCGAAATCCATCGATTGACAAGAAAAGTCTATTTATAATCACTCATGCC
66 CCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGCC
* * * *
10254057 ATT-GAAAGCCTTATTACTCACTTTAAATGG-TTTGTAAT-TTGATTATTAATTTTGAGTTGAGT
131 -TTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTT-ATTATTGATTTT-AGTTGAAT
* * * * * *
10254119 TTTTTTATATTTTTTGTTAAAACAGATTGTAATTGAATGTTTACCTCGGGAAA-GATGAGACTAA
193 TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACG-TGAGGCTAA
** * * * * * * *
10254183 AAAACTCCGTTGACAAGAAAAGTCCATGTATAGTCACTCATACCTTCAAAAGGCTTATAACTCAC
257 AACTCTTCATTGA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGC
*
10254248 TTAAAATGGCTTTATAATCT
321 TTAAAATGGTTTTATAATCT
* * * **
10254268 CATAATTAATTTGAAGTTGAAATTTTTTACATTTTTGGTTAAGAAAGGCTATAATTGAAT-TTTA
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
* * *
10254332 TCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTTGAAAAGTCCATTTATAGTCTCTCATGCC
66 CCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGCC
** ** *
10254397 TTCGAAAGCCTTGCTACTTGCTTTAAATGGTTTTATAATCTTATTATTGACTTTT-GTTTGAATT
131 TTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGA-TTTTAG-TTGAATT
* * * ** *
10254461 CTTTTGCATTTTTGGTTAAAACAGATTATAATTGAATCTTTGGCTAGAGAAACGCGAGGCTAAAA
194 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAGGCTAAAA
* * * * * *
10254526 CCCTTCACTGAAAGGAAAAGTCCATTTATAGTCAATCATGCCATCAAAAGTCTTATTACTCACTT
259 CTCTTCATTGAAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTT
10254591 AAAATGGTTTTATAATCT
323 AAAATGGTTTTATAATCT
* * * *
10254609 CATTATTGATTTTAACTTGAATTTTATTAC-TTTTTCGGTTAA-AGCAGATTATAATTGAATGTT
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTT-GGTTAAGA-AAGATTATAATTGAATGTT
* * * ** * * * * * *
10254672 TACTTCGGGAAATGTGGGGCTAAAACCCT-TCG-TT-AATAGAAAAAGTTCATTTGTAGTCACTC
64 TACCTCGAGAAACGTGAAGC-GAAA-GCTATAGATTGACTAG-AAAAGTCCATTTATAGTCACTC
* * * *
10254734 ATGCCTTC-AGAAGCCTTATTAGTCGCTTAAAATAGTTTTAGAATATCTTA--ATTGATTTTAAG
126 ATGCCTTCGA-AAGCCTTATTACTCACTTAAAATGGTTTTA-TA-ATCTTATTATTGATTTT-AG
* * * * *
10254796 TTGAATTTTTTTACAATTTTGGCTAAGAA-AGGTTATAATTTCAA-GTTTACCTTGAGAAACGTG
187 TTGAATTTTTTTACATTTTTGGTTAA-AACAGATTATAA-TTGAATGTTTACCTAGAGAAACGTG
* * ** * **
10254859 AAGCGAAGGCTCTTGATT-AACTAGAAAAGTCCATTTATAGTCACAT-ATGCCTTCGTAAGCCTT
250 AGGCTAAAACTCTTCATTGAA--AGAAAAGTCCATTTATAGTCAC-TCATGCCTTCAAAAGCCTT
* * * *
10254922 ATTACTTGTTTAAAATGG-TTTGTACTCT
312 ATTACTCGCTTAAAATGGTTTTATAATCT
* * * * * ** *
10254950 GATTATTTATTTAAAGTTGAATTTTTTTAAATTTGTT-GTTCAA-ACTGATTGTAATTGAATGTT
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTT-TTGGTT-AAGAAAGATTATAATTGAATGTT
* * * * * * * * *
10255013 TACCTTGGGAAACGTGAGGCTAAAAC-ACTCCG-TTGACAAGAAAAGTCCATGTATAGTTA-TGC
64 TACCTCGAGAAACGTGAAGCGAAAGCTA-T-AGATTGACTAGAAAAGTCCATTTATAGTCACT-C
** * * * *
10255075 ATGCCTTTAAAAGCCTTATAACTCACTTAAAATGGCTTTATAATCTCATAATTGATTTTAAGTTG
126 ATGCCTTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTT-AGTTG
* * *
10255140 AATTTTTTTACATTTTTGGTTAAGAA-AGGTTATAATTGAATGTTTACCTAGAGAAAAGTGAAGC
190 AATTTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAGGC
* * ** * * * * * *
10255204 AAAAACTATAGATTGGATAGAAAAGTGCATTTATAGTCACTTATGCCTTCGAAAGCCTTACTCCT
254 TAAAACTCTTCATT-GAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACT
*
10255269 CGCTTTAAATGGTTTTATAATCT
318 CGCTTAAAATGGTTTTATAATCT
* * * * * * * * *
10255292 TATTATTGACTTTAGGTTGAATTCTCTTGCATTTTTAGTTAA-AACAGATTATAATTGAATCTTT
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAA-AGATTATAATTGAATGTTT
** * * * * ** ** * * * *
10255356 GGCTCGAGAAACGCGAGGCTAAAACCCTTCACTGA-AAGGAAAAGTCTATTTATAGTCAATCATG
65 ACCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTA-GAAAAGTCCATTTATAGTCACTCATG
* * *
10255420 CCATT-GAAA-CTCTTATTACTCACTTAAAATGG-TTTATAATGTCATTATTGATTTTAAGTTAA
129 CC-TTCGAAAGC-CTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTT-AGTTGA
* * * * * * *
10255482 ATTTTCTTACATTTTCGGTTAAAGCAGATTATAATTGAAAGTTTACCTCGAGAAATGTGAGGTTA
191 ATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAGGCTA
* * * *
10255547 AAAC-CCTC-TGTTAATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTATTAGT
256 AAACTCTTCAT-TGAA-A-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACT
* * *
10255610 CGCTTAAAATAGTTTTAGAATAT
318 CGCTTAAAATGGTTTTATAATCT
* * * * * * *
10255633 CTTAATTGATTTTAAGTTGAATTTTTTTATAATTTTGGCTAAGAAAGGTTATAATTAAATGTTTC
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
* * * * * * *
10255698 CCTTGAGAAACGTGAAGC-AAAGGCTATTGATTAACTAGAAAAGTTCACTTATAGTCACACATAC
66 CCTCGAGAAACGTGAAGCGAAA-GCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
10255762 CTTCGGAAGCCTTATTACTCGCTTAAAATGG-TTTGTAATCTGATTATTGATTTTAAGTTGAATT
130 CTTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTT-AGTTGAATT
* * ** * * *
10255826 TATTTATATTTTTTATTCAAACAGATTGTAATTGAATGTTTACCTCGAGAAACGTGAGGCTAAAA
194 TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAGGCTAAAA
* * * * * * * *
10255891 CACTCCGTTGACAA-AACAAGTCCATGTATAGTTACTCATGGCTTCAAAAGCCTTATAACTCACT
259 CTCTTCATTGA-AAGAA-AAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCT
*
10255955 TAAAATGGCTTTATAATCT
322 TAAAATGGTTTTATAATCT
* *
10255974 CATAATTGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAGAAAGGTTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
*
10256039 CTTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACT-ATGCC
66 CCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGCC
* * * * * * *
10256103 TTCGAAAGCCTTACTACTCGCTTTAAATAGTTTTAT-ATCTTATTATTGACTTTAGGTTCAATTC
131 TTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTTA-GTTGAATTT
* * ** * ** *
10256167 TCTTGCATTTTTTATTAAAACATATTATAATTGAATGTTTGTCTGGAGAAACGTGAGGCTAAAAC
195 TTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAGGCTAAAAC
* * * * *
10256232 TTTTCATTGAAAGGAAAAGTCCATTTATAGTCAATCATGCCTTCAACAGACTTATTACTCACTTA
260 TCTTCATTGAAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
*
10256297 AAATGGTTTTATAATCA
324 AAATGGTTTTATAATCT
* * * *
10256314 AATAATTGATTTTAAGTTGATTTTTTTTAAATTTTTGGTTAAAGCATA-A-TATAATTGAATGTT
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-AAG-AAAGATTATAATTGAATGTT
* * * * * *
10256377 TACCTC-AGGAAATGTGAGGCTAAAAC-ATTCCG-TT-AATAGGAAAAGTCCATTTATAGTCACT
64 TACCTCGA-GAAACGTGAAGCGAAAGCTA-T-AGATTGACTA-GAAAAGTCCATTTATAGTCACT
* * * * * *
10256438 CATGTCTT-TAGAAGCCTTATTAGTCGCTTAAAATAGTTTTATAATCTTATAATTGATTTTAAGT
125 CATGCCTTCGA-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTT-AGT
* * * *
10256502 TGAATTTTTTTACAATTTTGGTTAAGAA-AGGTTATAATTGAATGTTTACCTTGAGAAACGTGAA
188 TGAATTTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAG
* * **
10256566 GC-AAAA-TCTATAGATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTTGAAAGCCTTAT
252 GCTAAAACTCT-T-CATTGA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTAT
* * * *
10256629 TACTCGCTTTATATGG-TTTGTAATTT
314 TACTCGCTTAAAATGGTTTTATAATCT
* * ** * * * * *
10256655 GATTATTGATTTTAAGTTGTGTTTTTTTATATTTTTTGTTAA-AACAGATTGTAATTGGATGATT
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAA-AGATTATAATTGAATGTTT
* * ** * *
10256719 ACCTCGGGAAACGTG-AGACTAAAAGACT-CCG-TTGACAAGAAAAGTCCATGTATAGTCACTCA
65 ACCTCGAGAAACGTGAAG-C-GAAAG-CTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCA
* * * * * * * * *
10256781 TACCTTCAAAAGCCTTATAACTCACTTAAAATGGCTTTATAATCTCATAATTAATTTAAAGTTAA
127 TGCCTTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTT-TAGTTGA
* ** *
10256846 ATTTTCTTACATTTTTGGTTAAGAA-AGGCTATAATTGAAT-TTTACCTCA-AGAAACGTGAAGC
191 ATTTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAGGC
* ** * * * * *
10256908 -AAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCTCTTATGCCTTCGAAAGCCTTACTAC
254 TAAAA-CTCTTCATTGA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC
*
10256972 TCGCTTTAAATGGTTTTATAATCT
317 TCGCTTAAAATGGTTTTATAATCT
* * * * ** * * *
10256996 TATTATTGACTTTAGGTTGAATTTTCGTGCATTTTTAGTTAA-AACATATTATAATTGAATGTTT
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAA-AGATTATAATTGAATGTTT
* * * * * ** * * *
10257060 ACCAT-GAGAAACCTGAGGCTAAAACCCT-TA-ACTGAAAAAAAAAAGTCTATTTATAGTCAATC
65 ACC-TCGAGAAACGTGAAGC-GAAA-GCTATAGATTG-ACTAGAAAAGTCCATTTATAGTCACTC
* * * *
10257122 ATGCCTTCAGCAA-TCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
126 ATGCCTTC-GAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTT-AGTT
* * * * *
10257186 GAATTTTTTTACATTTTCGGTTAAAGCAGATTATAATTGAATGTTTACCTCAGA-AAATGTCAAG
189 GAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAGG
* * *
10257250 CTAAAACCCTCCGTT-AATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA
253 CTAAAACTCTTCATTGAA-A-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTA
* * *
10257314 GTCGCTTAAAATAGG-TTTAGAATAT
316 CTCGCTTAAAAT-GGTTTTATAATCT
* * * * *
10257339 CTTAATTAATTTTAAGTTGAATTTTTTTACAATTTTGGGTAAGAAAGACTATAATTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
* * * * * ** *
10257404 CCTAGAGAAACCTGAAGCGAAAGCTATAGACTAACTAGAAAAGTCCACTTATAGTCAGACATTCC
66 CCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
10257469 TTC-AGAAGGCTTATTACTCACTTAAAATGG-CTTGTAAT-TTGATTATTGATTTTAAGTTGAAT
131 TTCGA-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTT-ATTATTGATTTT-AGTTGAAT
* * * * *
10257531 TTTTTTATATTTTTTGTTCAAACAGATTGTAATTGAATGTTGACCTCAG-GAAACGTGAGGCTAA
193 TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT-AGAGAAACGTGAGGCTAA
* * * * * * *
10257595 AACACTCCGTTGATAAGAAAAGTCCATGTATTGTCACTCATGCCTTCAAAAGCCTTATAACTCAC
257 AACTCTTCATTGA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGC
* *
10257660 TGAAAATGGCTTTATAATCT
321 TTAAAATGGTTTTATAATCT
* * * * * *
10257680 CGTAATTAATTTTAAATTAAATTTTTTTACATTTTTGGTTAAGAAAGGTTATAGTTGAATGTTTA
1 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
* * * *
10257745 CCTCGAGAAACGTGAAGCGAAAGTTATAGATTAAATAGAAAAGTCCATTTATAGTCACTAATG--
66 CCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGCC
* *
10257808 TT-GTTAAATGCTTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTA
131 TTCG--AAA-GCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTTA
10257865 AGTTAAGNNN
Statistics
Matches: 2927, Mismatches: 545, Indels: 250
0.79 0.15 0.07
Matches are distributed among these distances:
338 1 0.00
339 21 0.01
340 471 0.16
341 1593 0.54
342 645 0.22
343 179 0.06
344 17 0.01
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (340 bp):
CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGATTATAATTGAATGTTTA
CCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACTCATGCC
TTCGAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTTATTATTGATTTTAGTTGAATTTT
TTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGTGAGGCTAAAACT
CTTCATTGAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAA
ATGGTTTTATAATCT
Found at i:10255007 original size:512 final size:508
Alignment explanation
Indices: 10253931--10257868 Score: 3279
Period size: 512 Copynumber: 7.7 Consensus size: 508
10253921 NNNNNNCATA
* * * *
10253931 ATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAGAAAGGTTATAATTGAATGTTTACCTT
1 ATTGATTTTAAGTTGAATTTTTTTAC-ATTTTTGTTAA-ACAGATTATAATTGAATGTTTACCTA
* * * * * *
10253996 GAGAAACGTGAAGC-GAAATCCATCGATTGACAAGAAAAGTCTATTTATAATCACTCATGCCATT
64 GAGAAACGTGAGGCTAAAACCCTTC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TT
* * * * * * * *
10254060 -GAAAGCCTTATTACTCACTTTAAATGG-TTTGTAATTTGATTATTAATTTTGAGTTGAGTTTTT
127 CAAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTT
* * * * * *
10254123 TTATATTTTTTGTTAAAACAGATTGTAATTGAATGTTTACCTCGGGAAA-GATGAGACTAAAAAA
192 TTA-CTTTTTGGTTAAAGCAGATTATAATTGAATGTTTACCTCGGGAAACG-TGAGGCTAAAACA
* * * * * *
10254187 CTCCGTTGACA-AGAAAAGTCCATGTATAGTCACTCATACCTTCAAAAGGCTTATAACTCACTTA
255 CTTCGTTGA-ATAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
* * * * * * * *
10254251 AAATGGCTTTATAATCTCATAATTAATTTGAAGTTGAAATTTTTTACATTTTTGGTTAAGAAAGG
319 AAATGGTTTTAGAATATCTTAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGA
* * *
10254316 CTATAATTGAAT-TTTATCTCGAGAAACGTGAAGCGAAAGCTATAGATTGACTTGAAAAGTCCAT
384 CTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTATAGATTAACTAGAAAAGTCCAT
* ** * *
10254380 TTATAGTCTCTCATGCCTTCGAAAGCCTTGCTACTTGCTTTAAATGGTTTTATAATCTTATT
449 TTATAGTCACTCATGCCTTCG-AAGCCTTATTACTCGCTTAAAATGG-TTTATAATCTTATT
* * * **
10254442 ATTGACTTTT--GTTTGAATTCTTTTGCATTTTTGGTTAAAACAGATTATAATTGAATCTTTGGC
1 ATTGA-TTTTAAG-TTGAATTTTTTTACATTTTT-GTT-AAACAGATTATAATTGAATGTTTACC
* * * *
10254505 TAGAGAAACGCGAGGCTAAAACCCTTCACTGA-AAGGAAAAGTCCATTTATAGTCAATCATGCCA
62 TAGAGAAACGTGAGGCTAAAACCCTTCATTGACAA-GAAAAGTCCATTTATAGTCACTCATGCCT
* *
10254569 TCAAAAGTCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAACTTGAATTTT
126 TCAAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT
* * * * *
10254634 ATTACTTTTTCGGTTAAAGCAGATTATAATTGAATGTTTACTTCGGGAAATGTGGGGCTAAAACC
191 TTTACTTTTT-GGTTAAAGCAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAAACA
* * * *
10254699 CTTCGTT-AATAGAAAAAGTTCATTTGTAGTCACTCATGCCTTCAGAAGCCTTATTAGTCGCTTA
255 CTTCGTTGAATAG-AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
* * * *
10254763 AAATAGTTTTAGAATATCTTAATTGATTTTAAGTTGAATTTTTTTACAATTTTGGCTAAGAAAGG
319 AAATGGTTTTAGAATATCTTAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGA
* * * * * *
10254828 TTATAATTTCAA-GTTTACCTTGAGAAACGTGAAGCGAAGGCTCTTGATTAACTAGAAAAGTCCA
384 CTATAA-TTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTATAGATTAACTAGAAAAGTCCA
* * * * *
10254892 TTTATAGTCACAT-ATGCCTTCGTAAGCCTTATTACTTGTTTAAAATGGTTTGTACTCTGATT
448 TTTATAGTCAC-TCATGCCTTCG-AAGCCTTATTACTCGCTTAAAATGGTTTATAATCTTATT
* * * * * *
10254954 ATTTATTTAAAGTTGAATTTTTTTAAATTTGTTGTTCAAACTGATTGTAATTGAATGTTTACCTT
1 ATTGATTTTAAGTTGAATTTTTTTACATTT-TTGTT-AAACAGATTATAATTGAATGTTTACCTA
* * * * * * *
10255019 GGGAAACGTGAGGCTAAAACACTCCGTTGACAAGAAAAGTCCATGTATAGTTA-TGCATGCCTTT
64 GAGAAACGTGAGGCTAAAACCCTTCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTC
* * *
10255083 AAAAGCCTTATAACTCACTTAAAATGGCTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
128 AAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * *
10255148 TACATTTTTGGTT-AAGAAAGGTTATAATTGAATGTTTACCTAGAGAAAAGTGAAGC-AAAA-AC
193 TAC-TTTTTGGTTAAAG-CAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAAACAC
* * * * * * * *
10255210 TATAGATTGGATAGAAAAGTGCATTTATAGTCACTTATGCCTTCGAAAGCCTTACTCCTCGCTTT
256 T-TCG-TTGAATAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
* * * * * * *
10255275 AAATGGTTTTA-TA-ATCTTATTATTGACTTTAGGTTGAATTCTCTTGCATTTTTAGTTAA-AAC
319 AAATGGTTTTAGAATATCTTA--ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAA-
* * ** * * * * ** ** *
10255337 AGATTATAATTGAATCTTTGGCTCGAGAAACGCGAGGCTAAAACCCTTCACTGAA--AGGAAAAG
381 AGACTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTATAGA-TTAACTA-GAAAAG
* * * * * *
10255400 TCTATTTATAGTCAATCATGCCATT-GAAACTCTTATTACTCACTTAAAATGGTTTATAATGTCA
444 TCCATTTATAGTCACTCATGCC-TTCGAAGC-CTTATTACTCGCTTAAAATGGTTTATAATCTTA
10255464 TT
507 TT
* * * * *
10255466 ATTGATTTTAAGTTAAATTTTCTTACATTTTCGGTTAAAGCAGATTATAATTGAAAGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTT-TGTTAAA-CAGATTATAATTGAATGTTTACCTA
* * * * * *
10255531 GAGAAATGTGAGGTTAAAACCC-TCTGTTAATAGGAAAAGTCCATTTATAGTCACTCATGCCTTC
64 GAGAAACGTGAGGCTAAAACCCTTC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
10255595 AGAAGCCTTATTAGTCGCTTAAAATAGTTTTAGAATATC-TTAATTGATTTTAAGTTGAATTTTT
128 AAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT-ATTGATTTTAAGTTGAATTTTT
* * * * * * * * *
10255659 TTA-TAATTTTGGCT-AAGAAAGGTTATAATTAAATGTTTCCCTTGAGAAACGTGAAGC-AAAGG
192 TTACT--TTTTGGTTAAAG-CAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAA-A
* * * * **
10255721 CTA-TT-GATT-AACTAGAAAAGTTCACTTATAGTCACACATACCTTCGGAAGCCTTATTACTCG
253 C-ACTTCG-TTGAA-TAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCG
* * * * **
10255783 CTTAAAATGG-TTT-GTA-ATCTGATTATTGATTTTAAGTTGAATTTATTTATATTTTTTATTCA
315 CTTAAAATGGTTTTAGAATATCT--TAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-A
* * * * * * * * *
10255845 A-ACAGATTGTAATTGAATGTTTACCTCGAGAAACGTGAGGCTAAAAC-ACTCCG-TTGAC-AAA
377 AGAAAGACTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTA-T-AGATTAACTAGA
* * * * * *
10255906 ACAAGTCCATGTATAGTTACTCATGGCTTCAAAAGCCTTATAACTCACTTAAAATGGCTTTATAA
440 A-AAGTCCATTTATAGTCACTCATGCCTTC-GAAGCCTTATTACTCGCTTAAAATGG-TTTATAA
* *
10255971 TCTCATA
502 TCTTATT
* * * * *
10255978 ATTGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAGAAAGGTTATAATTGAATGTTTACTTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAA-ACAGATTATAATTGAATGTTTACCTA
* * * ** ** * *
10256043 GAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACT-ATGCCTTCG
64 GAGAAACGTGAGGCTAAAACCCTTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
* * * * * * * * * *
10256107 AAAGCCTTACTACTCGCTTTAAATAGTTTTAT-ATCTTATTATTGACTTTAGGTTCAATTCTCTT
129 AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTT
* ** * * ** **
10256171 GCATTTTTTATTAAAACATATTATAATTGAATGTTTGTCT-GGAGAAACGTGAGGCTAAAACTTT
194 AC-TTTTTGGTTAAAGCAGATTATAATTGAATGTTTACCTCGG-GAAACGTGAGGCTAAAACACT
* * * * *
10256235 TCATTGAA-AGGAAAAGTCCATTTATAGTCAATCATGCCTTCAACAGACTTATTACTCACTTAAA
257 TCGTTGAATA-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAA
* ** * * *
10256299 ATGGTTTTATAATCA-AATAATTGATTTTAAGTTGATTTTTTTTAAATTTTTGGTTAAAGCATA-
321 ATGGTTTTAGAAT-ATCTTAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-AAG-AAAG
* * * * *
10256362 A-TATAATTGAATGTTTACCTC-AGGAAATGTGAGGCTAAAAC-ATTCCG-TTAA-TAGGAAAAG
383 ACTATAATTGAATGTTTACCTCGA-GAAACGTGAAGCGAAAGCTA-T-AGATTAACTA-GAAAAG
* * * *
10256422 TCCATTTATAGTCACTCATGTCTTTAGAAGCCTTATTAGTCGCTTAAAATAGTTTTATAATCTTA
444 TCCATTTATAGTCACTCATG-CCTTCGAAGCCTTATTACTCGCTTAAAAT-GGTTTATAATCTTA
*
10256487 TA
507 TT
* * * *
10256489 ATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAGAAAGGTTATAATTGAATGTTTACCTT
1 ATTGATTTTAAGTTGAATTTTTTTAC-ATTTTTGTTAA-ACAGATTATAATTGAATGTTTACCTA
* * * * *
10256554 GAGAAACGTGAAGC-AAAA-TCTATAGATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTT
64 GAGAAACGTGAGGCTAAAACCCT-T-CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
** * * * * * * **
10256617 TGAAAGCCTTATTACTCGCTTTATATGG-TTTGTAATTTGATTATTGATTTTAAGTTGTGTTTTT
127 CAAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTT
* * * * * * * *
10256681 TTATATTTTTTGTTAAAACAGATTGTAATTGGATGATTACCTCGGGAAACGTGAGACTAAAAGAC
192 TTA-CTTTTTGGTTAAAGCAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAAACAC
* * * * *
10256746 TCCGTTGACA-AGAAAAGTCCATGTATAGTCACTCATACCTTCAAAAGCCTTATAACTCACTTAA
256 TTCGTTGA-ATAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAA
* * * * * * * * *
10256810 AATGGCTTTATAATCTCATAATTAATTTAAAGTTAAATTTTCTTACATTTTTGGTTAAGAAAGGC
320 AATGGTTTTAGAATATCTTAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGAC
* * *
10256875 TATAATTGAAT-TTTACCTCAAGAAACGTGAAGCAAAAGCTATAGATTGACTAGAAAAGTCCATT
385 TATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTATAGATTAACTAGAAAAGTCCATT
* * * *
10256939 TATAGTCTCTTATGCCTTCGAAAGCCTTACTACTCGCTTTAAATGGTTTTATAATCTTATT
450 TATAGTCACTCATGCCTTCG-AAGCCTTATTACTCGCTTAAAATGG-TTTATAATCTTATT
* * ** * *
10257000 ATTGACTTTAGGTTGAATTTTCGTGCATTTTTAGTTAAAACATATTATAATTGAATGTTTACC-A
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTT-AAACAGATTATAATTGAATGTTTACCTA
* * * * * * *
10257064 TGAGAAACCTGAGGCTAAAACCCTTAACTGAAAAAAAAAAGTCTATTTATAGTCAATCATGCCTT
64 -GAGAAACGTGAGGCTAAAACCCTTCATTG-ACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * *
10257129 CAGCAA-TCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT
127 CA-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT
* * * * * * *
10257193 TTTACATTTTCGGTTAAAGCAGATTATAATTGAATGTTTACCTCAGAAAATGTCAAGCTAAAACC
191 TTTAC-TTTTTGGTTAAAGCAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAAACA
* *
10257258 CTCCGTT-AATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAGTCGCTTA
255 CTTCGTTGAATA-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
* * *
10257322 AAATAGG-TTTAGAATATCTTAATTAATTTTAAGTTGAATTTTTTTACAATTTTGGGTAAGAAAG
319 AAAT-GGTTTTAGAATATCTTAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAG
* * *
10257386 ACTATAATTGAATGTTTACCTAGAGAAACCTGAAGCGAAAGCTATAGACTAACTAGAAAAGTCCA
383 ACTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTATAGATTAACTAGAAAAGTCCA
* ** * * * * *
10257451 CTTATAGTCAGACATTCCTTCAGAAGGCTTATTACTCACTTAAAATGGCTTGTAAT-TTGATT
448 TTTATAGTCACTCATGCCTTC-GAAGCCTTATTACTCGCTTAAAATGGTTTATAATCTT-ATT
* * *
10257513 ATTGATTTTAAGTTGAATTTTTTTATATTTTTTGTTCAAACAGATTGTAATTGAATGTTGACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGTT-AAACAGATTATAATTGAATGTTTACCT-
* * * * * *
10257578 AG-GAAACGTGAGGCTAAAACACTCCGTTGATAAGAAAAGTCCATGTATTGTCACTCATGCCTTC
63 AGAGAAACGTGAGGCTAAAACCCTTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * * * *
10257642 AAAAGCCTTATAACTCACTGAAAATGGCTTTATAATCTCGTAATTAATTTTAAATTAAATTTTTT
128 AAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * **
10257707 TACATTTTTGGTT-AAGAAAGGTTATAGTTGAATGTTTACCTCGAGAAACGTGAAGC-GAAA-GT
193 TAC-TTTTTGGTTAAAG-CAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAAACAC
* * * * * * * *
10257769 TATAGATTAAATAGAAAAGTCCATTTATAGTCACTAATG-TTGTTAAATGCTTTATTACTCACTT
256 T-TCG-TTGAATAGAAAAGTCCATTTATAGTCACTCATGCCT-TCAAAAGCCTTATTACTCGCTT
* *
10257833 AAAATGGTTTTATAATCTCATT-ATTGATTTTAAGTT
318 AAAATGGTTTTAGAATATC-TTAATTGATTTTAAGTT
10257869 AAGNNNNNNN
Statistics
Matches: 2774, Mismatches: 530, Indels: 245
0.78 0.15 0.07
Matches are distributed among these distances:
509 4 0.00
510 152 0.05
511 702 0.25
512 1419 0.51
513 402 0.14
514 92 0.03
515 3 0.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (508 bp):
ATTGATTTTAAGTTGAATTTTTTTACATTTTTGTTAAACAGATTATAATTGAATGTTTACCTAGA
GAAACGTGAGGCTAAAACCCTTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAA
AGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
TTTTTGGTTAAAGCAGATTATAATTGAATGTTTACCTCGGGAAACGTGAGGCTAAAACACTTCGT
TGAATAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGT
TTTAGAATATCTTAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGACTATAAT
TGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCTATAGATTAACTAGAAAAGTCCATTTATAGT
CACTCATGCCTTCGAAGCCTTATTACTCGCTTAAAATGGTTTATAATCTTATT
Found at i:10257865 original size:171 final size:169
Alignment explanation
Indices: 10253931--10257868 Score: 3143
Period size: 171 Copynumber: 23.1 Consensus size: 169
10253921 NNNNNNCATA
* * *
10253931 ATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAGAAAGGTTATAATTGAATGTTTACCTT
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * * * *
10253996 GAGAAACGTGAAGCGAAATCCATCGATTGACA-AGAAAAGTCTATTTATAATCACTCATGCCATT
65 GAGAAACGTGAAGCAAAAGCTATCGATT-AAATAGAAAAGTCCATTTATAGTCACTCATGCC-TT
* * * * *
10254060 GAAAGCCTTATTACTCACTTTAAATGG-TTTGTAATTTGATT
128 CAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * * *
10254101 ATTAATTTTGAGTTGAGTTTTTTTATATTTTTTGTTAAAACAGATTGTAATTGAATGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAA-AGATTATAATTGAATGTTTACCTC
* * * * * *
10254166 GGGAAA-GATG-AGACTAAAAAACT-CCG-TTGACA-AGAAAAGTCCATGTATAGTCACTCATAC
65 GAGAAACG-TGAAG-C--AAAAGCTATCGATT-AAATAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
10254226 CTTCAAAAGGCTTATAACTCACTTAAAATGGCTTTATAATCTCATA
125 CTTC-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * ** *
10254272 ATTAATTTGAAGTTGAAATTTTTTACATTTTTGGTTAAGAAAGGCTATAATTGAAT-TTTATCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * * * *
10254336 GAGAAACGTGAAGCGAAAGCTATAGATTGACTTGAAAAGTCCATTTATAGTCTCTCATGCCTTCG
65 GAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTC-
** ** * *
10254401 AAAGCCTTGCTACTTGCTTTAAATGGTTTTATAATCTTATT
129 AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * **
10254442 ATTGACTTTT--GTTTGAATTCTTTTGCATTTTTGGTTAAAACAGATTATAATTGAATCTTTGGC
1 ATTGA-TTTTAAG-TTGAATTTTTTTACATTTTTGGTTAAAA-AGATTATAATTGAATGTTTACC
* * * * * * *
10254505 TAGAGAAACGCGAGGCTAAAACCCT-TC-ACTGAAA-GGAAAAGTCCATTTATAGTCAATCATGC
63 TCGAGAAACGTGAAGC-AAAA-GCTATCGA-TTAAATAGAAAAGTCCATTTATAGTCACTCATGC
* *
10254567 CATCAAAAGTCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
125 CTTC-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * *
10254613 ATTGATTTTAACTTGAATTTTATTAC-TTTTTCGGTTAAAGCAGATTATAATTGAATGTTTACTT
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTT-GGTTAAA-AAGATTATAATTGAATGTTTACCT
* * ** * * *
10254677 CGGGAAATGTGGGGCTAAAACCCT-TCG-TT-AATAGAAAAAGTTCATTTGTAGTCACTCATGCC
64 CGAGAAACGTGAAGC-AAAA-GCTATCGATTAAATAG-AAAAGTCCATTTATAGTCACTCATGCC
* * * * *
10254739 TTCAGAAGCCTTATTAGTCGCTTAAAATAGTTTTAGAATATC-TT
126 TTCA-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * *
10254783 AATTGATTTTAAGTTGAATTTTTTTACAATTTTGGCTAAGAAAGGTTATAATTTCAA-GTTTACC
1 -ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAA-TTGAATGTTTACC
* * * * * *
10254847 TTGAGAAACGTGAAGCGAAGGCTCTTGATTAACTAGAAAAGTCCATTTATAGTCACAT-ATGCCT
63 TCGAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCAC-TCATGCCT
* *** * * *
10254911 TCGTAAGCCTTATTACTTGTTTAAAATGG-TTTGTACTCTGATT
127 TC-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * ** *
10254954 ATTTATTTAAAGTTGAATTTTTTTAAATTTGTT-GTTCAAACTGATTGTAATTGAATGTTTACCT
1 ATTGATTTTAAGTTGAATTTTTTTACATTT-TTGGTT-AAAAAGATTATAATTGAATGTTTACCT
* * * * * *
10255018 TGGGAAACGTGAGGCTAAAA-C-ACTCCG-TTGACA-AGAAAAGTCCATGTATAGTTA-TGCATG
64 CGAGAAACGTGAAGC-AAAAGCTA-T-CGATT-AAATAGAAAAGTCCATTTATAGTCACT-CATG
* * * *
10255078 CCTTTAAAAGCCTTATAACTCACTTAAAATGGCTTTATAATCTCATA
124 CC-TTCAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* *
10255125 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAGAAAGGTTATAATTGAATGTTTACCTA
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * ** * *
10255190 GAGAAAAGTGAAGCAAAAACTATAGATTGGATAGAAAAGTGCATTTATAGTCACTTATGCCTTCG
65 GAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTC-
* * * * *
10255255 AAAGCCTTACTCCTCGCTTTAAATGGTTTTATAATCTTATT
129 AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * * * * **
10255296 ATTGACTTTAGGTTGAATTCTCTTGCATTTTTAGTTAAAACAGATTATAATTGAATCTTTGGCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAA-AGATTATAATTGAATGTTTACCTC
* * * * * * *
10255361 GAGAAACGCGAGGCTAAAACCCT-TC-ACTGAAA-GGAAAAGTCTATTTATAGTCAATCATGCCA
65 GAGAAACGTGAAGC-AAAA-GCTATCGA-TTAAATAGAAAAGTCCATTTATAGTCACTCATGCC-
* *
10255423 TTGAAA-CTCTTATTACTCACTTAAAATGG-TTTATAATGTCATT
126 TTCAAAGC-CTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * *
10255466 ATTGATTTTAAGTTAAATTTTCTTACATTTTCGGTTAAAGCAGATTATAATTGAAAGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAA-AAGATTATAATTGAATGTTTACCTC
* * * **
10255531 GAGAAATGTGAGGTTAAAA-CCCTCTG-TT-AATAGGAAAAGTCCATTTATAGTCACTCATGCCT
65 GAGAAACGTGAAG-CAAAAGCTATC-GATTAAATA-GAAAAGTCCATTTATAGTCACTCATGCCT
* * * * *
10255593 TCAGAAGCCTTATTAGTCGCTTAAAATAGTTTTAGAATATC-TT
127 TCA-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * * *
10255636 AATTGATTTTAAGTTGAATTTTTTTATAATTTTGGCTAAGAAAGGTTATAATTAAATGTTTCCCT
1 -ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCT
* * * * * * * *
10255701 TGAGAAACGTGAAGCAAAGGCTATTGATTAACTAGAAAAGTTCACTTATAGTCACACATACCTTC
64 CGAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
10255766 GGAAGCCTTATTACTCGCTTAAAATGG-TTTGTAATCTGATT
129 -AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * ** * *
10255807 ATTGATTTTAAGTTGAATTTATTTATATTTTTTATTCAAACAGATTGTAATTGAATGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-AAAAAGATTATAATTGAATGTTTACCTC
* * * * *
10255872 GAGAAACGTGAGGCTAAAA-C-ACTCCG-TTGACAA-A-ACAAGTCCATGTATAGTTACTCATGG
65 GAGAAACGTGAAGC-AAAAGCTA-T-CGATT-A-AATAGAAAAGTCCATTTATAGTCACTCATGC
* * *
10255932 CTTCAAAAGCCTTATAACTCACTTAAAATGGCTTTATAATCTCATA
125 CTTC-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * *
10255978 ATTGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAGAAAGGTTATAATTGAATGTTTACTTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * *
10256043 GAGAAACGTGAAGCGAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCACT-ATGCCTTCG
65 GAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTC-
* * * * *
10256107 AAAGCCTTACTACTCGCTTTAAATAGTTTTAT-ATCTTATT
129 AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * * * ** * ** *
10256147 ATTGACTTTAGGTTCAATTCTCTTGCATTTTTTATTAAAACATATTATAATTGAATGTTTGTCTG
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAA-AGATTATAATTGAATGTTTACCTC
* * * *
10256212 GAGAAACGTGAGGCTAAAA-CTTTTC-ATTGAAA-GGAAAAGTCCATTTATAGTCAATCATGCCT
65 GAGAAACGTGAAGC-AAAAGC-TATCGATT-AAATAGAAAAGTCCATTTATAGTCACTCATGCCT
* ** *
10256274 TCAACAGACTTATTACTCACTTAAAATGGTTTTATAATCAAATA
127 TCAA-AGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * *
10256318 ATTGATTTTAAGTTGATTTTTTTTAAATTTTTGGTTAAAGCATAATATAATTGAATGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAA-AAGATTATAATTGAATGTTTACCTC
* * *
10256383 -AGGAAATGTGAGGCTAAAA-C-ATTCCG-TT-AATAGGAAAAGTCCATTTATAGTCACTCATGT
65 GA-GAAACGTGAAGC-AAAAGCTA-T-CGATTAAATA-GAAAAGTCCATTTATAGTCACTCATGC
* * * * * *
10256443 CTTTAGAAGCCTTATTAGTCGCTTAAAATAGTTTTATAATCTTATA
125 CTTCA-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * *
10256489 ATTGATTTTAAGTTGAATTTTTTTACAATTTTGGTTAAGAAAGGTTATAATTGAATGTTTACCTT
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * *
10256554 GAGAAACGTGAAGCAAAATCTATAGATT-GATAAGAAAAGTCTATTTATAGTCACTCATGCCTTT
65 GAGAAACGTGAAGCAAAAGCTATCGATTAAAT-AGAAAAGTCCATTTATAGTCACTCATGCC-TT
* * * * * * *
10256618 GAAAGCCTTATTACTCGCTTTATATGG-TTTGTAATTTGATT
128 CAAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
** * * * * *
10256659 ATTGATTTTAAGTTGTGTTTTTTTATATTTTTTGTTAAAACAGATTGTAATTGGATGATTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAA-AGATTATAATTGAATGTTTACCTC
* * * * *
10256724 GGGAAACGTG-AGACTAAAAGACT-CCG-TTGACA-AGAAAAGTCCATGTATAGTCACTCATACC
65 GAGAAACGTGAAG-C-AAAAG-CTATCGATT-AAATAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
10256785 TTCAAAAGCCTTATAACTCACTTAAAATGGCTTTATAATCTCATA
126 TTC-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * **
10256830 ATTAATTTAAAGTTAAATTTTCTTACATTTTTGGTTAAGAAAGGCTATAATTGAAT-TTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * * * *
10256894 AAGAAACGTGAAGCAAAAGCTATAGATTGACTAGAAAAGTCCATTTATAGTCTCTTATGCCTTCG
65 GAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTC-
* * * *
10256959 AAAGCCTTACTACTCGCTTTAAATGGTTTTATAATCTTATT
129 AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * ** * * *
10257000 ATTGACTTTAGGTTGAATTTTCGTGCATTTTTAGTTAAAACATATTATAATTGAATGTTTACCAT
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAA-AGATTATAATTGAATGTTTACC-T
* * * * * * *
10257065 -GAGAAACCTGAGGCTAAAACCCTTAACTGA--AAA-AAAAAAGTCTATTTATAGTCAATCATGC
64 CGAGAAACGTGAAGC-AAAA-GC-TATC-GATTAAATAGAAAAGTCCATTTATAGTCACTCATGC
* *
10257126 CTTCAGCAA-TCTTATTACTCACTTAAAATGGTTTTATAATCTCATA
125 CTTCA--AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* *
10257172 ATTGATTTTAAGTTGAATTTTTTTACATTTTCGGTTAAAGCAGATTATAATTGAATGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAA-AAGATTATAATTGAATGTTTACCTC
* * * *
10257237 -AGAAAATGTCAAGCTAAAACCCT-CCG-TT-AATAGGAAAAGTCCATTTATAGTCACTCATGCC
65 GAG-AAACGTGAAGC-AAAA-GCTATCGATTAAATA-GAAAAGTCCATTTATAGTCACTCATGCC
* * * *
10257298 TTCAAAAGCCTTATTAGTCGCTTAAAATAGG-TTTAGAATATC-TT
126 TTC-AAAGCCTTATTACTCACTTAAAAT-GGTTTTATAATCTCATT
* * * *
10257342 AATTAATTTTAAGTTGAATTTTTTTACAATTTTGGGTAAGAAAGACTATAATTGAATGTTTACCT
1 -ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCT
* * * * * * * ** *
10257407 AGAGAAACCTGAAGCGAAAGCTATAGACTAACTAGAAAAGTCCACTTATAGTCAGACATTCCTTC
64 CGAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
10257472 AGAAGGCTTATTACTCACTTAAAATGG-CTTGTAATTTGATT
129 A-AAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * *
10257513 ATTGATTTTAAGTTGAATTTTTTTATATTTTTTGTTCAAACAGATTGTAATTGAATGTTGACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-AAAAAGATTATAATTGAATGTTTACCTC
* * * *
10257578 -AGGAAACGTGAGGCTAAAA-C-ACTCCG-TT-GATAAGAAAAGTCCATGTATTGTCACTCATGC
65 GA-GAAACGTGAAGC-AAAAGCTA-T-CGATTAAAT-AGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
10257638 CTTCAAAAGCCTTATAACTCACTGAAAATGGCTTTATAATCTCGTA
125 CTTC-AAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
* * * * *
10257684 ATTAATTTTAAATTAAATTTTTTTACATTTTTGGTTAAGAAAGGTTATAGTTGAATGTTTACCTC
1 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AAAGATTATAATTGAATGTTTACCTC
* * * * * *
10257749 GAGAAACGTGAAGCGAAAGTTATAGATTAAATAGAAAAGTCCATTTATAGTCACTAATG-TTGTT
65 GAGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCT-TC
*
10257813 AAATGCTTTATTACTCACTTAAAATGGTTTTATAATCTCATT
129 AAA-GCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
10257855 ATTGATTTTAAGTT
1 ATTGATTTTAAGTT
10257869 AAGNNNNNNN
Statistics
Matches: 2970, Mismatches: 627, Indels: 341
0.75 0.16 0.09
Matches are distributed among these distances:
168 13 0.00
169 145 0.05
170 1097 0.37
171 1503 0.51
172 200 0.07
173 8 0.00
174 2 0.00
175 2 0.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (169 bp):
ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAAAGATTATAATTGAATGTTTACCTCG
AGAAACGTGAAGCAAAAGCTATCGATTAAATAGAAAAGTCCATTTATAGTCACTCATGCCTTCAA
AGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATT
Found at i:10258284 original size:171 final size:171
Alignment explanation
Indices: 10257972--10258292 Score: 412
Period size: 171 Copynumber: 1.9 Consensus size: 171
10257962 NNNNNNNNNN
* * *
10257972 TAAATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGT
1 TAAATGTTTGCCTTGAGAAACGTGAAGCAAAAGCCATCAATTGACAAGAAAAGTCTATATATAGT
* * * * **
10258037 CACTCATGCCTTCAAAAGGCTTAATACTCGTTTTAAATGGTTTTATAATCTCATTATTGGTTTTA
66 CACTCATGCCTTCAAAAGCCTTAATACTCGTGTTAAATGGTTTTATAATCTCATAACTAATTTTA
* *
10258102 TGTTGAATTTTTTTGCATTTCTTGTTAAAACAGAGTGTAAT
131 AGTTGAATTTTTTTACATTTCTTGTTAAAACAGAGTGTAAT
* * * *
10258143 TAAATGTTTGCCTTGGGAAACTTGAGGCAAAAGCCATCAATTGACAAG-AAAGTTTCATATATAG
1 TAAATGTTTGCCTTGAGAAACGTGAAGCAAAAGCCATCAATTGACAAGAAAAGTCT-ATATATAG
* ** * * *
10258207 TCGCTCATGCCTTCGAGTA-CCTTATTACTTGTGTTAAATTGTTTTATAATCTCATAACTAATTT
65 TCACTCATGCCTTC-AAAAGCCTTAATACTCGTGTTAAATGGTTTTATAATCTCATAACTAATTT
*
10258271 TAAGTTTAATTTTTTTACATTT
129 TAAGTTGAATTTTTTTACATTT
10258293 TTCATAAAAC
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
170 6 0.05
171 118 0.94
172 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (171 bp):
TAAATGTTTGCCTTGAGAAACGTGAAGCAAAAGCCATCAATTGACAAGAAAAGTCTATATATAGT
CACTCATGCCTTCAAAAGCCTTAATACTCGTGTTAAATGGTTTTATAATCTCATAACTAATTTTA
AGTTGAATTTTTTTACATTTCTTGTTAAAACAGAGTGTAAT
Found at i:10260046 original size:60 final size:59
Alignment explanation
Indices: 10259942--10260092 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 59
10259932 CAGCAAAAAG
* ** **
10259942 GAATCTTGCTGCAGCGAAAAACTCTCTGTTTCATCAGCTAAATTTCGTTGCAGTTCGAAA
1 GAATCTTGCTGCAGCGAAAACCT-TCTGTTTCATCAGCTAAATTTCACTGCAGCGCGAAA
* ** * *
10260002 GAATTTTGCTGCAGCGAGAAACCTTCTGTTTC-TGGGTTACAATTTCACTGCAGCGGGAAA
1 GAATCTTGCTGCAGCGA-AAACCTTCTGTTTCATCAGCTA-AATTTCACTGCAGCGCGAAA
*
10260062 GAATCTCGCTGCAGCGAAAAACCTTCTGTTT
1 GAATCTTGCTGCAGCG-AAAACCTTCTGTTT
10260093 TGGTCTCTTA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
59 4 0.05
60 66 0.87
61 6 0.08
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (59 bp):
GAATCTTGCTGCAGCGAAAACCTTCTGTTTCATCAGCTAAATTTCACTGCAGCGCGAAA
Found at i:10261260 original size:170 final size:170
Alignment explanation
Indices: 10260976--10261872 Score: 947
Period size: 171 Copynumber: 5.3 Consensus size: 170
10260966 TTGAGAAATA
*
10260976 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCTTTTGAAAGCCT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGT-CATTTATAGTCACTC-ATGCCTTTGAAAGCCT
*
10261040 TATTAGTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
64 TATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* *
10261105 CGATTAAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACG
129 TGATTAAGAAAGGTTATAAATAAATGTTTGCCTCGAGAAACG
* * * * * *
10261147 CGAAGCAAAAGCCATCCATTGACAAGAAAGGTCTTTTTTAGTCACTCATGCCTTTGATAGCTTTA
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCATTTATAGTCACTCATGCCTTTGAAAGCCTTA
* * *
10261212 TTACTTGCTTTAAACGGTTTTAAAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTTT
* * *
10261277 G-TTTAGAAAGGTTAGAAATAAATATTTGCCTCGAGAAACG
130 GATTAAGAAAGGTTATAAATAAATGTTTGCCTCGAGAAACG
** * * * **
10261317 TGAAGTGAAAGACATCTATTGACAAGAAAAGTCTATTTATAGTCACTCATGACTTCAAAAGCCTT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTTGAAAGCCTT
* * *
10261382 ATTACTCGCTTTAAATGGTTTTATGATC-CAATTATTGGTTTTATGTTGAATTTTTTTACATTTT
65 ATTACTCGCTTTAAATGGTTTTATAATCTC-ATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * * *
10261446 TGGTTAA-AACAGATTGTAATTAAATGTTTGCCTTTG-GAAACT
129 TGATTAAGAA-AGGTTATAAATAAATGTTTGCC-TCGAGAAACG
* ** * * * *
10261488 TGAAGCAAAAGCCATCAATTGACAAG---TTTCATATATAGTC-GTCCATGCCTTCGAATGCCTT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCATTTATAGTCACT-CATGCCTTTGAAAGCCTT
* * * * * * * * *
10261549 ATTACTTG-TGTTAAATTGTTTTATAATCCCATTACTGTTTTTAAGATGAATTGTTTTACCTTCT
65 ATTACTCGCT-TTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * ** * * * *
10261613 TCA-TAAAAATATATTATAATTGAATGTTTACC-CTGAAAAACG
129 TGATTAAGAA-AGGTTATAAATAAATGTTTGCCTC-GAGAAACG
*
10261655 TGAAGCAAAAGCCATCCATTGACAGGAAAAGTCCATTTATAGTCAC-CTATGCCTTTGAAAGCCT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGT-CATTTATAGTCACTC-ATGCCTTTGAAAGCCT
* * * *
10261719 TATTACTCGCTTTAAATGGTTCTGTAAGCTCATTAGTGATTTTAAGTTGAATTTTTTTTACATTT
64 TATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTTACATTT
* ** * *
10261784 TTGGTTGGGAAAGGTTAGAAATAAATGTTTGCCTCGAGATACG
128 TTGATTAAGAAAGGTTATAAATAAATGTTTGCCTCGAGAAACG
* * *
10261827 TGAAGCGAAAGCCATTCATTGCCAAGAAAAGTCCATTTATAGTCAC
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGT-CATTTATAGTCAC
10261873 CTATGNNNNN
Statistics
Matches: 592, Mismatches: 111, Indels: 45
0.79 0.15 0.06
Matches are distributed among these distances:
166 6 0.01
167 123 0.21
168 3 0.01
170 154 0.26
171 223 0.38
172 79 0.13
173 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (170 bp):
TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCATTTATAGTCACTCATGCCTTTGAAAGCCTTA
TTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTG
ATTAAGAAAGGTTATAAATAAATGTTTGCCTCGAGAAACG
Found at i:10261728 original size:338 final size:338
Alignment explanation
Indices: 10260976--10261841 Score: 942
Period size: 338 Copynumber: 2.5 Consensus size: 338
10260966 TTGAGAAATA
*
10260976 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACCTATGCTTTTGAAAGCCTT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACCTATGCCTTTGAAAGCCTT
* * *
10261041 ATTAGTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTC
66 ATTACTCGCTTTAAATGGTTTTATGATC-CATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * *
10261106 GATTAAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACGCGAAGCAAAAGCCATCCATTGACA
130 GGTTAAGAAAGATTATAAATAAATGTTTACCTCGAGAAACGCGAAGCAAAAGCCATCAATTGACA
* * * * *
10261171 AGAAAGGTCTTTTTTAGTCACTCATGCCTTTGATAGCTTTATTACTTGCTTTAAACGGTTTTAAA
195 AG--AGGTCATATATAGTCACTCATGCCTTCGATAGCCTTATTACTTGCTTTAAACGGTTTTAAA
* * * * * * ** * * *
10261236 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTTAGAAAGGTTAGAAATAAATA
258 ATCCCATTACTGATTTTAAGATGAATTGTTTTACACTTCTTCATAAAAAAGATTAGAAATAAATA
* *
10261301 TTTGCCTCGAGAAACG
323 TTTCCCTCGAAAAACG
** * * * * **
10261317 TGAAGTGAAAGACATCTATTGACAAGAAAAGTCTATTTATAGTCA-CTCATGACTTCAAAAGCCT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACCT-ATGCCTTTGAAAGCCT
* *
10261381 TATTACTCGCTTTAAATGGTTTTATGATCCAATTATTGGTTTTATGTTGAATTTTTTTACATTTT
65 TATTACTCGCTTTAAATGGTTTTATGATCC-ATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * **
10261446 TGGTTAA-AACAGATTGTAATTAAATGTTTGCCTTTG-GAAACTTGAAGCAAAAGCCATCAATTG
129 TGGTTAAGAA-AGATTATAAATAAATGTTTACC-TCGAGAAACGCGAAGCAAAAGCCATCAATTG
** * **
10261509 ACAAG-TTTCATATATAGTC-GTCCATGCCTTCGA-ATGCCTTATTACTTG-TGTTAAATTGTTT
192 ACAAGAGGTCATATATAGTCACT-CATGCCTTCGATA-GCCTTATTACTTGCT-TTAAACGGTTT
* * * * *
10261570 TATAATCCCATTACTGTTTTTAAGATGAATTGTTTTAC-CTTCTTCATAAAAATATATTATAATT
254 TAAAATCCCATTACTGATTTTAAGATGAATTGTTTTACACTTCTTCATAAAAA-AGATTAGAAAT
* *
10261634 GAATGTTTACCCT-GAAAAACG
318 AAATATTT-CCCTCGAAAAACG
*
10261655 TGAAGCAAAAGCCATCCATTGACAGGAAAAGTCCATTTATAGTCACCTATGCCTTTGAAAGCCTT
1 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACCTATGCCTTTGAAAGCCTT
* * *
10261720 ATTACTCGCTTTAAATGGTTCTGTAAGCT-CATTAGTGATTTTAAGTTGAATTTTTTTTACATTT
66 ATTACTCGCTTTAAATGGTT-T-TATGATCCATTATTGATTTTAAGTTGAA-TTTTTTTACATTT
** * * * * * *
10261784 TTGGTTGGGAAAGGTTAGAAATAAATGTTTGCCTCGAGATACGTGAAGCGAAAGCCAT
128 TTGGTTAAGAAAGATTATAAATAAATGTTTACCTCGAGAAACGCGAAGCAAAAGCCAT
10261842 TCATTGCCAA
Statistics
Matches: 433, Mismatches: 77, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
337 11 0.03
338 184 0.42
339 62 0.14
340 11 0.03
341 163 0.38
342 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (338 bp):
TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACCTATGCCTTTGAAAGCCTT
ATTACTCGCTTTAAATGGTTTTATGATCCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTG
GTTAAGAAAGATTATAAATAAATGTTTACCTCGAGAAACGCGAAGCAAAAGCCATCAATTGACAA
GAGGTCATATATAGTCACTCATGCCTTCGATAGCCTTATTACTTGCTTTAAACGGTTTTAAAATC
CCATTACTGATTTTAAGATGAATTGTTTTACACTTCTTCATAAAAAAGATTAGAAATAAATATTT
CCCTCGAAAAACG
Found at i:10262132 original size:14 final size:14
Alignment explanation
Indices: 10262113--10262144 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10262103 GGTTGCAAAA
10262113 AAATTTTCCAATGG
1 AAATTTTCCAATGG
*
10262127 AAATTTTCCATTGG
1 AAATTTTCCAATGG
10262141 AAAT
1 AAAT
10262145 CTGTCGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (14 bp):
AAATTTTCCAATGG
Found at i:10265271 original size:14 final size:15
Alignment explanation
Indices: 10265252--10265280 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10265242 TTTTTGACAG
10265252 ATTTCCAAC-GAAAA
1 ATTTCCAACGGAAAA
10265266 ATTTCCAACGGAAAA
1 ATTTCCAACGGAAAA
10265281 GGGTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21
Consensus pattern (15 bp):
ATTTCCAACGGAAAA
Found at i:10277887 original size:171 final size:170
Alignment explanation
Indices: 10277553--10281307 Score: 3399
Period size: 171 Copynumber: 22.0 Consensus size: 170
10277543 NNNNNNNNNN
* * *
10277553 TCAATAATAAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCAAAGACATGAGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
** * * * * * *
10277618 AAATAAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGCAAACATTTATTTTT
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTTC
* * *
10277683 AAGCTTCCTTAATCGAAAACA--TAAAAAAATTCAACTTAAAA
131 AATCTT-TTTAA-C-AAAAAATGTAAAAAAATTCAACTTAAAA
* * * *
10277724 TCATTAATGAGATTATAAAACTATTTGAAGCGAGTAATAAGGCTTTCAAAGGCACGAGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * *
10277789 AAATAGACTTTTCCTCTTAATGGATGGCTTTCGCTTCATGTTTCCTGAGGTAAACATTCAATTTC
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTTC
* * * *
10277854 AATCTAATTTAACAAAAAATGTCAAACAATTCAACAT-AAA
131 AATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * *
10277894 TCAATGATGAGATTATAAAACCATTTAAAGCGAGCAATAAAGATTTCGAAGGCATG-GATGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAG-TGACTA
* * * * * ** *
10277958 TAAATGGTCTTTTCTTGTTAATGGGTGGCTTTCACTT-AGAGTTTCCCAAGGTAAACACTCAATT
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-CGTTTCCTGAGGTAAACATTCAATT
* *
10278022 ACAAAT-TTGTTTAATGAAAAAA-GTAAAAAAATTCAACTTAAAA
129 TC-AATCTT-TTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAA
* * * **
10278065 TCAGTAATGAGATTATAAAACAATTTAACA-CAAGTAATAAGGCACTCAAAGGCATGAGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * * * * * * *
10278129 TATATGAAATTTTCTTCTCAATTGATGGCTTTTGCTTCAAGTTTCAC-AAGGCAAACATTTAATT
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CTGAGGTAAACATTCAATT
* * * *
10278193 ACAATCTATTTTAACCAAAAATGTAAGAAAATTCAACATAAAA
129 TCAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * *
10278236 -AAATAATGAGATTATAAAACTACTTAAAGCGAGTAATAAGCCTTTCAAAGGCATGAGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * *
10278300 AAATAGACTTTTCTTGTCAATAGATAGCTTTCGCTTCACGTTT-CTCGAGGAAAACATT-TATTT
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAGGTAAACATTCAATTT
* * * *
10278363 CTAAACTTTCATAACCAAAAATGTAAAAATATTCAACTTAAAA
130 C-AATCTTT-TTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* *
10278406 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAACAATGCTTTCAAAGGCATGAGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * *
10278471 AAATAGACTTTT-TTTTCAATGGATGGCCTTCGCTTTACGTTT-CTCGAGGTAAACATTCAATTA
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAGGTAAACATTCAATT-
* * *
10278534 T-AAGCTATTTTTTA-AAAAAATATAAAAAAAATTCAACTTAAAA
129 TCAA--TCTTTTTAACAAAAAATGT-AAAAAAATTCAACTTAAAA
* *
10278577 TCAGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTAACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * ** *
10278642 AAATGGACTTTTGTTG-CTAATGGATGGCTTTCGCTTCATGTTTCCCAAGGTAAGCATTCAATTT
66 AAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTT
* * *
10278706 CAATCTGTTTTAAC-AAAAATATAAAACACTTCAACTTAAAA
130 CAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * * * * *
10278747 TCAAGAATGAGATTATAAAATCGTTTAAAGCAAGCAATAAAGCTGTCGAAGGCATGAGTG---AT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * *
10278809 AAATGGAGC-TTTCTTATCAATGAAAGGGCTTTCGCTTCACGTTTGAC-GAGGTAAACATT-TAT
66 AAATGGA-CTTTTCTTGTCAATG-GATGGCTTTCGCTTCACGTTT-CCTGAGGTAAACATTCAAT
* * * * *
10278871 TTATAACCTATCTTAATC-AAAAACGTAAAAAAATTAAACTTAAAA
128 TT-CAATCT-TTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAA
10278916 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCAT-AGGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGA-GTGACTA
* * * *
10278980 TAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGTAAACATTCAATTA
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATT-
**
10279045 T-AATCTGTTTT-ATGAAAAATGTAAAAAAATTCAACTTAAAA
129 TCAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * ** ** * ** **
10279086 TCAGTAATGAGATTAGAAAATAATTTAACA-TAACTAATAAGGCACTCAAAGGCATGACCGACTA
1 TCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * * * ** * *
10279150 TATATGAAATTTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGGTAAACATTTAATTA
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTT
* * * *
10279215 CAATCTGTTTTAACTAGAAATGCAAAAAAATTCAACATAAAA
130 CAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * ** *
10279257 CCAATAATGAGATCATAAAACCATTTAAAGCGAGTAATAAGCCTTTTGAAGCCATGAGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * *
10279322 AAATAGACTTTTCTTGTTAATAGATGGCTTTCGCTTCACGTTTCTTGAGGAAAACATT-TATTTC
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTTC
* * * * *
10279386 TAACCTTTCTGAAC-CAAAATGTATAAAAATTCAACTTGAAA
131 -AATCTTT-TTAACAAAAAATGTAAAAAAATTCAACTTAAAA
**
10279427 TCAATAATGAGATTATAAAACCATTTAAAATGAGTAATAAGGCTTTCAAAGGCAT-AGGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGA-GTGACTA
* * * * *
10279491 TAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTC-GCAAGCAAACATTTAA-T
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTG-AGGTAAACATTCAATT
* *
10279554 TCTAATTCGTTTTAA-AGAAAAATGTAGAAAAATTCAACTTAAAA
129 TC-AA-TCTTTTTAACA-AAAAATGTAAAAAAATTCAACTTAAAA
* * * * ** * *
10279598 TCTATAATGAGAATATAAAACCATTTAAAGAGAGTAATAAAGCTTTTGAAGACATGAGTGACTAC
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * *
10279663 AAATAGACTTTTCTTATCAATGAATGGCTTTCACTTCACGATT-CTCAAGGTAAACATTCAATTA
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAGGTAAACATTCAATT-
** * **
10279727 T-AATCTGTTTT-ATGAGAAGCGT-AAAAAATTCAACTTAAAA
129 TCAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * * ** * **
10279767 TCAGTAATGAGATTATGAAACAATTTAACA-CAACTAATAAGGCACTCGAAGGCATGAACGACTA
1 TCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * ** * * * ** * *
10279831 TATATGAAAATTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGGTAAACATTTAATTA
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTT
* * * * *
10279896 CAATCTGTTTTAACAAGAAATGCAAAACAATTTAACATAAAA
130 CAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * ** *
10279938 CCAATAATGAGATCATAAAGCCATTTAAAGCGAGTAATAAGCCTTTTGAAGGCATGAATGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * *
10280003 AAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACGTTTCTTGAGGTAAACATT-TATTTC
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTTC
* * * *
10280067 TAACCTTTCTGAACCAAAAATGTAAAAAAATTCAAGTTAAAA
131 -AATCTTT-TTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * *
10280109 TCAATAATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGTTTTCAAAGGCTTGAGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * *
10280174 AAATCGACTTTTCTTATCAATGGATAGCTTTTGCTTCACGTTT-CTCGAGATAAACATTCAA-TT
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAGGTAAACATTCAATTT
* * **
10280237 CTATGCTATTTTTATGAAAAATGTAAAAAAATTCAACTTAAAA
130 CAAT-CT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * *
10280280 TCAGTAATGAGATTATAGAAA-CATTTAAATCGAGTAATAAGGGTTTCAAAGGCGTGAGTGACTA
1 TCAATAATGAGATTATA-AAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * * *
10280344 TAAATGGAGTTTTCTTCGT-AATGGATGGCTTTCACTTCATGTTT-CTCGAGCTGAATATTCAAT
65 TAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAGGTAAACATTCAAT
* * *
10280407 TTCAATATGTTTTAACGAGAAATGTAAAAAAATTCAACTTAAAA
128 TTCAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * *
10280451 TGAATAATGAGATTATAAAACCGTTTAAAGCAAGTAATAAAG-TTGTCGAAGGCATGAGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT-TCAAAGGCATGAGTGACTA
* * ** * *
10280515 AAAAT-GACCTTTCTTGTCAATGGATGGCTTTCGCTTTGCGTTTCTTGAGGTAAACATT-TATTT
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTT
* * *
10280578 ATAACCTTTCTTAATCGAAAACA--TAAAAAAATTCAACTTAAAA
130 -CAATCTTT-TTAA-C-AAAAAATGTAAAAAAATTCAACTTAAAA
* * * ** * *
10280621 TTAATAATGAGATTATAAAACAATTTAAAGCGAGTAATAAGCCTTTTGAAGGAATGGGTGACTAT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * ** * * *
10280686 AAATGGACTTTTCTCGTTAATGAATGGCTTTCAATTCATGTGTGT-C-AAGGTAAATATTCAATT
66 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGT-T-TCCTGAGGTAAACATTCAATT
** * * ** *
10280749 AT-AATCTCTTTTAATGAAAAATGCAATAAAATAAAATTTAAAA
129 -TCAATCT-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * *
10280792 TCAACAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGG-TTTCGAAGGCATGGGTGGCTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGCTTTCAAAGGCATGAGTGACTA
* * * *
10280856 TAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTTACGTTT-TTCAAGGTAAACATTCAATT
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GAGGTAAACATTCAATT
* *
10280920 AT-AATCTGTTTTAATAAAAAA--TAAGAAAAATTCAACTTCAAA
129 -TCAATCT-TTTTAACAAAAAATGTAA-AAAAATTCAACTTAAAA
* * * * *
10280962 TCAATAATGAGATTATAAAACCATTTAACA-CGATTAATGAGGCATTCGAAGGCATGAGTGATTA
1 TCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* *** * * * * *
10281026 TAAATGGACTTTCCTTGTCAACCAATGGCTTTCGCTTCATGTTTCCCGAGGTGAACATTTAATTA
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTT
* * * *
10281091 CAATCTGTTTCAATC-AAAAATGTAAAACAATTCAACATGAAA
130 CAATCT-TTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAA
* * ** * *
10281133 TCAATAATAAGATTATAAAATCATTTAAA-ATAGGTAATAAGGATTTCAAAGGCATGGGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGA-GTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * **
10281197 TAAATGGACTTTTCTTGTTAATGGATGGCTTTCAC-TCAGAGTTTCCCAAGGTAAACATTCAATT
65 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-CGTTTCCTGAGGTAAACATTCAATT
* * * *
10281261 ACAAACAGTTTTAATGAAAAAA-GTAAAAAAATTCAACTTAAAA
129 TCAATC-TTTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAA
10281304 TCAA
1 TCAA
10281308 NNNNNNNNNN
Statistics
Matches: 2912, Mismatches: 557, Indels: 230
0.79 0.15 0.06
Matches are distributed among these distances:
167 22 0.01
168 41 0.01
169 229 0.08
170 953 0.33
171 1553 0.53
172 109 0.04
173 5 0.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (170 bp):
TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGTAAACATTCAATTTC
AATCTTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
Found at i:10278187 original size:341 final size:342
Alignment explanation
Indices: 10277553--10281307 Score: 3491
Period size: 341 Copynumber: 11.0 Consensus size: 342
10277543 NNNNNNNNNN
* * *
10277553 TCAATAATAAGATTATAAAACCATTTAAAGCGAGTAAT-AAGCCTTTCAAAGACATGAGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
** * * * * * *
10277617 TAAATAAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGCAAACATT-TATTT
66 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
* * *
10277681 TTAAGCT-TCCTTAATCGAAAACA--TAAAAAAATTCAACTTAAAATCATTAATGAGATTATAAA
131 CTAATCTGT--TTAAT-GAAAA-ATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAA
* * * * * * *
10277743 ACTATTTGAAGCGAGTAATAAGGCTTTCAAAGGCACGAGTGACTATAAAT-AGACTTTTCCTCTT
192 ACCATTT-AAACAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTC
* * * *
10277807 AATGGATGGCTTTCGCTTCATGTTTC-CTGAGGTAAACATTCAATTTCAATCTAATTTAACAAAA
255 AATGGATGGCTTTTGCTTCACGTTTCTC-AAGGTAAACATTCAATTTCAATCTATTTTAACAAAA
* * *
10277871 AATGTCAAACAATTCAACAT-AAA
319 AATGTAAAAAAATTCAACTTAAAA
* * *
10277894 TCAATGATGAGATTATAAAACCATTTAAAGCGAGCAATAAAG-ATTTCGAAGGCATG-GATGACT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAG-TGACT
* * * * * * * *
10277957 ATAAATGGTCTTTTCTTGTTAATGGGTGGCTTTCACTT-AGAGTTTCCCAAGGTAAACACTCAAT
65 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCTCGAGGTAAACATTCAAT
* * * *
10278021 TACAAATTTGTTTAATGAAAAAAGTAAAAAAATTCAACTTAAAATCAGTAATGAGATTATAAAAC
129 TACTAATCTGTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
* ** * * *
10278086 AATTTAACACAAGTAATAAGGCACTCAAAGGCATGAGTGACTATATATGAAATTTTCTTCTCAAT
194 CATTTAA-ACAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAAT
* * * * * * *
10278151 TGATGGCTTTTGCTTCAAGTTTCACAAGGCAAACATTTAATTACAATCTATTTTAACCAAAAATG
258 GGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTTCAATCTATTTTAACAAAAAATG
* *
10278216 TAAGAAAATTCAACATAAAA
323 TAAAAAAATTCAACTTAAAA
* * * *
10278236 -AAATAATGAGATTATAAAACTACTTAAAGCGAGTAAT-AAGCCTTTCAAAGGCATGAGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
* * * * * * *
10278299 TAAATAGACTTTTCTTGTCAATAGATAGCTTTCGCTTCACGTTTCTCGAGGAAAACATT-TATTT
66 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
* ** *
10278363 CTAAACT-TTCATAACCAAAAATGTAAAAATATTCAACTTAAAATCAATAATGAGATTATAAAAC
131 CTAATCTGTT--TAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
* * * *
10278427 CATTTAAAGCGAGTAACAATGCTTTCAAAGGCATGAGTGACTATAAAT-AGACTTTT-TTTTCAA
194 CATTTAAA-CAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAA
* * * * * *
10278490 TGGATGGCCTTCGCTTTACGTTTCTCGAGGTAAACATTCAATTAT-AAGCTATTTTTTA-AAAAA
257 TGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATT-TCAATCTA-TTTTAACAAAAA
*
10278553 ATATAAAAAAAATTCAACTTAAAA
320 ATGT-AAAAAAATTCAACTTAAAA
* * * *
10278577 TCAGTAATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGCTTTCAAAGGCATGAGTAACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
* * * *
10278641 TAAATGGACTTTTGTTG-CTAATGGATGGCTTTCGCTTCATGTTTCCCAAGGTAAGCATTCAATT
66 TAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATT
* * * * * * *
10278705 TC-AATCTGTTTTAA-CAAAAATATAAAACACTTCAACTTAAAATCAAGAATGAGATTATAAAAT
130 ACTAATCTG-TTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
* * * * * * *
10278768 CGTTTAAAGCAAGCAATAAAGCTGTCGAAGGCATGAGTG---ATAAATGGAGC-TTTCTTATCAA
194 CATTTAAA-CAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAA
* * * ** * * * * *
10278829 TGAAAGGGCTTTCGCTTCACGTTTGACGAGGTAAACATT-TATTTATAACCTATCTTAATC-AAA
257 TG-GATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTT-CAATCTATTTTAA-CAAAA
* *
10278892 AACGTAAAAAAATTAAACTTAAAA
319 AATGTAAAAAAATTCAACTTAAAA
* *
10278916 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGCTTTCAAAGGCAT-AGGTGACT
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGA-GTGACT
* * *
10278979 ATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGTAAACATTCAATT
65 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATT
* * * **
10279044 A-TAATCTGTTTTATGAAAAATGTAAAAAAATTCAACTTAAAATCAGTAATGAGATTAGAAAATA
130 ACTAATCTGTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACC
* * ** ** * * *
10279108 ATTTAACATAACTAATAAGGCACTCAAAGGCATGACCGACTATATATGAAATTTTCTTGTCAATT
195 ATTTAA-ACAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATG
* * * * * * * *
10279173 GATGGCTTTTGCTTCAAGTTTCCCAAGGTAAACATTTAATTACAATCTGTTTTAACTAGAAATGC
259 GATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTTCAATCTATTTTAACAAAAAATGT
*
10279238 AAAAAAATTCAACATAAAA
324 AAAAAAATTCAACTTAAAA
* * * *
10279257 CCAATAATGAGATCATAAAACCATTTAAAGCGAGTAAT-AAGCCTTTTGAAGCCATGAGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
* * * * * * * *
10279321 TAAATAGACTTTTCTTGTTAATAGATGGCTTTCGCTTCACGTTTCTTGAGGAAAACATT-TATTT
66 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
* ** * *
10279385 CTAACCT-TTCTGAA-CCAAAATGTATAAAAATTCAACTTGAAATCAATAATGAGATTATAAAAC
131 CTAATCTGTT-T-AATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
*
10279448 CATTTAAA-ATGAGTAATAAGGCTTTCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCA
194 CATTTAAACA--AGTAATAAGGCTTTCAAAGGCATGA-GTGACTATAAATGAACTTTTCTTGTCA
* * * *
10279511 ATGGATGGCTTTTGCTTCACGTTTTCGCAA-GCAAACATTTAA-TTCTAAT-TCGTTTTAA-AGA
256 ATGGATGGCTTTTGCTTCACG-TTTCTCAAGGTAAACATTCAATTTC-AATCT-ATTTTAACA-A
*
10279572 AAAATGTAGAAAAATTCAACTTAAAA
317 AAAATGTAAAAAAATTCAACTTAAAA
* * * * *
10279598 TCTATAATGAGAATATAAAACCATTTAAAGAGAGTAATAAAG-CTTTTGAAGACATGAGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
* * * * * * * *
10279662 CAAATAGACTTTTCTTATCAATGAATGGCTTTCACTTCACGATTCTCAAGGTAAACATTCAATTA
66 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
* * ** * * *
10279727 -TAATCTGTTTTATGAGAAGCGT-AAAAAATTCAACTTAAAATCAGTAATGAGATTATGAAACAA
131 CTAATCTGTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCA
* ** * ** * ** *
10279790 TTTAACACAACTAATAAGGCACTCGAAGGCATGAACGACTATATATGAAAATTTCTTGTCAATTG
196 TTTAA-ACAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGG
* * * * * * *
10279855 ATGGCTTTTGCTTCAAGTTTCCCAAGGTAAACATTTAATTACAATCTGTTTTAACAAGAAATGCA
260 ATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTTCAATCTATTTTAACAAAAAATGTA
* * *
10279920 AAACAATTTAACATAAAA
325 AAAAAATTCAACTTAAAA
* * * * *
10279938 CCAATAATGAGATCATAAAGCCATTTAAAGCGAGTAAT-AAGCCTTTTGAAGGCATGAATGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
* * * * * *
10280002 TAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACGTTTCTTGAGGTAAACATT-TATTT
66 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
* ** *
10280066 CTAACCT-TTCTGAACCAAAAATGTAAAAAAATTCAAGTTAAAATCAATAATGAGATTATAAAAC
131 CTAATCTGTT-T-AATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
* * * * *
10280130 TATTTAAAGCGAGTAATAAGGTTTTCAAAGGCTTGAGTGACTATAAATCG-ACTTTTCTTATCAA
194 CATTTAAA-CAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAA
* * * * * **
10280194 TGGATAGCTTTTGCTTCACGTTTCTCGAGATAAACATTCAA-TTCTATGCTATTTTTATGAAAAA
257 TGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTTCAAT-CTATTTTAACAAAAAA
10280258 TGTAAAAAAATTCAACTTAAAA
321 TGTAAAAAAATTCAACTTAAAA
* * ** * *
10280280 TCAGTAATGAGATTATAGAAA-CATTTAAATCGAGTAAT-AAGGGTTTCAAAGGCGTGAGTGACT
1 TCAATAATGAGATTATA-AAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACT
* * * * *
10280343 ATAAATGGAGTTTTCTTCGT-AATGGATGGCTTTCACTTCATGTTTCTCGAGCTGAATATTCAAT
65 ATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAAT
* * * * *
10280407 TTC-AATATGTTTTAACGAGAAATGTAAAAAAATTCAACTTAAAATGAATAATGAGATTATAAAA
129 TACTAATCTG-TTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAA
* * * * *
10280471 CCGTTTAAAGCAAGTAATAAAG-TTGTCGAAGGCATGAGTGACTAAAAATG-ACCTTTCTTGTCA
193 CCATTTAAA-CAAGTAATAAGGCTT-TCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCA
* ** ** * * *
10280534 ATGGATGGCTTTCGCTTTGCGTTTCTTGAGGTAAACATT-TATTTATAACCT-TTCTTAATCGAA
256 ATGGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTT-CAATCTATT-TTAA-C-AA
*
10280597 AACA--TAAAAAAATTCAACTTAAAA
317 AAAATGTAAAAAAATTCAACTTAAAA
* * * * *
10280621 TTAATAATGAGATTATAAAACAATTTAAAGCGAGTAAT-AAGCCTTTTGAAGGAATGGGTGACTA
1 TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
* * * ** * * * *
10280685 TAAATGGACTTTTCTCGTTAATGAATGGCTTTCAATTCATGTGTGTCAAGGTAAATATTCAATTA
66 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
* * * ** * *
10280750 -TAATCTCTTTTAATGAAAAATGCAATAAAATAAAATTTAAAATCAACAATGAGATTATAAAACC
131 CTAATCT-GTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACC
* * * * *
10280814 ATTTAAAGCGAGTAATAAAGG-TTTCGAAGGCATGGGTGGCTATAAATGGACTTTTCTTGTCAAT
195 ATTTAAA-CAAGTAAT-AAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAAT
* * * *
10280878 GGATGG-TTTTCGCTTTACGTTTTTCAAGGTAAACATTCAATTAT-AATCTGTTTTAATAAAAAA
258 GGATGGCTTTT-GCTTCACGTTTCTCAAGGTAAACATTCAATT-TCAATCTATTTTAACAAAAAA
*
10280941 --TAAGAAAAATTCAACTTCAAA
321 TGTAA-AAAAATTCAACTTAAAA
* * * * *
10280962 TCAATAATGAGATTATAAAACCATTTAACA-CGATTAAT-GAGGCATTCGAAGGCATGAGTGATT
1 TCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACT
* *** * * *
10281025 ATAAATGGACTTTCCTTGTCAACCAATGGCTTTCGCTTCATGTTTCCCGAGGTGAACATTTAATT
65 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATT
* * * * * *
10281090 AC-AATCTGTTTCAATCAAAAATGTAAAACAATTCAACATGAAATCAATAATAAGATTATAAAAT
130 ACTAATCTGTTT-AATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
* * * *
10281154 CATTTAAA-ATAGGTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTTGTTAA
194 CATTTAAACA-A-GTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAA
** * * * * *
10281218 TGGATGGCTTTCAC-TCAGAGTTTCCCAAGGTAAACATTCAATTACAAAC-AGTTTTAATGAAAA
257 TGGATGGCTTTTGCTTCA-CGTTTCTCAAGGTAAACATTCAATTTCAATCTA-TTTTAA-CAAAA
10281281 AA-GTAAAAAAATTCAACTTAAAA
319 AATGTAAAAAAATTCAACTTAAAA
10281304 TCAA
1 TCAA
10281308 NNNNNNNNNN
Statistics
Matches: 2801, Mismatches: 504, Indels: 217
0.80 0.14 0.06
Matches are distributed among these distances:
338 15 0.01
339 242 0.09
340 406 0.14
341 1522 0.54
342 582 0.21
343 29 0.01
344 5 0.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (342 bp):
TCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCCTTTCGAAGGCATGAGTGACTA
TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAACATTCAATTA
CTAATCTGTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCA
TTTAAACAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGA
TGGCTTTTGCTTCACGTTTCTCAAGGTAAACATTCAATTTCAATCTATTTTAACAAAAAATGTAA
AAAAATTCAACTTAAAA
Found at i:10278564 original size:512 final size:512
Alignment explanation
Indices: 10277553--10281307 Score: 3683
Period size: 512 Copynumber: 7.3 Consensus size: 512
10277543 NNNNNNNNNN
* * * * *
10277553 TCAATAATAAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCAAAGACATGAGTGACTAT
1 TCAATAATGAGATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * ** * * * **
10277618 AAATAAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGCAAACATTTATTTTT
66 AAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTAC
* * *
10277683 AAGCT-TCCTTAATCGAAAACA--TAAAAAAATTCAACTTAAAATCATTAATGAGATTATAAAAC
131 AATCTAT-TTTAAT-GAAAA-ATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAC
* * * * * *
10277745 TATTTGAAGCGAGTAATAAGGCTTTCAAAGGCACGAGTGACTATAAATAGACTTTTCCTCTTAAT
193 TATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAAT
* * ** *
10277810 GGATGGCTTTCGCTTCATGTTTC-CTGAGGTAAACATTCAATTTC-AATCTAATTTAACAAAAAA
258 GGATGGCTTTCGCTTCACGTTTCTC-GAGGTAAACATT-TATTTCTAATCTGTTTTAACCAAAAA
* * * * * *
10277873 TGTCAAACAATTCAACAT-AAATCAATGATGAGATTATAAAACCATTTAAAGCGAGCAATAAAGA
321 TGT-AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
10277937 TTTCGAAGGCATG-GATGACTATAAATGGTCTTTTCTTGTTAATGGGTGGCTTTCACTT-AGAGT
385 TTTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-CGT
* * * * * * * * *
10278000 TTCCCAAGGTAAACACTCAATTACAAAT-TTGTTTAATGAAAAAAGTAAAAAAATTCAACTTAAA
448 TTCTCGAGGTAAACATTTAATTATAACTCTTTTTTAA-CAAAAATGTAAAAAAATTCAACTTAAA
10278064 A
512 A
* **
10278065 TCAGTAATGAGATTATAAAACAATTTAACA-CAAGTAATAAGGCACTCAAAGGCATGAGTGACTA
1 TCAATAATGAGATTATAAAACAATTTAA-AGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * * * * *
10278129 TATATGAAATTTTCTTCTCAATTGATGGCTTTTGCTTCAAGTTTCACAAGGCAAACATTTAATTA
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTA
** * * *
10278194 CAATCTATTTTAACCAAAAATGTAAGAAAATTCAACATAAAA-AAATAATGAGATTATAAAACTA
130 CAATCTATTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACTA
* * * *
10278258 CTTAAAGCGAGTAATAAGCCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAG
195 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* * * *
10278323 ATAGCTTTCGCTTCACGTTTCTCGAGGAAAACATTTATTTCTAAACT-TTCATAACCAAAAATGT
260 ATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTTATTTCTAATCTGTT-TTAACCAAAAATGT
* *
10278387 AAAAATATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAACAATGCTTT
324 AAAAA-ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * *
10278452 CAAAGGCATGAGTGACTATAAATAGACTTTT-TTTTCAATGGATGGCCTTCGCTTTACGTTTCTC
388 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC
* * *
10278516 GAGGTAAACATTCAATTATAAGCTATTTTTTAA-AAAAATATAAAAAAAATTCAACTTAAAA
453 GAGGTAAACATTTAATTATAA-CTCTTTTTTAACAAAAATGT-AAAAAAATTCAACTTAAAA
* * * *
10278577 TCAGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTAACTAT
1 TCAATAATGAGATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * * *
10278642 AAATGGACTTTTGTT-GCTAATGGATGGCTTTCGCTTCATGTTTCCCAAGGTAAGCATTCAATTT
66 AAATGAACTTTTCTTATC-AATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTA
* * * * * *
10278706 CAATCTGTTTTAA-CAAAAATATAAAACACTTCAACTTAAAATCAAGAATGAGATTATAAAA-TC
130 CAATCTATTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACT-
* * * * * * *
10278769 GTTTAAAGCAAGCAATAAAGCTGTCGAAGGCATGAGTG---ATAAATGGAGC-TTTCTTATCAAT
194 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAGA-CTTTTCTTGTCAAT
* * ** * * * * * *
10278830 GAAAGGGCTTTCGCTTCACGTTTGACGAGGTAAACATTTATTTATAACCTATCTTAATCAAAAAC
258 G-GATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTTATTTCTAATCTGTTTTAACCAAAAAT
*
10278895 GTAAAAAAATTAAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
322 GT-AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * *
10278960 TTCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGTTT
386 TTCGAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT
* * * **
10279024 CTTGAGGTAAACATTCAATTATAA-TCTGTTTTATGAAAAATGTAAAAAAATTCAACTTAAAA
450 CTCGAGGTAAACATTTAATTATAACTCTTTTTTAACAAAAATGTAAAAAAATTCAACTTAAAA
* * * * * ** **
10279086 TCAGTAATGAGATTAGAAAATAATTTAACA-TAACTAATAAGGCACTCAAAGGCATGACCGACTA
1 TCAATAATGAGATTATAAAACAATTTAA-AGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * * * *
10279150 TATATGAAATTTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGGTAAACATTTAATTA
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTA
* * * * * * *
10279215 CAATCTGTTTTAACT-AGAAATGCAAAAAAATTCAACATAAAACCAATAATGAGATCATAAAACC
130 CAATCTATTTTAA-TGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACT
* * * * *
10279279 ATTTAAAGCGAGTAATAAGCCTTTTGAAGCCATGAGTGACTATAAATAGACTTTTCTTGTTAATA
194 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* * * *
10279344 GATGGCTTTCGCTTCACGTTTCTTGAGGAAAACATTTATTTCTAACCT-TTCTGAACC-AAAATG
259 GATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTTATTTCTAATCTGTT-TTAACCAAAAATG
* **
10279407 TATAAAAATTCAACTTGAAATCAATAATGAGATTATAAAACCATTTAAAATGAGTAATAAGGCTT
323 TA-AAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* *
10279472 TCAAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-
387 TCGAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * * * * * * *
10279535 TCGCAAGCAAACATTTAATTCTAATTCGTTTTAAAGAAAAATGTAGAAAAATTCAACTTAAAA
451 TCG-AGGTAAACATTTAATTATAACTCTTTTTTAACAAAAATGTAAAAAAATTCAACTTAAAA
* * * * ** *
10279598 TCTATAATGAGAATATAAAACCATTTAAAG-AGAGTAATAAAGCTTTTGAAGACATGAGTGACTA
1 TCAATAATGAGATTATAAAACAATTTAAAGCA-AGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * *
10279662 CAAAT-AGACTTTTCTTATCAATGAATGGCTTTCACTTCACGATTCTCAAGGTAAACATTCAATT
65 TAAATGA-ACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATT
* * * ** * * *
10279726 ATAATCTGTTTT-ATGAGAAGCGT-AAAAAATTCAACTTAAAATCAGTAATGAGATTATGAAACA
129 ACAATCTATTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACT
* * ** ** * **
10279789 ATTTAACA-CAACTAATAAGGCACTCGAAGGCATGAACGACTATATAT-GAAAATTTCTTGTCAA
194 ATTTAA-AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAA
* * * * * *
10279852 TTGATGGCTTTTGCTTCAAGTTTCCCAAGGTAAACATTTAATTAC-AATCTGTTTTAA-CAAGAA
257 TGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTT-ATTTCTAATCTGTTTTAACCAA-AA
* * * * * * *
10279915 ATGCAAAACAATTTAACATAAAACCAATAATGAGATCATAAAGCCATTTAAAGCGAGTAATAAGC
320 ATGTAAAA-AATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* * * *
10279980 CTTTTGAAGGCATGAATGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACGTT
384 CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
* * * * * *
10280045 TCTTGAGGTAAACATTTATTTCTAAC-CTTTCTGAACCAAAAATGTAAAAAAATTCAAGTTAAAA
449 TCTCGAGGTAAACATTTAATTATAACTCTTTTTTAA-CAAAAATGTAAAAAAATTCAACTTAAAA
* * * *
10280109 TCAATAATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGTTTTCAAAGGCTTGAGTGACTAT
1 TCAATAATGAGATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * *
10280174 AAATCG-ACTTTTCTTATCAATGGATAGCTTTTGCTTCACGTTTCTCGAGATAAACATTCAATT-
66 AAAT-GAACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTA
* * *
10280237 CTATGCTATTTTTATGAAAAATGTAAAAAAATTCAACTTAAAATCAGTAATGAGATTATAGAAAC
130 CAAT-CTATTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA-AAAC
* * * * * *
10280302 -ATTTAAATCGAGTAATAAGGGTTTCAAAGGCGTGAGTGACTATAAATGGAGTTTTCTTCGT-AA
193 TATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT-GTCAA
* * * * * * * * *
10280365 TGGATGGCTTTCACTTCATGTTTCTCGAGCTGAATATTCAATTTC-AATATGTTTTAACGAGAAA
257 TGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT-TATTTCTAATCTGTTTTAACCAAAAA
* * * *
10280429 TGTAAAAAAATTCAACTTAAAATGAATAATGAGATTATAAAACCGTTTAAAGCAAGTAATAAAG-
321 TGT-AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * **
10280493 TTGTCGAAGGCATGAGTGACTAAAAAT-GACCTTTCTTGTCAATGGATGGCTTTCGCTTTGCGTT
385 TT-TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
* * * * **
10280557 TCTTGAGGTAAACATTTATTTATAAC-CTTTCTTAATCGAAAACATAAAAAAATTCAACTTAAAA
449 TCTCGAGGTAAACATTTAATTATAACTCTTTTTTAA-CAAAAATGTAAAAAAATTCAACTTAAAA
* * * ** * *
10280621 TTAATAATGAGATTATAAAACAATTTAAAGCGAGTAATAAGCCTTTTGAAGGAATGGGTGACTAT
1 TCAATAATGAGATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
* ** * * ** * * * * *
10280686 AAATGGACTTTTCTCGTTAATGAATGGCTTTCAATTCATGTGTGTCAAGGTAAATATTCAATTAT
66 AAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTAC
* * * ** * * *
10280751 AATCTCTTTTAATGAAAAATGCAATAAAATAAAATTTAAAATCAACAATGAGATTATAAAACCAT
131 AATCTATTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACTAT
* * *
10280816 TTAAAGCGAGTAATAAAGG-TTTCGAAGGCATGGGTGGCTATAAATGGACTTTTCTTGTCAATGG
196 TTAAAGCGAGTAAT-AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* * * * * * * ** *
10280880 ATGGTTTTCGCTTTACGTTTTTCAAGGTAAACATTCAATTATAATCTGTTTTAATAAAAAAT-AA
260 ATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTTATTTCTAATCTGTTTTAACCAAAAATGTA
* * * *
10280944 GAAAAATTCAACTTCAAATCAATAATGAGATTATAAAACCATTTAACA-CGATTAATGAGGCATT
325 -AAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTT
* * *** * *
10281008 CGAAGGCATGAGTGATTATAAATGGACTTTCCTTGTCAACCAATGGCTTTCGCTTCATGTTTCCC
388 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC
* * * * * * *
10281073 GAGGTGAACATTTAATTACAA-TCTGTTTCAATCAAAAATGTAAAACAATTCAACATGAAA
453 GAGGTAAACATTTAATTATAACTCTTTTTTAA-CAAAAATGTAAAAAAATTCAACTTAAAA
* ** * * *
10281133 TCAATAATAAGATTATAAAATC-ATTTAAAATAGGTAATAAGGATTTCAAAGGCATGGGTGACTA
1 TCAATAATGAGATTATAAAA-CAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTA
* * * * *
10281197 TAAATGGACTTTTCTTGTTAATGGATGGCTTTCAC-TCAGAGTTTCCCAAGGTAAACATTCAATT
65 TAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCA-AGTTTCTCAAGGTAAACATTCAATT
* *
10281261 ACAAAC-AGTTTTAATGAAAAAAGTAAAAAAATTCAACTTAAAATCAA
129 ACAATCTA-TTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAA
10281308 NNNNNNNNNN
Statistics
Matches: 2680, Mismatches: 483, Indels: 160
0.81 0.15 0.05
Matches are distributed among these distances:
509 164 0.06
510 360 0.13
511 772 0.29
512 1143 0.43
513 229 0.09
514 12 0.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (512 bp):
TCAATAATGAGATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTAT
AAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCAAGTTTCTCAAGGTAAACATTCAATTAC
AATCTATTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACTAT
TTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA
TGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTTATTTCTAATCTGTTTTAACCAAAAATGTAA
AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAG
GTAAACATTTAATTATAACTCTTTTTTAACAAAAATGTAAAAAAATTCAACTTAAAA
Found at i:10281916 original size:20 final size:20
Alignment explanation
Indices: 10281899--10281936 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
10281889 CCTCAAATCT
10281899 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
10281919 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
10281937 GGGGTCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:10286288 original size:18 final size:19
Alignment explanation
Indices: 10286249--10286290 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
10286239 TTAATATTTT
10286249 AATATTATTTTATTAATAA
1 AATATTATTTTATTAATAA
*
10286268 AATATTATTTTATT-TTAA
1 AATATTATTTTATTAATAA
10286286 AATAT
1 AATAT
10286291 GCTTTTCACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATATTATTTTATTAATAA
Found at i:10287532 original size:252 final size:249
Alignment explanation
Indices: 10287061--10287548 Score: 576
Period size: 252 Copynumber: 1.9 Consensus size: 249
10287051 TTTTAGTTGG
* * ** *
10287061 ACAATATAAATTTAAATGTTTAATTTTTCTGAAAAAATTTATTTTTACTTAATTGACTTGTTATG
1 ACAATATAAATTTAAATATTTAATTTTTCTAAAAAAATTTATTTCGACTTAATTGACTTGTTATA
* * * * * **
10287126 CTCAATCTTATACATTTACATCAATATTTTAACTAAGGTAGTTCCACCTTTATTATTTTTTATGT
66 CTAAATCTTACACAGTTACATCAATACTTTAACTAAGCTAGTTCCACCTTTATTATTTTTTACAT
* * * *
10287191 TACTTCTTACCGATTTACATCAAGGTTTTTCAATTGCTAATTTCATTATATGTATTTTTATCCTC
131 TAATTCTTACAGATTTACATCAAGGTTTTTCAATTGCTAATTTCACTATATGTATTTTTATCATC
* *
10287256 ATTATTATTCTATTATATATTAAAATTTATAAACAGTTAAAAACTCTTAGCTCA
196 ATTAGTATTCTATTATAAATTAAAATTTATAAACAGTTAAAAACTCTTAGCTCA
10287310 ACAATATAAATTTAAATATTTAATTTTTAC-AAAAATTATATTTATTTCGACTTAATTGACTTGT
1 ACAATATAAATTTAAATATTTAATTTTT-CTAAAAA--A-ATTTATTTCGACTTAATTGACTTGT
* * * * * *
10287374 TATATTAAAT-TTCACACAGTTACATTAATACTTTGAC-AATGCTTGTTCCATCTTTATTTTTTT
62 TATACTAAATCTT-ACACAGTTACATCAATACTTTAACTAA-GCTAGTTCCACCTTTATTATTTT
* *
10287437 TTACATTAATTCTTACA-AGTTTACGTGAAGGTTTTTCAATTGCTAATTTTCACTATAAT-TATT
125 TTACATTAATTCTTACAGA-TTTACATCAAGGTTTTTCAATTGCTAA-TTTCACTAT-ATGTATT
* * *
10287500 TTTAT-ATTATTAGTATTCCT-TTATAAATTAAAATTTGTAAACCGTTAAA
187 TTTATCATCATTAGTATT-CTATTATAAATTAAAATTTATAAACAGTTAAA
10287549 CACATTAAAC
Statistics
Matches: 200, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
249 31 0.16
250 1 0.00
251 6 0.03
252 141 0.70
253 19 0.09
254 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.48
Consensus pattern (249 bp):
ACAATATAAATTTAAATATTTAATTTTTCTAAAAAAATTTATTTCGACTTAATTGACTTGTTATA
CTAAATCTTACACAGTTACATCAATACTTTAACTAAGCTAGTTCCACCTTTATTATTTTTTACAT
TAATTCTTACAGATTTACATCAAGGTTTTTCAATTGCTAATTTCACTATATGTATTTTTATCATC
ATTAGTATTCTATTATAAATTAAAATTTATAAACAGTTAAAAACTCTTAGCTCA
Found at i:10288212 original size:12 final size:12
Alignment explanation
Indices: 10288192--10288222 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10288182 TTGCTATTTT
10288192 TTATTATCATTA
1 TTATTATCATTA
*
10288204 TTTTTATCATTA
1 TTATTATCATTA
10288216 TTATTAT
1 TTATTAT
10288223 TCCTTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATTATCATTA
Found at i:10288511 original size:252 final size:250
Alignment explanation
Indices: 10288050--10288583 Score: 610
Period size: 252 Copynumber: 2.1 Consensus size: 250
10288040 ATTTTATAGT
* *
10288050 AATTATGTTTATTTGACTTAATTGACTTGTTACATTCAAATTCACACATTTACGTTAATATTTTG
1 AATTATGTTTATTTGACTTAATTGACTTGTTACATTCAAATTCACACAATTACGTCAATATTTTG
* * * *
10288115 ACAATACTTAATCGAATTTTATAATTTTTTTACATTAATTCTTATAAGTTTACATGAACGTTTTC
66 ACAATACTTAATCGAACTTTATAA-TTTTTTACATTAATTCTGACAAGTTTACATCAACGTTTTC
* * * * *
10288180 AATTGCTATTTTTTATTATCATTATTTTTATCATTATTATTATTCCTTATAAATTAAAATTTGTA
130 AATTGCTAGTTTTCATTATAATTATTTTTATCATTATGATTATTCCTTATAAATTAAAATTTATA
* * * * *
10288245 AATTATTCAATACTTTAAACTCAAGAATATAAACTTAAGTGTTTAATTTTCTAAAAA
195 AATCATTAAATACTTTAAACTCAAGAATAAAAACTTAAATGTATAATTTTCT-AAAA
*
10288302 AATTATGTTTATTTGACTTAATTGACTTGTTATATT-AAATCTCACACAATTACGTCAATATTTT
1 AATTATGTTTATTTGACTTAATTGACTTGTTACATTCAAAT-TCACACAATTACGTCAATATTTT
* ** ** * * ** **
10288366 GACAATCCTTGTTTTACCTTTATAA-TTTTTATATTAATTCTGACGGGTTTATGTCAA-GATTTT
65 GACAATACTTAATCGAACTTTATAATTTTTTACATTAATTCTGACAAGTTTACATCAACG--TTT
* *
10288429 TCAATTAG-TAGTTTTCATTATAATTATTTTTATCCTTATGATTATTCATT-TAAAACTTAAAAT
128 TCAATT-GCTAGTTTTCATTATAATTATTTTTATCATTATGATTATTCCTTAT-AAA-TTAAAAT
* * ** * *
10288492 TTATAAATCATTAAATACTTTTAGCTCAATCATAAAAATTTAAATGTATAATTTTCTCAAA
190 TTATAAATCATTAAATACTTTAAACTCAAGAATAAAAACTTAAATGTATAATTTTCTAAAA
* * *
10288553 AATTATATTTATTTTAATTAATTGACTTGTT
1 AATTATGTTTATTTGACTTAATTGACTTGTT
10288584 GCACTAAATC
Statistics
Matches: 237, Mismatches: 39, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
249 1 0.00
250 25 0.11
251 83 0.35
252 128 0.54
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.48
Consensus pattern (250 bp):
AATTATGTTTATTTGACTTAATTGACTTGTTACATTCAAATTCACACAATTACGTCAATATTTTG
ACAATACTTAATCGAACTTTATAATTTTTTACATTAATTCTGACAAGTTTACATCAACGTTTTCA
ATTGCTAGTTTTCATTATAATTATTTTTATCATTATGATTATTCCTTATAAATTAAAATTTATAA
ATCATTAAATACTTTAAACTCAAGAATAAAAACTTAAATGTATAATTTTCTAAAA
Found at i:10293189 original size:129 final size:129
Alignment explanation
Indices: 10292959--10293219 Score: 387
Period size: 129 Copynumber: 2.0 Consensus size: 129
10292949 GTGGCCCGAA
* **
10292959 CGTGAGGTGCACTCAAATCATACCCCAGGAGATACTTCATCCAACATCTCCCCCCGGAGGTAGTT
1 CGTGAGGTGCACTCAAATCATACCCCAGGAGATACTTCATCCAACATCTCCCCCCAGAGGTAAAT
** *
10293024 ATATAATTGAGTTACCGTGCCCCTCTCATAGGCAGTCCATGGAAACCCCCACCACTGCAGTGAC
66 ATATAATTGAGTTACCGTGCCCCTCTCATAGGCAGTCCACAGAAACCCCCACCACTACAGTGAC
* ** * * * *
10293088 CGTGAGGTGCATTCAAATTTTACCTCAGGAGATACTTCATTCAACATCTCCTCCTAGAGGTAAAT
1 CGTGAGGTGCACTCAAATCATACCCCAGGAGATACTTCATCCAACATCTCCCCCCAGAGGTAAAT
* *
10293153 ATATAATTGGGTTACCGTGCCCCTCTCATAGGCAGTCCACAGAAACTCCCACCACTACAGTGAC
66 ATATAATTGAGTTACCGTGCCCCTCTCATAGGCAGTCCACAGAAACCCCCACCACTACAGTGAC
10293217 CGT
1 CGT
10293220 TTAATATACC
Statistics
Matches: 117, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (129 bp):
CGTGAGGTGCACTCAAATCATACCCCAGGAGATACTTCATCCAACATCTCCCCCCAGAGGTAAAT
ATATAATTGAGTTACCGTGCCCCTCTCATAGGCAGTCCACAGAAACCCCCACCACTACAGTGAC
Found at i:10300138 original size:171 final size:170
Alignment explanation
Indices: 10299910--10300269 Score: 488
Period size: 171 Copynumber: 2.1 Consensus size: 170
10299900 AGGATAAGTT
* * * * *
10299910 CATTTATAGTCACTTATACCTTCGAAAGTCTTATTACTTGCTTTAAATGGTTTTATAATCTAACA
1 CATTTATAGTCACTCATGCCTTCGAAAGCCGTATTACTTACTTTAAATGGTTTTATAATCTAACA
* * *
10299975 ATTGATTTTAAGTTGAATTTTTTTTTGCATTTTTGGTTAAAATAGGTTATAATTGAATATTTACC
66 ATTGATTTTAAGTTGAA--TTTTTTTACATTTTTGGTTAAAACAAGTTATAATTGAATATTTACC
* *
10300040 TCAAAAAATGTGAAGCGAAAGCCATCCATTGAC-AAAAAATC
129 TCAAAAAACGTGAAACGAAAGCCATCCATTGACAAAAAAATC
* * * *
10300081 CATTTATAGTCACGCATGCCTTCGAAAGCCGTATTACTTACTTTTAATGGTTTTATAATCTCATA
1 CATTTATAGTCACTCATGCCTTCGAAAGCCGTATTACTTACTTTAAATGGTTTTATAATCTAACA
* * * *
10300146 ATTGATTTTCAGTTGAATTTTTTTACCTTTTTGGTTAAAACAAGTTATAATTGAATATTTGCCTT
66 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAGTTATAATTGAATATTTACCTC
*** *
10300211 TGGAAACGTGAAACGGAAGCCATCCATTGACAAAAAAAATC
131 AAAAAACGTGAAACGAAAGCCATCCATTGAC-AAAAAAATC
10300252 CATTTATAGTCACTCATG
1 CATTTATAGTCACTCATG
10300270 TTGTAACACC
Statistics
Matches: 164, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
169 67 0.41
171 97 0.59
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (170 bp):
CATTTATAGTCACTCATGCCTTCGAAAGCCGTATTACTTACTTTAAATGGTTTTATAATCTAACA
ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAGTTATAATTGAATATTTACCTC
AAAAAACGTGAAACGAAAGCCATCCATTGACAAAAAAATC
Found at i:10301518 original size:28 final size:28
Alignment explanation
Indices: 10301486--10301553 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
10301476 ACCCATAACC
*
10301486 AAGAAGAAAAGAGAAAGGAGAGGAAAGA
1 AAGAAGAAAAGAGAAAGGAAAGGAAAGA
*
10301514 AAGAAGAAAAGAGAAAGGAAAGTAAAGA
1 AAGAAGAAAAGAGAAAGGAAAGGAAAGA
*
10301542 AAGAAAAAAAGA
1 AAGAAGAAAAGA
10301554 AAAATAGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.01
Consensus pattern (28 bp):
AAGAAGAAAAGAGAAAGGAAAGGAAAGA
Found at i:10305017 original size:11 final size:11
Alignment explanation
Indices: 10304983--10305014 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
10304973 ATGAACCGAC
10304983 TAATATATTAA
1 TAATATATTAA
10304994 TAATATATTAA
1 TAATATATTAA
10305005 TAATAT-TTAA
1 TAATATATTAA
10305015 ATATTATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.19
11 17 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAATATATTAA
Found at i:10306842 original size:22 final size:22
Alignment explanation
Indices: 10306814--10306865 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
10306804 NNNNNNNNNN
10306814 TTTTAAAGATAAGAGCTTTTGG
1 TTTTAAAGATAAGAGCTTTTGG
*
10306836 TTTTAAAGATAAGAGTTTTTGG
1 TTTTAAAGATAAGAGCTTTTGG
10306858 TTTTAAAG
1 TTTTAAAG
10306866 TGGTTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (22 bp):
TTTTAAAGATAAGAGCTTTTGG
Found at i:10327537 original size:33 final size:35
Alignment explanation
Indices: 10327459--10327539 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 35
10327449 TTCAACAGGG
*
10327459 TCAGGCATAACCTTTACAACATGCCTTTTGCAAGA
1 TCAGGCGTAACCTTTACAACATGCCTTTTGCAAGA
* * * *
10327494 TTAGGTGTAACCTTTACGACTTGCC-TTT-CAAGA
1 TCAGGCGTAACCTTTACAACATGCCTTTTGCAAGA
*
10327527 TCATGCGTAACCT
1 TCAGGCGTAACCT
10327540 CTGCCAAAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 15 0.39
34 3 0.08
35 20 0.53
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (35 bp):
TCAGGCGTAACCTTTACAACATGCCTTTTGCAAGA
Found at i:10330015 original size:171 final size:169
Alignment explanation
Indices: 10329713--10331748 Score: 1769
Period size: 171 Copynumber: 11.9 Consensus size: 169
10329703 TTTTTGATGA
*
10329713 AGAAAGGTTA-TAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA
1 AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA
* * * * * *
10329777 AGGTC-ATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTGTTATAATC
66 AAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGT-TTATAATC
* *
10329841 TCATTATTGAATTTAAGTTGAATATTTTTACAATTTGTT-TT
130 TCATTATTGATTTTAAGTTGAATTTTTTTAC-ATTT-TTGTT
* * * * * *
10329882 CAGAAACGTTAGAAAATAAATGTTTACCTCGAAAAACATGAAGCGAAAGCCATCTATTGGCAAGA
1 -AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGA
* * *
10329947 AAAGTCTATTTATAGTCACTCATGCCTTCAAAAGGCTTATTACTCGCTTTAAATGGTTTATGATC
65 AAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTATAATC
* * * *
10330012 TCATTATTGGTTTTATGTTGAATGTTTTTGCATTTTTGGTT
130 TCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTT
* * ** * * *
10330053 A-AAACAGATT-GTAATTGAATGTTTGTCT-AAGGAAACTTGAAGCAAAAGCCATCAATTGACAA
1 AGAAAC-G-TTAGTAAATAAATGTTTACCTCGA-GAAACGTGAAGCAAAAGCCATCCATTGACAA
* * * * ** * ** *
10330115 -CAAAGTTTCATATATAGTCTCTCATGCCTTCGAGTGCCTTATTACTTGGGTTAAATTGTTTTAT
63 GAAAAGTCT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA-TGGTTTAT
* * * **
10330179 AATCTCATTACTGATTTGAAGTTTAATTTTTTTTACATTTTTCAT
126 AATCTCATTATTGATTTTAAGTTGAA-TTTTTTTACATTTTTGTT
* * * *
10330224 AAAAACAGATTA-TAATTAAATATTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAG
1 AGAAAC-G-TTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAG
* *
10330288 AAAAGTCCATTTATAGTCAC-CTATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTATAA
64 AAAAGTCTATTTATAGTCACTC-ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTATAA
* *
10330352 TCTCATTATTGATTTTAAGTTAAATTTTTTTACGTTTTTGGTT
128 TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTT
* * ** * *
10330395 AAGAAAGGTTA-TAAATAAATTTTTACCTCGAGAAACAAGAGGCGAAAGCCATCCATTGACAAGA
1 -AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGA
* * * * * * * * * *
10330459 AAGGTC-ATTCATAGCCACACATGCCGTCGACAGCTTTATTACTTGCTTTCAACGGTTTTATAAT
65 AAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG-TTTATAAT
* * *
10330523 CTCATTATTGATTTTATGTTGAATATTTTCACATTTTT-TT
129 CTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGTT
* * * ** * * *
10330563 AGAAAGGTTA-AAAATAAATGTTTGCCTCGAGAAACGTGAAGTGAAAGTCATCTATTGGCAAGAA
1 AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA
* * *
10330627 AAGTCTATTTATAGTCACTCATGCCTTCAAAAGGCTTATTACTCGCTTTAAATGGTTTTATGATC
66 AAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG-TTTATAATC
* * * *
10330692 TCATTATTGGTTTTATGTTGAATTGTTTTGCATTTTTGGTT
130 TCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTT
* * * * * * * * *
10330733 A-AAACATATTGTAATTAAATGTTTGCCTTGGGAAACTTGAAGCAAAAGCCATCAATTGACAA-C
1 AGAAACGT-TAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGA
* * * * *** * *
10330796 AAAGTTTCATATATAGTCGCTCATGCCTTTGAGTTCCTTATTACTTG-TGTTAAATTGTTTCATA
65 AAAGTCT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCT-TTAAATGGTTT-ATA
* * **
10330860 ATCTCATTACTGATTTTAAGTTGAATTTTTTTACATGTTTCAT
127 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGTT
* * * *
10330903 A-ATACAGATTA-TAATTGAATGTTTACCTCGAGAAAGGTGAAGCAAAAGCCATCCATTGACAAG
1 AGAAAC-G-TTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAG
* * * * *
10330966 AAAAGTCCATTTATAGTCAC-CTATGCCTTTGAATGCCTTAATACTCGCTTTAAGTGGTTTTATA
64 AAAAGTCTATTTATAGTCACTC-ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG-TTTATA
* * **
10331030 ATCTTAGTATTGATTTTAAGTTGAATTTTTTTATGTTTTTAGTT
127 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTT
* * * * *
10331074 AAGAAAGGTTA-TAAATAAATGTTTACCTCGAGAAACATGAAGCGAAGGTCATCCATTGACAA-A
1 -AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGA
* * * * * *
10331137 AAAGGTCCATTTATAGTCACTCATGCCTTTGACAGCTTTATTACTTGCTTTAAACGGTTTTATAA
65 AAA-GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG-TTTATAA
** *
10331202 TCTCATTATTGATTTTAAGTTGAATTTTTTCCCATTTGTTTTT
128 TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTT-TTGTT
* * * ** * *
10331245 CAGAAAGGTTAG-AAACAAATGTTTGCCTCGAGAAACGTGAAGTGAAAGCCATCTATTGTCAAGA
1 -AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGA
* * * * * *
10331309 ACAGTCTATTTATAGTCACTCATGGCTTCGAAAGGCTTATTACTCGTTTTAAATGATTTTATGAT
65 AAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG-GTTTATAAT
* * *
10331374 CTCATTATTGGTTTTACGTTGAATTTTTTTATATTTTTAGTT
129 CTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTT
* * * * * * *
10331416 A-AAACAAATT-GTAATTAAATGTTTGCCTTGGGAAA-GTTGAAGCAAAAGTCATCAATTGACAA
1 AGAAAC--GTTAGTAAATAAATGTTTACCTCGAGAAACG-TGAAGCAAAAGCCATCCATTGACAA
* * * * ** * * *
10331478 -CAAAGTCTCATATATAGTCGCTCAAGCCTTCGAGTGCCTTATTACTTGTTTTAAATTGTTTTAT
63 GAAAAGTCT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA-TGGTTTAT
* *
10331542 AATCTCATTACTGATTTTAAGTTGATATTATTTTT-TATTTTT-TCAT
126 AATCTCATTATTGATTTTAAGTTGA-ATT-TTTTTACATTTTTGT--T
* ** * * *
10331588 A-AAAC--TAGCCTATAATTGAATGTTTACCTTTAGAAACCTGAAGCCAAAGCCATCCATTGATA
1 AGAAACGTTAG--TA-AA-TAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACA
* * * * *
10331650 AGAAAAATCCATTTATAGTCAC-CTATGCCTTTGAAAGCCTTATTATTCGCTTTAAGTGGTTTTA
62 AGAAAAGTCTATTTATAGTCACTC-ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGG-TTTA
*
10331714 TAATCTTATTATTGATTTTAAGTTGAATTTTTTTA
125 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
10331749 TGTTTTCAGT
Statistics
Matches: 1508, Mismatches: 295, Indels: 124
0.78 0.15 0.06
Matches are distributed among these distances:
167 58 0.04
168 82 0.05
169 60 0.04
170 354 0.23
171 656 0.44
172 181 0.12
173 112 0.07
174 5 0.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (169 bp):
AGAAACGTTAGTAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA
AAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTATAATCT
CATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGTT
Found at i:10330330 original size:342 final size:340
Alignment explanation
Indices: 10329727--10331748 Score: 2120
Period size: 342 Copynumber: 5.9 Consensus size: 340
10329717 AGGTTATAAA
* * * * *
10329727 TAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAG-GTCAT-TCATAG
1 TAAATGTTTGCCTCG-GAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATAT-ATAG
* * * *
10329790 TCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTGTTATAATCTCATTATTGAATTT
64 TCACTCATGCCTTCGACAGCCTTATTACTTGCTTTAAACGGTTTTATAATCTCATTACTGATTTT
* * * *
10329855 AAGTTGAATATTTTTACAATTTGTTTTCA-GAAAC-G-TTAGAAAATAAATGTTTACCTCGAAAA
129 AAGTTGAATTTTTTTAC-A--T-TTTTCATAAAACAGATTA-TAAATAAATGTTTACCTCGAGAA
* * * * * *
10329917 ACATGAAGCGAAAGCCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGG
189 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGC
* * * * *
10329982 CTTATTACTCGCTTTAAATGG-TTTATGATCTCATTATTGGTTTTATGTTGAATGTTTTTGCATT
254 CTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATT
10330046 TTTGGTTAAAACAGATTGTAAT
319 TTTGGTTAAAACAGATTGTAAT
* * *
10330068 TGAATGTTTGTCTAAGGAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGT
1 TAAATGTTTGCCT-CGGAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGT
* ** ** ** *
10330133 CTCTCATGCCTTCGAGTGCCTTATTACTTGGGTTAAATTGTTTTATAATCTCATTACTGATTTGA
65 CACTCATGCCTTCGACAGCCTTATTACTTGCTTTAAACGGTTTTATAATCTCATTACTGATTTTA
* * * *
10330198 AGTTTAATTTTTTTTACATTTTTCATAAAAACAGATTATAATTAAATATTTACCTTGAGAAACGT
130 AGTTGAA-TTTTTTTACATTTTTCAT-AAAACAGATTATAAATAAATGTTTACCTCGAGAAACGT
* *
10330263 GAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCCTTTGAAAGCCTT
193 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGCCTT
* *
10330327 ATTACTCGCTTTAAATGG-TTTATAATCTCATTATTGATTTTAAGTTAAATTTTTTTACGTTTTT
257 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * *
10330391 GGTTAAGAA-AGGTTATAAA
322 GGTTAA-AACAGATTGTAAT
* * ** * * * * *
10330410 TAAATTTTTACCTCGAGAAACAAGAGGCGAAAGCCATCCATTGACAAGAAAG-GTCAT-TCATAG
1 TAAATGTTTGCCTCG-GAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATAT-ATAG
* * * * * *
10330473 CCACACATGCCGTCGACAGCTTTATTACTTGCTTTCAACGGTTTTATAATCTCATTATTGATTTT
64 TCACTCATGCCTTCGACAGCCTTATTACTTGCTTTAAACGGTTTTATAATCTCATTACTGATTTT
* * * * * * * *
10330538 ATGTTGAATATTTTCACATTTTT-TTAGAA-AGGTTAAAAATAAATGTTTGCCTCGAGAAACGTG
129 AAGTTGAATTTTTTTACATTTTTCATAAAACAGATTATAAATAAATGTTTACCTCGAGAAACGTG
* * * * * * *
10330601 AAGTGAAAGTCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGGCTTAT
194 AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTAT
* * * * *
10330666 TACTCGCTTTAAATGGTTTTATGATCTCATTATTGGTTTTATGTTGAATTGTTTTGCATTTTTGG
259 TACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGG
*
10330731 TTAAAACATATTGTAAT
324 TTAAAACAGATTGTAAT
*
10330748 TAAATGTTTGCCTTGGGAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGT
1 TAAATGTTTGCC-TCGGAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGT
* * *** ** *
10330813 CGCTCATGCCTTTGAGTTCCTTATTACTTG-TGTTAAATTGTTTCATAATCTCATTACTGATTTT
65 CACTCATGCCTTCGACAGCCTTATTACTTGCT-TTAAACGGTTTTATAATCTCATTACTGATTTT
* * * * *
10330877 AAGTTGAATTTTTTTACATGTTTCATAATACAGATTATAATTGAATGTTTACCTCGAGAAAGGTG
129 AAGTTGAATTTTTTTACATTTTTCATAAAACAGATTATAAATAAATGTTTACCTCGAGAAACGTG
* * *
10330942 AAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCCTTTGAATGCCTTA
194 AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGCCTTA
* * * * ** *
10331006 ATACTCGCTTTAAGTGGTTTTATAATCTTAGTATTGATTTTAAGTTGAATTTTTTTATGTTTTTA
258 TTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTG
* * *
10331071 GTTAAGAA-AGGTTATAAA
323 GTTAA-AACAGATTGTAAT
* * * * * * * * * *
10331089 TAAATGTTTACCTCGAGAAACATGAAGCGAAGGTCATCCATTGACAAAAAAGGTCCATTTATAGT
1 TAAATGTTTGCCTCG-GAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGT
* * *
10331154 CACTCATGCCTTTGACAGCTTTATTACTTGCTTTAAACGGTTTTATAATCTCATTATTGATTTTA
65 CACTCATGCCTTCGACAGCCTTATTACTTGCTTTAAACGGTTTTATAATCTCATTACTGATTTTA
** ** * * * * *
10331219 AGTTGAATTTTTTCCCATTTGTTTTTCAGAA-AGGTTAGAAACAAATGTTTGCCTCGAGAAACGT
130 AGTTGAATTTTTTTACATTT-TTCAT-AAAACAGATTATAAATAAATGTTTACCTCGAGAAACGT
* * * * * * *
10331283 GAAGTGAAAGCCATCTATTGTCAAGAACAGTCTATTTATAGTCACTCATGGCTTCGAAAGGCTTA
193 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTA
* * * * * * *
10331348 TTACTCGTTTTAAATGATTTTATGATCTCATTATTGGTTTTACGTTGAATTTTTTTATATTTTTA
258 TTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTG
*
10331413 GTTAAAACAAATTGTAAT
323 GTTAAAACAGATTGTAAT
* * * *
10331431 TAAATGTTTGCCTTGGGAAAGTTGAAGCAAAAGTCATCAATTGACAACAAAGTCTCATATATAGT
1 TAAATGTTTGCC-TCGGAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGT
* * ** * **
10331496 CGCTCAAGCCTTCGAGTGCCTTATTACTTGTTTTAAATTGTTTTATAATCTCATTACTGATTTTA
65 CACTCATGCCTTCGACAGCCTTATTACTTGCTTTAAACGGTTTTATAATCTCATTACTGATTTTA
* ** * * **
10331561 AGTTGATATTATTTTTTA-TTTTTTCATAAAACTAGCCTATAATTGAATGTTTACCTTTAGAAAC
130 AGTTGA-A-T-TTTTTTACATTTTTCATAAAAC-AGATTATAAATAAATGTTTACCTCGAGAAAC
* * * * *
10331625 CTGAAGCCAAAGCCATCCATTGATAAGAAAAATCCATTTATAGTCAC-CTATGCCTTTGAAAGCC
191 GTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGCC
* * *
10331689 TTATTATTCGCTTTAAGTGGTTTTATAATCTTATTATTGATTTTAAGTTGAATTTTTTTA
255 TTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
10331749 TGTTTTCAGT
Statistics
Matches: 1363, Mismatches: 282, Indels: 69
0.80 0.16 0.04
Matches are distributed among these distances:
337 100 0.07
338 96 0.07
339 85 0.06
340 22 0.02
341 382 0.28
342 521 0.38
343 24 0.02
344 128 0.09
345 5 0.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (340 bp):
TAAATGTTTGCCTCGGAAACTTGAAGCAAAAGCCATCAATTGACAACAAAGTTTCATATATAGTC
ACTCATGCCTTCGACAGCCTTATTACTTGCTTTAAACGGTTTTATAATCTCATTACTGATTTTAA
GTTGAATTTTTTTACATTTTTCATAAAACAGATTATAAATAAATGTTTACCTCGAGAAACGTGAA
GCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
CTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT
AAAACAGATTGTAAT
Found at i:10331458 original size:683 final size:682
Alignment explanation
Indices: 10329712--10331768 Score: 3228
Period size: 683 Copynumber: 3.0 Consensus size: 682
10329702 ATTTTTGATG
* *
10329712 AAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA
1 AAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAA
*
10329777 AGGTCATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTGTTATAATCT
66 AGGTCATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTTTTATAATCT
* * * *
10329842 CATTATTGAATTTAAGTTGAATATTTTTACAATTTG-TTTTCAGAAACGTTAGAAAATAAATGTT
131 CATTATTGATTTTAAGTTGAAT-TTTTTCCCATTTGTTTTTCAGAAAGGTTAG-AAATAAATGTT
* * * *
10329906 TACCTCGAAAAACATGAAGCGAAAGCCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATG
194 TGCCTCGAGAAACGTGAAGTGAAAGCCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATG
* *
10329971 CCTTCAAAAGGCTTATTACTCGCTTTAAATGGTTTATGATCTCATTATTGGTTTTATGTTGAATG
259 CCTTCAAAAGGCTTATTACTCGCTTTAAATGTTTTATGATCTCATTATTGGTTTTATGTTGAATT
* * * **
10330036 TTTTTGCATTTTTGGTTAAAACAGATTGTAATTGAATGTTTGTCTAAGGAAACTTGAAGCAAAAG
324 TTTTTGCATTTTTGGTTAAAACAAATTGTAATTAAATGTTTGCCTTGGGAAACTTGAAGCAAAAG
* *
10330101 CCATCAATTGACAACAAAGTTTCATATATAGTCTCTCATGCCTTCGAGTGCCTTATTACTTGGGT
389 CCATCAATTGACAACAAAGTTTCATATATAGTCGCTCATGCCTTCGAGTGCCTTATTACTTGTGT
* *
10330166 TAAATTGTTTTATAATCTCATTACTGATTTGAAGTTTAATTTTTTTTACATTTTTCATAAAAACA
454 TAAATTGTTTTATAATCTCATTACTGATTTTAAGTTGAATTTTTTTTACATTTTTCAT-AAAACA
* *
10330231 GATTATAATTAAATATTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
518 GATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
* *
10330296 ATTTATAGTCACCTATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGG-TTTATAATCTCATTA
583 ATTTATAGTCACCTATGCCTTTGAAAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTATTA
* * *
10330360 TTGATTTTAAGTTAAATTTTTTTACGTTTTTGGTT
648 TTGATTTTAAGTTGAATTTTTTTATGTTTTTAGTT
* * *
10330395 AAGAAAGGTTATAAATAAATTTTTACCTCGAGAAACAAGAGGCGAAAGCCATCCATTGACAAGAA
1 AAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAA
* * * *
10330460 AGGTCATTCATAGCCACACATGCCGTCGACAGCTTTATTACTTGCTTTCAACGGTTTTATAATCT
66 AGGTCATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTTTTATAATCT
* * * *
10330525 CATTATTGATTTTATGTTGAATATTTTCACA-TT-TTTTT-AGAAAGGTTAAAAATAAATGTTTG
131 CATTATTGATTTTAAGTTGAATTTTTTCCCATTTGTTTTTCAGAAAGGTTAGAAATAAATGTTTG
*
10330587 CCTCGAGAAACGTGAAGTGAAAGTCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCC
196 CCTCGAGAAACGTGAAGTGAAAGCCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCC
*
10330652 TTCAAAAGGCTTATTACTCGCTTTAAATGGTTTTATGATCTCATTATTGGTTTTATGTTGAATTG
261 TTCAAAAGGCTTATTACTCGCTTTAAAT-GTTTTATGATCTCATTATTGGTTTTATGTTGAATTT
*
10330717 TTTTGCATTTTTGGTTAAAACATATTGTAATTAAATGTTTGCCTTGGGAAACTTGAAGCAAAAGC
325 TTTTGCATTTTTGGTTAAAACAAATTGTAATTAAATGTTTGCCTTGGGAAACTTGAAGCAAAAGC
* *
10330782 CATCAATTGACAACAAAGTTTCATATATAGTCGCTCATGCCTTTGAGTTCCTTATTACTTGTGTT
390 CATCAATTGACAACAAAGTTTCATATATAGTCGCTCATGCCTTCGAGTGCCTTATTACTTGTGTT
* * *
10330847 AAATTGTTTCATAATCTCATTACTGATTTTAAGTTGAA-TTTTTTTACATGTTTCATAATACAGA
455 AAATTGTTTTATAATCTCATTACTGATTTTAAGTTGAATTTTTTTTACATTTTTCATAAAACAGA
* *
10330911 TTATAATTGAATGTTTACCTCGAGAAAGGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCAT
520 TTATAATTGAATGTTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCAT
* * *
10330976 TTATAGTCACCTATGCCTTTGAATGCCTTAATACTCGCTTTAAGTGGTTTTATAATCTTAGTATT
585 TTATAGTCACCTATGCCTTTGAAAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTATTATT
10331041 GATTTTAAGTTGAATTTTTTTATGTTTTTAGTT
650 GATTTTAAGTTGAATTTTTTTATGTTTTTAGTT
* * *
10331074 AAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACATGAAGCGAAGGTCATCCATTGACAAAAA
1 AAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAA
* *
10331139 AGGTCCATTTATAGTCACTCATGCCTTTGACAGCTTTATTACTTGCTTTAAACGGTTTTATAATC
66 AGGT-CATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTTTTATAATC
*
10331204 TCATTATTGATTTTAAGTTGAATTTTTTCCCATTTGTTTTTCAGAAAGGTTAGAAACAAATGTTT
130 TCATTATTGATTTTAAGTTGAATTTTTTCCCATTTGTTTTTCAGAAAGGTTAGAAATAAATGTTT
* * *
10331269 GCCTCGAGAAACGTGAAGTGAAAGCCATCTATTGTCAAGAACAGTCTATTTATAGTCACTCATGG
195 GCCTCGAGAAACGTGAAGTGAAAGCCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATGC
* * *
10331334 CTTCGAAAGGCTTATTACTCGTTTTAAATGATTTTATGATCTCATTATTGGTTTTACGTTGAATT
260 CTTCAAAAGGCTTATTACTCGCTTTAAATG-TTTTATGATCTCATTATTGGTTTTATGTTGAATT
** * *
10331399 TTTTTATATTTTTAGTTAAAACAAATTGTAATTAAATGTTTGCCTTGGGAAAGTTGAAGCAAAAG
324 TTTTTGCATTTTTGGTTAAAACAAATTGTAATTAAATGTTTGCCTTGGGAAACTTGAAGCAAAAG
* * * *
10331464 TCATCAATTGACAACAAAGTCTCATATATAGTCGCTCAAGCCTTCGAGTGCCTTATTACTTGTTT
389 CCATCAATTGACAACAAAGTTTCATATATAGTCGCTCATGCCTTCGAGTGCCTTATTACTTGTGT
*
10331529 TAAATTGTTTTATAATCTCATTACTGATTTTAAGTTGATATTATTTTTTA-TTTTTTCATAAAAC
454 TAAATTGTTTTATAATCTCATTACTGATTTTAAGTTGA-ATT-TTTTTTACATTTTTCATAAAAC
** * * * * *
10331593 TAGCCTATAATTGAATGTTTACCTTTAGAAACCTGAAGCCAAAGCCATCCATTGATAAGAAAAAT
517 -AGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGT
*
10331658 CCATTTATAGTCACCTATGCCTTTGAAAGCCTTATTATTCGCTTTAAGTGGTTTTATAATCTTAT
581 CCATTTATAGTCACCTATGCCTTTGAAAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTAT
*
10331723 TATTGATTTTAAGTTGAATTTTTTTATGTTTTCAGTT
646 TATTGATTTTAAGTTGAATTTTTTTATGTTTTTAGTT
*
10331760 AGGAAAGGT
1 AAGAAAGGT
10331769 CATTCATAGT
Statistics
Matches: 1255, Mismatches: 107, Indels: 21
0.91 0.08 0.02
Matches are distributed among these distances:
678 112 0.09
679 226 0.18
680 281 0.22
681 8 0.01
682 11 0.01
683 437 0.35
684 1 0.00
685 12 0.01
686 167 0.13
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (682 bp):
AAGAAAGGTTATAAATAAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAA
AGGTCATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGGTTTTATAATCT
CATTATTGATTTTAAGTTGAATTTTTTCCCATTTGTTTTTCAGAAAGGTTAGAAATAAATGTTTG
CCTCGAGAAACGTGAAGTGAAAGCCATCTATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCC
TTCAAAAGGCTTATTACTCGCTTTAAATGTTTTATGATCTCATTATTGGTTTTATGTTGAATTTT
TTTGCATTTTTGGTTAAAACAAATTGTAATTAAATGTTTGCCTTGGGAAACTTGAAGCAAAAGCC
ATCAATTGACAACAAAGTTTCATATATAGTCGCTCATGCCTTCGAGTGCCTTATTACTTGTGTTA
AATTGTTTTATAATCTCATTACTGATTTTAAGTTGAATTTTTTTTACATTTTTCATAAAACAGAT
TATAATTGAATGTTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATT
TATAGTCACCTATGCCTTTGAAAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTATTATTG
ATTTTAAGTTGAATTTTTTTATGTTTTTAGTT
Found at i:10331857 original size:110 final size:110
Alignment explanation
Indices: 10331659--10331858 Score: 269
Period size: 110 Copynumber: 1.8 Consensus size: 110
10331649 AAGAAAAATC
* * ** * *
10331659 CATTTATAGTCACCTATGCCTTTGAAAGCCTTATTATTCGCTTTAAGTGGTTTTATAATCTTATT
1 CATTCATAGTCACCTATGCCTTCGAAAGCCTTATTATTCGCTTTAAACGATTTTATAATCTCATT
*
10331724 ATTGATTTTAAGTTGAATTTTTTTATGTTTTCAGTTAGGAAAGGT
66 ATTGATTTTAAGTTAAATTTTTTTATGTTTTCAGTTAGGAAAGGT
* * *
10331769 CATTCATAGTCA-CTCATGCCTTCGACAGCTTTATTACTT-GCTTTAAACGATTTTTTAATCTCA
1 CATTCATAGTCACCT-ATGCCTTCGAAAGCCTTATTA-TTCGCTTTAAACGATTTTATAATCTCA
*
10331832 TTATTGATTTTATGTTAAATTTTTTTA
64 TTATTGATTTTAAGTTAAATTTTTTTA
10331859 CATTTTTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
109 2 0.03
110 73 0.95
111 2 0.03
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48
Consensus pattern (110 bp):
CATTCATAGTCACCTATGCCTTCGAAAGCCTTATTATTCGCTTTAAACGATTTTATAATCTCATT
ATTGATTTTAAGTTAAATTTTTTTATGTTTTCAGTTAGGAAAGGT
Found at i:10332062 original size:171 final size:170
Alignment explanation
Indices: 10331774--10332721 Score: 912
Period size: 171 Copynumber: 5.5 Consensus size: 170
10331764 AAGGTCATTC
* * * *
10331774 ATAGTCACTCATGCCTTCGACA-GCTTTATTACTTGCTTTAAACGATTTTTTAATCTCATTATTG
1 ATAGTCACTCATGCCTTTGAAAGGC-TTATTACTTGCTTTAAATGATTTTATAATCTCATTATTG
* * ** * *
10331838 ATTTTATGTTAAATTTTTTTACATTTTTTTTTCAGAAAGGTTAG-AAATAAATGTTTGCCTTGAG
65 ATTTTATGTTGAATGTTTTTAC-TTTTTTGATCAAAAAGATT-GTAAATAAATGTTTGCCTTGAG
*
10331902 AAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTT
128 AAACGTGAAGCAAAAGCCATCTATTGACAAGAAAAGTCTATTT
* * *
10331945 ATAGTCACTCATG-CTTTGAAAAGGCTTATTACTCGCTTTAAATGGTTTTATGATCTCATT-TTG
1 ATAGTCACTCATGCCTTTG-AAAGGCTTATTACTTGCTTTAAATGATTTTATAATCTCATTATT-
* * * * * *
10332008 GGTTTTATGTTGATTTTTTTTACTTTTTTGATCAAAACAGATTGTAATTAAATGTCTGCCTTGGG
64 GATTTTATGTTGAATGTTTTTACTTTTTTGATCAAAA-AGATTGTAAATAAATGTTTGCCTTGAG
* * * * *
10332073 AAACTTGAAGCAAAAGCCATCAATTGACAA-CAAAGTTTCATAT
128 AAACGTGAAGCAAAAGCCATCTATTGACAAGAAAAGTCT-ATTT
** * * *** * * * *
10332116 ATAGTCGTTGATGCCTTCGCTTGCCTTATTACTTG-TGTTAAATTATTTTATAATCCCATTACTG
1 ATAGTCACTCATGCCTTTGAAAGGCTTATTACTTGCT-TTAAATGATTTTATAATCTCATTATTG
* * * * * * * * **
10332180 ATTTTAAGTTGAATTTTTTTACATTTTTCATAAAAACAGATTATAATTAAATGTTTACCTCAAGA
65 ATTTTATGTTGAATGTTTTTACTTTTTTGATCAAAA-AGATTGTAAATAAATGTTTGCCTTGAGA
* * * *
10332245 AACGTGAAGTAAAAGCCATCCATTGATAAGAAAAGTCCATTT
129 AACGTGAAGCAAAAGCCATCTATTGACAAGAAAAGTCTATTT
* * *
10332287 ATAGTCACTTATGCCTTTGAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATTATTGA
1 ATAGTCACTCATGCCTTTGAAAGGCTTATTACTTGCTTTAAATGATTTTATAATCTCATTATTGA
* * * * * *
10332352 TTTTGA-GTTGAATGTTTTTA-TGTTTTCGGTTAAGAAAGGTTATAAATAAATGTTTACCTTGAG
66 TTTT-ATGTTGAATGTTTTTACT-TTTTTGATCAA-AAAGATTGTAAATAAATGTTTGCCTTGAG
* *
10332415 AAACGTGAAGCAAAAGCCATCTATTGACAAGAAAGGTC-ATTC
128 AAACGTGAAGCAAAAGCCATCTATTGACAAGAAAAGTCTATTT
* * * * * *
10332457 GTAGTCATTCATGCC-TTCAACA-ACTTTATTACTTGCTTTAAACGGTTTTATAATCTCATTATT
1 ATAGTCACTCATGCCTTTGAA-AGGC-TTATTACTTGCTTTAAATGATTTTATAATCTCATTATT
* ** * * * *
10332520 GATTTTATGTTGAATGGTTTTACATTTTTTTTTCAGAAAGGTTAG-CAATAAAAGTTTGCCTTGA
64 GATTTTATGTTGAATGTTTTTAC-TTTTTTGATCAAAAAGATT-GTAAATAAATGTTTGCCTTGA
* *
10332584 GAAACGTAAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTT
127 GAAACGTGAAGCAAAAGCCATCTATTGACAAGAAAAGTCTATTT
** * *
10332628 ATAGTCACTCATGCCTTCAAAAGGCTTATTACTTGCTTTAAATGATTTTATGATCTCATTATTGG
1 ATAGTCACTCATGCCTTTGAAAGGCTTATTACTTGCTTTAAATGATTTTATAATCTCATTATTGA
* * *
10332693 TTTTTTGTTGAATTGTTTTTGCATTTTTG
66 TTTTATGTTGAA-TGTTTTTACTTTTTTG
10332722 GTTAAAACAG
Statistics
Matches: 636, Mismatches: 117, Indels: 48
0.79 0.15 0.06
Matches are distributed among these distances:
169 6 0.01
170 156 0.25
171 446 0.70
172 28 0.04
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.41
Consensus pattern (170 bp):
ATAGTCACTCATGCCTTTGAAAGGCTTATTACTTGCTTTAAATGATTTTATAATCTCATTATTGA
TTTTATGTTGAATGTTTTTACTTTTTTGATCAAAAAGATTGTAAATAAATGTTTGCCTTGAGAAA
CGTGAAGCAAAAGCCATCTATTGACAAGAAAAGTCTATTT
Found at i:10332426 original size:342 final size:339
Alignment explanation
Indices: 10331763--10332712 Score: 1142
Period size: 342 Copynumber: 2.8 Consensus size: 339
10331753 TTCAGTTAGG
* * * * *
10331763 AAAGGTCATTCATAGTCACTCATGCCTTCGACAGCTTTATTACTTGCTTTAAACGATTTTTTAAT
1 AAAGGTCATTCATAGTCATTCATGCCTTCAACAACCTTATTACTTGCTTTAAACGATTTTATAAT
* *
10331828 CTCATTATTGATTTTATGTTAAATTTTTTTACATTTTTTTTTCAGAAAGGTTAGAAATAAATGTT
66 CTCATTATTGATTTTATGTTGAATTTTTTTACATTTTTTTTTCAGAAAGGTTA-CAATAAATGTT
10331893 TGCCTTGAGAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGTCACTCATG
130 TGCCTTGAGAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGTCACTCATG
*
10331958 -CTTTGAAAAGGCTTATTACTCGCTTTAAATGGTTTTATGATCTCATT-TTGGGTTTTATGTTGA
195 CCTTTG-AAAGGCTTATTACTTGCTTTAAATGGTTTTATGATCTCATTATT-GGTTTTA-GTTGA
* * * * * * * *
10332021 TTTTTTTTACTTTTTTGATCAAAACAGATTGTAATTAAATGTCTGCCTTGGGAAACTTGAAGCAA
257 ATGTTTTTACTTTTTCGATCAAAACAGATTATAAATAAATGTCTACCTTGAGAAACGTGAAGCAA
10332086 AAGCCATCAATTGACAAC
322 AAGCCATCAATTGACAAC
* * * * ** **
10332104 AAAGTTTCATAT-ATAGTCGTTGATGCCTTC-GCTTGCCTTATTACTTG-TGTTAAATTATTTTA
1 AAAG-GTCAT-TCATAGTCATTCATGCCTTCAAC-AACCTTATTACTTGCT-TTAAACGATTTTA
* * * ** * * * *
10332166 TAATCCCATTACTGATTTTAAGTTGAATTTTTTTACA-TTTTTCATAAAAACAGATTATAATTAA
62 TAATCTCATTATTGATTTTATGTTGAATTTTTTTACATTTTTTTTTCAGAA-AGGTTACAA-TAA
* ** ** * * *
10332230 ATGTTTACCTCAAGAAACGTGAAGTAAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCAC
125 ATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGTCAC
* * * *
10332295 TTATGCCTTTGAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTGAGT
190 TCATGCCTTTGAAAGGCTTATTACTTGCTTTAAATGGTTTTATGATCTCATTATTGGTTTT-AGT
* * * *
10332360 TGAATGTTTTTA-TGTTTTCGGTTAAGAA-AGGTTATAAATAAATGTTTACCTTGAGAAACGTGA
254 TGAATGTTTTTACT-TTTTCGATCAA-AACAGATTATAAATAAATGTCTACCTTGAGAAACGTGA
* *
10332423 AGCAAAAGCCATCTATTGACAAG
317 AGCAAAAGCCATCAATTGACAAC
* * *
10332446 AAAGGTCATTCGTAGTCATTCATGCCTTCAACAACTTTATTACTTGCTTTAAACGGTTTTATAAT
1 AAAGGTCATTCATAGTCATTCATGCCTTCAACAACCTTATTACTTGCTTTAAACGATTTTATAAT
** *
10332511 CTCATTATTGATTTTATGTTGAATGGTTTTACATTTTTTTTTCAGAAAGGTTAGCAATAAAAGTT
66 CTCATTATTGATTTTATGTTGAATTTTTTTACATTTTTTTTTCAGAAAGGTTA-CAATAAATGTT
*
10332576 TGCCTTGAGAAACGTAAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGTCACTCATG
130 TGCCTTGAGAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGTCACTCATG
** * *
10332641 CCTTCAAAAGGCTTATTACTTGCTTTAAATGATTTTATGATCTCATTATTGGTTTTTTGTTGAAT
195 CCTTTGAAAGGCTTATTACTTGCTTTAAATGGTTTTATGATCTCATTATTGG-TTTTAGTTGAA-
10332706 TGTTTTT
258 TGTTTTT
10332713 GCATTTTTGG
Statistics
Matches: 504, Mismatches: 87, Indels: 35
0.81 0.14 0.06
Matches are distributed among these distances:
340 1 0.00
341 209 0.41
342 283 0.56
343 11 0.02
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.41
Consensus pattern (339 bp):
AAAGGTCATTCATAGTCATTCATGCCTTCAACAACCTTATTACTTGCTTTAAACGATTTTATAAT
CTCATTATTGATTTTATGTTGAATTTTTTTACATTTTTTTTTCAGAAAGGTTACAATAAATGTTT
GCCTTGAGAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCTATTTATAGTCACTCATGC
CTTTGAAAGGCTTATTACTTGCTTTAAATGGTTTTATGATCTCATTATTGGTTTTAGTTGAATGT
TTTTACTTTTTCGATCAAAACAGATTATAAATAAATGTCTACCTTGAGAAACGTGAAGCAAAAGC
CATCAATTGACAAC
Found at i:10333165 original size:171 final size:171
Alignment explanation
Indices: 10332833--10335850 Score: 2600
Period size: 171 Copynumber: 17.7 Consensus size: 171
10332823 NNNNNNNNNN
* * * * * *
10332833 ACCTCGAGAAAGGTGAGGCTAAAACCC-TCTGTTGATAGAAAAAGACCATTTATAGTTACTCATG
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTC-GTTGACAGGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
10332897 CCTTTAG-AAGCCTTATTGCTCGCTTAAAATGGTTTTATAATCTTATAATTGATTTTAAGTTCAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
* ** *
10332961 TTTTCCTACATTTTTCATTAAAACAGATTATAATTGAATATTT
130 TTTT-TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * * *
10333004 ACCTGGGGAAACATGAGGCTAAAACCCTTCGTGGACAGGAAAAGTTCGTGTATAGTCACTCAAGC
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
10333069 CTTCAG-AAGCCTTATAACTTGCTTTAAATGGTTTTATAATCTCATAATTAATCTTAAGTTGAAT
66 CTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT
* * * * *
10333133 TCTTTTATATTTTCGATTAAGAA-AGGTTATAATTGATTGTTT
131 T-TTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTT
* * ** * * ** ** *
10333175 ACCTCGAGAAACGTGAAGCGAAAGCTATCCATCAACTCGAAAAGTCCATTTATAGTCACTCATAC
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATGC
* * * *
10333240 CTT-TGAAAGACTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGACTTTAGGTTGAAT
66 CTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT
10333304 TTTCTTACA-TTTTGGTTAAAACAGATTATAATTGAATGTTT
131 TTT-TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
10333345 GCCTTCG-GAAACGTGAAGCGAAAGCCATT-GATTGACAAGAAAAATCCATTTATTGCCACTCAT
1 ACC-TCGAGAAACGTGAAGCTAAAACCCTTCG-TTGACAGGAAAAGTCCATTTATAGTCACTCAT
* * *
10333408 GCCTGT--TAAAGCCTTATTACTCACTTTAAAATGGTTTTATAATCTCATTATTGACTTTAAGTT
64 GCCT-TCAGAAAGCCTTATTACTCGCTTT-AAATGGTTTTATAATCTCATTATTGATTTTAAGTT
* * * *
10333471 GAATTTTCTTACA-TTTTAGTTAAAACAGATCATAATTGATTATTT
127 GAATTTT-TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * * *
10333516 GCCTCAAGAAACATGAGGCTAAAACCCTCCATTGAAAGGAAAAGCCCATTTATAGTTGA-TCATG
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAG-TCACTCATG
** * * * *
10333580 CCTTC-GGCAGCCTTATTACTCACGTAAAATGGTTTTATAATCTCATCATTGATTTT-AGATTGA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG-TTGA
* * * * *
10333643 ATTTTTTATATTTTAGATTAAGAA-AGTTTATAATTAAATGTTT
129 ATTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTT
* * * * * * * * *
10333686 GCCTCAAGAAATC-TAAAGC-GAAAGCCATCGATTGACAAGAAAAGTTCGTTTATAGTCACTCAT
1 ACCTCGAGAAA-CGTGAAGCTAAAACCCTTCG-TTGACAGGAAAAGTCCATTTATAGTCACTCAT
* * * * *
10333749 GCCTT-TGAAAGCCTTATTACTCACTTTAATTGGTTTTATAATCTCATAAATGATTTTTAAGTTG
64 GCCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGA-TTTTAAGTTG
* *
10333813 AAGTTTTTTACATTTTTTGTTAAAAAAGATTATAATTGAATGTTT
128 AA-TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
10333858 ACCTC-AGGAAACATGATGCTAAAACCCTCCGTTGATAGTAAAAGTCCGTTTATAGTCACTTAGG
1 ACCTCGA-GAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATG
* * * * **
10333922 CCTTCAAAAAGCCTGATTACTGGCTTTAAATGGTTTTATAATCTCATTCTTGATTTTAAGCTAAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG-TTGA
* * * *
10333987 ATTTGCTTAAATTTTTGGTTAAAATAGATTGTAATTGAATGTTT
129 ATTT-TTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
10334031 ACCTCGAGAAACGTGAAGC-GAAAGCCATCGATTAACAAGAAAAGTCCATTTATAGTTACTTATA
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCG-TTGACAGGAAAAGTCCATTTATAGTCACTCATG
* *
10334095 CCTTC-GAAAGCCTTATTACTCGATTTAAATGGTTTTATCATCTCATTATTGATTTTAAGTTGAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
*
10334159 TTTTCTTGA-AGTTTTGGTTAAAACAGATTATAATTGAATGTTT
130 TTTT-TT-ACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
10334202 GCCTTGGGAAACGTGAAG-TGAAAGCCATCGATTGACAAGAAAAGTCTATTTATAGTCACTCATG
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCG-TTGACAGGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
10334266 CCTT-TGAAAGTCTTATTACTTGCTTTAAATGG-TTTGTAATCTAATTATTAATTTTAAGTTGAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
* * * *
10334329 TTTTTTTACATTTTTTGTTAAAACATATTGTAATTAAATGTTT
130 -TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * **
10334372 ACCTTGGGAAACGTGAGGCTAAAACACTCCATTGACAGGAAAAGTCAATGAATAGTCACTCATGC
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * * *
10334437 CTTTAG-AAGCCTTATTACTCACGTAAAATTGTTTGATAATCTCATAATTAATTTTAAGTTGAAT
66 CTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-
* * *
10334501 TTTTTTACATTTTCGGTTAAGAA-AGGTTATAATTAAATGTTT
130 TTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTT
* * * * ** * * * *
10334543 ACCTTGAGAAACATGAAGCGAAAGCTATCCATTAACTA-GAAAAGTCCATTTATAGTCACTCATA
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGAC-AGGAAAAGTCCATTTATAGTCACTCATG
* * * *
10334607 CCTTC-GAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCCCATAATTGAATTTT-AGCTGA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTG-ATTTTAAGTTGA
* * *
10334670 ATTTTCTTATATTTTTGTTTAAAACATATTATAATTGAATGTTT
129 ATTTT-TTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
10334714 GCCTCGAGAAACGTGAAGC-GAAAGCCATCGATTGACAAGAAAAGTTCATTTAGAGTCACTTAT-
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCG-TTGACAGGAAAAGTCCATTTATAGTCACTCATG
* ** * * * * *
10334777 ACTTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCCCATTATTGATTTTAAGTTTAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
*
10334842 TTTTTTTACATTTGTT-GTTAAAGCAGATTATAATTGAATGTTT
130 -TTTTTTACATTT-TTGGTTAAAACAGATTATAATTGAATGTTT
** * * * * * *
10334885 ACCTCGAGAAATATGAGGCTAAAATCCTCCATTAATAGGAAAAGTCCATTTATAGTCACTCATGC
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * * * * *
10334950 CTTTAG-AAGCCTTATTAGTTGCTTAAAATAGTTTTATATTATCATAATTGATTTTAAGTTTATT
66 CTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA-A
* *
10335014 TTTTTTACAATTTTGGTTAAGAA-AGGTTATAATTGAATGTTT
130 TTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTT
* * * * * * *
10335056 ACCTTGAGAAACTTGAAGC-GAAA-GCTATAGATTAACTA-GAAAAGTCTATTTATAGTCACTCA
1 ACCTCGAGAAACGTGAAGCTAAAACCCT-TCG-TTGAC-AGGAAAAGTCCATTTATAGTCACTCA
*
10335118 TGCCTTC-GAAAGCCTTATTACCCG-TTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTT
63 TGCCTTCAGAAAGCCTTATTACTCGCTTT-AAATGGTTTTATAATCTCATTATTGATTTTAAGTT
* *
10335181 GAATTTTTTTACATTTTTTGTTAAAGCAGATTATAATTGAATGTTT
127 GAA-TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * * * * *
10335227 ATCTC-AGAAAATGTGAGGCTAAAACCCTCCGTTAATAGGAAAAGTCCATTTACAGTTACCCATG
1 ACCTCGAG-AAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATG
*
10335291 CCTTC-GAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA--TC-TTATTGATTTTAAGTTGAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
**
10335352 TTTTTTTACATTTTTGGTTAAAACAGATTATAATCAAATGTTT
130 -TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * *
10335395 ACCTCGAGAAACGTGAAGC-GAAAGCCATCTATTGAC-GAGAAAAGTTCATTTATAGTCACTCAT
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTC-GTTGACAG-GAAAAGTCCATTTATAGTCACTCAT
* * * * * *
10335458 ACCCTCGGAAAGCCTTATTACTCACATTAAATTGTTTTATAATCTCATTATTGATTTTAAGTTGA
64 GCCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA
*
10335523 ATATTCTTACATTTTTGGTTAACAA-AGATTATAATTGAATGTTT
129 AT-TTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTT
* * * * * * * * *
10335567 GCCTCGGGAAACGTGAAGC-GAAAGCCATCGATTGAGAAGAAAAGTCCATTTAAAGTCACCCATG
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCG-TTGACAGGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
10335631 CCTTC-GAAAGCCTTATTGCACACTTTAAATGG-TTTGTAATCTGATTATTGATTTTCAGTTGAA
65 CCTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
* ** * *
10335694 TTTTTTTACTTTTTTTTTTGAAAACAGGTTATAATTAAATG-TT
130 -TTTTTTACATTTTTGGTT-AAAACAGATTATAATTGAATGTTT
* * * * * * * *
10335737 ACCTCGAGAAATGCGAGGCTAAAACCC-TCATTGGCATGAAAAGCCCATTTATAGTCACTCATAC
1 ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATGC
* ** * *
10335801 CTTTAG-AAGCCTTATTACT-AATTTAAAATGATTTTATAATCTCATAATTG
66 CTTCAGAAAGCCTTATTACTCGCTTT-AAATGGTTTTATAATCTCATTATTG
10335851 NNNNNNNNNN
Statistics
Matches: 2316, Mismatches: 442, Indels: 179
0.79 0.15 0.06
Matches are distributed among these distances:
167 7 0.00
168 103 0.04
169 100 0.04
170 474 0.20
171 1204 0.52
172 295 0.13
173 132 0.06
174 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (171 bp):
ACCTCGAGAAACGTGAAGCTAAAACCCTTCGTTGACAGGAAAAGTCCATTTATAGTCACTCATGC
CTTCAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT
TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTT
Found at i:10333612 original size:341 final size:342
Alignment explanation
Indices: 10332833--10335850 Score: 2939
Period size: 342 Copynumber: 8.8 Consensus size: 342
10332823 NNNNNNNNNN
** * ** * * * *
10332833 ACCTCGAGAAAGGTGAGGCTAAAACCCTCTGTTGATAGAAAAAGACCATTTATAGTTACTCATGC
1 ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGAAAGGAAAAGTCCATTTATAGTCACTCATGC
* * * * * *
10332898 CTT-TAGAAGCCTTATTGCTCGCTTAAAATGGTTTTATAATCTTATAATTGATTTTAAGTTCAAT
66 CTTCGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT
* ** * * * * * *
10332962 TTTCCTACATTTTTCATTAAAACAGATTATAATTGAATATTTACCTGGGGAAACATGAGGCTAAA
130 TTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGC-GAA
* * * * * * * * * * **
10333027 ACCCTTCG-TGGACAGGAAAAGTTCGTGTATAGTCACTCAAGCCTTCAGAAGCCTTATAACTTGC
194 AGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTA-AAGCCTTATTACTCAC
* * * * * *
10333091 TTT-AAATGGTTTTATAATCTCATAATTAATCTTAAGTTGAATTCTT-TTATATTTTCGATTAAG
258 TTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTCTTACATTTTTGGTTAA-
* *
10333154 AA-AGGTTATAATTGATTGTTT
321 AACAGATTATAATTGAATGTTT
* * * ** * ** *
10333175 ACCTCGAGAAACGTGAAGCGAAAGCTATCCA-TCAACTCGAAAAGTCCATTTATAGTCACTCATA
1 ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGAA-AGGAAAAGTCCATTTATAGTCACTCATG
* * * *
10333239 CCTTTGAAAGACTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGACTTTAGGTTGAAT
65 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT
*
10333304 TTTCTTACA-TTTTGGTTAAAACAGATTATAATTGAATGTTTGCCTTCG-GAAACGTGAAGCGAA
130 TTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC-TCGAGAAACGTGAAGCGAA
* * * *
10333367 AGCCATTGATTGACAAGAAAAATCCATTTATTGCCACTCATGCCTGTTAAAGCCTTATTACTCAC
194 AGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TTAAAGCCTTATTACTCAC
* *
10333432 TTTAAAATGGTTTTATAATCTCATTATTGACTTTAAGTTGAATTTTCTTACA-TTTTAGTTAAAA
258 TTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAA
* * *
10333496 CAGATCATAATTGATTATTT
323 CAGATTATAATTGAATGTTT
* * * * *
10333516 GCCTCAAGAAACATGAGGCTAAAACCCTCCATTGAAAGGAAAAGCCCATTTATAGTTGA-TCATG
1 ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGAAAGGAAAAGTCCATTTATAG-TCACTCATG
** * * * *
10333580 CCTTCGGCAGCCTTATTACTCACGTAAAATGGTTTTATAATCTCATCATTGATTTT-AGATTGAA
65 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG-TTGAA
* * * * * * * *
10333644 TTTT-TTATATTTTAGATTAAGAA-AGTTTATAATTAAATGTTTGCCTCAAGAAATC-TAAAGCG
129 TTTTCTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAA-CGTGAAGCG
* *
10333706 AAAGCCATCGATTGACAAGAAAAGTTCGTTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTC
192 AAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-AAAGCCTTATTACTC
* * * *
10333771 ACTTT-AATTGGTTTTATAATCTCATAAATGATTTTTAAGTTGAAGTTTT-TTACATTTTTTGTT
256 ACTTTAAAATGGTTTTATAATCTCATTATTGA-TTTTAAGTTGAA-TTTTCTTACATTTTTGGTT
*
10333834 AAAAAAGATTATAATTGAATGTTT
319 AAAACAGATTATAATTGAATGTTT
* * * * * * *
10333858 ACCTC-AGGAAACATGATGCTAAAACCCTCCGTTGATAGTAAAAGTCCGTTTATAGTCACTTAGG
1 ACCTCGA-GAAACATGAAGCTAAAACCCTCCATTGAAAGGAAAAGTCCATTTATAGTCACTCATG
* * * * **
10333922 CCTTCAAAAAGCCTGATTACTGGCTTTAAATGGTTTTATAATCTCATTCTTGATTTTAAGCTAAA
65 CCTTC-GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG-TTGA
* * * *
10333987 ATTTGCTTAAATTTTTGGTTAAAATAGATTGTAATTGAATGTTTACCTCGAGAAACGTGAAGCGA
128 ATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGA
* * * * *
10334052 AAGCCATCGATTAACAAGAAAAGTCCATTTATAGTTACTTATACCTTCGAAAGCCTTATTACTCG
193 AAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-TAAAGCCTTATTACTC-
* *
10334117 A-TTT-AAATGGTTTTATCATCTCATTATTGATTTTAAGTTGAATTTTCTTGA-AGTTTTGGTTA
256 ACTTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTT-ACATTTTTGGTTA
10334179 AAACAGATTATAATTGAATGTTT
320 AAACAGATTATAATTGAATGTTT
* * * * * * * *
10334202 GCCTTGGGAAACGTGAAG-TGAAAGCCATCGATTGACAA-GAAAAGTCTATTTATAGTCACTCAT
1 ACCTCGAGAAACATGAAGCT-AAAACCCTCCATTGA-AAGGAAAAGTCCATTTATAGTCACTCAT
* * * * * *
10334265 GCCTTTGAAAGTCTTATTACTTGCTTTAAATGG-TTTGTAATCTAATTATTAATTTTAAGTTGAA
64 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
* * * * * * * * *
10334329 TTTTTTTACATTTTTTGTTAAAACATATTGTAATTAAATGTTTACCTTGGGAAACGTGAGGCTAA
129 TTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAA
* * * * **
10334394 A-ACACTCCATTGACAGGAAAAGTCAATGAATAGTCACTCATGCCTTTAGAAGCCTTATTACTCA
194 AGCCA-TCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTA-AAGCCTTATTACTCA
* * * * * * *
10334458 C-GTAAAATTGTTTGATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTCGGTTAAG
257 CTTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAA-
* *
10334522 AA-AGGTTATAATTAAATGTTT
321 AACAGATTATAATTGAATGTTT
* * * **
10334543 ACCTTGAGAAACATGAAGCGAAAGCTATCCATT-AACTA-GAAAAGTCCATTTATAGTCACTCAT
1 ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGAA--AGGAAAAGTCCATTTATAGTCACTCAT
* * * * *
10334606 ACCTTCGAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCCCATAATTGAATTTT-AGCTGA
64 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTG-ATTTTAAGTTGA
* * * *
10334670 ATTTTCTTATATTTTTGTTTAAAACATATTATAATTGAATGTTTGCCTCGAGAAACGTGAAGCGA
128 ATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGA
* * * * * * *
10334735 AAGCCATCGATTGACAAGAAAAGTTCATTTAGAGTCACTTATACTTTTGAAAGACTTATTACTCG
193 AAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-AAAGCCTTATTACTCA
* * * *
10334800 C-TTAAAATTGTTTTATAATCCCATTATTGATTTTAAGTTTAATTTTTTTACATTTGTT-GTTAA
257 CTTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACATTT-TTGGTTAA
*
10334863 AGCAGATTATAATTGAATGTTT
321 AACAGATTATAATTGAATGTTT
* * *
10334885 ACCTCGAGAAATATGAGGCTAAAATCCTCCATT-AATAGGAAAAGTCCATTTATAGTCACTCATG
1 ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGAA-AGGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * * * *
10334949 CCTT-TAGAAGCCTTATTAGTTGCTTAAAATAGTTTTATATTATCATAATTGATTTTAAGTTTAT
65 CCTTCGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
* * * * *
10335013 TTTTTTTACAATTTTGGTTAAGAA-AGGTTATAATTGAATGTTTACCTTGAGAAACTTGAAGCGA
129 TTTTCTTACATTTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGA
* * * * * *
10335077 AAGCTATAGATTAACTAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC-C-
193 AAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-TAAAGCCTTATTACTCA
* *
10335140 CGTTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAA
257 C-TTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAA
*
10335205 AGCAGATTATAATTGAATGTTT
321 AACAGATTATAATTGAATGTTT
* * * * * *
10335227 ATCTC-AGAAA-ATGTGAGGCTAAAACCCTCCGTT-AATAGGAAAAGTCCATTTACAGTTACCCA
1 ACCTCGAGAAACA--TGAAGCTAAAACCCTCCATTGAA-AGGAAAAGTCCATTTATAGTCACTCA
*
10335289 TGCCTTCGAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA--TC-TTATTGATTTTAAGTTGA
63 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA
* **
10335351 ATTTTTTTACATTTTTGGTTAAAACAGATTATAATCAAATGTTTACCTCGAGAAACGTGAAGCGA
128 ATTTTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGA
* * * * **
10335416 AAGCCATCTATTGACGAGAAAAGTTCATTTATAGTCACTCATACCCTCGGAAAGCCTTATTACTC
193 AAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCT-TTAAAGCCTTATTACTC
* * *
10335481 ACATT-AAATTGTTTTATAATCTCATTATTGATTTTAAGTTGAATATTCTTACATTTTTGGTTAA
256 ACTTTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAA
10335545 CAA-AGATTATAATTGAATGTTT
321 -AACAGATTATAATTGAATGTTT
* * * * * * * * *
10335567 GCCTCGGGAAACGTGAAGCGAAAGCCATCGATTGAGAA-GAAAAGTCCATTTAAAGTCACCCATG
1 ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGA-AAGGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
10335631 CCTTCGAAAGCCTTATTGCACACTTTAAATGG-TTTGTAATCTGATTATTGATTTTCAGTTGAAT
65 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAAT
* * ** * * * * * *
10335695 TTTTTTACTTTTTTTTTTGAAAACAGGTTATAATTAAATG-TTACCTCGAGAAATGCGAGGCTAA
130 TTTCTTACATTTTTGGTT-AAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAA
* * * * * * *
10335759 AACCCTC-ATTGGCATGAAAAGCCCATTTATAGTCACTCATACCTTTAGAAGCCTTATTACT-AA
194 AGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTA-AAGCCTTATTACTCAC
* *
10335822 TTTAAAATGATTTTATAATCTCATAATTG
258 TTTAAAATGGTTTTATAATCTCATTATTG
10335851 NNNNNNNNNN
Statistics
Matches: 2213, Mismatches: 388, Indels: 152
0.80 0.14 0.06
Matches are distributed among these distances:
338 2 0.00
339 117 0.05
340 250 0.11
341 633 0.29
342 877 0.40
343 101 0.05
344 104 0.05
345 128 0.06
346 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (342 bp):
ACCTCGAGAAACATGAAGCTAAAACCCTCCATTGAAAGGAAAAGTCCATTTATAGTCACTCATGC
CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT
TTCTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAG
CCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAGCCTTATTACTCACTTT
AAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTTTGGTTAAAACAG
ATTATAATTGAATGTTT
Found at i:10335075 original size:513 final size:510
Alignment explanation
Indices: 10332833--10335850 Score: 2980
Period size: 513 Copynumber: 5.9 Consensus size: 510
10332823 NNNNNNNNNN
* ** * * *
10332833 ACCTCGAGAAAGGTGAGGCTAAAACCCTCTGTTGATAGAAAAAGACCATTTATAGTTACTCATGC
1 ACCTCGAGAAACGTGAGGCTAAAACCCTCCATTGATAGGAAAAGTCCATTTATAGTCACTCATGC
* * * *
10332898 CTTTAGAAGCCTTATTGCTCGCTTAAAATGGTTTTATAATCTTATAATTGATTTTAAGTTCAATT
66 CTTTAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
* * ** * * * * * *
10332963 TTCCTACATTTTTCATTAAAACAGATTATAATTGAATATTTACCTGGGGAAACATGAGGCTAAAA
131 TTCTTACAATTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAG
* * * ** * * * * *
10333028 CCCTTCGTGGACAGGAAAAGTTCGTGTATAGTCACTCA-AGCCTTC-AGAAGCCTTATAACTTGC
196 CCATCCATTAACA-GAAAAGTCCATTTATAGTCACTCATA-CCTTCGA-AAGCCTTATTACTCGC
* * * * *
10333091 TTTAAATGGTTTTATAATCTCATAATTAATCTTAAGTTGAATTCTTTTATATTTTCGATTAAGAA
258 TTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTTATATTTTTGTTTAA-AA
* * * * ** **
10333156 -AGGTTATAATTGATTGTTTACCTCGAGAAACGTGAAGCGAAAGCTATCCATCAACTCGAAAAGT
321 CAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGT
* * * *
10333220 CCATTTATAGTCACTCATACCTTTGAAAGACTTATTACTCGCTTTAAATGGTTTTATAATCTCAT
386 TCATTTATAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCTCAT
* * * *
10333285 TATTGACTTTAGGTTGAATTTTCTTACATTTTGGTTAAAACAGATTATAATTGAATGTTT
451 TATTGATTTTAAGTTGAATTTTTTTACATTTTTGTTAAAACAGATTATAATTGAATGTTT
* * * * * ** * * * * *
10333345 GCCTTCG-GAAACGTGAAGCGAAAGCCATTGATTGACAAGAAAAATCCATTTATTGCCACTCATG
1 ACC-TCGAGAAACGTGAGGCTAAAACCCTCCATTGATAGGAAAAGTCCATTTATAGTCACTCATG
* *
10333409 CCTGTTA-AAGCCTTATTACTCACTTTAAAATGGTTTTATAATCTCATTATTGACTTTAAGTTGA
65 CCT-TTAGAAGCCTTATTACTCAC-TTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
* * * * * * * *
10333473 ATTTTCTTAC-ATTTTAGTTAAAACAGATCATAATTGATTATTTGCCTCAAGAAACATGAGGCTA
128 ATTTTCTTACAATTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGA
* * * * * **
10333537 AAACCCTCCATTGAA-AGGAAAAGCCCATTTATAGTTGA-TCATGCCTTCGGCAGCCTTATTACT
193 AAGCCATCCATT-AACA-GAAAAGTCCATTTATAG-TCACTCATACCTTCGAAAGCCTTATTACT
* * * * * *
10333600 CACGTAAAATGGTTTTATAATCTCATCATTGATTTT-AGATTGAATTTTTTATATTTTAGATTAA
255 CGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG-TTGAATTTTTTATATTTTTGTTTAA
* * * * *
10333664 GAA-AGTTTATAATTAAATGTTTGCCTCAAGAAATC-TAAAGCGAAAGCCATCGATTGACAAGAA
319 -AACAGATTATAATTGAATGTTTACCTCGAGAAA-CGTGAAGCGAAAGCCATCGATTGACAAGAA
* * * *
10333727 AAGTTCGTTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTT-TAATTGGTTTTATAAT
382 AAGTTCATTTATAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTAAAATT-GTTTTATAAT
* * * *
10333791 CTCATAAATGATTTTTAAGTTGAAGTTTTTTACATTTTTTGTTAAAAAAGATTATAATTGAATGT
446 CTCATTATTGA-TTTTAAGTTGAATTTTTTTACA-TTTTTGTTAAAACAGATTATAATTGAATGT
10333856 TT
509 TT
* * * * * * *
10333858 ACCTC-AGGAAACATGATGCTAAAACCCTCCGTTGATAGTAAAAGTCCGTTTATAGTCACTTAGG
1 ACCTCGA-GAAACGTGAGGCTAAAACCCTCCATTGATAGGAAAAGTCCATTTATAGTCACTCATG
* * * ** * ** **
10333922 CCTTCAAAAAGCCTGATTACTGGCTTTAAATGGTTTTATAATCTCATTCTTGATTTTAAGCTAAA
65 CCTT-TAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAG-TTGA
* * * *
10333987 ATTTGCTTA-AATTTTTGGTTAAAATAGATTGTAATTGAATGTTTACCTCGAGAAACGTGAAGCG
128 ATTTTCTTACAA-TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCG
* * *
10334051 AAAGCCATCGATTAACAAGAAAAGTCCATTTATAGTTACTTATACCTTCGAAAGCCTTATTACTC
192 AAAGCCATCCATTAAC-AGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTC
* * * *
10334116 GATTTAAATGGTTTTATCATCTCATTATTGATTTTAAGTTGAATTTTCTTGA-AGTTTTGGTTAA
256 GCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT-TT-ATATTTTTGTTTAA
* * * *
10334180 AACAGATTATAATTGAATGTTTGCCTTGGGAAACGTGAAGTGAAAGCCATCGATTGACAAGAAAA
319 AACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAA
* * * * *
10334245 G-TCTATTTATAGTCACTCATGCCTTTGAAAGTCTTATTACTTGCTTTAAA-TGGTTTGTAATCT
384 GTTC-ATTTATAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCT
* * * * *
10334308 AATTATTAATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACATATTGTAATTAAATGTTT
448 CATTATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGTTAAAACAGATTATAATTGAATGTTT
* * * * * **
10334372 ACCTTGGGAAACGTGAGGCTAAAACACTCCATTGACAGGAAAAGTCAATGAATAGTCACTCATGC
1 ACCTCGAGAAACGTGAGGCTAAAACCCTCCATTGATAGGAAAAGTCCATTTATAGTCACTCATGC
* * * *
10334437 CTTTAGAAGCCTTATTACTCACGTAAAATTGTTTGATAATCTCATAATTAATTTTAAGTTGAATT
66 CTTTAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
* * * *
10334502 TTTTTAC-ATTTTCGGTTAAGAA-AGGTTATAATTAAATGTTTACCTTGAGAAACATGAAGCGAA
131 TTCTTACAATTTT-GGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAA
*
10334565 AGCTATCCATTAACTAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGC
194 AGCCATCCATTAAC-AGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGC
* * * *
10334630 TTTAAATGCTTTTATAATCCCATAATTGAATTTT-AGCTGAATTTTCTTATATTTTTGTTTAAAA
258 TTTAAATGGTTTTATAATCTCATTATTG-ATTTTAAGTTGAATTTT-TTATATTTTTGTTTAAAA
* *
10334694 CATATTATAATTGAATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGT
321 CAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGT
* * * * *
10334759 TCATTTAGAGTCACTTATACTTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCCCAT
386 TCATTTATAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCTCAT
* *
10334824 TATTGATTTTAAGTTTAATTTTTTTACATTTGTTGTTAAAGCAGATTATAATTGAATGTTT
451 TATTGATTTTAAGTTGAATTTTTTTACATTT-TTGTTAAAACAGATTATAATTGAATGTTT
** * *
10334885 ACCTCGAGAAATATGAGGCTAAAATCCTCCATTAATAGGAAAAGTCCATTTATAGTCACTCATGC
1 ACCTCGAGAAACGTGAGGCTAAAACCCTCCATTGATAGGAAAAGTCCATTTATAGTCACTCATGC
* ** * * * * *
10334950 CTTTAGAAGCCTTATTAGTTGCTTAAAATAGTTTTATATTATCATAATTGATTTTAAGTTTATTT
66 CTTTAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
* * * *
10335015 TTTTTACAATTTTGGTTAAGAA-AGGTTATAATTGAATGTTTACCTTGAGAAACTTGAAGCGAAA
131 TTCTTACAATTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAA
* ** * * *
10335079 GCTATAGATTAACTAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACCCG-T
195 GCCATCCATTAAC-AGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCT
* *
10335143 TTAAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-TGTTAAAG
259 TT-AAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTATATTTTTGT-TTAAAA
* * * * * * * * *
10335207 CAGATTATAATTGAATGTTTATCTC-AGAAAATGTGAGGCTAAAACCCTCCG-TTAATAGGAAAA
321 CAGATTATAATTGAATGTTTACCTCGAG-AAACGTGAAGCGAAAGCCAT-CGATTGACAAGAAAA
* * * * * * *
10335270 GTCCATTTACAGTTACCCATGCCTTCGAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA--TC
384 GTTCATTTATAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCTC
**
10335333 -TTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATCAAATGTTT
449 ATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAAAACAGATTATAATTGAATGTTT
* * * * * * * *
10335395 ACCTCGAGAAACGTGAAGCGAAAGCCATCTATTGA-CGAGAAAAGTTCATTTATAGTCACTCATA
1 ACCTCGAGAAACGTGAGGCTAAAACCCTCCATTGATAG-GAAAAGTCCATTTATAGTCACTCATG
* ** * *
10335459 CCCTCGGAAAGCCTTATTACTCACATT-AAATTGTTTTATAATCTCATTATTGATTTTAAGTTGA
65 CCTTTAG-AAGCCTTATTACTCAC-TTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
* * * * *
10335523 ATATTCTTACATTTTTGGTTAACAA-AGATTATAATTGAATGTTTGCCTCGGGAAACGTGAAGCG
128 ATTTTCTTACAATTTTGGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCG
* * * * * *
10335587 AAAGCCATCGATTGAGA-AGAAAAGTCCATTTAAAGTCACCCATGCCTTCGAAAGCCTTATTGCA
192 AAAGCCATCCATT-A-ACAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACT
* * * * *
10335651 CACTTTAAATGG-TTTGTAATCTGATTATTGATTTTCAGTTGAATTTTTT-TACTTTTTTTTTTG
255 CGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTATA--TTTTTGTTT-
* * * * * * * * * *
10335714 AAAACAGGTTATAATTAAATG-TTACCTCGAGAAATGCGAGGCTAAAACCCTC-ATTGGCATGAA
317 AAAACAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAA
** * * ***
10335777 AAGCCCATTTATAGTCACTCATACCTTT-AGAAGCCTTATTACTAATTTAAAA-TGATTTTATAA
382 AAGTTCATTTATAGTCACTCATGCCTTTGA-AAGACTTATTACTCGCTTAAAATTG-TTTTATAA
*
10335840 TCTCATAATTG
445 TCTCATTATTG
10335851 NNNNNNNNNN
Statistics
Matches: 2087, Mismatches: 356, Indels: 126
0.81 0.14 0.05
Matches are distributed among these distances:
508 3 0.00
509 65 0.03
510 172 0.08
511 318 0.15
512 490 0.23
513 640 0.31
514 142 0.07
515 147 0.07
516 107 0.05
517 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (510 bp):
ACCTCGAGAAACGTGAGGCTAAAACCCTCCATTGATAGGAAAAGTCCATTTATAGTCACTCATGC
CTTTAGAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
TTCTTACAATTTTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAG
CCATCCATTAACAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTT
AAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTATATTTTTGTTTAAAACAGAT
TATAATTGAATGTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATT
TATAGTCACTCATGCCTTTGAAAGACTTATTACTCGCTTAAAATTGTTTTATAATCTCATTATTG
ATTTTAAGTTGAATTTTTTTACATTTTTGTTAAAACAGATTATAATTGAATGTTT
Found at i:10346628 original size:25 final size:25
Alignment explanation
Indices: 10346600--10346656 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
10346590 AATGATTAAT
10346600 AATATTAATCTTCATACAATAAATA
1 AATATTAATCTTCATACAATAAATA
* *
10346625 AATATTAATCTTTATATAATAAATA
1 AATATTAATCTTCATACAATAAATA
*
10346650 AACATTA
1 AATATTA
10346657 GTTTCAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.39
Consensus pattern (25 bp):
AATATTAATCTTCATACAATAAATA
Found at i:10369204 original size:21 final size:21
Alignment explanation
Indices: 10369178--10369223 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
10369168 ACATCTCTTG
*
10369178 CTGCCTCCTCAGCTGCAGAAA
1 CTGCCTCATCAGCTGCAGAAA
* *
10369199 CTGCCTGATCAGCTGCATAAA
1 CTGCCTCATCAGCTGCAGAAA
10369220 CTGC
1 CTGC
10369224 TGATCTTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.22
Consensus pattern (21 bp):
CTGCCTCATCAGCTGCAGAAA
Found at i:10369636 original size:30 final size:31
Alignment explanation
Indices: 10369614--10369687 Score: 87
Period size: 30 Copynumber: 2.3 Consensus size: 31
10369604 TAAAGATAGA
*
10369614 AAAATAAATTTCAAA-CTAAATAAAATAAAG
1 AAAATAAAATTCAAAGCTAAATAAAATAAAG
* *
10369644 AAAATAAAATTCAAAGCTAACAAAAATATAAAAT
1 AAAATAAAATTCAAAGCTAA-ATAAA-AT-AAAG
10369678 AAAATAAAAT
1 AAAATAAAAT
10369688 AAAATCGTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 14 0.38
31 4 0.11
32 4 0.11
33 2 0.05
34 13 0.35
ACGTcount: A:0.69, C:0.07, G:0.03, T:0.22
Consensus pattern (31 bp):
AAAATAAAATTCAAAGCTAAATAAAATAAAG
Found at i:10373405 original size:252 final size:249
Alignment explanation
Indices: 10372938--10373720 Score: 900
Period size: 252 Copynumber: 3.1 Consensus size: 249
10372928 GGGTATTTCA
* * *
10372938 AAATGTGTG-ATTTTAATGTAATAAGTCAATTATGTCTAATAAACATAGTTTTTGGAGAAATTAA
1 AAATGTGTGAAATTTAATATAATAAGTCAATTATGTCTAATAAACATAATTTTT-GAGAAATTAA
* * *
10373002 ACATTTAAATTGTTATTTTTGAGTTTAAAGTGTTTTACGAT-TTACAAATTTTAATCTATGCATG
65 ACATTTAAATTATTATTCTTGAGTTTAAAGTGTTTTACG-TCTTACAAATTTTAATTTATGCATG
* * *
10373066 AATAATAGTAAGGATAAAAAGAATTAC-AGTGAAAATTAGTATTTAAAAAACCTTGATGGAAAGT
129 AATAATAATAAGGATAAAAAGAATTACGA-TGAAAATTAGTATTT-AAAAACTTTGATGTAAAGT
*
10373130 GGTAAGAATTAACGGAAAACATTATAAAGGTGGAACAAGCATTTTCAAAATATTGATGT
192 GGTAAGAATTAACGTAAAACATTATAAAGGT-GAACAAGCATTTTCAAAATATTGATGT
* * *
10373189 AAATGTGTGAAATTTAACATAACAAGTCAATTTTGTCTAATAAACATAATTTTTAGAGAAATTAA
1 AAATGTGTGAAATTTAATATAATAAGTCAATTATGTCTAATAAACATAATTTTT-GAGAAATTAA
* * *
10373254 ATATTTAAATTATTATTCTTGAGTTTAAAGTGTTTTATGTCTTATAAATTTTAATTTATGCATGA
65 ACATTTAAATTATTATTCTTGAGTTTAAAGTGTTTTACGTCTTACAAATTTTAATTTATGCATGA
* *
10373319 ATAATAATAAGGATAAAAAGAATTACGATGAAAATTAATATTTAAAAAGCTTTGATGTAAAGCGG
130 ATAATAATAAGGATAAAAAGAATTACGATGAAAATTAGTATTTAAAAA-CTTTGATGTAAAGTGG
* * * * *
10373384 TAAAAATTAACATAAAACATTATAAAGGTAAAACAAGCATTTTCAAAACATTGACGT
194 TAAGAATTAACGTAAAACATTATAAAGGT-GAACAAGCATTTTCAAAATATTGATGT
* * * * * * * *
10373441 AAATGTGTGAGATTTAATATAATAAATTAATTATATCTAATAAACATAATTGTTGAAAAAGTATA
1 AAATGTGTGAAATTTAATATAATAAGTCAATTATGTCTAATAAACATAATTTTTGAGAAATTAAA
* * ** * ** * *
10373506 CAATTAAATTTTTATTCTCAAGTTTAAAGTGATTTACAACTTACAAATTTTAATTTATGTATAAA
66 CATTTAAATTATTATTCTTGAGTTTAAAGTGTTTTACGTCTTACAAATTTTAATTTATGCATGAA
* * * *
10373571 TAACT-ATAAGAATAAAAAGAATTATGGT-AAAATTTAGT-TGTTGAAAAA-TATTGACGTAAAG
131 TAA-TAATAAGGATAAAAAGAATTACGATGAAAA-TTAGTAT-TT-AAAAACT-TTGATGTAAAG
* * * * *
10373632 TTGTAAGAATTAACGTAAAACATTATAAAGGTGAAGAAAGAATTGTCAAAATATTGATAT
191 TGGTAAGAATTAACGTAAAACATTATAAAGGTGAA-CAAGCATTTTCAAAATATTGATGT
* *
10373692 AAATATAT-AAGATTTAATGA-AATAAGTCA
1 AAATGTGTGAA-ATTTAAT-ATAATAAGTCA
10373721 TAATAATAAT
Statistics
Matches: 451, Mismatches: 69, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
250 9 0.02
251 181 0.40
252 260 0.58
253 1 0.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (249 bp):
AAATGTGTGAAATTTAATATAATAAGTCAATTATGTCTAATAAACATAATTTTTGAGAAATTAAA
CATTTAAATTATTATTCTTGAGTTTAAAGTGTTTTACGTCTTACAAATTTTAATTTATGCATGAA
TAATAATAAGGATAAAAAGAATTACGATGAAAATTAGTATTTAAAAACTTTGATGTAAAGTGGTA
AGAATTAACGTAAAACATTATAAAGGTGAACAAGCATTTTCAAAATATTGATGT
Found at i:10377990 original size:341 final size:339
Alignment explanation
Indices: 10377270--10379716 Score: 2372
Period size: 341 Copynumber: 7.2 Consensus size: 339
10377260 NNNNNNNNNN
* ** * *
10377270 TAAAACCATTTAAAGCGAGTAATAAGGCTT-TCGAAGGCATGAACGACTATAAAAGGACTTTTCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTCT-AAAGGCATGAGTGACTATAAATGGACTTTTCC
* * * * * ** *
10377334 TGTCAACGGATGGCTTTAGCTTCACGTTTCTCGAGACAAACATAT-AATTATAAAAT-TCATAAC
65 T-ACAATGGAGGGTTTTAGC-TCACGTTTCTCGAGGCAAACAT-TCAATTATAATCTGT-TTAAC
* * *
10377397 CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA-T-TATAACCATTTTAAGCGAGTAA
126 CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTAA
* * * * * * * * *
10377460 TAAGGCTTATAAAGGAATGAGCGACTATAAATGGTCTTTTCCTGTCAACT-GAAGGTTTTAGCCT
191 TAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA-TGGATGGCTTTCGCTT
* * * * * * *
10377524 CACGTTTCCCGAGATAAACATTCAATAATAATTTATTTTAGCAAAAAAATTTAAAACAATTCAAC
255 CACGTTTTCCGAGGTAAACATTCAATTATAATCTATTTTAAC-AAAAAATGTAAAAAAATTCAAC
10377589 TTAAAATCAATAATGAGACTA
319 TTAAAATCAATAATGAGACTA
* * * **
10377610 TAAAAGCATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAGTGAAAATAAATGGACTTTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTCCT
** * * *
10377675 ACAAACAGAGGGTTTTAGCTACACGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTGATCAA
66 AC-AATGGAGGGTTTTAGCT-CACGTTTCTCGAGGCAAACATTCAATTATAATCTGTTTAACCAA
* * * *
10377740 AAATTTAAGAAAATTCAACTTAAAATCAATAATGAAACTATAAAACCATCTAAAGCGAGTAATAA
129 AAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTAATAA
* * *
10377805 GGCTTTTAAAGGTATGAGCGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCTA-
194 GGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC-AC
* * * *
10377869 GTTTTCCGAGGCAAACATTCGATTATAATCTATTTTAACAAAAAATGTGACAAAATTCAACTTAA
258 GTTTTCCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAA
10377934 AATCAATAATGAGACTA
323 AATCAATAATGAGACTA
* * * * * * * *
10377951 TAAAATCGTTTAAAGTGAGTAATAAGGCTTCTGAAGGTATGGGTGACTATAAACGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTCCT
* * * * * * * ** *
10378016 GCCAATGGATGGCTTTCA-CTTCATGTTTCTTGAGGAAAACATTTAATTATAAAAT-TCTTAACT
66 -ACAATGGA-GGGTTTTAGC-TCACGTTTCTCGAGGCAAACATTCAATTATAATCTGT-TTAACC
* * * * *
10378079 GAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTTAAGCGAGCT-A
127 AAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAG-TAA
* * * * * * * * *
10378143 CAAGGCTTTTAAAGGTATGAGTGACTATATATGGTCTTTTCCTGTCAACT-GAGGGTTTTAGCCT
191 TAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA-TGGATGGCTTTCGCTT
* * * * * * * *
10378207 CATGTCTTCCGAGGCAAACATCCAATTATAATCTGTTTTAACCAAAAATGTAAAAAATTTCAGCT
255 CACGTTTTCCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACT
* *
10378272 TAAAATCAATAATCAGATTA
320 TAAAATCAATAATGAGACTA
* *
10378292 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGAAC-TTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTCC-
* * * * * * *
10378356 TCCCATTGGAAGGCTTTCGCTCCACATTTCT-GAGGCAAACTTTCAATTATAATCTGTTTTAACC
65 T-ACAATGGAGGGTTTTAGCT-CACGTTTCTCGAGGCAAACATTCAATTATAATCTG-TTTAACC
*
10378420 AAAAATGTAAAAAAAGTTCAA-TTCAAAATGAATAATGAGACTATAAAACCATTTAAAGCGAGTA
127 AAAAATGTAAAAAAA-TTCAACTT-AAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTA
* ** * *
10378484 ATAAGGCTTCTAAAGGCATGAGTGACTATAAACAGACTTTTCTTGTCACTGGATGGCTTGCGCTT
190 ATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * ** *
10378549 CACG-TTTCTCGACGTAAACATAT-AATTATAA--AATCATAACCAAAAAA-CTAAAAAAATTCA
255 CACGTTTTC-CGAGGTAAACAT-TCAATTATAATCTATTTTAA-CAAAAAATGTAAAAAAATTCA
*
10378609 ACTTAAAATCAATTATGAGA-T-
317 ACTTAAAATCAATAATGAGACTA
* * * * *
10378630 TATAACCATTTTAAGCGAGTAATAAGGCTTCTAAAGGAATGAGTGATTATAAATGGTCTTTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTCCT
* * ** * *
10378695 GTCAACT-GAAGGTTTTAGTCTCACGTTTC-CTGAGATAAACATTCAATAATAATCTGTTTTAGC
66 -ACAA-TGGAGGGTTTTAG-CTCACGTTTCTC-GAGGCAAACATTCAATTATAATCTG-TTTAAC
* * *
10378758 AAAAAAATGTAAAACAATTCATCTTAAAATCAATAATGAGACTAT-AAACCATTTAAAGCGAGTA
126 -CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTA
** * ** ** * *
10378822 ATAAGGCTTTTAAAGGCATGAGTGAAAATAAATGGACTTTTCCTACCAACAGA-GGGTCTTAGCT
190 ATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTCGCT
* * * * * * *
10378886 ACACGTTTCCCAAGGTAAACATTCAATTATAATCT-GTTTAACTAAAAATTTAAGAAAATTCAAC
254 TCACGTTTTCCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAAC
*
10378950 TTCAAATCAATAATGAGACTA
319 TTAAAATCAATAATGAGACTA
* * * *
10378971 TAAAACCATTTAAAGCGAGTAATAAGGCTTAC-GAAGGCATGAGCGACTATAAAAGGACTTTTCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTT-CTAAAGGCATGAGTGACTATAAATGGACTTTTCC
* *** * * * * *
10379035 TGTCAATGGATCACTTTT-GCTTCAAGTTTCCCAAGGCAAACATTCGATTATAATCTATTTTAAC
65 T-ACAATGGA-GGGTTTTAGC-TCACGTTTCTCGAGGCAAACATTCAATTATAATCT-GTTTAAC
* * *
10379099 CAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCTTTTAAAGCAAGTAA
126 CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTAA
* * * * * * **
10379164 TAAAGCTTCTGAAGGCATGGGTGACTGTAAACGGACTTTTCTTGTCAATGGATGGCTTTCATTTC
191 TAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
* * * *
10379229 ACG-TTTCTCGAGGTAAACATTTAATTATAA--AATTCTTAATC-GAAAATGTAAAGAAATTCAA
256 ACGTTTTC-CGAGGTAAACATTCAATTATAATCTATT-TTAA-CAAAAAATGTAAAAAAATTCAA
* *
10379290 CTTAAAATCAATTATGAGATTA
318 CTTAAAATCAATAATGAGACTA
* * * * * * *
10379312 TAAAACCATTTTAAGTGAGCT-ACAAGGCTTTTAAAGGTATGAGTGACTATATATGGTCTTTTCC
1 TAAAACCATTTAAAGCGAG-TAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTCC
* * *
10379376 TATCAATTGAGGGTTTTAGTCTCATGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAACC
65 TA-CAATGGAGGGTTTTAG-CTCACGTTTCTCGAGGCAAACATTCAATTATAATCTG-TTTAACC
* * *
10379441 AAAAATGTAAAAAAATTCAGCTTAAAATCAATAATCAGATTATAAAACCATTTAAAGCGAGTAAT
127 AAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTAAT
* * ** * * *
10379506 AAGGCTTTTAAAGGCATGAGTGACTATAAATGAACTTTCCTTCACATTGGAAGGCTTTCACTTCA
192 AAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * * * *
10379571 TG-TTTCTCGAGGCAAACATTCAAATATAATCTGTTTTAACCAAAAATATAAAAAAATTCAA-TT
257 CGTTTTC-CGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTT
*
10379634 CAAAATGAATAATGAGACTA
321 -AAAATCAATAATGAGACTA
* **
10379654 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGGGACTATAAACAGACTTTTC
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTC
10379717 TTATCNNNNN
Statistics
Matches: 1712, Mismatches: 329, Indels: 130
0.79 0.15 0.06
Matches are distributed among these distances:
337 4 0.00
338 163 0.10
339 97 0.06
340 261 0.15
341 860 0.50
342 324 0.19
343 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (339 bp):
TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAATGGACTTTTCCT
ACAATGGAGGGTTTTAGCTCACGTTTCTCGAGGCAAACATTCAATTATAATCTGTTTAACCAAAA
ATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAGCGAGTAATAAGG
CTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
TTCCGAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAAT
CAATAATGAGACTA
Found at i:10378001 original size:171 final size:172
Alignment explanation
Indices: 10377270--10379718 Score: 2427
Period size: 171 Copynumber: 14.4 Consensus size: 172
10377260 NNNNNNNNNN
** ** *
10377270 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
10377335 GTCAACGGATGGCTTTAGCTTCACG-TTTCTCGAGACAAACATAT-AATTATAA--AATTCATAA
66 GTCAATGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACAT-TCAATTATAATCTATT-TTAA
*
10377396 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA-T-
129 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * * * * *
10377438 TATAACCATTTTAAGCGAGTAATAAGGCTTATAAAGGAATGAGCGACTATAAATGGTCTTTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * ** * * *
10377503 GTCAACT-GAAGGTTTTAGCCTCACG-TTTCCCGAGATAAACATTCAATAATAATTTATTTTAGC
66 GTCAA-TGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAAC
* * *
10377566 AAAAAAATTTAAAACAATTCAACTTAAAATCAATAATGAGACTA
130 -CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * ** *
10377610 TAAAAGCATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAGTGAAAATAAATGGACTTTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* ** * * * * * * *
10377675 -ACAAACAGAGGGTTTTAGCTACACG-TTTCTCGAGGTAAACATTCAATTATAATCT-GTTTGAT
66 GTC-AATGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAAC
* * *
10377737 CAAAAATTTAAGAAAATTCAACTTAAAATCAATAATGAAACTA
130 CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * *
10377780 TAAAACCATCTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAGCGACTATAAAAGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* *
10377845 GTCAATGGATGGCTTTCGCTTCTA-GTTTTC-CGAGGCAAACATTCGATTATAATCTATTTTAAC
66 GTCAATGGATGGCTTTAGCTTC-ACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAAC
* * *
10377908 AAAAAATGTGACAAAATTCAACTTAAAATCAATAATGAGACTA
130 CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * * * * * *
10377951 TAAAATCGTTTAAAGTGAGTAATAAGGCTTCTGAAGGTATGGGTGACTATAAACGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * *
10378016 GCCAATGGATGGCTTTCA-CTTCATG-TTTCTTGAGGAAAACATTTAATTATAA--AATTCTTAA
66 GTCAATGGATGGCTTT-AGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATT-TTAA
** * * *
10378077 CTGAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTA
129 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * * * *
10378121 TAAAACCATTTTAAGCGAGCT-ACAAGGCTTTTAAAGGTATGAGTGACTATATATGGTCTTTTCC
1 TAAAACCATTTAAAGCGAG-TAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * *
10378185 TGTCAACT-GAGGGTTTTAGCCTCATGTCTTC-CGAGGCAAACATCCAATTATAATCTGTTTTAA
65 TGTCAA-TGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAA
* * * *
10378248 CCAAAAATGTAAAAAATTTCAGCTTAAAATCAATAATCAGATTA
129 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* *
10378292 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGAACTTTCCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
** * * * * * * *
10378357 CCCATTGGAAGGCTTTCGCTCCAC-ATTTCT-GAGGCAAACTTTCAATTATAATCTGTTTTAACC
66 GTCAATGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAACC
*
10378420 AAAAATGTAAAAAAAGTTCAA-TTCAAAATGAATAATGAGACTA
131 AAAAATGTAAAAAAA-TTCAACTT-AAAATCAATAATGAGACTA
* **
10378463 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGTGACTATAAACAGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* ** * * * **
10378528 GTCACTGGATGGCTTGCGCTTCACG-TTTCTCGACGTAAACATAT-AATTATAA--AATCATAAC
66 GTCAATGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACAT-TCAATTATAATCTATTTTAAC
** *
10378589 CAAAAAACTAAAAAAATTCAACTTAAAATCAATTATGAGA-T-
130 CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * * * * *
10378630 TATAACCATTTTAAGCGAGTAATAAGGCTTCTAAAGGAATGAGTGATTATAAATGGTCTTTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * ** * * *
10378695 GTCAACT-GAAGGTTTTAG-TCTCACGTTTCCT-GAGATAAACATTCAATAATAATCTGTTTTAG
66 GTCAA-TGGATGGCTTTAGCT-TCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAA
* * *
10378757 CAAAAAAATGTAAAACAATTCATCTTAAAATCAATAATGAGACTA
129 C-CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
** *
10378802 T-AAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGAAAATAAATGGACTTTTCCT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
** ** * * * * * *
10378866 ACCAACAGA-GGGTCTTAGCTACACG-TTTCCCAAGGTAAACATTCAATTATAATCT-GTTTAAC
66 GTCAATGGATGGCT-TTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAAC
* * * *
10378928 TAAAAATTTAAGAAAATTCAACTTCAAATCAATAATGAGACTA
130 CAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
*** * *
10378971 TAAAACCATTTAAAGCGAGTAATAAGGCTTACGAAGGCATGAGCGACTATAAAAGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
** * * * * *
10379036 GTCAATGGATCACTTTTGCTTCAAG-TTTCCCAAGGCAAACATTCGATTATAATCTATTTTAACC
66 GTCAATGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAACC
*
10379100 AAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGACTA
131 AAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * * * * * *
10379142 TAAAACCTTTTAAAGCAAGTAATAAAGCTTCTGAAGGCATGGGTGACTGTAAACGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
10379207 GTCAATGGATGGCTTTCA-TTTCACG-TTTCTCGAGGTAAACATTTAATTATAA--AATTCTTAA
66 GTCAATGGATGGCTTT-AGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATT-TTAA
* * * * *
10379268 TCGAAAATGTAAAGAAATTCAACTTAAAATCAATTATGAGATTA
129 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* * * * * * *
10379312 TAAAACCATTTTAAGTGAGCT-ACAAGGCTTTTAAAGGTATGAGTGACTATATATGGTCTTTTCC
1 TAAAACCATTTAAAGCGAG-TAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * *
10379376 TATCAATTGAGGGTTTTAG-TCTCATG-TTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
65 TGTCAATGGATGGCTTTAGCT-TCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAA
* * *
10379439 CCAAAAATGTAAAAAAATTCAGCTTAAAATCAATAATCAGATTA
129 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
* *
10379483 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGAACTTTCCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
** * * * * *
10379548 CACATTGGAAGGCTTTCA-CTTCATG-TTTCTCGAGGCAAACATTCAAATATAATCTGTTTTAAC
66 GTCAATGGATGGCTTT-AGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAAC
* *
10379611 CAAAAATATAAAAAAATTCAA-TTCAAAATGAATAATGAGACTA
130 CAAAAATGTAAAAAAATTCAACTT-AAAATCAATAATGAGACTA
* * **
10379654 TAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAAGGCATGAGGGACTATAAACAGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
10379719 ATCNNNNNNN
Statistics
Matches: 1885, Mismatches: 337, Indels: 115
0.81 0.14 0.05
Matches are distributed among these distances:
166 2 0.00
167 90 0.05
168 103 0.05
169 73 0.04
170 652 0.35
171 841 0.45
172 123 0.07
173 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (172 bp):
TAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTT
GTCAATGGATGGCTTTAGCTTCACGTTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAACC
AAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGACTA
Found at i:10390174 original size:171 final size:171
Alignment explanation
Indices: 10389835--10392188 Score: 2536
Period size: 171 Copynumber: 13.8 Consensus size: 171
10389825 NNNNNNNNNC
** * * * * * *
10389835 ATCTGTTTTAACTGAAAAGGAAAAAAAATTCAATTTTAAATCAATTATTAGGTTATAAAACCATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * *
10389900 TGAAGCGAGTAATAAGGCTTTCGAGGGCATGAGTGACTATAAATGAACTTTTGTTCTCAATGAAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
* * * *
10389965 GGCTTTCGCTTCACGTTTCCCAAGGCAAATATTCAATTATG
131 GGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* *
10390006 ATCTGTTTTAACCAAAAAGGTAAAAATATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
10390071 TAAAGCAAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGAACTCTTCATCTTAATTAAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
* * * ** * * *
10390136 GGTTTTTGCTTCATGTTTCTTGTGGTAAAGACTCAATTATA
131 GGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * *
10390177 ATATGTTTTAACCAAAAATGGAGAAAAA-TCAACTTAAAATCAATTATGAGATTATAAAACCATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * *
10390241 TAAAGTGAGTAATAAGGCTTTTGAAGCCATGAGTGACTATAAATGATCTTTTCTTCTCGACGATT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
* ** * * * * * * *
10390306 GACTTTCGCTTCATATTTTCTGAGGCACATAGTCAATTATG
131 GGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* ** * * * * * * *
10390347 ATCTGTTTGAACTGAAAAGGTAAAAAAATTTAACAT-AAATGAATTCTAAGATTACAAAACCATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * *
10390411 TGAAGTGAGTAATAAGGCTTTTGAAGGCCTGAGTGACTATAAATGAACTTTTCTTCTTAATGAAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
** *
10390476 GGCTTTCGCTTCACGTTTCTTGAGGTAAGCATTCAATTATA
131 GGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
** * * * * *
10390517 ATCTAATTCACCCAAAAATGTGAAAAAAA-CCAACTTTAAATCGATTAT-ACGATTATAAAACCA
1 ATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGA-GATTATAAAACCA
* * * * *
10390580 TTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTTTTAC-CAATG
64 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT-CTCAATG
* * * ** ** * * *
10390644 GATGGCTTTCACTTTACGTTTCTTGAGACAAATATTCAGTTATG
128 AATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * * * * * * *
10390688 ATTTGTTTGAATCAAAAAGGTAAAAAGATTTAACTTAAAATCAATTGTGAG-TTCATAAAACTAT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT-ATAAAACCAT
* * * * * * *
10390752 TTGAAGCGAGTAATAAGCCTTTTGAAGGTATGAGTGACTATAAATGAACGTTTCTTCCCAATGGA
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAA
* * *
10390817 TGGCTTTCACTTCACGTTTCCTGAGGTAAACATTCAATTATT
130 TGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * * *
10390859 ATCAGTTTTAACTAAAAATGTAAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAATCAT
1 ATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
* *
10390924 TT-AA---AGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGAAGTTTTCTTCTCAATGAA
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAA
* * * * *
10390985 TGGC-TTCTGCTTCAAGTTTCGCAAGGTAAATATTCAATTATG
130 TGGCTTTC-GCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * * *
10391027 ATCTGTTTTAACC-AAAATCGTGAAACAATTCAACTTAAAATCAATTATGCGATTACAAAACCAT
1 ATCTGTTTTAACCAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
* * ** * *
10391091 TTAAAGCGAGTACTCAGGCTTTCGAACTCATGAATGACTATAAATGAACTTTTCTTCTTAATGAA
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAA
** * *
10391156 TATCTTTTGCTTCACGTTTCCCGAGGTAAACATACAATTATA
130 TGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* ** * *
10391198 ATCTTTTTTAATTAAAAATG-AAAATAAATTTCAACTTACAATCAATTATGAGCTTATAAAACCA
1 ATCTGTTTTAACCAAAAATGTAAAA-AAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCA
* * * * *
10391262 TTTAAAGCGAGTAATAGGGCTTTCGAAGCCATAAGTGACTATAAATGGACTCTTCTTAC-CAATG
64 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT-CTCAATG
* * * *
10391326 GATGGCTTTCACTTCACGTTTCCCAAGGTAAACGTTCAATTATA
128 AATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * * * *
10391370 ATCTATTTCAACCAAAAATGTAAAAAAAATCAACTTAAAATAAATTATGGGATTATAAAACCATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * *
10391435 TAAAGTGAGTAATAAGGCTTTCGAAAGCATGAGTTACTATAAA-GATACTCTTCTTCTTAATGAA
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCTTCTCAATGAA
* * *
10391499 AGGCTTTCGTTTCACGTTTCCCAAGGTAAACATTCAATTATA
130 TGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * *
10391541 ATCTGTTTCAACGAAAAATGTAAAAAAA-CCAACTTAAAATCAATTATGAGATTATAAAACCATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * *
10391605 TAAAGCGAGTAATAAGGCTTTCGAAGGCGTGAATGACTATAGATGGACTTTTCTTCTCAATAAAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
* * * * * * *
10391670 GGCTTTCGCTTCAAGTTTCGCAAAGCAAATATTCAATTATG
131 GGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* *
10391711 ATATGTTTTAA-CAAAAATTGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCAT
1 ATCTGTTTTAACCAAAAA-TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
* * **
10391775 TTAAAGCGAGTACTCAA-GCTTTTGAACACATGAGTGACTATAAATGAACTTTTCTTCTCAATGA
65 TTAAAGCGAGTAAT-AAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGA
** * *
10391839 ATATCTTTCACTTCACGTTTCTCGAGGTAAACATTCAATTATA
129 ATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * ** * *
10391882 ATCTTTTTTAACTAAAAATAAAAATAAAATTCAACTTACAATCAATTATGAGCTTATAAAACCAT
1 ATCTGTTTTAACCAAAAATGTAAA-AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
* * *
10391947 TTACAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAAT-AGATTTTTCTTAC-CAATG
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCTT-CTCAATG
* * * ** *
10392010 GATGGCTTTCACTTCATGTTTCCTAAGGTAAACATTCAGTTATA
128 AATGGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
* * * *
10392054 ATCTGTTTTAACCAAAAATGTAAAAAAAATCAACTTAAAATAAATTATGGGATTATAAAACAATT
1 ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
10392119 TAAAGCAAGTAAT-TGGCTTTCGAAGGCATGAGTGACTATATATGAACTTTTCTTCTCAATGGAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
10392183 GGCTTT
131 GGCTTT
10392189 ANNNNNNNNN
Statistics
Matches: 1808, Mismatches: 339, Indels: 73
0.81 0.15 0.03
Matches are distributed among these distances:
167 47 0.03
168 97 0.05
169 6 0.00
170 469 0.26
171 849 0.47
172 332 0.18
173 8 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (171 bp):
ATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAAT
GGCTTTCGCTTCACGTTTCCCGAGGTAAACATTCAATTATA
Found at i:10390573 original size:341 final size:341
Alignment explanation
Indices: 10389835--10392188 Score: 2432
Period size: 341 Copynumber: 6.9 Consensus size: 341
10389825 NNNNNNNNNC
* * * * *
10389835 ATCTGTTTTAACTGAAAA-G-GAAAAAAAATTCAATTTTAAATCAATTATTAGGTTATAAAACCA
1 ATCTATTTTAACTAAAAATGTG-AAAAAAA-TCAACTTTAAATCAATTATGAGATTATAAAACCA
* * * * *
10389898 TTTGAAGCGAGTAATAAGGCTTTCGAGGGCATGAGTGACTATAAATGAACTTTTGTTCTCAATGA
64 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAA-GG
** * **
10389963 ATGGCTTTCGCTTCACGTTTCCCAAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTA
128 ATGGCTTTCGCTTCATATTTTCTGAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTA
* *
10390028 AAAATATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTC
193 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC
* * * * * * * **
10390093 GAAGGTATGAGTGACTATAAATGAACTCTTCATCTTAATTAATGGTTTTTGCTTCATGTTTCTTG
258 GAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCCCG
* * *
10390158 TGGTAAAGACTCAATTATA
323 AGGTAAACATTCAATTATA
* * * * *
10390177 ATATGTTTTAACCAAAAATG-GAGAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATT
1 ATCTATTTTAACTAAAAATGTGAAAAAAATCAACTTTAAATCAATTATGAGATTATAAAACCATT
* * * * *
10390241 TAAAGTGAGTAATAAGGCTTTTGAAGCCATGAGTGACTATAAAT-GATCTTTTCTTCTCGACGAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-CTTTTCTTCTCAAGGA-
* * * * **
10390305 TGACTTTCGCTTCATATTTTCTGAGGCACATAGTCAATTATGATCTGTTTGAACTGAAAAGGTAA
129 TGGCTTTCGCTTCATATTTTCTGAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTAA
* * * * * * * * *
10390370 AAAAATTTAACAT-AAATGAATTCTAAGATTACAAAACCATTTGAAGTGAGTAATAAGGCTTTTG
194 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCG
* **
10390434 AAGGCCTGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCTTGA
259 AAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCCCGA
*
10390499 GGTAAGCATTCAATTATA
324 GGTAAACATTCAATTATA
* * * * * *
10390517 ATCTAATTCACCCAAAAATGTGAAAAAAACCAACTTTAAATCGATTAT-ACGATTATAAAACCAT
1 ATCTATTTTAACTAAAAATGTGAAAAAAATCAACTTTAAATCAATTATGA-GATTATAAAACCAT
* * * *
10390581 TTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTTTTAC-CAATGG
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-CTCAA-GG
* * * * * * *
10390645 ATGGCTTTCACTT--TACGTTTCTTGAGACAAATATTCAGTTATGATTTGTTTGAATCAAAAAGG
128 ATGGCTTTCGCTTCATA-TTTTC-TGAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGG
* * * * * *
10390708 TAAAAAGATTTAACTTAAAATCAATTGTGAG-TTCATAAAACTATTTGAAGCGAGTAATAAGCCT
191 TAAAAAAATTCAACTTAAAATCAATTATGAGATT-ATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * ** * *
10390772 TTTGAAGGTATGAGTGACTATAAATGAACGTTTCTTCCCAATGGATGGCTTTCACTTCACGTTTC
255 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTC
* *
10390837 CTGAGGTAAACATTCAATTATT
320 CCGAGGTAAACATTCAATTATA
* * *
10390859 ATC-AGTTTTAACTAAAAATGTAAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAATCA
1 ATCTA-TTTTAACTAAAAATGT-GAAAAAAATCAACTTTAAATCAATTATGAGATTATAAAACCA
* * * *
10390923 TTT-AA---AGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGAAGTTTTCTTCTCAATGA
64 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAA-GG
* * **
10390984 ATGGC-TTCTGCTTCA-AGTTTC-GCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAATC
128 ATGGCTTTC-GCTTCATATTTTCTG--AGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* * * * * *
10391046 GTGAAACAATTCAACTTAAAATCAATTATGCGATTACAAAACCATTTAAAGCGAGTACTCAGGCT
190 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
** * ** *
10391111 TTCGAACTCATGAATGACTATAAATGAACTTTTCTTCTTAATGAATATCTTTTGCTTCACGTTTC
255 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTC
*
10391176 CCGAGGTAAACATACAATTATA
320 CCGAGGTAAACATTCAATTATA
* * *
10391198 ATCTTTTTTAATTAAAAA--TGAAAATAAATTTCAAC-TTACAATCAATTATGAGCTTATAAAAC
1 ATCTATTTTAACTAAAAATGTGAAAA-AAA--TCAACTTTA-AATCAATTATGAGATTATAAAAC
* * * *
10391260 CATTTAAAGCGAGTAATAGGGCTTTCGAAGCCATAAGTGACTATAAATGGACTCTTCTTAC-CAA
62 CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-CTCAA
* ** * ** * ** * * * *
10391324 TGGATGGCTTTCACTTCACGTTTCCCAAGGTAAACGTTCAATTATAATCTATTTCAACCAAAAAT
126 -GGATGGCTTTCGCTTCATATTTTCTGAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* * * *
10391389 GTAAAAAAAATCAACTTAAAATAAATTATGGGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
190 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * *
10391454 TTCGAAAGCATGAGTTACTATAAA-GATACTCTTCTTCTTAATGAAAGGCTTTCGTTTCACGTTT
255 TTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTT
*
10391518 CCCAAGGTAAACATTCAATTATA
319 CCCGAGGTAAACATTCAATTATA
* * * * *
10391541 ATCTGTTTCAACGAAAAATGT-AAAAAAACCAACTTAAAATCAATTATGAGATTATAAAACCATT
1 ATCTATTTTAACTAAAAATGTGAAAAAAATCAACTTTAAATCAATTATGAGATTATAAAACCATT
* * * **
10391605 TAAAGCGAGTAATAAGGCTTTCGAAGGCGTGAATGACTATAGATGGACTTTTCTTCTCAATAAAT
66 TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAA-GGAT
* * * *
10391670 GGCTTTCGCTTCA-AGTTTC-GCAAAGCAAATATTCAATTATGATATGTTTTAA-CAAAAATTGT
130 GGCTTTCGCTTCATATTTTCTG--AGGCAAATATTCAATTATGATCTGTTTTAACCAAAAA-GGT
* *
10391732 AAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGAGTACTCAA-GCTT
192 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGCTT
* ** * ** * *
10391796 TTGAACACATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATATCTTTCACTTCACGTTTCT
256 TCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCC
10391861 CGAGGTAAACATTCAATTATA
321 CGAGGTAAACATTCAATTATA
* ** *
10391882 ATCTTTTTTAACTAAAAAT-AAAAATAAAATTCAAC-TTACAATCAATTATGAGCTTATAAAACC
1 ATCTATTTTAACTAAAAATGTGAAA-AAAA-TCAACTTTA-AATCAATTATGAGATTATAAAACC
* * * *
10391945 ATTTACAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGATTTTTCTTAC-CAAT
63 ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-CTCAA-
* * * * * * * * *
10392009 GGATGGCTTTCACTTCATGTTTCCTAAGGTAAACATTCAGTTATAATCTGTTTTAACCAAAAATG
126 GGATGGCTTTCGCTTCATATTTTCTGAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGG
* * * * * *
10392074 TAAAAAAAATCAACTTAAAATAAATTATGGGATTATAAAACAATTTAAAGCAAGTAAT-TGGCTT
191 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * *
10392138 TCGAAGGCATGAGTGACTATATATGAACTTTTCTTCTCAATGGATGGCTTT
256 TCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTT
10392189 ANNNNNNNNN
Statistics
Matches: 1668, Mismatches: 290, Indels: 108
0.81 0.14 0.05
Matches are distributed among these distances:
336 4 0.00
337 5 0.00
338 6 0.00
339 259 0.16
340 151 0.09
341 556 0.33
342 219 0.13
343 445 0.27
344 22 0.01
345 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (341 bp):
ATCTATTTTAACTAAAAATGTGAAAAAAATCAACTTTAAATCAATTATGAGATTATAAAACCATT
TAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAAGGATG
GCTTTCGCTTCATATTTTCTGAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTAAAA
AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
GGCATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCCCGAGG
TAAACATTCAATTATA
Found at i:10391880 original size:684 final size:682
Alignment explanation
Indices: 10389835--10392188 Score: 2921
Period size: 682 Copynumber: 3.5 Consensus size: 682
10389825 NNNNNNNNNC
* * * * * * *
10389835 ATCTGTTTTAACTGAAAAGGAAAAAAAATTCAATTTTA-AATCAATTATTAGGTTATAAAACCAT
1 ATCTTTTTTAACTAAAAATGAAAATAAATTCAA-CTTACAATCAATTATGAGCTTATAAAACCAT
* * * * * *
10389899 TTGAAGCGAGTAATAAGGCTTTCGAGGGCATGAGTGACTATAAATGAACTTTTGTT-CTCAATGA
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTAC-CAATGG
* * *
10389963 ATGGCTTTCGCTTCACGTTTCCCAAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTA
129 ATGGCTTTCACTTCACGTTTCCCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAAAGGTA
* * *
10390028 AAAATATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTC
194 AAAAAAATCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTC
* * * * * * *
10390093 GAAGGTATGAGTGACTATAAATGAACTCTTCATCTTAATTAATGGTTTTTGCTTCATGTTTCTTG
259 GAAGGCATGAGTGACTATAAATGAACTCTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCCTG
* * * * * *
10390158 TGGTAAAGACTCAATTATAATATGTTTTAACCAAAAATGGAGAAAAATCAACTTAAAATCAATTA
324 AGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATCAACTTAAAATCAATTA
*
10390223 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGCCATGAGTGACTATAAAT-GA
389 TGAGATTATAAAACCATTTAAAG-GAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGA
* * * * * * *
10390287 TCTTTTCTTCTCGACGATTGACTTTCGCTTCATATTTTCTG--AGGCACATAGTCAATTATGATC
453 -CTTTTCTTCTCAATGAATGGCTTTCGCTTCA-AGTTTC-GCAAGGCAAATATTCAATTATGATC
* * * * * * * * *
10390350 TGTTTGAACTGAAAA-GGTAAAAAAATTTAACAT-AAATGAATTCTAAGATTACAAAACCATTTG
515 TGTTTTAAC-AAAAATCGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTA
* * ** * *
10390413 AAGTGAGTAAT-AAGGCTTTTGAAGGCCTGAGTGACTATAAATGAACTTTTCTTCTTAATGAATG
579 AAGCGAGTACTCAA-GCTTTTGAACACATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATA
* * *
10390477 GCTTTCGCTTCACGTTTCTTGAGGTAAGCATTCAATTATA
643 TCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATA
** * * * * * *
10390517 ATCTAATTCACCCAAAAATGTGAAAA-AAA-CCAACTTTA-AATCGATTAT-ACGATTATAAAAC
1 ATCTTTTTTAACTAAAAA--TGAAAATAAATTCAAC-TTACAATCAATTATGA-GCTTATAAAAC
* * * * *
10390578 CATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTTTTACCAAT
62 CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTACCAAT
* *** * * * * * * *
10390643 GGATGGCTTTCACTTTACGTTTCTTGAGACAAATATTCAGTTATGATTTGTTTGAATCAAAAAGG
127 GGATGGCTTTCACTTCACGTTTCCCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAAAGG
* * * * * * * * *
10390708 TAAAAAGATTTAACTTAAAATCAATTGTGAG-TTCATAAAACTATTTGAAGCGAGTAATAAGCCT
192 TAAAAAAAATCAACTTAAAATAAATTATGAGATT-ATAAAACCATTTAAAGCAAGTAATAAGGCT
* * ** * *
10390772 TTTGAAGGTATGAGTGACTATAAATGAACGT-TTCTTCCCAATGGATGGCTTTCACTTCACGTTT
256 TTCGAAGGCATGAGTGACTATAAATGAAC-TCTTCTTCTTAATGAATGGCTTTCGCTTCACGTTT
* * *
10390836 CCTGAGGTAAACATTCAATTATTATCAGTTTTAACTAAAAATGTAAAAAAAAATCAACTTAAAAT
320 CCTGAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGT--AAAAAAATCAACTTAAAAT
*
10390901 CAATTATGAGATTATAAAATCATTT-AA--AGTAATAAGGCTTTTGAAGGCATGAGTGACTATAA
383 CAATTATGAGATTATAAAACCATTTAAAGGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAA
* * *
10390963 ATGAAGTTTTCTTCTCAATGAATGGC-TTCTGCTTCAAGTTTCGCAAGGTAAATATTCAATTATG
448 ATGGACTTTTCTTCTCAATGAATGGCTTTC-GCTTCAAGTTTCGCAAGGCAAATATTCAATTATG
* * * *
10391027 ATCTGTTTTAACCAAAATCGTGAAACAATTCAACTTAAAATCAATTATGCGATTACAAAACCATT
512 ATCTGTTTTAACAAAAATCGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATT
* * * *
10391092 TAAAGCGAGTACTCAGGCTTTCGAACTCATGAATGACTATAAATGAACTTTTCTTCTTAATGAAT
577 TAAAGCGAGTACTCAAGCTTTTGAACACATGAGTGACTATAAATGAACTTTTCTTCTTAATGAAT
* * *
10391157 ATCTTTTGCTTCACGTTTCCCGAGGTAAACATACAATTATA
642 ATCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATA
*
10391198 ATCTTTTTTAATTAAAAATGAAAATAAATTTCAACTTACAATCAATTATGAGCTTATAAAACCAT
1 ATCTTTTTTAACTAAAAATGAAAATAAA-TTCAACTTACAATCAATTATGAGCTTATAAAACCAT
* * *
10391263 TTAAAGCGAGTAATAGGGCTTTCGAAGCCATAAGTGACTATAAATGGACTCTTCTTACCAATGGA
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTACCAATGGA
* * * * *
10391328 TGGCTTTCACTTCACGTTTCCCAAGGTAAACGTTCAATTATAATCTATTTCAACCAAAAATGTAA
130 TGGCTTTCACTTCACGTTTCCCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAAAGGTAA
* **
10391393 AAAAAATCAACTTAAAATAAATTATGGGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
195 AAAAAATCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCG
* * * * **
10391458 AAAGCATGAGTTACTATAAA-GATACTCTTCTTCTTAATGAAAGGCTTTCGTTTCACGTTTCCCA
260 AAGGCATGAGTGACTATAAATGA-ACTCTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCCTG
* * *
10391522 AGGTAAACATTCAATTATAATCTGTTTCAACGAAAAATGTAAAAAAACCAACTTAAAATCAATTA
324 AGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATCAACTTAAAATCAATTA
* * * *
10391587 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCGTGAATGACTATAGATGGA
389 TGAGATTATAAAACCATTTAAAG-GAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGA
* * *
10391652 CTTTTCTTCTCAATAAATGGCTTTCGCTTCAAGTTTCGCAAAGCAAATATTCAATTATGATATGT
453 CTTTTCTTCTCAATGAATGGCTTTCGCTTCAAGTTTCGCAAGGCAAATATTCAATTATGATCTGT
*
10391717 TTTAACAAAAATTGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGC
518 TTTAACAAAAATCGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGC
*
10391782 GAGTACTCAAGCTTTTGAACACATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATATCTTT
583 GAGTACTCAAGCTTTTGAACACATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATATCTTT
*
10391847 CACTTCACGTTTCTCGAGGTAAACATTCAATTATA
648 CGCTTCACGTTTCTCGAGGTAAACATTCAATTATA
*
10391882 ATCTTTTTTAACTAAAAATAAAAATAAAATTCAACTTACAATCAATTATGAGCTTATAAAACCAT
1 ATCTTTTTTAACTAAAAATGAAAAT-AAATTCAACTTACAATCAATTATGAGCTTATAAAACCAT
* * *
10391947 TTACAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATAGATTTTTCTTACCAATGGA
65 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTACCAATGGA
* * * * *
10392012 TGGCTTTCACTTCATGTTTCCTAAGGTAAACATTCAGTTATAATCTGTTTTAACCAAAAATGTAA
130 TGGCTTTCACTTCACGTTTCCCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAAAGGTAA
* * *
10392077 AAAAAATCAACTTAAAATAAATTATGGGATTATAAAACAATTTAAAGCAAGTAAT-TGGCTTTCG
195 AAAAAATCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCG
* * * *
10392141 AAGGCATGAGTGACTATATATGAACTTTTCTTCTCAATGGATGGCTTT
260 AAGGCATGAGTGACTATAAATGAACTCTTCTTCTTAATGAATGGCTTT
10392189 ANNNNNNNNN
Statistics
Matches: 1437, Mismatches: 204, Indels: 61
0.84 0.12 0.04
Matches are distributed among these distances:
678 1 0.00
679 18 0.01
680 143 0.10
681 136 0.09
682 557 0.39
683 56 0.04
684 520 0.36
685 6 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (682 bp):
ATCTTTTTTAACTAAAAATGAAAATAAATTCAACTTACAATCAATTATGAGCTTATAAAACCATT
TAAAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTACCAATGGAT
GGCTTTCACTTCACGTTTCCCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAAAGGTAAA
AAAAATCAACTTAAAATAAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGA
AGGCATGAGTGACTATAAATGAACTCTTCTTCTTAATGAATGGCTTTCGCTTCACGTTTCCTGAG
GTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATCAACTTAAAATCAATTATG
AGATTATAAAACCATTTAAAGGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTT
TTCTTCTCAATGAATGGCTTTCGCTTCAAGTTTCGCAAGGCAAATATTCAATTATGATCTGTTTT
AACAAAAATCGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGAG
TACTCAAGCTTTTGAACACATGAGTGACTATAAATGAACTTTTCTTCTTAATGAATATCTTTCGC
TTCACGTTTCTCGAGGTAAACATTCAATTATA
Found at i:10403091 original size:31 final size:31
Alignment explanation
Indices: 10403049--10403129 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
10403039 TTGTCAGTCG
*
10403049 TGTTGTTACACGCCATGCAAAT-AATGTAAAA
1 TGTTGTAACACGCCATGCAAATCAA-GTAAAA
* * *
10403080 TGTTGTAACACGTCATGCATATCAAGTCAAA
1 TGTTGTAACACGCCATGCAAATCAAGTAAAA
* *
10403111 TGTCGTGACACGCCATGCA
1 TGTTGTAACACGCCATGCA
10403130 TCAGTATCGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 40 0.95
32 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (31 bp):
TGTTGTAACACGCCATGCAAATCAAGTAAAA
Found at i:10403143 original size:23 final size:23
Alignment explanation
Indices: 10403113--10403217 Score: 147
Period size: 23 Copynumber: 4.6 Consensus size: 23
10403103 AAGTCAAATG
10403113 TCGTGACACGCCATGCATCAGTA
1 TCGTGACACGCCATGCATCAGTA
*
10403136 TCGTGACACGCCATGTATCAGTA
1 TCGTGACACGCCATGCATCAGTA
* * *
10403159 TCGTGACACGTCATGCATCACTG
1 TCGTGACACGCCATGCATCAGTA
* * *
10403182 TCTTGACACGCCATGCATCATTG
1 TCGTGACACGCCATGCATCAGTA
10403205 TCGTGACACGCCA
1 TCGTGACACGCCA
10403218 ATCACTGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 73 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (23 bp):
TCGTGACACGCCATGCATCAGTA
Found at i:10403322 original size:55 final size:55
Alignment explanation
Indices: 10403254--10403431 Score: 184
Period size: 55 Copynumber: 3.2 Consensus size: 55
10403244 CCAACATCCG
10403254 TGACACGCTAAAAACCCAAAAAACCAGTTAACCCACGGCACA-C-CAGGAACAGCCA
1 TGACACGCTAAAAACCCAAAAAACCAGTTAACCCAC--CACACCTCAGGAACAGCCA
* * ** *
10403309 TGACACG-TCAAAAATCCATAAATTCAGTTAACCCACCACACCTCAGGAACAGCCG
1 TGACACGCT-AAAAACCCAAAAAACCAGTTAACCCACCACACCTCAGGAACAGCCA
* * * * * **
10403364 TGACACGCTAACAACCCAAATAACTAGTTAACCCACAACACGTC-GGTAACAGCTG
1 TGACACGCTAAAAACCCAAAAAACCAGTTAACCCACCACACCTCAGG-AACAGCCA
10403419 TGACACGCTAAAA
1 TGACACGCTAAAA
10403432 TAACTCTTCA
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
53 4 0.04
54 4 0.04
55 93 0.91
56 1 0.01
ACGTcount: A:0.40, C:0.32, G:0.14, T:0.13
Consensus pattern (55 bp):
TGACACGCTAAAAACCCAAAAAACCAGTTAACCCACCACACCTCAGGAACAGCCA
Found at i:10408043 original size:19 final size:19
Alignment explanation
Indices: 10408019--10408063 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10408009 GGCCGGCCAT
*
10408019 ACAAAAGAAAG-GAAGAAA
1 ACAAAAGAAAGTAAAGAAA
10408037 GACAAAA-AAAGTAAAGAAA
1 -ACAAAAGAAAGTAAAGAAA
10408056 ACAAAAGA
1 ACAAAAGA
10408064 GAAGAGTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.73, C:0.07, G:0.18, T:0.02
Consensus pattern (19 bp):
ACAAAAGAAAGTAAAGAAA
Found at i:10408667 original size:22 final size:22
Alignment explanation
Indices: 10408639--10408686 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
10408629 ACGACCCTAG
*
10408639 GAAGAGAGGAAGCCACGGTGGT
1 GAAGAGAGGAAGACACGGTGGT
*
10408661 GAAGAGAGGAAGACATGGTGGT
1 GAAGAGAGGAAGACACGGTGGT
10408683 GAAG
1 GAAG
10408687 GGAGTGACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.08, G:0.46, T:0.10
Consensus pattern (22 bp):
GAAGAGAGGAAGACACGGTGGT
Found at i:10408775 original size:28 final size:27
Alignment explanation
Indices: 10408742--10408861 Score: 158
Period size: 28 Copynumber: 4.5 Consensus size: 27
10408732 ATAAAAGAAG
*
10408742 TAGAAAATAAAAATGGGCATGGCCCAAA
1 TAGAAAATAAAAATGGGCATGACCC-AA
10408770 TAGAAAATAAAAATGGGCATGACCCAAA
1 TAGAAAATAAAAATGGGCATGACCC-AA
10408798 TAGAAAAT--AAATGGGCATGACCCAA
1 TAGAAAATAAAAATGGGCATGACCCAA
* * *
10408823 TAGAAAAT--AAGTGAGCATGGCCCAA
1 TAGAAAATAAAAATGGGCATGACCCAA
10408848 TAGAAAATAAAAAT
1 TAGAAAATAAAAAT
10408862 AAATAGGTTT
Statistics
Matches: 85, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
25 32 0.38
26 15 0.18
27 3 0.04
28 35 0.41
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.16
Consensus pattern (27 bp):
TAGAAAATAAAAATGGGCATGACCCAA
Found at i:10409664 original size:170 final size:171
Alignment explanation
Indices: 10409060--10411282 Score: 2552
Period size: 171 Copynumber: 13.0 Consensus size: 171
10409050 GGCTTTCGCT
* * * *
10409060 TCACGTTTCCTGAGTTTAAC-TATCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAAATT-A
1 TCACGTTTCCCGAGGTAAACAT-TCAATTATAATCTGTTTTAACAAAAAATGT-AAAAAAATTCA
* * * * ** *
10409123 ATTTAAAATCAGTAATGAGATTATAAAACTATTTAGAGCGAGTAACAAGGCTTTCGAAGGCATGA
64 ACTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGG
* * * ** * * ** *
10409188 GCGACTATAAATTGG-CTTTTCTTGTCAATTGATGGCTTTCGCT
129 GTGACTATAAA-TGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * * * * * *
10409231 TCACATTTCCTGTGGCT-AACTTTAAATTATAATCTTTTTTAACCAAAAATGTAAGAAAATTCAA
1 TCACGTTTCCCGAGG-TAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * ** * * * *
10409295 CTTAAAATAAAAAATGAGCCTATAAA-ATAATTTAAAGCGACTAATAAGGCTTTCGAAGGTATGG
65 CTTAAAATCAATAATGAGATTATAAACCT-ATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGG
* * * *
10409359 GTGACTATAGATAGAATTTTTCTATCAACGGAGGGTTTTAACC
129 GTGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * * * * *
10409402 TCACGTTTCCCGAGGTAAATATTCAATTATAATCCGTTTAAACAAAAAATATTAAAAAATTTAAG
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
* * *
10409467 TTAAAATCAATAATAAGATTATAAACCTATTTAAAGTGAGTAATGAGGTTTTCGAAGGCATGGGT
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
* *
10409532 TACTATAAATGGACTTTTCCTATCAACGGGGGGTTTTAACC
131 GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* *
10409573 TCACGTTTCCCGA-GTAAACACTCAATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAAC
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
* *
10409637 TTAAAAACAATAATGAGTTTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
* * *
10409702 GACTACAAATGAACTTTTCCTATCAACAGAGGGTTTTAACC
131 GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * *
10409743 TCATGTTTCTCGAGGTAAACATTCAATCT-TAAACTGTTTTAACATAAAATGTAAAAAAATTCAA
1 TCACGTTTCCCGAGGTAAACATTCAAT-TATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * * **
10409807 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGTGAGTAACGAGGCTTTCAAAGGCATAAG
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGG
*
10409872 TGACTATAAATGGACTTTTCCTATCAACGAAGGGTTTTAACC
130 TGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * *
10409914 TTACGTTTCCCGAGGTAAACATTCAATTATAAACTGTTTTAACAAAAAATG-CAAAAAATTCAAC
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
** * *
10409978 CCAAAATCAATAATGAGATTATAAACCTCTTTAAAACGAGTAATGAGGCTTTCGAAGGCATGGGT
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
* * *
10410043 GACTATAAATTGACTTTTCCTATCAATGGAGGGTTTGAACC
131 GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * *
10410084 TCACGTTTTCGGAGGTAAACAATCAATTATAAACTGTTTTAACAAAAAATGCT--AAAAATTCAA
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATG-TAAAAAAATTCAA
* * * *
10410147 CTTAAAATCAATAATGAGAATATAAACCTATTTAAAACGAGTAATGACG-TTGTCGAAGGCATGA
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTT-TCGAAGGCATGG
* * * * *
10410211 GTGACTATAAATGGACTTTTCTTGTCAATC-GATGGCTTTT-GCT
129 GTGACTATAAATGGACTTTTCCTATCAA-CGGA-GGGTTTTAACC
* * * * *
10410254 TCACGTTTCCCGAGTTTAACAATCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAAT
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
* * * ** * *
10410319 TTAAAATCAGTAATGAGATTATAAAACTATTTAGAGCGAGTAACAAGGCTTTCGAAGGCATGAGC
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
* * * * * ** *
10410384 GACTATAAAT-TAGCTTTTCTTGTCAATC-GATGGCTTTCGCT
131 GACTATAAATGGA-CTTTTCCTATCAA-CGGAGGGTTTTAACC
* * * * *
10410425 TCACGTTT-CCTATGGCT-AACATTCAATTATAATCTTTTTTAACCAAAAATATAAGAAAATTCA
1 TCACGTTTCCCGA-GG-TAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCA
* * ** * *
10410488 ACTTAAAATAAAAAATGAGCCTATAAA--TAATTTAAAACG-GCTAATAAGGCTTTCGAAGGCAT
64 ACTTAAAATCAATAATGAGATTATAAACCT-ATTTAAAGCGAG-TAATGAGGCTTTCGAAGGCAT
* *
10410550 GGGTGACTATAGATGGACTTTTTCTATCAACGGAGGGTTTTAACC
127 GGGTGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * * * * * *
10410595 TCACGTTTCCCAAGGTAAATATTCAATTATAATCCGTTTAAACAAAAAATATTAAAAAATTTAAG
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
*
10410660 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGTGGCTTTCGAAGGCATGGGT
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
10410725 GACTATAAATGGACTTTTCCTATCAACGG-GGGTTTTAACC
131 GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * *
10410765 ACACGTTTCCCGA-GTAAACACTT-AATTATAATCCGTTTAAACAAAAAATGTAAAAAAATTCAA
1 TCACGTTTCCCGAGGTAAACA-TTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * * * **
10410828 CTTAAAATCAATAATGAGATTATAAACATTTTTAAAGCGAGTAATGAAGCTTTTGAAGGCATGAA
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGG
* *
10410893 TGACTATAAATGGACTTTTCCTATCAACAGAGGGTTCTAACC
130 TGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * * * * * * *
10410935 TCACGTTTCTCGAGGTAAATATCCAATTATAATCCGTTTAAACAAAAAATTTTAAAAAATTTAAG
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
*
10411000 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGC
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
* *
10411065 AACTGTAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
131 GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
* * * *
10411106 ACACGTTTCACGA-GTAAACACTT-AATTATAATCCGTTTAAACAAAAAATGTAAAAAAATTCAA
1 TCACGTTTCCCGAGGTAAACA-TTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * * * **
10411169 CTTAAAATCAATAATGAGATTATAAACATTTTTAAAGCGAGTAATGAAGCTTTTGAAGGCATGAA
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGG
* ** *
10411234 TGACTATAAATAGACTTTTCCTATCAATAGAGGGTTCTAACC
130 TGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
*
10411276 TCGCGTT
1 TCACGTT
10411283 NNNNNNNNNN
Statistics
Matches: 1754, Mismatches: 262, Indels: 73
0.84 0.13 0.03
Matches are distributed among these distances:
169 136 0.08
170 777 0.44
171 832 0.47
172 9 0.01
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (171 bp):
TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGT
GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACC
Found at i:10409705 original size:341 final size:342
Alignment explanation
Indices: 10409060--10411282 Score: 2547
Period size: 341 Copynumber: 6.5 Consensus size: 342
10409050 GGCTTTCGCT
* * * *
10409060 TCACGTTTCCTGAGTTTAAC-TATCAATTATAATTTGTTTTAACAAAAAATGTAAAAAAAATT-A
1 TCACGTTTCCCGAGGTAAACAT-TCAATTATAATCTGTTTTAACAAAAAATGT-AAAAAAATTCA
* * * * ** *
10409123 ATTTAAAATCAGTAATGAGATTATAAAACTATTTAGAGCGAGTAACAAGGCTTTCGAAGGCATGA
64 ACTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGTTTTCGAAGGCATGA
* * * ** * * ** * * * *
10409188 GCGACTATAAATTGG-CTTTTCTTGTCAATTGATGGCTTTCGCTTCACATTTCCTGTGGCT-AAC
129 GTGACTATAAA-TGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTTTCCCGAGG-TAAAC
* * * * * * * * **
10409251 TTTAAATTATAATCTTTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATAAAAAATGAGCCT
192 ATTCAATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATT
* * * * * * *
10409316 ATAAA-ATAATTTAAAGCGACTAATAAGGCTTTCGAAGGTATGGGTGACTATAGATAGAATTTTT
257 ATAAACCT-ATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTC
10409380 CTATCAACGGAGGGTTTTAACC
321 CTATCAACGGAGGGTTTTAACC
* * * * * * *
10409402 TCACGTTTCCCGAGGTAAATATTCAATTATAATCCGTTTAAACAAAAAATATTAAAAAATTTAAG
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
* * *
10409467 TTAAAATCAATAATAAGATTATAAACCTATTTAAAGTGAGTAATGAGGTTTTCGAAGGCATGGGT
66 TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGTTTTCGAAGGCATGAGT
* * *
10409532 TACTATAAATGGACTTTTCCTATCAACGGGGGGTTTTAACCTCACGTTTCCCGA-GTAAACACTC
131 GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTTTCCCGAGGTAAACATTC
* *
10409596 AATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAAACAATAATGAGTTTATAA
196 AATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
*
10409661 ACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTACAAAT-GAACTTTTCCTAT
261 ACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATAG-ACTTTTCCTAT
*
10409725 CAACAGAGGGTTTTAACC
325 CAACGGAGGGTTTTAACC
* * * *
10409743 TCATGTTTCTCGAGGTAAACATTCAATCT-TAAACTGTTTTAACATAAAATGTAAAAAAATTCAA
1 TCACGTTTCCCGAGGTAAACATTCAAT-TATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * * * *
10409807 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGTGAGTAACGAGGCTTTCAAAGGCATAAG
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGTTTTCGAAGGCATGAG
* *
10409872 TGACTATAAATGGACTTTTCCTATCAACGAAGGGTTTTAACCTTACGTTTCCCGAGGTAAACATT
130 TGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTTTCCCGAGGTAAACATT
* * * **
10409937 CAATTATAAACTGTTTTAACAAAAAATG-CAAAAAATTCAACCCAAAATCAATAATGAGATTATA
195 CAATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
* * *
10410001 AACCTCTTTAAAACGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATTGACTTTTCCTAT
260 AACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCCTAT
* *
10410066 CAATGGAGGGTTTGAACC
325 CAACGGAGGGTTTTAACC
* * * *
10410084 TCACGTTTTCGGAGGTAAACAATCAATTATAAACTGTTTTAACAAAAAATGCT--AAAAATTCAA
1 TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATG-TAAAAAAATTCAA
* * * *
10410147 CTTAAAATCAATAATGAGAATATAAACCTATTTAAAACGAGTAATGACGTTGTCGAAGGCATGAG
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGTTTTCGAAGGCATGAG
* * * * * * *
10410212 TGACTATAAATGGACTTTTCTTGTCAATC-GATGGCTTTT-GCTTCACGTTTCCCGAGTTTAACA
130 TGACTATAAATGGACTTTTCCTATCAA-CGGA-GGGTTTTAACCTCACGTTTCCCGAGGTAAACA
* * * * *
10410275 ATCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAATTTAAAATCAGTAATGAGATTA
193 TTCAATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTA
* * ** * * *
10410340 TAAAACTATTTAGAGCGAGTAACAAGGCTTTCGAAGGCATGAGCGACTATAAATTAG-CTTTTCT
258 TAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAA-TAGACTTTTCC
* * * ** *
10410404 TGTCAATC-GATGGCTTTCGCT
322 TATCAA-CGGAGGGTTTTAACC
* * * * *
10410425 TCACGTTT-CCTATGGCT-AACATTCAATTATAATCTTTTTTAACCAAAAATATAAGAAAATTCA
1 TCACGTTTCCCGA-GG-TAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCA
* * ** * * *
10410488 ACTTAAAATAAAAAATGAGCCTATAAA--TAATTTAAAACG-GCTAATAAGGCTTTCGAAGGCAT
64 ACTTAAAATCAATAATGAGATTATAAACCT-ATTTAAAGCGAG-TAATGAGGTTTTCGAAGGCAT
* * * * *
10410550 GGGTGACTATAGATGGACTTTTTCTATCAACGGAGGGTTTTAACCTCACGTTTCCCAAGGTAAAT
127 GAGTGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTTTCCCGAGGTAAAC
* * * * *
10410615 ATTCAATTATAATCCGTTTAAACAAAAAATATTAAAAAATTTAAGTTAAAATCAATAATGAGATT
192 ATTCAATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATT
* *
10410680 ATAAACCTATTTAAAGCGAGTAATGTGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCC
257 ATAAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCC
10410745 TATCAACGG-GGGTTTTAACC
322 TATCAACGGAGGGTTTTAACC
* * *
10410765 ACACGTTTCCCGA-GTAAACACTT-AATTATAATCCGTTTAAACAAAAAATGTAAAAAAATTCAA
1 TCACGTTTCCCGAGGTAAACA-TTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * *
10410828 CTTAAAATCAATAATGAGATTATAAACATTTTTAAAGCGAGTAATGAAGCTTTT-GAAGGCATGA
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATG-AGGTTTTCGAAGGCATGA
* * * * *
10410892 ATGACTATAAATGGACTTTTCCTATCAACAGAGGGTTCTAACCTCACGTTTCTCGAGGTAAATAT
129 GTGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTTTCCCGAGGTAAACAT
* * * * * *
10410957 CCAATTATAATCCGTTTAAACAAAAAATTTTAAAAAATTTAAGTTAAAATCAATAATGAGATTAT
194 TCAATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTAT
** * *
10411022 AAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGCAACTGTAAATGGACTTTTCCTA
259 AAACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCCTA
10411087 TCAACGGAGGGTTTTAACC
324 TCAACGGAGGGTTTTAACC
* * * *
10411106 ACACGTTTCACGA-GTAAACACTT-AATTATAATCCGTTTAAACAAAAAATGTAAAAAAATTCAA
1 TCACGTTTCCCGAGGTAAACA-TTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAA
* * *
10411169 CTTAAAATCAATAATGAGATTATAAACATTTTTAAAGCGAGTAATGAAGCTTTT-GAAGGCATGA
65 CTTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATG-AGGTTTTCGAAGGCATGA
* * ** * *
10411233 ATGACTATAAATAGACTTTTCCTATCAATAGAGGGTTCTAACCTCGCGTT
129 GTGACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTT
10411283 NNNNNNNNNN
Statistics
Matches: 1622, Mismatches: 225, Indels: 69
0.85 0.12 0.04
Matches are distributed among these distances:
338 1 0.00
339 61 0.04
340 382 0.24
341 970 0.60
342 207 0.13
343 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (342 bp):
TCACGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
TTAAAATCAATAATGAGATTATAAACCTATTTAAAGCGAGTAATGAGGTTTTCGAAGGCATGAGT
GACTATAAATGGACTTTTCCTATCAACGGAGGGTTTTAACCTCACGTTTCCCGAGGTAAACATTC
AATTATAATCTGTTTAAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
ACCTATTTAAAGCGAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCCTATC
AACGGAGGGTTTTAACC
Found at i:10413287 original size:170 final size:169
Alignment explanation
Indices: 10412963--10413618 Score: 700
Period size: 170 Copynumber: 3.9 Consensus size: 169
10412953 TTCCGGGTCG
* * * * * *
10412963 TGACAA-AAAA-TCCATCTATAGTCACCCATGCCTTCGAAATCCTTATTAGTCGCTTTAAATTGT
1 TGACAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTCATTACTCGCTTTAAATAGG
** * * * * *
10413026 TTTATAGGCTCATTTTTTATTTTAAGTTGAATTTTCTTATATTTTTGGTTAAAA-AAGATTATAA
66 TTTATAATCTCATTATTAATTTTAAGTT-AATTTTTTTACATTTTTTGTTAAAACAA-ATTATAA
* *
10413090 TTGAATGTTAGCCACAGGAAACGTGAAGCAAAAGCCATCGAT
129 TTGAATGTTAACCTC-GGAAACGTGAAGCAAAAGCCATCGAT
*** ** *
10413132 TGACAAGAAAAGTCCATTTATAGTCGTTCATGCCTTCGAAAGCCTTGTTACTCGCTCTAAAT-GG
1 TGACAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTCATTACTCGCTTTAAATAGG
* *
10413196 TTTTATAATCTCATTACTAATTTTAAGCTT-ATTTTTTTATATTTTTTGTTAAAACAAATTATAA
66 -TTTATAATCTCATTATTAATTTTAAG-TTAATTTTTTTACATTTTTTGTTAAAACAAATTATAA
* *
10413260 TT-AATTGTTAAACTCGGAAAACGTGAAGCGAAAGCCATCGAT
129 TTGAA-TGTTAACCTCGG-AAACGTGAAGCAAAAGCCATCGAT
* *
10413302 TGACAAGAAAAGTCCTTTTATAGTCACTCATGCCTTCGACAA-CCTCATTACTCGC-TTAAATAG
1 TGACAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGA-AAGCCTCATTACTCGCTTTAAATAG
* * **
10413365 GTTTATAATCTCATTATTGATTTTATGTTAAATTTTTTTACATTTTTTGTTAAAACAGTTTATAA
65 GTTTATAATCTCATTATTAATTTTAAGTT-AATTTTTTTACATTTTTTGTTAAAACAAATTATAA
* * * * * * *
10413430 TTGAATGTTTACCTTAGGAAACATGAGGTTAAAA-CCCTCCAT
129 TTGAATGTTAACC-TCGGAAACGTGAAG-CAAAAGCCATCGAT
* * * * *
10413472 TGATAGGAAAAGTCTATTTATAGTCACCGATGCCTTCGAAAGCCTCATTACTCGGTTTAAATAGG
1 TGACAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTCATTACTCGCTTTAAATAGG
* **
10413537 TTTATAATCTCAATATTAATTTTAAGTTGAATTTTTTTACATTTTGTTGTTAAAACAGTTTATAA
66 TTTATAATCTCATTATTAATTTTAAGTT-AATTTTTTTACATTTT-TTGTTAAAACAAATTATAA
* *
10413602 TTGAAAGTTGACCTCGG
129 TTGAATGTTAACCTCGG
10413619 GGAACCGGAG
Statistics
Matches: 415, Mismatches: 55, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
168 2 0.00
169 40 0.10
170 213 0.51
171 128 0.31
172 32 0.08
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (169 bp):
TGACAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTCATTACTCGCTTTAAATAGG
TTTATAATCTCATTATTAATTTTAAGTTAATTTTTTTACATTTTTTGTTAAAACAAATTATAATT
GAATGTTAACCTCGGAAACGTGAAGCAAAAGCCATCGAT
Found at i:10417284 original size:27 final size:27
Alignment explanation
Indices: 10417254--10417343 Score: 68
Period size: 27 Copynumber: 3.5 Consensus size: 27
10417244 CATTATAACT
10417254 ATTATTTATAATATTTTTAAATTTTAA
1 ATTATTTATAATATTTTTAAATTTTAA
* *
10417281 ATTATTTTTTAATTATTATT--A-TTT--
1 ATTA-TTTATAA-TATTTTTAAATTTTAA
*
10417305 -TTATTTATAATA-TTATATAATTTTAA
1 ATTATTTATAATATTTTTA-AATTTTAA
*
10417331 AGTATTTATAATA
1 ATTATTTATAATA
10417344 AAAAATTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 18
0.67 0.08 0.25
Matches are distributed among these distances:
20 2 0.04
21 2 0.04
22 6 0.12
23 4 0.08
24 3 0.06
26 3 0.06
27 16 0.33
28 6 0.12
29 6 0.12
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (27 bp):
ATTATTTATAATATTTTTAAATTTTAA
Found at i:10417286 original size:18 final size:17
Alignment explanation
Indices: 10417265--10417307 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
10417255 TTATTTATAA
10417265 TATTTTTAAATT-TTAAAT
1 TATTTTTAAATTATT--AT
*
10417283 TATTTTTTAATTATTAT
1 TATTTTTAAATTATTAT
10417300 TATTTTTA
1 TATTTTTA
10417308 TTTATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 9 0.41
18 11 0.50
19 2 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTTTAAATTATTAT
Found at i:10417318 original size:18 final size:18
Alignment explanation
Indices: 10417255--10417320 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 18
10417245 ATTATAACTA
10417255 TTATTTATAATATT-TTT
1 TTATTTATAATATTATTT
**
10417272 AAATTT-TAA-ATTATTTT
1 TTATTTATAATATTA-TTT
*
10417289 TTAATTAT--TATTATTT
1 TTATTTATAATATTATTT
10417305 TTATTTATAATATTAT
1 TTATTTATAATATTAT
10417321 ATAATTTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
15 3 0.08
16 13 0.35
17 14 0.38
18 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTTATAATATTATTT
Found at i:10418074 original size:20 final size:19
Alignment explanation
Indices: 10418049--10418087 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
10418039 AAAACTTTTA
10418049 AAAATAAATATTTATAATTT
1 AAAATAAATATTTA-AATTT
**
10418069 AAAATAGTTATTTAAATTT
1 AAAATAAATATTTAAATTT
10418088 TTTAAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
AAAATAAATATTTAAATTT
Found at i:10427684 original size:2 final size:2
Alignment explanation
Indices: 10427677--10427715 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10427667 NNNNNNNNNN
10427677 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10427716 TATCTCACCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10431414 original size:29 final size:29
Alignment explanation
Indices: 10431372--10431428 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
10431362 ACCCCAATTG
10431372 CCGGCCTACCACGCCACGCTCGTTAGCTA
1 CCGGCCTACCACGCCACGCTCGTTAGCTA
10431401 CCGGCCTACCACGCCACGCTCGTTAGCT
1 CCGGCCTACCACGCCACGCTCGTTAGCT
10431429 GTCGACCTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.16, C:0.46, G:0.21, T:0.18
Consensus pattern (29 bp):
CCGGCCTACCACGCCACGCTCGTTAGCTA
Found at i:10431437 original size:29 final size:29
Alignment explanation
Indices: 10431376--10431450 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
10431366 CAATTGCCGG
*
10431376 CCTACCACGCCACGCTCGTTAGCTACCGG
1 CCTACCACGCCACGCTCGTTAGCTACCGA
**
10431405 CCTACCACGCCACGCTCGTTAGCTGTCGA
1 CCTACCACGCCACGCTCGTTAGCTACCGA
* *
10431434 CCTACCATGCCAAGCTC
1 CCTACCACGCCACGCTC
10431451 AGCTCCTTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.19, C:0.44, G:0.19, T:0.19
Consensus pattern (29 bp):
CCTACCACGCCACGCTCGTTAGCTACCGA
Found at i:10431592 original size:133 final size:132
Alignment explanation
Indices: 10431424--10431825 Score: 588
Period size: 133 Copynumber: 3.0 Consensus size: 132
10431414 CCACGCTCGT
* * * *
10431424 TAGCTGTCGACCTACCATGCCAAGCTCAGCTCCTTCATCGGTTCATCTTTCTTTTCTCTCCAACC
1 TAGCTGTCGGCCTACCACGCCACGCTCGGCTCCTTCATCGGTTCATCTTTCTTTTCTC-CCAACC
* * * * *
10431489 ACCCAGCCACAGCCACGCCCTGCCTACTGCCTTGGTGTTGCCCTAAGCCCCATGCCCTTGTTCTT
65 GCCCAGCCACAGCCACGCCCTGCCGACTGCCTCGGTGTCGCCCCAAGCCCCATGCCCTTGTTCTT
10431554 CCC
130 CCC
**
10431557 TAGCTGTCGGCCTACCACGCCACGCTCGGCTCCTTCATCGGTTCATCTTTCTTTTCTCCCCAGTC
1 TAGCTGTCGGCCTACCACGCCACGCTCGGCTCCTTCATCGGTTCATCTTTCTTTTCT-CCCAACC
* *
10431622 GCCCAACCACAGCCACGCCCTGCAGACTGCCTCGGTGTCGCCCCAAGCCCCATGCCCTTGTTCTT
65 GCCCAGCCACAGCCACGCCCTGCCGACTGCCTCGGTGTCGCCCCAAGCCCCATGCCCTTGTTCTT
10431687 CCC
130 CCC
*
10431690 TAGCTGCCGGCCTACCACGCCACGCTCGGCTCCTTCATCGGTTCATCTTTCTTTTCTCCCTAACC
1 TAGCTGTCGGCCTACCACGCCACGCTCGGCTCCTTCATCGGTTCATCTTTCTTTTCTCCC-AACC
* * * * * * *
10431755 GTCTAGCCACAGCCAAGCCTTGCCGGCTGCCTCGGTGTCGCCCCAAGCCCCACGCCCTTGTTTTT
65 GCCCAGCCACAGCCACGCCCTGCCGACTGCCTCGGTGTCGCCCCAAGCCCCATGCCCTTGTTCTT
10431820 CCC
130 CCC
10431823 TAG
1 TAG
10431826 TTGAGATTTT
Statistics
Matches: 242, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
132 3 0.01
133 238 0.98
134 1 0.00
ACGTcount: A:0.13, C:0.43, G:0.17, T:0.27
Consensus pattern (132 bp):
TAGCTGTCGGCCTACCACGCCACGCTCGGCTCCTTCATCGGTTCATCTTTCTTTTCTCCCAACCG
CCCAGCCACAGCCACGCCCTGCCGACTGCCTCGGTGTCGCCCCAAGCCCCATGCCCTTGTTCTTC
CC
Found at i:10436845 original size:10 final size:10
Alignment explanation
Indices: 10436803--10437056 Score: 88
Period size: 11 Copynumber: 24.3 Consensus size: 10
10436793 NNNNGGCCTA
*
10436803 TTTAAGGATG
1 TTTAAGGATT
10436813 TTTAAGG-TCAT
1 TTTAAGGAT--T
*
10436824 TTTAAGCATT
1 TTTAAGGATT
*
10436834 TTTAAGGTTTT
1 TTTAAGG-ATT
10436845 TTTCATA-GATT
1 TTT-A-AGGATT
**
10436856 TCAAAGGATT
1 TTTAAGGATT
*
10436866 TTTAAGGTGTT
1 TTTAAGG-ATT
10436877 TTTAAGGATT
1 TTTAAGGATT
*
10436887 TTCAAGGGA-T
1 TTTAA-GGATT
* *
10436897 TTT-ATGAAT
1 TTTAAGGATT
* *
10436906 TTTAATTGTTT
1 TTTAA-GGATT
*
10436917 TTTAAGTCATT
1 TTTAAG-GATT
* *
10436928 TTTAAAAGAAT
1 TTT-AAGGATT
**
10436939 TTTAATGCCTT
1 TTTAA-GGATT
*
10436950 TTTGAGGATT
1 TTTAAGGATT
10436960 TTTAAGGTATT
1 TTTAAGG-ATT
*
10436971 TTTACTGGATT
1 TTTA-AGGATT
*
10436982 TTTAAGTATT
1 TTTAAGGATT
10436992 TTTAA-GATCCT
1 TTTAAGGAT--T
* *
10437003 TTTAAGGGTA
1 TTTAAGGATT
10437013 TTTAAGG-TT
1 TTTAAGGATT
*
10437022 TTTTAGAGATT
1 TTTAAG-GATT
*
10437033 TTTCAAGGAAT
1 TTT-AAGGATT
**
10437044 TAGAAGGATT
1 TTTAAGGATT
10437054 TTT
1 TTT
10437057 TATTTAAGGG
Statistics
Matches: 176, Mismatches: 45, Indels: 46
0.66 0.17 0.17
Matches are distributed among these distances:
8 2 0.01
9 15 0.09
10 69 0.39
11 78 0.44
12 11 0.06
13 1 0.01
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.50
Consensus pattern (10 bp):
TTTAAGGATT
Found at i:10437167 original size:21 final size:20
Alignment explanation
Indices: 10437143--10437198 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
10437133 ATGAATCTCA
10437143 AAGGATTTTTAAGGTATTTT
1 AAGGATTTTTAAGGTATTTT
*
10437163 CAAGGA-TTTTACAGGAATTTT
1 -AAGGATTTTTA-AGGTATTTT
**
10437184 ATTGATTTTTAAGGT
1 AAGGATTTTTAAGGT
10437199 TTTGTAAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (20 bp):
AAGGATTTTTAAGGTATTTT
Found at i:10437656 original size:126 final size:124
Alignment explanation
Indices: 10437428--10437722 Score: 337
Period size: 126 Copynumber: 2.3 Consensus size: 124
10437418 GGGTCTTTTT
* * * *
10437428 AAAGATGTTTAAAGTCATTCTAAGCATTTTTAAGTTTTTTTTTTATGGATTTCAAAGTATTTTTA
1 AAAGAT-TTTAAAGTC-TTTTAAGCATTTTTAAG-GTTTTTTTCATGGATTTCAAAGTATTTCTA
* * * *
10437493 ACGTGTTTTCAAGTATTTTCATGGGATTTTGTGGATTTTTAAGG-TTTTATAAGTTA-TTTATA
63 ACGTGTTTTCAAATATTTTCAAGGGATTTTGTGGATTTTAAAGGTTTTTA-AAGTCATTTTA-A
*
10437555 AAAGATTTGTAAAGTCTTTTTAAGCATTTTGAAGGTTTTTTTCATGGATTTCAAA-TGATTTCTA
1 AAAGATTT-TAAAGTC-TTTTAAGCATTTTTAAGGTTTTTTTCATGGATTTCAAAGT-ATTTCTA
* * * *
10437619 ATGTTTTTTTAAATATTTTCAAGGGA-TTTGATTGATTTTAAAGGTTTTTAAAGTCATTTTAA
63 ACGTGTTTTCAAATATTTTCAAGGGATTTTG-TGGATTTTAAAGGTTTTTAAAGTCATTTTAA
* *
10437681 AAAGATTTTTAAAGTCTTTTAAGGATTTTTAATGTTTTTTTC
1 AAAGA-TTTTAAAGTCTTTTAAGCATTTTTAAGGTTTTTTTC
10437723 TTGAATTTTT
Statistics
Matches: 145, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
125 28 0.19
126 77 0.53
127 40 0.28
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (124 bp):
AAAGATTTTAAAGTCTTTTAAGCATTTTTAAGGTTTTTTTCATGGATTTCAAAGTATTTCTAACG
TGTTTTCAAATATTTTCAAGGGATTTTGTGGATTTTAAAGGTTTTTAAAGTCATTTTAA
Found at i:10437689 original size:23 final size:22
Alignment explanation
Indices: 10437658--10437702 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
10437648 GATTGATTTT
*
10437658 AAAGGTTTTTAAAGTCATTTTAA
1 AAAGATTTTTAAAGTC-TTTTAA
10437681 AAAGATTTTTAAAGTCTTTTAA
1 AAAGATTTTTAAAGTCTTTTAA
10437703 GGATTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.44
Consensus pattern (22 bp):
AAAGATTTTTAAAGTCTTTTAA
Found at i:10437948 original size:10 final size:10
Alignment explanation
Indices: 10437935--10437990 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
10437925 TTTTAAGTTC
*
10437935 TTTTCATGGA
1 TTTTCAAGGA
*
10437945 TTTTAAAGGA
1 TTTTCAAGGA
* *
10437955 TTTTTAAGGTG
1 TTTTCAAGG-A
10437966 TTTTCAAGGA
1 TTTTCAAGGA
10437976 TTTTCAATGGA
1 TTTTCAA-GGA
10437987 TTTT
1 TTTT
10437991 GTGGACTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
10 23 0.61
11 15 0.39
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.50
Consensus pattern (10 bp):
TTTTCAAGGA
Found at i:10437958 original size:31 final size:32
Alignment explanation
Indices: 10437923--10437990 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 32
10437913 CATTCTAAGC
* *
10437923 ATTTTTAAGTTCTTTTCATGGATTTT-AAAGG
1 ATTTTTAAGGTCTTTTCAAGGATTTTCAAAGG
* *
10437954 ATTTTTAAGGTGTTTTCAAGGATTTTCAATGG
1 ATTTTTAAGGTCTTTTCAAGGATTTTCAAAGG
10437986 ATTTT
1 ATTTT
10437991 GTGGACTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 23 0.72
32 9 0.28
ACGTcount: A:0.25, C:0.06, G:0.18, T:0.51
Consensus pattern (32 bp):
ATTTTTAAGGTCTTTTCAAGGATTTTCAAAGG
Found at i:10437959 original size:21 final size:20
Alignment explanation
Indices: 10437935--10437990 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
10437925 TTTTAAGTTC
10437935 TTTTCATGGATTTTAAAGGA
1 TTTTCATGGATTTTAAAGGA
* * * *
10437955 TTTTTAAGGTGTTTTCAAGGA
1 TTTTCATGG-ATTTTAAAGGA
10437976 TTTTCAATGGATTTT
1 TTTTC-ATGGATTTT
10437991 GTGGACTTCT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 7 0.26
21 17 0.63
22 3 0.11
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTTCATGGATTTTAAAGGA
Found at i:10438239 original size:21 final size:21
Alignment explanation
Indices: 10438215--10438256 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10438205 TTTTGAGATT
*
10438215 TTTTAAAGGGTATTTAAGGTC
1 TTTTAAAGGATATTTAAGGTC
*
10438236 TTTTTAAGGATATTTAAGGTC
1 TTTTAAAGGATATTTAAGGTC
10438257 ATTCTAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (21 bp):
TTTTAAAGGATATTTAAGGTC
Done.